Compare commits
17
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b3ee631aa6 | ||
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daf2fdecec | ||
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d3a0d0a181 | ||
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07853b9c62 | ||
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49a31c0cf7 | ||
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ba9b251007 | ||
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5ce2fa9ab9 | ||
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78c93de6ce | ||
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3d4aa157cb | ||
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a7f1c177c5 | ||
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2d4e3cf77e |
+7
-7
@@ -16,7 +16,7 @@ install:
|
||||
- set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
|
||||
|
||||
# Install METIS
|
||||
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
|
||||
- ps: Start-FileDownload 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz'
|
||||
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd metis-5.1.0
|
||||
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
|
||||
@@ -26,17 +26,17 @@ install:
|
||||
- cd ..
|
||||
|
||||
# Install hypre
|
||||
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
|
||||
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.19.0/src
|
||||
- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/V2-10-0b.tar.gz'
|
||||
- 7z x V2-10-0b.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2-10-0b
|
||||
- cmake -H. -Bbuild -DHYPRE_USING_FEI=OFF -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- cmake --build build
|
||||
- cmake --build build --target install
|
||||
- cd ../..
|
||||
- cd ..
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2-10-0b\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2-10-0b\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
|
||||
build_script:
|
||||
|
||||
+1
-6
@@ -50,7 +50,6 @@ examples/ex1[04-9]
|
||||
examples/ex1[0-9]p
|
||||
examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
examples/ex25-gpu
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
@@ -123,7 +122,7 @@ examples/sundials/ex16-final.*
|
||||
examples/sundials/Example16*
|
||||
|
||||
examples/petsc/ex[1-69]p
|
||||
examples/petsc/ex1[0-1]p
|
||||
examples/petsc/ex10p
|
||||
|
||||
examples/petsc/mesh.*
|
||||
examples/petsc/sol.*
|
||||
@@ -138,7 +137,6 @@ examples/petsc/Example9*
|
||||
examples/petsc/deformed.*
|
||||
examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
@@ -245,9 +243,6 @@ miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
|
||||
miniapps/adjoint/cvsRoberts_ASAi_dns
|
||||
miniapps/adjoint/adjoint_advection_diffusion
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
+20
-21
@@ -16,12 +16,6 @@ stages:
|
||||
- tests
|
||||
- optional
|
||||
|
||||
env:
|
||||
global:
|
||||
- HYPRE_ARCHIVE=v2.19.0.tar.gz
|
||||
HYPRE_URL=https://github.com/hypre-space/hypre/archive/$HYPRE_ARCHIVE
|
||||
HYPRE_TOP_DIR=hypre-2.19.0
|
||||
|
||||
jobs:
|
||||
include:
|
||||
|
||||
@@ -144,7 +138,8 @@ jobs:
|
||||
NPROCS=2
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
@@ -174,7 +169,8 @@ jobs:
|
||||
NPROCS=2
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
@@ -197,7 +193,7 @@ jobs:
|
||||
- cd ${TRAVIS_BUILD_DIR}/build
|
||||
- cmake ..
|
||||
-DMFEM_USE_MPI=ON
|
||||
-DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../$HYPRE_TOP_DIR/src/hypre
|
||||
-DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../hypre-2.10.0b/src/hypre
|
||||
-DMFEM_MPI_NP=$NPROCS
|
||||
- make -j3 mfem examples
|
||||
- cd ${TRAVIS_BUILD_DIR}/build/tests/unit
|
||||
@@ -205,7 +201,8 @@ jobs:
|
||||
- ctest --output-on-failure
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
@@ -250,7 +247,8 @@ jobs:
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
@@ -270,7 +268,8 @@ jobs:
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
@@ -336,18 +335,18 @@ install:
|
||||
|
||||
# hypre
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e $HYPRE_TOP_DIR/src/hypre/lib/libHYPRE.a ]; then
|
||||
wget $HYPRE_URL;
|
||||
rm -rf $HYPRE_TOP_DIR;
|
||||
tar xvzf $HYPRE_ARCHIVE;
|
||||
cd $HYPRE_TOP_DIR/src;
|
||||
./configure --disable-fortran CC=mpicc CXX=mpic++;
|
||||
if [ ! -e hypre-2.10.0b/src/hypre/lib/libHYPRE.a ]; then
|
||||
wget https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz --no-check-certificate;
|
||||
rm -rf hypre-2.10.0b;
|
||||
tar xvzf hypre-2.10.0b.tar.gz;
|
||||
cd hypre-2.10.0b/src;
|
||||
./configure --disable-fortran --without-fei CC=mpicc CXX=mpic++;
|
||||
make -j3;
|
||||
cd ../..;
|
||||
else
|
||||
echo "Reusing cached $HYPRE_TOP_DIR/";
|
||||
echo "Reusing cached hypre-2.10.0b/";
|
||||
fi;
|
||||
ln -s $HYPRE_TOP_DIR hypre;
|
||||
ln -s hypre-2.10.0b hypre;
|
||||
else
|
||||
echo "Serial build, not using hypre";
|
||||
fi
|
||||
@@ -355,7 +354,7 @@ install:
|
||||
# METIS
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e metis-4.0/libmetis.a ]; then
|
||||
wget https://mfem.github.io/tpls/metis-4.0.3.tar.gz;
|
||||
wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz;
|
||||
tar xvzf metis-4.0.3.tar.gz;
|
||||
make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
|
||||
rm -rf metis-4.0;
|
||||
|
||||
@@ -33,9 +33,6 @@ Meshing improvements
|
||||
for example the periodic-annulus-sector and periodic-torus-sector files in
|
||||
the data directory.
|
||||
|
||||
- Added complete action of the TMOP Integrator to account for the spatial
|
||||
derivatives of discrete and analytic targets.
|
||||
|
||||
Performance improvements
|
||||
------------------------
|
||||
- Added support for explicit vectorization in the high-performance templated
|
||||
@@ -51,19 +48,6 @@ Improved GPU capabilities
|
||||
-------------------------
|
||||
- Added support for Chebyshev accelerated polynomial smoother on GPU.
|
||||
|
||||
- Optimized AMD/HIP kernel support.
|
||||
|
||||
- Added a Full Assembly mode compatible with Device kernel execution. This
|
||||
assembly level builds on top of the current Element Assembly kernels to
|
||||
compute a global sparse matrix. All integrators supported by element assembly
|
||||
are also supported by full assembly. See the '-fa' option in Example 9.
|
||||
|
||||
- Added support for BlockOperator on GPU. See the updated Example 5.
|
||||
|
||||
- Added partial assembly and GPU support for ComplexOperator,
|
||||
[Par]ComplexGridFunction, [Par]ComplexLinearForm, and [Par]SesquilinearForm.
|
||||
See the updated Example 22.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Added support for matrix-free interpolation and restriction operators between
|
||||
@@ -87,7 +71,7 @@ Discretization improvements
|
||||
and, in the continuous field case, arbitrary mesh edges and faces.
|
||||
|
||||
- Added new coefficient and vector coefficient classes for QuadratureFunctions.
|
||||
Additionally, new LinearForm integrators were also added which make use of
|
||||
Additionaly, new LinearForm integrators were also added which make use of
|
||||
these new QuadratureFunction coefficient classes.
|
||||
|
||||
- Added support face integrals on the boundaries of NURBS meshes.
|
||||
@@ -104,10 +88,6 @@ Linear and nonlinear solvers
|
||||
and solution during the solving process of an IterativeSolver after every
|
||||
iteration.
|
||||
|
||||
- Added support for the CVODES package in SUNDIALS which provides ODE
|
||||
solvers with sensitivity analysis capabilities. See the CVODESSolver
|
||||
class and the new adjoint miniapps below.
|
||||
|
||||
- Block arrays of parallel matrices can now be merged into a single parallel
|
||||
matrix with the function HypreParMatrixFromBlocks. This could be useful for
|
||||
solving block systems with parallel direct solvers such as STRUMPACK.
|
||||
@@ -115,8 +95,6 @@ Linear and nonlinear solvers
|
||||
- In SLISolver, changed the residual inner product from (Br,r) to (Br,Br) so the
|
||||
solver can work with non-SPD preconditioner B.
|
||||
|
||||
- Added support for the SLEPc eigensolver package.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new example, Example 25/25p, to demonstrate the use of a Perfectly
|
||||
@@ -131,21 +109,6 @@ New and updated examples and miniapps
|
||||
for applying Dirichlet, Neumann (both homogeneous and inhomogeneous), Robin,
|
||||
and periodic boundary conditions with either H1 or DG discretizations.
|
||||
|
||||
- Added a new miniapp, Navier, that solves the time-dependent Navier-Stokes
|
||||
equations of incompressible fluid dynamics. See the miniapps/navier directory
|
||||
for more details.
|
||||
|
||||
- Added a new miniapps/adjoint directory with two miniapps demonstrating how to
|
||||
solve adjoint problems in MFEM using the CVODES package in SUNDIALS. Both of
|
||||
these miniapps require the MFEM_USE_SUNDIALS configuration option.
|
||||
* The cvsRoberts_ASAi_dns miniapp solves a backward adjoint problem for a
|
||||
system of ODEs, evaluating both forward and adjoint quadratures in serial.
|
||||
* The adjoint_advection_diffusion miniapp solves a backward adjoint problem
|
||||
for an advection diffusion PDE, evaluating adjoint quadratures in parallel.
|
||||
|
||||
- Ported Example 11p to SLEPc, to demonstrate solving the Laplace eigenvalue
|
||||
equation with the shift-and-invert spectral transformation method.
|
||||
|
||||
- Added a simple meshing miniapp, Twist, which demonstrates MFEM's strategy of
|
||||
stitching together opposite surfaces of a mesh to create a topologically
|
||||
periodic mesh.
|
||||
@@ -153,10 +116,11 @@ New and updated examples and miniapps
|
||||
- Added a new meshing miniapp, Minimal Surface, which solves Plateau's problem:
|
||||
the Dirichlet problem for the minimal surface equation.
|
||||
|
||||
- Added full assembly support in Example 9/9p.
|
||||
- Added partial assembly support to examples 4/4p and 5/5p, with diagonal
|
||||
preconditioning.
|
||||
|
||||
- Added a new test problem in Example 24/24p, demonstrating a mixed bilinear
|
||||
form for H1, H(curl), H(div) and L_2, with partial assembly support.
|
||||
- Added a new test problem in example 24/24p, demonstrating a mixed bilinear
|
||||
form for H(div) and L_2, with partial assembly support.
|
||||
|
||||
- Added weak Dirichlet boundary conditions (Nitsche) to the NURBS miniapp.
|
||||
|
||||
@@ -164,9 +128,6 @@ New and updated examples and miniapps
|
||||
mesh based on element attributes. Any newly exposed boundary elements are
|
||||
assigned attribute numbers related to the trimmed element attributes.
|
||||
|
||||
- Added partial assembly and device support to Example 4/4p, Example 5/5p,
|
||||
Example 22/22p, and Example 25/25p, with diagonal preconditioning.
|
||||
|
||||
Improved testing
|
||||
----------------
|
||||
- Added a GitLab pipeline that automates PR testing on supercomputing systems
|
||||
|
||||
+4
-8
@@ -149,13 +149,9 @@ if (MFEM_USE_MPI)
|
||||
message(FATAL_ERROR "PETSc version >= 3.8.0 is required")
|
||||
endif()
|
||||
set(PETSC_INCLUDE_DIRS ${PETSC_INCLUDES})
|
||||
if (MFEM_USE_SLEPC)
|
||||
find_package(SLEPc REQUIRED config)
|
||||
message(STATUS "Found SLEPc version ${SLEPC_VERSION}")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC SLEPC STRUMPACK PUMI)
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK PUMI)
|
||||
foreach(PKG IN LISTS PKGS_NEED_MPI)
|
||||
if (MFEM_USE_${PKG})
|
||||
message(STATUS "Disabling package ${PKG} - requires MPI")
|
||||
@@ -211,10 +207,10 @@ endif()
|
||||
# SUNDIALS
|
||||
if (MFEM_USE_SUNDIALS)
|
||||
if (NOT MFEM_USE_MPI)
|
||||
find_package(SUNDIALS REQUIRED NVector_Serial CVODES ARKODE KINSOL)
|
||||
find_package(SUNDIALS REQUIRED NVector_Serial CVODE ARKODE KINSOL)
|
||||
else()
|
||||
find_package(SUNDIALS REQUIRED
|
||||
NVector_Serial NVector_Parallel NVector_ParHyp CVODES ARKODE KINSOL)
|
||||
NVector_Serial NVector_Parallel NVector_ParHyp CVODE ARKODE KINSOL)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -356,7 +352,7 @@ endif()
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
|
||||
SLEPC MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
|
||||
MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
|
||||
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2)
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
|
||||
@@ -109,7 +109,6 @@ The MFEM source code has the following structure:
|
||||
├── linalg
|
||||
├── mesh
|
||||
├── miniapps
|
||||
│ ├── adjoint
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
|
||||
@@ -383,10 +383,6 @@ MFEM_USE_PETSC = YES/NO
|
||||
and other features based on the PETSc package. When enabled, this option uses
|
||||
the PETSC_* library options, see below.
|
||||
|
||||
MFEM_USE_SLEPC = YES/NO
|
||||
Enable MFEM eigensolvers based on the SLEPc package. When enabled, this
|
||||
option uses the SLEPC_* library options, see below.
|
||||
|
||||
MFEM_USE_MPFR = YES/NO
|
||||
MPFR is a library for multiple-precision floating-point computations. This
|
||||
option enables the use of MPFR in MFEM, e.g. for precise computation of 1D
|
||||
@@ -601,12 +597,6 @@ The specific libraries and their options are:
|
||||
Options: PETSC_OPT, PETSC_LIB.
|
||||
Versions: PETSc >= 3.8.0.
|
||||
|
||||
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
|
||||
uses some of the PETSc options when compiled.
|
||||
URL: https://slepc.upv.es/
|
||||
Options: SLEPC_OPT, SLEPC_LIB.
|
||||
Versions: SLEPc >= 3.8.0.
|
||||
|
||||
- Sidre (optional), part of LLNL's axom project, used when MFEM_USE_SIDRE = YES.
|
||||
Starting with MFEM v4.1, Axom version 0.3.1 or later is required.
|
||||
URL: https://github.com/LLNL/axom
|
||||
@@ -659,11 +649,12 @@ The specific libraries and their options are:
|
||||
Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
|
||||
Versions: OCCA >= 1.0.9.
|
||||
|
||||
- libCEED (optional), used when MFEM_USE_CEED = YES.
|
||||
- libCEED (optional), used when MFEM_USE_CEED = YES. Requires libCEED v0.6
|
||||
or later version, specifically, git-hash 3d05795 or later.
|
||||
URL: https://github.com/CEED/libCEED
|
||||
https://ceed.exascaleproject.org/libceed
|
||||
Options: CEED_DIR, CEED_OPT, CEED_LIB.
|
||||
Versions: libCEED >= 0.6, git-hash a970f63.
|
||||
Versions: libCEED >= 0.6.
|
||||
|
||||
- RAJA (optional), used when MFEM_USE_RAJA = YES.
|
||||
Beginning with MFEM v4.1, only RAJA v0.10.0+ is supported.
|
||||
|
||||
@@ -244,10 +244,6 @@ IF (DEFINED TPL_ENABLE_PETSC)
|
||||
SET(MFEM_USE_PETSC ${TPL_ENABLE_PETSC} CACHE BOOL "Enable PETSc support." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SLEPC)
|
||||
SET(MFEM_USE_SLEPC ${TPL_ENABLE_SLEPC} CACHE BOOL "Enable SLEPc support." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MPFR)
|
||||
SET(MFEM_USE_MPFR ${TPL_ENABLE_MPFR} CACHE BOOL "Enable MPFR usage." FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -38,7 +38,6 @@ set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
|
||||
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
|
||||
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
|
||||
set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
|
||||
set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
|
||||
set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
|
||||
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
|
||||
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
|
||||
|
||||
@@ -104,9 +104,6 @@
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
|
||||
@@ -1,44 +0,0 @@
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Sets the following variables:
|
||||
# - SLEPC_FOUND
|
||||
# - SLEPC_INCLUDE_DIRS
|
||||
# - SLEPC_LIBRARIES
|
||||
|
||||
set(SLEPc_REQUIRED_PACKAGES "PETSC" CACHE STRING
|
||||
"Additional packages required by SLEPc")
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(SLEPc SLEPC SLEPC_DIR
|
||||
"include" "slepceps.h"
|
||||
"${PETSC_ARCH}/lib" "slepc" # add NAMES_PER_DIR?
|
||||
"Paths to headers required by SLEPc."
|
||||
"Libraries required by SLEPc."
|
||||
ADD_COMPONENT "config" "${PETSC_ARCH}/include" "slepcconf.h" "" ""
|
||||
CHECK_BUILD SLEPC_VERSION_OK TRUE
|
||||
"
|
||||
#include \"petsc.h\"
|
||||
#include \"slepceps.h\"
|
||||
int main()
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
int argc = 0;
|
||||
char** argv = NULL;
|
||||
ierr = SlepcInitialize(&argc, &argv, PETSC_NULL, PETSC_NULL);
|
||||
EPS eps;
|
||||
ierr = EPSCreate(PETSC_COMM_SELF, &eps); CHKERRQ(ierr);
|
||||
ierr = EPSDestroy(&eps); CHKERRQ(ierr);
|
||||
ierr = SlepcFinalize(); CHKERRQ(ierr);
|
||||
return 0;
|
||||
}
|
||||
"
|
||||
)
|
||||
@@ -25,6 +25,5 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT CVODE "include" cvode/cvode.h "lib" sundials_cvode
|
||||
ADD_COMPONENT CVODES "include" cvodes/cvodes.h "lib" sundials_cvodes
|
||||
ADD_COMPONENT ARKODE "include" arkode/arkode.h "lib" sundials_arkode
|
||||
ADD_COMPONENT KINSOL "include" kinsol/kinsol.h "lib" sundials_kinsol)
|
||||
|
||||
@@ -731,7 +731,7 @@ function(mfem_export_mk_files)
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GNUTLS
|
||||
MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE
|
||||
MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_MPFR MFEM_USE_SIDRE
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA
|
||||
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
|
||||
@@ -48,9 +48,6 @@
|
||||
#ifdef MFEM_USE_PETSC
|
||||
#error Building with PETSc (MFEM_USE_PETSC=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_SLEPC
|
||||
#error Building with SLEPc (MFEM_USE_SLEPC=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_PUMI
|
||||
#error Building with PUMI (MFEM_USE_PUMI=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
|
||||
@@ -118,9 +118,6 @@
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
|
||||
@@ -37,7 +37,6 @@ MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
|
||||
MFEM_USE_GNUTLS = @MFEM_USE_GNUTLS@
|
||||
MFEM_USE_NETCDF = @MFEM_USE_NETCDF@
|
||||
MFEM_USE_PETSC = @MFEM_USE_PETSC@
|
||||
MFEM_USE_SLEPC = @MFEM_USE_SLEPC@
|
||||
MFEM_USE_MPFR = @MFEM_USE_MPFR@
|
||||
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
|
||||
@@ -39,7 +39,6 @@ option(MFEM_USE_GNUTLS "Enable GNUTLS usage" OFF)
|
||||
option(MFEM_USE_GSLIB "Enable GSLIB usage" OFF)
|
||||
option(MFEM_USE_NETCDF "Enable NETCDF usage" OFF)
|
||||
option(MFEM_USE_PETSC "Enable PETSc support." OFF)
|
||||
option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
|
||||
option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
|
||||
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
|
||||
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
|
||||
@@ -88,8 +87,6 @@ set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library."
|
||||
|
||||
set(LIBUNWIND_DIR "" CACHE PATH "Path to Libunwind.")
|
||||
|
||||
# For sundials_nvecparhyp and nvecparallel remember to build with MPI_ENABLED=ON
|
||||
# and modify cmake variables for hypre for sundials
|
||||
set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
|
||||
"Path to the SUNDIALS library.")
|
||||
# The following may be necessary, if SUNDIALS was built with KLU:
|
||||
@@ -158,10 +155,6 @@ set(PETSC_DIR "${MFEM_DIR}/../petsc" CACHE PATH
|
||||
"Path to the PETSc main directory.")
|
||||
set(PETSC_ARCH "arch-linux2-c-debug" CACHE STRING "PETSc build architecture.")
|
||||
|
||||
set(SLEPC_DIR "${MFEM_DIR}/../slepc" CACHE PATH
|
||||
"Path to the SLEPc main directory.")
|
||||
set(SLEPC_ARCH "arch-linux2-c-debug" CACHE STRING "SLEPC build architecture.")
|
||||
|
||||
set(MPFR_DIR "" CACHE PATH "Path to the MPFR library.")
|
||||
|
||||
set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
|
||||
|
||||
+3
-5
@@ -189,12 +189,10 @@ OPENMP_LIB =
|
||||
POSIX_CLOCKS_LIB = -lrt
|
||||
|
||||
# SUNDIALS library configuration
|
||||
# For sundials_nvecparhyp and nvecparallel remember to build with MPI_ENABLED=ON
|
||||
# and modify cmake variables for hypre for sundials
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIB = -Wl,-rpath,$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib64\
|
||||
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
|
||||
-lsundials_arkode -lsundials_cvode -lsundials_nvecserial -lsundials_kinsol
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvecparhyp -lsundials_nvecparallel
|
||||
@@ -341,9 +339,9 @@ GSLIB_DIR = @MFEM_DIR@/../gslib/build
|
||||
GSLIB_OPT = -I$(GSLIB_DIR)/include
|
||||
GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
|
||||
|
||||
# CUDA library configuration (currently not needed)
|
||||
# CUDA library configuration
|
||||
CUDA_OPT =
|
||||
CUDA_LIB =
|
||||
CUDA_LIB = -lcusparse
|
||||
|
||||
# HIP library configuration (currently not needed)
|
||||
HIP_OPT =
|
||||
|
||||
@@ -770,7 +770,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/examples/pumi \
|
||||
@MFEM_SOURCE_DIR@/examples/hiop \
|
||||
@MFEM_SOURCE_DIR@/examples/sundials \
|
||||
@MFEM_SOURCE_DIR@/miniapps/adjoint \
|
||||
@MFEM_SOURCE_DIR@/miniapps/common \
|
||||
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
|
||||
@MFEM_SOURCE_DIR@/miniapps/gslib \
|
||||
|
||||
@@ -88,8 +88,8 @@ namespace mfem {
|
||||
* - <a class="el" href="ex24p_8cpp_source.html">Example 24p</a>: parallel mixed finite element spaces and interpolators
|
||||
* - <a class="el" href="ex25_8cpp_source.html">Example 25</a>: simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
|
||||
* - <a class="el" href="ex25p_8cpp_source.html">Example 25p</a>: parallel simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
|
||||
* - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Laplace problem using nodal H1 FEM
|
||||
* - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Laplace problem using nodal H1 FEM
|
||||
* - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Laplace problem using nodal H1 FEM
|
||||
* - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Laplace problem using nodal H1 FEM
|
||||
*
|
||||
* <H4>SUNDIALS Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -101,9 +101,6 @@ namespace mfem {
|
||||
* and
|
||||
* <a class="el" href="sundials_2ex16p_8cpp_source.html">16p</a>
|
||||
* demonstrating the use of MFEM's \link sundials.hpp SUNDIALS classes\endlink
|
||||
* - CVODES adjoint examples:
|
||||
* <a class="el" href="cvsRoberts__ASAi__dns_8cpp_source.html">serial ODE system</a>,
|
||||
* <a class="el" href="adjoint__advection__diffusion_8cpp_source.html">parallel advection-diffusion</a>
|
||||
*
|
||||
* <H4>PETSc Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -143,9 +140,7 @@ namespace mfem {
|
||||
* - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
|
||||
* - <a class="el" href="maxwell_8cpp_source.html">Maxwell</a>: simple transient full-wave electromagnetics simulation code
|
||||
* - <a class="el" href="joule_8cpp_source.html">Joule</a>: transient magnetics and Joule heating miniapp
|
||||
* - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
|
||||
|
||||
* - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
|
||||
* - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
|
||||
* - <a class="el" href="klein-bottle_8cpp_source.html">Klein Bottle</a>: generate three types of Klein bottle surfaces
|
||||
* - <a class="el" href="toroid_8cpp_source.html">Toroid</a>: generate simple toroidal meshes
|
||||
* - <a class="el" href="twist_8cpp_source.html">Twist</a>: generate simple periodic meshes
|
||||
@@ -162,6 +157,7 @@ namespace mfem {
|
||||
* - <a class="el" href="lor-transfer_8cpp_source.html">LOR Transfer</a>: map functions between high-order and low-order refined spaces
|
||||
* - <a class="el" href="findpts_8cpp_source.html">Find Points</a>: evaluate grid function in physical space, <a class="el" href="findpts_8cpp_source.html">serial</a> and <a class="el" href="pfindpts_8cpp_source.html">parallel</a> versions
|
||||
* - <a class="el" href="field-diff_8cpp_source.html">Field Diff</a>: compare grid functions on different meshes
|
||||
* - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
*
|
||||
|
||||
+2
-11
@@ -91,7 +91,7 @@ foreach(SRC_FILE ${ALL_EXE_SRCS})
|
||||
add_test(NAME ${TEST_NAME}_ser
|
||||
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
|
||||
else()
|
||||
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
|
||||
add_test(NAME ${TEST_NAME}_np=4
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
|
||||
@@ -101,22 +101,13 @@ endforeach()
|
||||
|
||||
# If STRUMPACK is enabled, add a test run that uses it.
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
add_test(NAME ex11p_strumpack_np=${MFEM_MPI_NP}
|
||||
add_test(NAME ex11p_strumpack_np=4
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex11p> "-no-vis" "--strumpack"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
|
||||
# If SuperLU_DIST is enabled, add a test run that uses it.
|
||||
if (MFEM_USE_SUPERLU)
|
||||
add_test(NAME ex11p_superlu_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
|
||||
# Include the examples/sundials directory if SUNDIALS is enabled.
|
||||
if (MFEM_USE_SUNDIALS)
|
||||
add_subdirectory(sundials)
|
||||
|
||||
+32
-36
@@ -34,8 +34,7 @@
|
||||
// ex1 -pa -d raja-omp
|
||||
// ex1 -pa -d occa-omp
|
||||
// ex1 -pa -d ceed-cpu
|
||||
// * ex1 -pa -d ceed-cuda
|
||||
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
// ex1 -pa -d ceed-cuda
|
||||
// ex1 -m ../data/beam-hex.mesh -pa -d cuda
|
||||
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
|
||||
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
|
||||
@@ -103,8 +102,8 @@ int main(int argc, char *argv[])
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
@@ -112,10 +111,10 @@ int main(int argc, char *argv[])
|
||||
// elements.
|
||||
{
|
||||
int ref_levels =
|
||||
(int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
|
||||
(int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
@@ -123,70 +122,66 @@ int main(int argc, char *argv[])
|
||||
// Lagrange finite elements of the specified order. If order < 1, we
|
||||
// instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
bool delete_fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
else if (mesh.GetNodes())
|
||||
else if (mesh->GetNodes())
|
||||
{
|
||||
fec = mesh.GetNodes()->OwnFEC();
|
||||
delete_fec = false;
|
||||
fec = mesh->GetNodes()->OwnFEC();
|
||||
cout << "Using isoparametric FEs: " << fec->Name() << endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
FiniteElementSpace fespace(&mesh, fec);
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
<< fespace->GetTrueVSize() << endl;
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined by marking all
|
||||
// the boundary attributes from the mesh as essential (Dirichlet) and
|
||||
// converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (mesh.bdr_attributes.Size())
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(mesh.bdr_attributes.Max());
|
||||
Array<int> ess_bdr(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
|
||||
// the basis functions in the finite element fespace.
|
||||
LinearForm b(&fespace);
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b.Assemble();
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->Assemble();
|
||||
|
||||
// 8. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
GridFunction x(&fespace);
|
||||
GridFunction x(fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 9. Set up the bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
|
||||
// domain integrator.
|
||||
BilinearForm a(&fespace);
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
BilinearForm *a = new BilinearForm(fespace);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
|
||||
// 10. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations such as: eliminating boundary
|
||||
// conditions, applying conforming constraints for non-conforming AMR,
|
||||
// static condensation, etc.
|
||||
if (static_cond) { a.EnableStaticCondensation(); }
|
||||
a.Assemble();
|
||||
if (static_cond) { a->EnableStaticCondensation(); }
|
||||
a->Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
cout << "Size of linear system: " << A->Height() << endl;
|
||||
|
||||
@@ -207,9 +202,9 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
else // Jacobi preconditioning in partial assembly mode
|
||||
{
|
||||
if (UsesTensorBasis(fespace))
|
||||
if (UsesTensorBasis(*fespace))
|
||||
{
|
||||
OperatorJacobiSmoother M(a, ess_tdof_list);
|
||||
OperatorJacobiSmoother M(*a, ess_tdof_list);
|
||||
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
@@ -219,13 +214,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 12. Recover the solution as a finite element grid function.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 13. Save the refined mesh and the solution. This output can be viewed later
|
||||
// using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh.Print(mesh_ofs);
|
||||
mesh->Print(mesh_ofs);
|
||||
ofstream sol_ofs("sol.gf");
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
@@ -237,14 +232,15 @@ int main(int argc, char *argv[])
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << x << flush;
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
}
|
||||
|
||||
// 15. Free the used memory.
|
||||
if (delete_fec)
|
||||
{
|
||||
delete fec;
|
||||
}
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
if (order > 0) { delete fec; }
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+8
-3
@@ -88,6 +88,8 @@ private:
|
||||
Vector funval2;
|
||||
Vector nor;
|
||||
Vector fluxN;
|
||||
IntegrationPoint eip1;
|
||||
IntegrationPoint eip2;
|
||||
|
||||
public:
|
||||
FaceIntegrator(RiemannSolver &rsolver_, const int dim);
|
||||
@@ -422,16 +424,19 @@ void FaceIntegrator::AssembleFaceVector(const FiniteElement &el1,
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
|
||||
Tr.SetAllIntPoints(&ip); // set face and element int. points
|
||||
Tr.Loc1.Transform(ip, eip1);
|
||||
Tr.Loc2.Transform(ip, eip2);
|
||||
|
||||
// Calculate basis functions on both elements at the face
|
||||
el1.CalcShape(Tr.GetElement1IntPoint(), shape1);
|
||||
el2.CalcShape(Tr.GetElement2IntPoint(), shape2);
|
||||
el1.CalcShape(eip1, shape1);
|
||||
el2.CalcShape(eip2, shape2);
|
||||
|
||||
// Interpolate elfun at the point
|
||||
elfun1_mat.MultTranspose(shape1, funval1);
|
||||
elfun2_mat.MultTranspose(shape2, funval2);
|
||||
|
||||
Tr.SetIntPoint(&ip);
|
||||
|
||||
// Get the normal vector and the flux on the face
|
||||
CalcOrtho(Tr.Jacobian(), nor);
|
||||
const double mcs = rsolver.Eval(funval1, funval2, nor, fluxN);
|
||||
|
||||
+36
-39
@@ -32,8 +32,7 @@
|
||||
// mpirun -np 4 ex1p -pa -d occa-cuda
|
||||
// mpirun -np 4 ex1p -pa -d raja-omp
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cpu
|
||||
// * mpirun -np 4 ex1p -pa -d ceed-cuda
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda
|
||||
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
@@ -112,8 +111,8 @@ int main(int argc, char *argv[])
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
@@ -121,23 +120,23 @@ int main(int argc, char *argv[])
|
||||
// more than 10,000 elements.
|
||||
{
|
||||
int ref_levels =
|
||||
(int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
|
||||
(int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
{
|
||||
int par_ref_levels = 2;
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh.UniformRefinement();
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
@@ -145,16 +144,13 @@ int main(int argc, char *argv[])
|
||||
// use continuous Lagrange finite elements of the specified order. If
|
||||
// order < 1, we instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
bool delete_fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
else if (pmesh.GetNodes())
|
||||
else if (pmesh->GetNodes())
|
||||
{
|
||||
fec = pmesh.GetNodes()->OwnFEC();
|
||||
delete_fec = false;
|
||||
fec = pmesh->GetNodes()->OwnFEC();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Using isoparametric FEs: " << fec->Name() << endl;
|
||||
@@ -163,10 +159,9 @@ int main(int argc, char *argv[])
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
ParFiniteElementSpace fespace(&pmesh, fec);
|
||||
HYPRE_Int size = fespace.GlobalTrueVSize();
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_Int size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
@@ -177,44 +172,44 @@ int main(int argc, char *argv[])
|
||||
// by marking all the boundary attributes from the mesh as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(pmesh.bdr_attributes.Max());
|
||||
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (1,phi_i) where phi_i are the basis functions in fespace.
|
||||
ParLinearForm b(&fespace);
|
||||
ParLinearForm *b = new ParLinearForm(fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b.Assemble();
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->Assemble();
|
||||
|
||||
// 10. Define the solution vector x as a parallel finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
ParGridFunction x(&fespace);
|
||||
ParGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
|
||||
// domain integrator.
|
||||
ParBilinearForm a(&fespace);
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
ParBilinearForm *a = new ParBilinearForm(fespace);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, static condensation, etc.
|
||||
if (static_cond) { a.EnableStaticCondensation(); }
|
||||
a.Assemble();
|
||||
if (static_cond) { a->EnableStaticCondensation(); }
|
||||
a->Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
// 13. Solve the linear system A X = B.
|
||||
// * With full assembly, use the BoomerAMG preconditioner from hypre.
|
||||
@@ -222,9 +217,9 @@ int main(int argc, char *argv[])
|
||||
Solver *prec = NULL;
|
||||
if (pa)
|
||||
{
|
||||
if (UsesTensorBasis(fespace))
|
||||
if (UsesTensorBasis(*fespace))
|
||||
{
|
||||
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
|
||||
prec = new OperatorJacobiSmoother(*a, ess_tdof_list);
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -242,7 +237,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
@@ -253,7 +248,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh.Print(mesh_ofs);
|
||||
pmesh->Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
@@ -268,14 +263,16 @@ int main(int argc, char *argv[])
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << pmesh << x << flush;
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
if (delete_fec)
|
||||
{
|
||||
delete fec;
|
||||
}
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
if (order > 0) { delete fec; }
|
||||
delete pmesh;
|
||||
|
||||
MPI_Finalize();
|
||||
|
||||
return 0;
|
||||
|
||||
+45
-63
@@ -13,11 +13,6 @@
|
||||
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2
|
||||
// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex22 -m ../data/inline-quad.mesh -o 3 -p 1 -pa -d cuda
|
||||
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2 -pa -d cuda
|
||||
// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0 -pa -d cuda
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define and
|
||||
// solve simple complex-valued linear systems. It implements three
|
||||
// variants of a damped harmonic oscillator:
|
||||
@@ -81,8 +76,6 @@ int main(int argc, char *argv[])
|
||||
bool visualization = 1;
|
||||
bool herm_conv = true;
|
||||
bool exact_sol = true;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -113,10 +106,6 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -146,18 +135,13 @@ int main(int argc, char *argv[])
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes
|
||||
// with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the mesh to increase resolution. In this example we do
|
||||
// 3. Refine the mesh to increase resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement where the user specifies
|
||||
// the number of levels with the '-r' option.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
@@ -165,7 +149,7 @@ int main(int argc, char *argv[])
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use continuous
|
||||
// 4. Define a finite element space on the mesh. Here we use continuous
|
||||
// Lagrange, Nedelec, or Raviart-Thomas finite elements of the specified
|
||||
// order.
|
||||
if (dim == 1 && prob != 0 )
|
||||
@@ -187,7 +171,7 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: " << fespace->GetTrueVSize()
|
||||
<< endl;
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined based on the type
|
||||
// of mesh and the problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
@@ -199,12 +183,12 @@ int main(int argc, char *argv[])
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
ComplexLinearForm b(fespace, conv);
|
||||
b.Vector::operator=(0.0);
|
||||
|
||||
// 8. Define the solution vector u as a complex finite element grid function
|
||||
// 7. Define the solution vector u as a complex finite element grid function
|
||||
// corresponding to fespace. Initialize u with initial guess of 1+0i or
|
||||
// the exact solution if it is known.
|
||||
ComplexGridFunction u(fespace);
|
||||
@@ -226,6 +210,7 @@ int main(int argc, char *argv[])
|
||||
VectorConstantCoefficient zeroVecCoef(zeroVec);
|
||||
VectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
u = 0.0;
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -278,7 +263,7 @@ int main(int argc, char *argv[])
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
}
|
||||
|
||||
// 9. Set up the sesquilinear form a(.,.) on the finite element space
|
||||
// 8. Set up the sesquilinear form a(.,.) on the finite element space
|
||||
// corresponding to the damped harmonic oscillator operator of the
|
||||
// appropriate type:
|
||||
//
|
||||
@@ -297,7 +282,6 @@ int main(int argc, char *argv[])
|
||||
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
|
||||
|
||||
SesquilinearForm *a = new SesquilinearForm(fespace, conv);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -321,7 +305,7 @@ int main(int argc, char *argv[])
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 9a. Set up the bilinear form for the preconditioner corresponding to the
|
||||
// 8a. Set up the bilinear form for the preconditioner corresponding to the
|
||||
// appropriate operator
|
||||
//
|
||||
// 0) A scalar H1 field
|
||||
@@ -334,8 +318,6 @@ int main(int argc, char *argv[])
|
||||
// -Grad(a Div) - omega^2 b + omega c
|
||||
//
|
||||
BilinearForm *pcOp = new BilinearForm(fespace);
|
||||
if (pa) { pcOp->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -356,9 +338,9 @@ int main(int argc, char *argv[])
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 10. Assemble the form and the corresponding linear system, applying any
|
||||
// necessary transformations such as: assembly, eliminating boundary
|
||||
// conditions, conforming constraints for non-conforming AMR, etc.
|
||||
// 9. Assemble the form and the corresponding linear system, applying any
|
||||
// necessary transformations such as: assembly, eliminating boundary
|
||||
// conditions, conforming constraints for non-conforming AMR, etc.
|
||||
a->Assemble();
|
||||
pcOp->Assemble();
|
||||
|
||||
@@ -366,17 +348,28 @@ int main(int argc, char *argv[])
|
||||
Vector B, U;
|
||||
|
||||
a->FormLinearSystem(ess_tdof_list, u, b, A, U, B);
|
||||
u = 0.0;
|
||||
U = 0.0;
|
||||
|
||||
cout << "Size of linear system: " << A->Width() << endl << endl;
|
||||
OperatorHandle PCOp;
|
||||
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
|
||||
|
||||
// 11. Define and apply a GMRES solver for AU=B with a block diagonal
|
||||
{
|
||||
ComplexSparseMatrix * Asp =
|
||||
dynamic_cast<ComplexSparseMatrix*>(A.Ptr());
|
||||
|
||||
cout << "Size of linear system: "
|
||||
<< 2 * Asp->real().Width() << endl << endl;
|
||||
}
|
||||
|
||||
// 10. Define and apply a GMRES solver for AU=B with a block diagonal
|
||||
// preconditioner based on the appropriate sparse smoother.
|
||||
{
|
||||
Array<int> blockOffsets;
|
||||
blockOffsets.SetSize(3);
|
||||
blockOffsets[0] = 0;
|
||||
blockOffsets[1] = A->Height() / 2;
|
||||
blockOffsets[2] = A->Height() / 2;
|
||||
blockOffsets[1] = PCOp.Ptr()->Height();
|
||||
blockOffsets[2] = PCOp.Ptr()->Height();
|
||||
blockOffsets.PartialSum();
|
||||
|
||||
BlockDiagonalPreconditioner BDP(blockOffsets);
|
||||
@@ -384,31 +377,22 @@ int main(int argc, char *argv[])
|
||||
Operator * pc_r = NULL;
|
||||
Operator * pc_i = NULL;
|
||||
|
||||
if (pa)
|
||||
double s = 1.0;
|
||||
switch (prob)
|
||||
{
|
||||
pc_r = new OperatorJacobiSmoother(*pcOp, ess_tdof_list);
|
||||
case 0:
|
||||
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
|
||||
break;
|
||||
case 1:
|
||||
pc_r = new GSSmoother(*PCOp.As<SparseMatrix>());
|
||||
s = -1.0;
|
||||
break;
|
||||
case 2:
|
||||
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
|
||||
break;
|
||||
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorHandle PCOp;
|
||||
pcOp->SetDiagonalPolicy(mfem::Operator::DIAG_ONE);
|
||||
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
|
||||
break;
|
||||
case 1:
|
||||
pc_r = new GSSmoother(*PCOp.As<SparseMatrix>());
|
||||
break;
|
||||
case 2:
|
||||
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
|
||||
break;
|
||||
default:
|
||||
break; // This should be unreachable
|
||||
}
|
||||
}
|
||||
double s = (prob != 1) ? 1.0 : -1.0;
|
||||
pc_i = new ScaledOperator(pc_r,
|
||||
(conv == ComplexOperator::HERMITIAN) ?
|
||||
s:-s);
|
||||
@@ -426,11 +410,9 @@ int main(int argc, char *argv[])
|
||||
gmres.Mult(B, U);
|
||||
}
|
||||
|
||||
// 12. Recover the solution as a finite element grid function and compute the
|
||||
// 11. Recover the solution as a finite element grid function and compute the
|
||||
// errors if the exact solution is known.
|
||||
a->RecoverFEMSolution(U, b, u);
|
||||
u.real().SyncMemory(u);
|
||||
u.imag().SyncMemory(u);
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
@@ -460,7 +442,7 @@ int main(int argc, char *argv[])
|
||||
cout << endl;
|
||||
}
|
||||
|
||||
// 13. Save the refined mesh and the solution. This output can be viewed
|
||||
// 12. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m mesh -g sol".
|
||||
{
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
@@ -475,7 +457,7 @@ int main(int argc, char *argv[])
|
||||
u.imag().Save(sol_i_ofs);
|
||||
}
|
||||
|
||||
// 14. Send the solution by socket to a GLVis server.
|
||||
// 13. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -534,7 +516,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 15. Free the used memory.
|
||||
// 14. Free the used memory.
|
||||
delete a;
|
||||
delete u_exact;
|
||||
delete pcOp;
|
||||
|
||||
+47
-66
@@ -13,11 +13,6 @@
|
||||
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2 -p 2
|
||||
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 1 -p 1 -pa -d cuda
|
||||
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 1 -p 2 -pa -d cuda
|
||||
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0 -pa -d cuda
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define and
|
||||
// solve simple complex-valued linear systems. It implements three
|
||||
// variants of a damped harmonic oscillator:
|
||||
@@ -46,6 +41,7 @@
|
||||
// We recommend viewing examples 1, 3 and 4 before viewing this
|
||||
// example.
|
||||
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
@@ -88,8 +84,6 @@ int main(int argc, char *argv[])
|
||||
bool visualization = 1;
|
||||
bool herm_conv = true;
|
||||
bool exact_sol = true;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -122,10 +116,6 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -162,24 +152,19 @@ int main(int argc, char *argv[])
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution.
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution.
|
||||
for (int l = 0; l < ser_ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
@@ -189,7 +174,7 @@ int main(int argc, char *argv[])
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange, Nedelec, or Raviart-Thomas finite elements of
|
||||
// the specified order.
|
||||
if (dim == 1 && prob != 0 )
|
||||
@@ -217,7 +202,7 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 8. Determine the list of true (i.e. parallel conforming) essential
|
||||
// 7. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// based on the type of mesh and the problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
@@ -229,14 +214,14 @@ int main(int argc, char *argv[])
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// 8. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
ParComplexLinearForm b(fespace, conv);
|
||||
b.Vector::operator=(0.0);
|
||||
|
||||
// 10. Define the solution vector u as a parallel complex finite element grid
|
||||
// function corresponding to fespace. Initialize u with initial guess of
|
||||
// 1+0i or the exact solution if it is known.
|
||||
// 9. Define the solution vector u as a parallel complex finite element grid
|
||||
// function corresponding to fespace. Initialize u with initial guess of
|
||||
// 1+0i or the exact solution if it is known.
|
||||
ParComplexGridFunction u(fespace);
|
||||
ParComplexGridFunction * u_exact = NULL;
|
||||
if (exact_sol) { u_exact = new ParComplexGridFunction(fespace); }
|
||||
@@ -256,6 +241,7 @@ int main(int argc, char *argv[])
|
||||
VectorConstantCoefficient zeroVecCoef(zeroVec);
|
||||
VectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
u = 0.0;
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -310,7 +296,7 @@ int main(int argc, char *argv[])
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
}
|
||||
|
||||
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
// 10. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
// space corresponding to the damped harmonic oscillator operator of the
|
||||
// appropriate type:
|
||||
//
|
||||
@@ -329,7 +315,6 @@ int main(int argc, char *argv[])
|
||||
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
|
||||
|
||||
ParSesquilinearForm *a = new ParSesquilinearForm(fespace, conv);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -353,7 +338,7 @@ int main(int argc, char *argv[])
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 11a. Set up the parallel bilinear form for the preconditioner
|
||||
// 10a. Set up the parallel bilinear form for the preconditioner
|
||||
// corresponding to the appropriate operator
|
||||
//
|
||||
// 0) A scalar H1 field
|
||||
@@ -366,7 +351,6 @@ int main(int argc, char *argv[])
|
||||
// -Grad(a Div) - omega^2 b + omega c
|
||||
//
|
||||
ParBilinearForm *pcOp = new ParBilinearForm(fespace);
|
||||
if (pa) { pcOp->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -387,7 +371,7 @@ int main(int argc, char *argv[])
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// 11. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, etc.
|
||||
@@ -398,22 +382,30 @@ int main(int argc, char *argv[])
|
||||
Vector B, U;
|
||||
|
||||
a->FormLinearSystem(ess_tdof_list, u, b, A, U, B);
|
||||
u = 0.0;
|
||||
U = 0.0;
|
||||
|
||||
OperatorHandle PCOp;
|
||||
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
ComplexHypreParMatrix * Ahyp =
|
||||
dynamic_cast<ComplexHypreParMatrix*>(A.Ptr());
|
||||
|
||||
cout << "Size of linear system: "
|
||||
<< 2 * fespace->GlobalTrueVSize() << endl << endl;
|
||||
<< 2 * Ahyp->real().GetGlobalNumRows() << endl << endl;
|
||||
}
|
||||
|
||||
// 13. Define and apply a parallel FGMRES solver for AU=B with a block
|
||||
// 12. Define and apply a parallel FGMRES solver for AU=B with a block
|
||||
// diagonal preconditioner based on the appropriate multigrid
|
||||
// preconditioner from hypre.
|
||||
{
|
||||
Array<int> blockTrueOffsets;
|
||||
blockTrueOffsets.SetSize(3);
|
||||
blockTrueOffsets[0] = 0;
|
||||
blockTrueOffsets[1] = A->Height() / 2;
|
||||
blockTrueOffsets[2] = A->Height() / 2;
|
||||
blockTrueOffsets[1] = PCOp.Ptr()->Height();
|
||||
blockTrueOffsets[2] = PCOp.Ptr()->Height();
|
||||
blockTrueOffsets.PartialSum();
|
||||
|
||||
BlockDiagonalPreconditioner BDP(blockTrueOffsets);
|
||||
@@ -421,34 +413,25 @@ int main(int argc, char *argv[])
|
||||
Operator * pc_r = NULL;
|
||||
Operator * pc_i = NULL;
|
||||
|
||||
if (pa)
|
||||
switch (prob)
|
||||
{
|
||||
pc_r = new OperatorJacobiSmoother(*pcOp, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorHandle PCOp;
|
||||
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
pc_r = new HypreBoomerAMG(*PCOp.As<HypreParMatrix>());
|
||||
break;
|
||||
case 1:
|
||||
case 0:
|
||||
pc_r = new HypreBoomerAMG(*PCOp.As<HypreParMatrix>());
|
||||
break;
|
||||
case 1:
|
||||
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), fespace);
|
||||
break;
|
||||
case 2:
|
||||
if (dim == 2 )
|
||||
{
|
||||
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), fespace);
|
||||
break;
|
||||
case 2:
|
||||
if (dim == 2 )
|
||||
{
|
||||
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), fespace);
|
||||
}
|
||||
else
|
||||
{
|
||||
pc_r = new HypreADS(*PCOp.As<HypreParMatrix>(), fespace);
|
||||
}
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
pc_r = new HypreADS(*PCOp.As<HypreParMatrix>(), fespace);
|
||||
}
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
pc_i = new ScaledOperator(pc_r,
|
||||
(conv == ComplexOperator::HERMITIAN) ?
|
||||
@@ -466,11 +449,9 @@ int main(int argc, char *argv[])
|
||||
fgmres.SetPrintLevel(1);
|
||||
fgmres.Mult(B, U);
|
||||
}
|
||||
// 14. Recover the parallel grid function corresponding to U. This is the
|
||||
// 13. Recover the parallel grid function corresponding to U. This is the
|
||||
// local finite element solution on each processor.
|
||||
a->RecoverFEMSolution(U, b, u);
|
||||
u.real().SyncMemory(u);
|
||||
u.imag().SyncMemory(u);
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
@@ -503,7 +484,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can be
|
||||
// 14. Save the refined mesh and the solution in parallel. This output can be
|
||||
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_r_name, sol_i_name;
|
||||
@@ -523,7 +504,7 @@ int main(int argc, char *argv[])
|
||||
u.imag().Save(sol_i_ofs);
|
||||
}
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
// 15. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -588,7 +569,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
// 16. Free the used memory.
|
||||
delete a;
|
||||
delete u_exact;
|
||||
delete pcOp;
|
||||
|
||||
+8
-87
@@ -7,7 +7,6 @@
|
||||
// ex24 -m ../data/beam-tet.mesh
|
||||
// ex24 -m ../data/beam-hex.mesh -o 2 -pa
|
||||
// ex24 -m ../data/beam-hex.mesh -o 2 -pa -p 1
|
||||
// ex24 -m ../data/beam-hex.mesh -o 2 -pa -p 2
|
||||
// ex24 -m ../data/escher.mesh
|
||||
// ex24 -m ../data/escher.mesh -o 2
|
||||
// ex24 -m ../data/fichera.mesh
|
||||
@@ -25,13 +24,12 @@
|
||||
// ex24 -m ../data/beam-hex.mesh -pa -d cuda
|
||||
//
|
||||
// Description: This example code illustrates usage of mixed finite element
|
||||
// spaces, with three variants:
|
||||
// spaces, with two variants:
|
||||
//
|
||||
// 1) (grad p, u) for p in H^1 tested against u in H(curl)
|
||||
// 2) (curl v, u) for v in H(curl) tested against u in H(div), 3D
|
||||
// 3) (div v, q) for v in H(div) tested against q in L_2
|
||||
// 2) (div v, q) for v in H(div) tested against q in L_2
|
||||
//
|
||||
// Using different approaches, we project the gradient, curl, or
|
||||
// Using different approaches, we project the gradient or
|
||||
// divergence to the appropriate space.
|
||||
//
|
||||
// We recommend viewing examples 1, 3, and 5 before viewing this
|
||||
@@ -47,11 +45,8 @@ using namespace mfem;
|
||||
double p_exact(const Vector &x);
|
||||
void gradp_exact(const Vector &, Vector &);
|
||||
double div_gradp_exact(const Vector &x);
|
||||
void v_exact(const Vector &x, Vector &v);
|
||||
void curlv_exact(const Vector &x, Vector &cv);
|
||||
|
||||
int dim;
|
||||
double freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -70,7 +65,7 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&prob, "-p", "--problem-type",
|
||||
"Choose between 0: grad, 1: curl, 2: div");
|
||||
"Choose between 0: H(Curl) or 1: H(Div)");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
@@ -88,7 +83,6 @@ int main(int argc, char *argv[])
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
kappa = freq * M_PI;
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
@@ -125,15 +119,10 @@ int main(int argc, char *argv[])
|
||||
trial_fec = new H1_FECollection(order, dim);
|
||||
test_fec = new ND_FECollection(order, dim);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
trial_fec = new ND_FECollection(order, dim);
|
||||
test_fec = new RT_FECollection(order-1, dim);
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fec = new RT_FECollection(order-1, dim);
|
||||
test_fec = new L2_FECollection(order-1, dim);
|
||||
trial_fec = new RT_FECollection(order - 1, dim);
|
||||
test_fec = new L2_FECollection(order - 1, dim);
|
||||
}
|
||||
|
||||
FiniteElementSpace trial_fes(mesh, trial_fec);
|
||||
@@ -147,12 +136,6 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of Nedelec finite element unknowns: " << test_size << endl;
|
||||
cout << "Number of H1 finite element unknowns: " << trial_size << endl;
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
cout << "Number of Nedelec finite element unknowns: " << trial_size << endl;
|
||||
cout << "Number of Raviart-Thomas finite element unknowns: " << test_size <<
|
||||
endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << "Number of Raviart-Thomas finite element unknowns: "
|
||||
@@ -167,18 +150,12 @@ int main(int argc, char *argv[])
|
||||
GridFunction x(&test_fes);
|
||||
FunctionCoefficient p_coef(p_exact);
|
||||
VectorFunctionCoefficient gradp_coef(sdim, gradp_exact);
|
||||
VectorFunctionCoefficient v_coef(sdim, v_exact);
|
||||
VectorFunctionCoefficient curlv_coef(sdim, curlv_exact);
|
||||
FunctionCoefficient divgradp_coef(div_gradp_exact);
|
||||
|
||||
if (prob == 0)
|
||||
{
|
||||
gftrial.ProjectCoefficient(p_coef);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
gftrial.ProjectCoefficient(v_coef);
|
||||
}
|
||||
else
|
||||
{
|
||||
gftrial.ProjectCoefficient(gradp_coef);
|
||||
@@ -202,11 +179,6 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new MixedVectorGradientIntegrator(one));
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new MixedVectorCurlIntegrator(one));
|
||||
}
|
||||
else
|
||||
{
|
||||
a.AddDomainIntegrator(new MassIntegrator(one));
|
||||
@@ -272,10 +244,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
dlo.AddDomainInterpolator(new GradientInterpolator());
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
dlo.AddDomainInterpolator(new CurlInterpolator());
|
||||
}
|
||||
else
|
||||
{
|
||||
dlo.AddDomainInterpolator(new DivergenceInterpolator());
|
||||
@@ -290,10 +258,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
exact_proj.ProjectCoefficient(gradp_coef);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
exact_proj.ProjectCoefficient(curlv_coef);
|
||||
}
|
||||
else
|
||||
{
|
||||
exact_proj.ProjectCoefficient(divgradp_coef);
|
||||
@@ -312,21 +276,8 @@ int main(int argc, char *argv[])
|
||||
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
|
||||
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Gradient interpolant E_h = grad p_h in H(curl): || E_h - grad p"
|
||||
" ||_{L_2} = " << errInterp << '\n' << endl;
|
||||
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
double errSol = x.ComputeL2Error(curlv_coef);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
|
||||
double errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
|
||||
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in H(div): "
|
||||
"|| E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Curl interpolant E_h = curl v_h in H(div): || E_h - curl v "
|
||||
"||_{L_2} = " << errInterp << '\n' << endl;
|
||||
cout << " Projection E_h of exact curl v in H(div): || E_h - curl v "
|
||||
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
else
|
||||
@@ -344,7 +295,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
|
||||
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Divergence interpolant f_h = div v_h in L_2: || f_h - div v "
|
||||
cout << " Divergence interpolant f_h = div v_h in L_2: || f_h - div v"
|
||||
"||_{L_2} = " << errInterp << '\n' << endl;
|
||||
cout << " Projection f_h of exact div v in L_2: || f_h - div v "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
@@ -420,33 +371,3 @@ double div_gradp_exact(const Vector &x)
|
||||
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
void v_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
v(0) = sin(kappa * x(1));
|
||||
v(1) = sin(kappa * x(2));
|
||||
v(2) = sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
v(0) = sin(kappa * x(1));
|
||||
v(1) = sin(kappa * x(0));
|
||||
if (x.Size() == 3) { v(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
|
||||
void curlv_exact(const Vector &x, Vector &cv)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
cv(0) = -kappa * cos(kappa * x(2));
|
||||
cv(1) = -kappa * cos(kappa * x(0));
|
||||
cv(2) = -kappa * cos(kappa * x(1));
|
||||
}
|
||||
else
|
||||
{
|
||||
cv = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
+12
-94
@@ -6,8 +6,7 @@
|
||||
// mpirun -np 4 ex24p -m ../data/square-disc.mesh -o 2
|
||||
// mpirun -np 4 ex24p -m ../data/beam-tet.mesh
|
||||
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -pa
|
||||
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -pa -p 1
|
||||
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -pa -p 2
|
||||
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -p 1 -pa
|
||||
// mpirun -np 4 ex24p -m ../data/escher.mesh
|
||||
// mpirun -np 4 ex24p -m ../data/escher.mesh -o 2
|
||||
// mpirun -np 4 ex24p -m ../data/fichera.mesh
|
||||
@@ -25,13 +24,12 @@
|
||||
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -pa -d cuda
|
||||
//
|
||||
// Description: This example code illustrates usage of mixed finite element
|
||||
// spaces, with three variants:
|
||||
// spaces, with two variants:
|
||||
//
|
||||
// 1) (grad p, u) for p in H^1 tested against u in H(curl)
|
||||
// 2) (curl v, u) for v in H(curl) tested against u in H(div), 3D
|
||||
// 3) (div v, q) for v in H(div) tested against q in L_2
|
||||
// 2) (div v, q) for v in H(div) tested against q in L_2
|
||||
//
|
||||
// Using different approaches, we project the gradient, curl, or
|
||||
// Using different approaches, we project the gradient or
|
||||
// divergence to the appropriate space.
|
||||
//
|
||||
// We recommend viewing examples 1, 3, and 5 before viewing this
|
||||
@@ -47,11 +45,8 @@ using namespace mfem;
|
||||
double p_exact(const Vector &x);
|
||||
void gradp_exact(const Vector &, Vector &);
|
||||
double div_gradp_exact(const Vector &x);
|
||||
void v_exact(const Vector &x, Vector &v);
|
||||
void curlv_exact(const Vector &x, Vector &cv);
|
||||
|
||||
int dim;
|
||||
double freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -76,7 +71,7 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&prob, "-p", "--problem-type",
|
||||
"Choose between 0: grad, 1: curl, 2: div");
|
||||
"Choose between 0: H(Curl) or 1: H(Div)");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
@@ -101,7 +96,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
kappa = freq * M_PI;
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
@@ -153,15 +147,10 @@ int main(int argc, char *argv[])
|
||||
trial_fec = new H1_FECollection(order, dim);
|
||||
test_fec = new ND_FECollection(order, dim);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
trial_fec = new ND_FECollection(order, dim);
|
||||
test_fec = new RT_FECollection(order-1, dim);
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fec = new RT_FECollection(order-1, dim);
|
||||
test_fec = new L2_FECollection(order-1, dim);
|
||||
trial_fec = new RT_FECollection(order - 1, dim);
|
||||
test_fec = new L2_FECollection(order - 1, dim);
|
||||
}
|
||||
|
||||
ParFiniteElementSpace trial_fes(pmesh, trial_fec);
|
||||
@@ -177,12 +166,6 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of Nedelec finite element unknowns: " << test_size << endl;
|
||||
cout << "Number of H1 finite element unknowns: " << trial_size << endl;
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
cout << "Number of Nedelec finite element unknowns: " << trial_size << endl;
|
||||
cout << "Number of Raviart-Thomas finite element unknowns: " << test_size <<
|
||||
endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << "Number of Raviart-Thomas finite element unknowns: "
|
||||
@@ -198,18 +181,12 @@ int main(int argc, char *argv[])
|
||||
ParGridFunction x(&test_fes);
|
||||
FunctionCoefficient p_coef(p_exact);
|
||||
VectorFunctionCoefficient gradp_coef(sdim, gradp_exact);
|
||||
VectorFunctionCoefficient v_coef(sdim, v_exact);
|
||||
VectorFunctionCoefficient curlv_coef(sdim, curlv_exact);
|
||||
FunctionCoefficient divgradp_coef(div_gradp_exact);
|
||||
|
||||
if (prob == 0)
|
||||
{
|
||||
gftrial.ProjectCoefficient(p_coef);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
gftrial.ProjectCoefficient(v_coef);
|
||||
}
|
||||
else
|
||||
{
|
||||
gftrial.ProjectCoefficient(gradp_coef);
|
||||
@@ -233,11 +210,6 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new MixedVectorGradientIntegrator(one));
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new MixedVectorCurlIntegrator(one));
|
||||
}
|
||||
else
|
||||
{
|
||||
a.AddDomainIntegrator(new MassIntegrator(one));
|
||||
@@ -321,10 +293,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
dlo.AddDomainInterpolator(new GradientInterpolator());
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
dlo.AddDomainInterpolator(new CurlInterpolator());
|
||||
}
|
||||
else
|
||||
{
|
||||
dlo.AddDomainInterpolator(new DivergenceInterpolator());
|
||||
@@ -339,10 +307,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
exact_proj.ProjectCoefficient(gradp_coef);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
exact_proj.ProjectCoefficient(curlv_coef);
|
||||
}
|
||||
else
|
||||
{
|
||||
exact_proj.ProjectCoefficient(divgradp_coef);
|
||||
@@ -360,27 +324,11 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl)"
|
||||
": || E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Gradient interpolant E_h = grad p_h in H(curl): || E_h - grad"
|
||||
" p ||_{L_2} = " << errInterp << '\n' << endl;
|
||||
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
double errSol = x.ComputeL2Error(curlv_coef);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
|
||||
double errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in "
|
||||
"H(div): || E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Curl interpolant E_h = curl v_h in H(div): || E_h - curl v "
|
||||
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
|
||||
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Gradient interpolant E_h = grad p_h in H(curl): || E_h - grad p"
|
||||
"||_{L_2} = " << errInterp << '\n' << endl;
|
||||
cout << " Projection E_h of exact curl v in H(div): || E_h - curl v "
|
||||
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
}
|
||||
@@ -402,7 +350,7 @@ int main(int argc, char *argv[])
|
||||
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
|
||||
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Divergence interpolant f_h = div v_h in L_2: || f_h - div v"
|
||||
" ||_{L_2} = " << errInterp << '\n' << endl;
|
||||
"||_{L_2} = " << errInterp << '\n' << endl;
|
||||
cout << " Projection f_h of exact div v in L_2: || f_h - div v "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
@@ -488,33 +436,3 @@ double div_gradp_exact(const Vector &x)
|
||||
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
void v_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
v(0) = sin(kappa * x(1));
|
||||
v(1) = sin(kappa * x(2));
|
||||
v(2) = sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
v(0) = sin(kappa * x(1));
|
||||
v(1) = sin(kappa * x(0));
|
||||
if (x.Size() == 3) { v(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
|
||||
void curlv_exact(const Vector &x, Vector &cv)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
cv(0) = -kappa * cos(kappa * x(2));
|
||||
cv(1) = -kappa * cos(kappa * x(0));
|
||||
cv(2) = -kappa * cos(kappa * x(1));
|
||||
}
|
||||
else
|
||||
{
|
||||
cv = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
+92
-116
@@ -10,10 +10,6 @@
|
||||
// ex25 -o 2 -f 8.0 -ref 3 -prob 4 -m ../data/inline-quad.mesh
|
||||
// ex25 -o 2 -f 2.0 -ref 1 -prob 4 -m ../data/inline-hex.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex25 -o 2 -f 8.0 -ref 3 -prob 4 -m ../data/inline-quad.mesh -pa -d cuda
|
||||
// ex25 -o 2 -f 2.0 -ref 1 -prob 4 -m ../data/inline-hex.mesh -pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple electromagnetic wave
|
||||
// propagation problem corresponding to the second order
|
||||
// indefinite Maxwell equation
|
||||
@@ -86,24 +82,24 @@ public:
|
||||
};
|
||||
|
||||
// Class for returning the PML coefficients of the bilinear form
|
||||
class PMLDiagMatrixCoefficient : public VectorCoefficient
|
||||
class PMLMatrixCoefficient : public MatrixCoefficient
|
||||
{
|
||||
private:
|
||||
CartesianPML * pml = nullptr;
|
||||
void (*Function)(const Vector &, CartesianPML * , Vector &);
|
||||
void (*Function)(const Vector &, CartesianPML * , DenseMatrix &);
|
||||
public:
|
||||
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
|
||||
Vector &),
|
||||
CartesianPML * pml_)
|
||||
: VectorCoefficient(dim), pml(pml_), Function(F)
|
||||
PMLMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
|
||||
DenseMatrix &),
|
||||
CartesianPML * pml_)
|
||||
: MatrixCoefficient(dim), pml(pml_), Function(F)
|
||||
{}
|
||||
virtual void Eval(Vector &K, ElementTransformation &T,
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
double x[3];
|
||||
Vector transip(x, 3);
|
||||
T.Transform(ip, transip);
|
||||
K.SetSize(vdim);
|
||||
K.SetSize(height, width);
|
||||
(*Function)(transip, pml, K);
|
||||
}
|
||||
};
|
||||
@@ -120,13 +116,13 @@ void source(const Vector &x, Vector & f);
|
||||
|
||||
// Functions for computing the necessary coefficients after PML stretching.
|
||||
// J is the Jacobian matrix of the stretching function
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
|
||||
Array2D<double> comp_domain_bdr;
|
||||
Array2D<double> domain_bdr;
|
||||
@@ -157,8 +153,6 @@ int main(int argc, char *argv[])
|
||||
double freq = 5.0;
|
||||
bool herm_conv = true;
|
||||
bool visualization = 1;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -180,21 +174,12 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
|
||||
if (iprob > 4) { iprob = 4; }
|
||||
prob = (prob_type)iprob;
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Setup the mesh
|
||||
// 2. Setup the mesh
|
||||
if (!mesh_file)
|
||||
{
|
||||
exact_known = true;
|
||||
@@ -235,7 +220,7 @@ int main(int argc, char *argv[])
|
||||
// Setup PML length
|
||||
Array2D<double> length(dim, 2); length = 0.0;
|
||||
|
||||
// 4. Setup the Cartesian PML region.
|
||||
// 3. Setup the Cartesian PML region.
|
||||
switch (prob)
|
||||
{
|
||||
case disc:
|
||||
@@ -261,19 +246,19 @@ int main(int argc, char *argv[])
|
||||
comp_domain_bdr = pml->GetCompDomainBdr();
|
||||
domain_bdr = pml->GetDomainBdr();
|
||||
|
||||
// 5. Refine the mesh to increase the resolution.
|
||||
// 4. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Reorient mesh in case of a tet mesh
|
||||
// 5. Reorient mesh in case of a tet mesh
|
||||
mesh->ReorientTetMesh();
|
||||
|
||||
// Set element attributes in order to distinguish elements in the PML region
|
||||
pml->SetAttributes(mesh);
|
||||
|
||||
// 7. Define a finite element space on the mesh. Here we use the Nedelec
|
||||
// 6. Define a finite element space on the mesh. Here we use the Nedelec
|
||||
// finite elements of the specified order.
|
||||
FiniteElementCollection *fec = new ND_FECollection(order, dim);
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
@@ -281,7 +266,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
|
||||
// 8. Determine the list of true essential boundary dofs. In this example,
|
||||
// 7. Determine the list of true essential boundary dofs. In this example,
|
||||
// the boundary conditions are defined based on the specific mesh and the
|
||||
// problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
@@ -323,12 +308,12 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
// 9. Setup Complex Operator convention
|
||||
// 8. Setup Complex Operator convention
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 10. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
// 9. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
VectorFunctionCoefficient f(dim, source);
|
||||
ComplexLinearForm b(fespace, conv);
|
||||
if (prob == load_src)
|
||||
@@ -338,7 +323,7 @@ int main(int argc, char *argv[])
|
||||
b.Vector::operator=(0.0);
|
||||
b.Assemble();
|
||||
|
||||
// 11. Define the solution vector x as a complex finite element grid function
|
||||
// 10. Define the solution vector x as a complex finite element grid function
|
||||
// corresponding to fespace.
|
||||
ComplexGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
@@ -346,7 +331,7 @@ int main(int argc, char *argv[])
|
||||
VectorFunctionCoefficient E_Im(dim, E_bdr_data_Im);
|
||||
x.ProjectBdrCoefficientTangent(E_Re, E_Im, ess_bdr);
|
||||
|
||||
// 12. Set up the sesquilinear form a(.,.)
|
||||
// 11. Set up the sesquilinear form a(.,.)
|
||||
//
|
||||
// In Comp
|
||||
// Domain: 1/mu (Curl E, Curl F) - omega^2 * epsilon (E,F)
|
||||
@@ -380,19 +365,19 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_omeg),NULL);
|
||||
|
||||
int cdim = (dim == 2) ? 1 : dim;
|
||||
PMLDiagMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
|
||||
PMLDiagMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
|
||||
ScalarVectorProductCoefficient c1_Re(muinv,pml_c1_Re);
|
||||
ScalarVectorProductCoefficient c1_Im(muinv,pml_c1_Im);
|
||||
VectorRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
|
||||
VectorRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
|
||||
PMLMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
|
||||
PMLMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
|
||||
ScalarMatrixProductCoefficient c1_Re(muinv,pml_c1_Re);
|
||||
ScalarMatrixProductCoefficient c1_Im(muinv,pml_c1_Im);
|
||||
MatrixRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
|
||||
MatrixRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
|
||||
|
||||
PMLDiagMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
|
||||
PMLDiagMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
|
||||
ScalarVectorProductCoefficient c2_Re(omeg,pml_c2_Re);
|
||||
ScalarVectorProductCoefficient c2_Im(omeg,pml_c2_Im);
|
||||
VectorRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
|
||||
VectorRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
|
||||
PMLMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
|
||||
PMLMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
|
||||
ScalarMatrixProductCoefficient c2_Re(omeg,pml_c2_Re);
|
||||
ScalarMatrixProductCoefficient c2_Im(omeg,pml_c2_Im);
|
||||
MatrixRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
|
||||
MatrixRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
|
||||
|
||||
// Integrators inside the PML region
|
||||
a.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_Re),
|
||||
@@ -400,29 +385,30 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_Re),
|
||||
new VectorFEMassIntegrator(restr_c2_Im));
|
||||
|
||||
// 13. Assemble the bilinear form and the corresponding linear system,
|
||||
// 12. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations such as: assembly, eliminating
|
||||
// boundary conditions, applying conforming constraints for
|
||||
// non-conforming AMR, etc.
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
#endif
|
||||
a.Assemble(0);
|
||||
a.Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
OperatorHandle Ah;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, Ah, X, B);
|
||||
|
||||
// 13. Transform to monolithic SparseMatrix
|
||||
SparseMatrix *A = Ah.As<ComplexSparseMatrix>()->GetSystemMatrix();
|
||||
|
||||
cout << "Size of linear system: " << A->Height() << endl;
|
||||
|
||||
// 14. Solve using a direct or an iterative solver
|
||||
#ifdef MFEM_USE_SUITESPARSE
|
||||
{
|
||||
if (pa) { cout << "PA not available with MFEM_USE_SUITESPARSE" << endl; }
|
||||
ComplexUMFPackSolver csolver(*A.As<ComplexSparseMatrix>());
|
||||
csolver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
csolver.SetPrintLevel(1);
|
||||
csolver.Mult(B, X);
|
||||
UMFPackSolver solver(*A);
|
||||
solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
solver.Mult(B, X);
|
||||
}
|
||||
#else
|
||||
|
||||
// 14a. Set up the Bilinear form a(.,.) for the preconditioner
|
||||
//
|
||||
// In Comp
|
||||
@@ -438,64 +424,45 @@ int main(int argc, char *argv[])
|
||||
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_muinv));
|
||||
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_absomeg));
|
||||
|
||||
PMLDiagMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
|
||||
ScalarVectorProductCoefficient c1_abs(muinv,pml_c1_abs);
|
||||
VectorRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
|
||||
PMLMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
|
||||
ScalarMatrixProductCoefficient c1_abs(muinv,pml_c1_abs);
|
||||
MatrixRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
|
||||
|
||||
PMLDiagMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
|
||||
ScalarVectorProductCoefficient c2_abs(absomeg,pml_c2_abs);
|
||||
VectorRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
|
||||
PMLMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
|
||||
ScalarMatrixProductCoefficient c2_abs(absomeg,pml_c2_abs);
|
||||
MatrixRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
|
||||
|
||||
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_abs));
|
||||
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_abs));
|
||||
|
||||
if (pa) { prec.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
prec.Assemble();
|
||||
|
||||
OperatorHandle PCOpAh;
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// 14b. Define and apply a GMRES solver for AU=B with a block diagonal
|
||||
// preconditioner based on the Gauss-Seidel or Jacobi sparse smoother.
|
||||
// preconditioner based on the Gauss-Seidel sparse smoother.
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = fespace->GetTrueVSize();
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
Operator *pc_r = nullptr;
|
||||
Operator *pc_i = nullptr;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
OperatorJacobiSmoother *d00 = new OperatorJacobiSmoother(prec, ess_tdof_list);
|
||||
ScaledOperator *d11 = new ScaledOperator(d00, s);
|
||||
pc_r = d00;
|
||||
pc_i = d11;
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorPtr PCOpAh;
|
||||
prec.SetDiagonalPolicy(mfem::Operator::DIAG_ONE);
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// Gauss-Seidel Smoother
|
||||
GSSmoother *gs00 = new GSSmoother(*PCOpAh.As<SparseMatrix>());
|
||||
ScaledOperator *gs11 = new ScaledOperator(gs00, s);
|
||||
pc_r = gs00;
|
||||
pc_i = gs11;
|
||||
}
|
||||
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, pc_r);
|
||||
BlockDP.SetDiagonalBlock(1, pc_i);
|
||||
GSSmoother gs00(*PCOpAh.As<SparseMatrix>());
|
||||
BlockDiagonalPreconditioner BlockGS(offsets);
|
||||
ScaledOperator gs11(&gs00,
|
||||
(conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0);
|
||||
BlockGS.SetDiagonalBlock(0,&gs00);
|
||||
BlockGS.SetDiagonalBlock(1,&gs11);
|
||||
|
||||
GMRESSolver gmres;
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(200);
|
||||
gmres.SetMaxIter(pa ? 5000 : 2000);
|
||||
gmres.SetMaxIter(2000);
|
||||
gmres.SetRelTol(1e-5);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(BlockDP);
|
||||
gmres.SetPreconditioner(BlockGS);
|
||||
gmres.Mult(B, X);
|
||||
}
|
||||
#endif
|
||||
@@ -507,8 +474,10 @@ int main(int argc, char *argv[])
|
||||
// If exact is known compute the error
|
||||
if (exact_known)
|
||||
{
|
||||
ComplexGridFunction x_gf(fespace);
|
||||
VectorFunctionCoefficient E_ex_Re(dim, E_exact_Re);
|
||||
VectorFunctionCoefficient E_ex_Im(dim, E_exact_Im);
|
||||
x_gf.ProjectCoefficient(E_ex_Re, E_ex_Im);
|
||||
int order_quad = max(2, 2 * order + 1);
|
||||
const IntegrationRule *irs[Geometry::NumGeom];
|
||||
for (int i = 0; i < Geometry::NumGeom; ++i)
|
||||
@@ -604,6 +573,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 18. Free the used memory.
|
||||
delete A;
|
||||
delete pml;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
@@ -801,7 +771,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -812,13 +782,14 @@ void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
det *= dxs[i];
|
||||
}
|
||||
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).real();
|
||||
M(i, i) = (det / pow(dxs[i], 2)).real();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -829,13 +800,14 @@ void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
det *= dxs[i];
|
||||
}
|
||||
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).imag();
|
||||
M(i, i) = (det / pow(dxs[i], 2)).imag();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -846,13 +818,14 @@ void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
det *= dxs[i];
|
||||
}
|
||||
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(det / pow(dxs[i], 2));
|
||||
M(i, i) = abs(det / pow(dxs[i], 2));
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -866,18 +839,19 @@ void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
// in the 2D case the coefficient is scalar 1/det(J)
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).real();
|
||||
M = (1.0 / det).real();
|
||||
}
|
||||
else
|
||||
{
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).real();
|
||||
M(i, i) = (pow(dxs[i], 2) / det).real();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -890,18 +864,19 @@ void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).imag();
|
||||
M = (1.0 / det).imag();
|
||||
}
|
||||
else
|
||||
{
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).imag();
|
||||
M(i, i) = (pow(dxs[i], 2) / det).imag();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -914,13 +889,14 @@ void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = abs(1.0 / det);
|
||||
M = abs(1.0 / det);
|
||||
}
|
||||
else
|
||||
{
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(pow(dxs[i], 2) / det);
|
||||
M(i, i) = abs(pow(dxs[i], 2) / det);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+93
-115
@@ -10,10 +10,6 @@
|
||||
// mpirun -np 4 ex25p -o 2 -f 8.0 -rs 2 -rp 2 -prob 4 -m ../data/inline-quad.mesh
|
||||
// mpirun -np 4 ex25p -o 2 -f 2.0 -rs 1 -rp 1 -prob 4 -m ../data/inline-hex.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex25p -o 1 -f 3.0 -rs 3 -rp 1 -prob 2 -pa -d cuda
|
||||
// mpirun -np 4 ex25p -o 2 -f 1.0 -rs 1 -rp 1 -prob 3 -pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple electromagnetic wave
|
||||
// propagation problem corresponding to the second order
|
||||
// indefinite Maxwell equation
|
||||
@@ -86,24 +82,24 @@ public:
|
||||
};
|
||||
|
||||
// Class for returning the PML coefficients of the bilinear form
|
||||
class PMLDiagMatrixCoefficient : public VectorCoefficient
|
||||
class PMLMatrixCoefficient : public MatrixCoefficient
|
||||
{
|
||||
private:
|
||||
CartesianPML * pml = nullptr;
|
||||
void (*Function)(const Vector &, CartesianPML * , Vector &);
|
||||
void (*Function)(const Vector &, CartesianPML * , DenseMatrix &);
|
||||
public:
|
||||
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
|
||||
Vector &),
|
||||
CartesianPML * pml_)
|
||||
: VectorCoefficient(dim), pml(pml_), Function(F)
|
||||
PMLMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
|
||||
DenseMatrix &),
|
||||
CartesianPML * pml_)
|
||||
: MatrixCoefficient(dim), pml(pml_), Function(F)
|
||||
{}
|
||||
virtual void Eval(Vector &K, ElementTransformation &T,
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
double x[3];
|
||||
Vector transip(x, 3);
|
||||
T.Transform(ip, transip);
|
||||
K.SetSize(vdim);
|
||||
K.SetSize(height, width);
|
||||
(*Function)(transip, pml, K);
|
||||
}
|
||||
};
|
||||
@@ -120,13 +116,13 @@ void source(const Vector &x, Vector & f);
|
||||
|
||||
// Functions for computing the necessary coefficients after PML stretching.
|
||||
// J is the Jacobian matrix of the stretching function
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
|
||||
|
||||
Array2D<double> comp_domain_bdr;
|
||||
Array2D<double> domain_bdr;
|
||||
@@ -164,8 +160,6 @@ int main(int argc, char *argv[])
|
||||
double freq = 5.0;
|
||||
bool herm_conv = true;
|
||||
bool visualization = 1;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -189,21 +183,12 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
|
||||
if (iprob > 4) { iprob = 4; }
|
||||
prob = (prob_type)iprob;
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 4. Setup the (serial) mesh on all processors.
|
||||
// 3. Setup the (serial) mesh on all processors.
|
||||
if (!mesh_file)
|
||||
{
|
||||
exact_known = true;
|
||||
@@ -251,7 +236,7 @@ int main(int argc, char *argv[])
|
||||
// Setup PML length
|
||||
Array2D<double> length(dim, 2); length = 0.0;
|
||||
|
||||
// 5. Setup the Cartesian PML region.
|
||||
// 4. Setup the Cartesian PML region.
|
||||
switch (prob)
|
||||
{
|
||||
case disc:
|
||||
@@ -277,13 +262,13 @@ int main(int argc, char *argv[])
|
||||
comp_domain_bdr = pml->GetCompDomainBdr();
|
||||
domain_bdr = pml->GetDomainBdr();
|
||||
|
||||
// 6. Refine the serial mesh on all processors to increase the resolution.
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 7. Define a parallel mesh by a partitioning of the serial mesh.
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
{
|
||||
@@ -293,13 +278,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 7a. Reorient mesh in case of a tet mesh
|
||||
// 6a. Reorient mesh in case of a tet mesh
|
||||
pmesh->ReorientTetMesh();
|
||||
|
||||
// 8. Set element attributes in order to distinguish elements in the PML
|
||||
// 7. Set element attributes in order to distinguish elements in the PML
|
||||
pml->SetAttributes(pmesh);
|
||||
|
||||
// 9. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// 8. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use the Nedelec finite elements of the specified order.
|
||||
FiniteElementCollection *fec = new ND_FECollection(order, dim);
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
@@ -309,9 +294,9 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 10. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// based on the specific mesh and the problem type.
|
||||
// 9. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// based on the specific mesh and the problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
@@ -351,11 +336,11 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
// 11. Setup Complex Operator convention
|
||||
// 10. Setup Complex Operator convention
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 12. Set up the parallel linear form b(.) which corresponds to the
|
||||
// 11. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
VectorFunctionCoefficient f(dim, source);
|
||||
ParComplexLinearForm b(fespace, conv);
|
||||
@@ -366,7 +351,7 @@ int main(int argc, char *argv[])
|
||||
b.Vector::operator=(0.0);
|
||||
b.Assemble();
|
||||
|
||||
// 13. Define the solution vector x as a parallel complex finite element grid
|
||||
// 12. Define the solution vector x as a parallel complex finite element grid
|
||||
// function corresponding to fespace.
|
||||
ParComplexGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
@@ -374,7 +359,7 @@ int main(int argc, char *argv[])
|
||||
VectorFunctionCoefficient E_Im(dim, E_bdr_data_Im);
|
||||
x.ProjectBdrCoefficientTangent(E_Re, E_Im, ess_bdr);
|
||||
|
||||
// 14. Set up the parallel sesquilinear form a(.,.)
|
||||
// 13. Set up the parallel sesquilinear form a(.,.)
|
||||
//
|
||||
// In Comp
|
||||
// Domain: 1/mu (Curl E, Curl F) - omega^2 * epsilon (E,F)
|
||||
@@ -408,19 +393,19 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_omeg),NULL);
|
||||
|
||||
int cdim = (dim == 2) ? 1 : dim;
|
||||
PMLDiagMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
|
||||
PMLDiagMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
|
||||
ScalarVectorProductCoefficient c1_Re(muinv,pml_c1_Re);
|
||||
ScalarVectorProductCoefficient c1_Im(muinv,pml_c1_Im);
|
||||
VectorRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
|
||||
VectorRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
|
||||
PMLMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
|
||||
PMLMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
|
||||
ScalarMatrixProductCoefficient c1_Re(muinv,pml_c1_Re);
|
||||
ScalarMatrixProductCoefficient c1_Im(muinv,pml_c1_Im);
|
||||
MatrixRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
|
||||
MatrixRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
|
||||
|
||||
PMLDiagMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
|
||||
PMLDiagMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
|
||||
ScalarVectorProductCoefficient c2_Re(omeg,pml_c2_Re);
|
||||
ScalarVectorProductCoefficient c2_Im(omeg,pml_c2_Im);
|
||||
VectorRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
|
||||
VectorRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
|
||||
PMLMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
|
||||
PMLMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
|
||||
ScalarMatrixProductCoefficient c2_Re(omeg,pml_c2_Re);
|
||||
ScalarMatrixProductCoefficient c2_Im(omeg,pml_c2_Im);
|
||||
MatrixRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
|
||||
MatrixRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
|
||||
|
||||
// Integrators inside the PML region
|
||||
a.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_Re),
|
||||
@@ -428,25 +413,27 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_Re),
|
||||
new VectorFEMassIntegrator(restr_c2_Im));
|
||||
|
||||
// 15. Assemble the parallel bilinear form and the corresponding linear
|
||||
// 14. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, etc.
|
||||
#ifndef MFEM_USE_SUPERLU
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
#endif
|
||||
a.Assemble();
|
||||
|
||||
OperatorPtr Ah;
|
||||
OperatorHandle Ah;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, Ah, X, B);
|
||||
|
||||
// 15. Transform to monolithic HypreParMatrix
|
||||
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Size of linear system: " << A->GetGlobalNumRows() << endl;
|
||||
}
|
||||
|
||||
// 16. Solve using a direct or an iterative solver
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
{
|
||||
if (pa) { cout << "PA not available with MFEM_USE_SUPERLU" << endl; }
|
||||
// Transform to monolithic HypreParMatrix
|
||||
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
|
||||
SuperLURowLocMatrix SA(*A);
|
||||
SuperLUSolver superlu(MPI_COMM_WORLD);
|
||||
superlu.SetPrintStatistics(false);
|
||||
@@ -454,9 +441,9 @@ int main(int argc, char *argv[])
|
||||
superlu.SetColumnPermutation(superlu::PARMETIS);
|
||||
superlu.SetOperator(SA);
|
||||
superlu.Mult(B, X);
|
||||
delete A;
|
||||
}
|
||||
#else
|
||||
|
||||
// 16a. Set up the parallel Bilinear form a(.,.) for the preconditioner
|
||||
//
|
||||
// In Comp
|
||||
@@ -472,20 +459,22 @@ int main(int argc, char *argv[])
|
||||
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_muinv));
|
||||
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_absomeg));
|
||||
|
||||
PMLDiagMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
|
||||
ScalarVectorProductCoefficient c1_abs(muinv,pml_c1_abs);
|
||||
VectorRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
|
||||
PMLMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
|
||||
ScalarMatrixProductCoefficient c1_abs(muinv,pml_c1_abs);
|
||||
MatrixRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
|
||||
|
||||
PMLDiagMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
|
||||
ScalarVectorProductCoefficient c2_abs(absomeg,pml_c2_abs);
|
||||
VectorRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
|
||||
PMLMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
|
||||
ScalarMatrixProductCoefficient c2_abs(absomeg,pml_c2_abs);
|
||||
MatrixRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
|
||||
|
||||
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_abs));
|
||||
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_abs));
|
||||
|
||||
if (pa) { prec.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
prec.Assemble();
|
||||
|
||||
OperatorHandle PCOpAh;
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// 16b. Define and apply a parallel GMRES solver for AU=B with a block
|
||||
// diagonal preconditioner based on hypre's AMS preconditioner.
|
||||
Array<int> offsets(3);
|
||||
@@ -494,41 +483,21 @@ int main(int argc, char *argv[])
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
Operator *pc_r = nullptr;
|
||||
Operator *pc_i = nullptr;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
OperatorJacobiSmoother *d00 = new OperatorJacobiSmoother(prec, ess_tdof_list);
|
||||
ScaledOperator *d11 = new ScaledOperator(d00, s);
|
||||
pc_r = d00;
|
||||
pc_i = d11;
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorPtr PCOpAh;
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// Hypre AMS
|
||||
HypreAMS *ams00 = new HypreAMS(*PCOpAh.As<HypreParMatrix>(), fespace);
|
||||
ScaledOperator *ams11 = new ScaledOperator(ams00, s);
|
||||
pc_r = ams00;
|
||||
pc_i = ams11;
|
||||
}
|
||||
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, pc_r);
|
||||
BlockDP.SetDiagonalBlock(1, pc_i);
|
||||
HypreAMS ams00(*PCOpAh.As<HypreParMatrix>(),fespace);
|
||||
BlockDiagonalPreconditioner BlockAMS(offsets);
|
||||
ScaledOperator ams11(&ams00,
|
||||
(conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0);
|
||||
BlockAMS.SetDiagonalBlock(0,&ams00);
|
||||
BlockAMS.SetDiagonalBlock(1,&ams11);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(200);
|
||||
gmres.SetMaxIter(pa ? 5000 : 2000);
|
||||
gmres.SetMaxIter(2000);
|
||||
gmres.SetRelTol(1e-5);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*Ah);
|
||||
gmres.SetPreconditioner(BlockDP);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(BlockAMS);
|
||||
gmres.Mult(B, X);
|
||||
}
|
||||
#endif
|
||||
@@ -540,8 +509,10 @@ int main(int argc, char *argv[])
|
||||
// If exact is known compute the error
|
||||
if (exact_known)
|
||||
{
|
||||
ParComplexGridFunction x_gf(fespace);
|
||||
VectorFunctionCoefficient E_ex_Re(dim, E_exact_Re);
|
||||
VectorFunctionCoefficient E_ex_Im(dim, E_exact_Im);
|
||||
x_gf.ProjectCoefficient(E_ex_Re, E_ex_Im);
|
||||
int order_quad = max(2, 2 * order + 1);
|
||||
const IntegrationRule *irs[Geometry::NumGeom];
|
||||
for (int i = 0; i < Geometry::NumGeom; ++i)
|
||||
@@ -658,6 +629,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 20. Free the used memory.
|
||||
delete A;
|
||||
delete pml;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
@@ -856,7 +828,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -867,13 +839,14 @@ void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
det *= dxs[i];
|
||||
}
|
||||
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).real();
|
||||
M(i, i) = (det / pow(dxs[i], 2)).real();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -884,13 +857,14 @@ void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
det *= dxs[i];
|
||||
}
|
||||
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).imag();
|
||||
M(i, i) = (det / pow(dxs[i], 2)).imag();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -901,13 +875,14 @@ void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
det *= dxs[i];
|
||||
}
|
||||
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(det / pow(dxs[i], 2));
|
||||
M(i, i) = abs(det / pow(dxs[i], 2));
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -921,18 +896,19 @@ void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
// in the 2D case the coefficient is scalar 1/det(J)
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).real();
|
||||
M = (1.0 / det).real();
|
||||
}
|
||||
else
|
||||
{
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).real();
|
||||
M(i, i) = (pow(dxs[i], 2) / det).real();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -945,18 +921,19 @@ void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).imag();
|
||||
M = (1.0 / det).imag();
|
||||
}
|
||||
else
|
||||
{
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).imag();
|
||||
M(i, i) = (pow(dxs[i], 2) / det).imag();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -969,13 +946,14 @@ void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = abs(1.0 / det);
|
||||
M = abs(1.0 / det);
|
||||
}
|
||||
else
|
||||
{
|
||||
M = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(pow(dxs[i], 2) / det);
|
||||
M(i, i) = abs(pow(dxs[i], 2) / det);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+17
-36
@@ -11,12 +11,6 @@
|
||||
// ex5 -m ../data/escher.mesh
|
||||
// ex5 -m ../data/fichera.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex5 -m ../data/star.mesh -pa -d cuda
|
||||
// ex5 -m ../data/star.mesh -pa -d raja-cuda
|
||||
// ex5 -m ../data/star.mesh -pa -d raja-omp
|
||||
// ex5 -m ../data/beam-hex.mesh -pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple 2D/3D mixed Darcy problem
|
||||
// corresponding to the saddle point system
|
||||
// k*u + grad p = f
|
||||
@@ -56,7 +50,6 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -66,8 +59,6 @@ int main(int argc, char *argv[])
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
@@ -79,18 +70,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 10,000
|
||||
// elements.
|
||||
@@ -103,7 +89,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use the
|
||||
// 4. Define a finite element space on the mesh. Here we use the
|
||||
// Raviart-Thomas finite elements of the specified order.
|
||||
FiniteElementCollection *hdiv_coll(new RT_FECollection(order, dim));
|
||||
FiniteElementCollection *l2_coll(new L2_FECollection(order, dim));
|
||||
@@ -111,7 +97,7 @@ int main(int argc, char *argv[])
|
||||
FiniteElementSpace *R_space = new FiniteElementSpace(mesh, hdiv_coll);
|
||||
FiniteElementSpace *W_space = new FiniteElementSpace(mesh, l2_coll);
|
||||
|
||||
// 6. Define the BlockStructure of the problem, i.e. define the array of
|
||||
// 5. Define the BlockStructure of the problem, i.e. define the array of
|
||||
// offsets for each variable. The last component of the Array is the sum
|
||||
// of the dimensions of each block.
|
||||
Array<int> block_offsets(3); // number of variables + 1
|
||||
@@ -126,7 +112,7 @@ int main(int argc, char *argv[])
|
||||
std::cout << "dim(R+W) = " << block_offsets.Last() << "\n";
|
||||
std::cout << "***********************************************************\n";
|
||||
|
||||
// 7. Define the coefficients, analytical solution, and rhs of the PDE.
|
||||
// 6. Define the coefficients, analytical solution, and rhs of the PDE.
|
||||
ConstantCoefficient k(1.0);
|
||||
|
||||
VectorFunctionCoefficient fcoeff(dim, fFun);
|
||||
@@ -136,28 +122,25 @@ int main(int argc, char *argv[])
|
||||
VectorFunctionCoefficient ucoeff(dim, uFun_ex);
|
||||
FunctionCoefficient pcoeff(pFun_ex);
|
||||
|
||||
// 8. Allocate memory (x, rhs) for the analytical solution and the right hand
|
||||
// 7. Allocate memory (x, rhs) for the analytical solution and the right hand
|
||||
// side. Define the GridFunction u,p for the finite element solution and
|
||||
// linear forms fform and gform for the right hand side. The data
|
||||
// allocated by x and rhs are passed as a reference to the grid functions
|
||||
// (u,p) and the linear forms (fform, gform).
|
||||
MemoryType mt = device.GetMemoryType();
|
||||
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
|
||||
BlockVector x(block_offsets), rhs(block_offsets);
|
||||
|
||||
LinearForm *fform(new LinearForm);
|
||||
fform->Update(R_space, rhs.GetBlock(0), 0);
|
||||
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(fcoeff));
|
||||
fform->AddBoundaryIntegrator(new VectorFEBoundaryFluxLFIntegrator(fnatcoeff));
|
||||
fform->Assemble();
|
||||
fform->SyncAliasMemory(rhs);
|
||||
|
||||
LinearForm *gform(new LinearForm);
|
||||
gform->Update(W_space, rhs.GetBlock(1), 0);
|
||||
gform->AddDomainIntegrator(new DomainLFIntegrator(gcoeff));
|
||||
gform->Assemble();
|
||||
gform->SyncAliasMemory(rhs);
|
||||
|
||||
// 9. Assemble the finite element matrices for the Darcy operator
|
||||
// 8. Assemble the finite element matrices for the Darcy operator
|
||||
//
|
||||
// D = [ M B^T ]
|
||||
// [ B 0 ]
|
||||
@@ -202,7 +185,7 @@ int main(int argc, char *argv[])
|
||||
darcyOp.SetBlock(1,0, &B);
|
||||
}
|
||||
|
||||
// 10. Construct the operators for preconditioner
|
||||
// 9. Construct the operators for preconditioner
|
||||
//
|
||||
// P = [ diag(M) 0 ]
|
||||
// [ 0 B diag(M)^-1 B^T ]
|
||||
@@ -219,11 +202,10 @@ int main(int argc, char *argv[])
|
||||
if (pa)
|
||||
{
|
||||
mVarf->AssembleDiagonal(Md);
|
||||
auto Md_host = Md.HostRead();
|
||||
Vector invMd(mVarf->Height());
|
||||
for (int i=0; i<mVarf->Height(); ++i)
|
||||
{
|
||||
invMd(i) = 1.0 / Md_host[i];
|
||||
invMd(i) = 1.0 / Md(i);
|
||||
}
|
||||
|
||||
Vector BMBt_diag(bVarf->Height());
|
||||
@@ -264,7 +246,7 @@ int main(int argc, char *argv[])
|
||||
darcyPrec.SetDiagonalBlock(0, invM);
|
||||
darcyPrec.SetDiagonalBlock(1, invS);
|
||||
|
||||
// 11. Solve the linear system with MINRES.
|
||||
// 10. Solve the linear system with MINRES.
|
||||
// Check the norm of the unpreconditioned residual.
|
||||
int maxIter(1000);
|
||||
double rtol(1.e-6);
|
||||
@@ -281,7 +263,6 @@ int main(int argc, char *argv[])
|
||||
solver.SetPrintLevel(1);
|
||||
x = 0.0;
|
||||
solver.Mult(rhs, x);
|
||||
if (device.IsEnabled()) { x.HostRead(); }
|
||||
chrono.Stop();
|
||||
|
||||
if (solver.GetConverged())
|
||||
@@ -292,7 +273,7 @@ int main(int argc, char *argv[])
|
||||
<< " iterations. Residual norm is " << solver.GetFinalNorm() << ".\n";
|
||||
std::cout << "MINRES solver took " << chrono.RealTime() << "s. \n";
|
||||
|
||||
// 12. Create the grid functions u and p. Compute the L2 error norms.
|
||||
// 11. Create the grid functions u and p. Compute the L2 error norms.
|
||||
GridFunction u, p;
|
||||
u.MakeRef(R_space, x.GetBlock(0), 0);
|
||||
p.MakeRef(W_space, x.GetBlock(1), 0);
|
||||
@@ -312,7 +293,7 @@ int main(int argc, char *argv[])
|
||||
std::cout << "|| u_h - u_ex || / || u_ex || = " << err_u / norm_u << "\n";
|
||||
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
|
||||
|
||||
// 13. Save the mesh and the solution. This output can be viewed later using
|
||||
// 12. Save the mesh and the solution. This output can be viewed later using
|
||||
// GLVis: "glvis -m ex5.mesh -g sol_u.gf" or "glvis -m ex5.mesh -g
|
||||
// sol_p.gf".
|
||||
{
|
||||
@@ -329,13 +310,13 @@ int main(int argc, char *argv[])
|
||||
p.Save(p_ofs);
|
||||
}
|
||||
|
||||
// 14. Save data in the VisIt format
|
||||
// 13. Save data in the VisIt format
|
||||
VisItDataCollection visit_dc("Example5", mesh);
|
||||
visit_dc.RegisterField("velocity", &u);
|
||||
visit_dc.RegisterField("pressure", &p);
|
||||
visit_dc.Save();
|
||||
|
||||
// 15. Save data in the ParaView format
|
||||
// 14. Save data in the ParaView format
|
||||
ParaViewDataCollection paraview_dc("Example5", mesh);
|
||||
paraview_dc.SetPrefixPath("ParaView");
|
||||
paraview_dc.SetLevelsOfDetail(order);
|
||||
@@ -347,7 +328,7 @@ int main(int argc, char *argv[])
|
||||
paraview_dc.RegisterField("pressure",&p);
|
||||
paraview_dc.Save();
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
// 15. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -360,7 +341,7 @@ int main(int argc, char *argv[])
|
||||
p_sock << "solution\n" << *mesh << p << "window_title 'Pressure'" << endl;
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
// 16. Free the used memory.
|
||||
delete fform;
|
||||
delete gform;
|
||||
delete invM;
|
||||
|
||||
+21
-42
@@ -11,12 +11,6 @@
|
||||
// mpirun -np 4 ex5p -m ../data/escher.mesh
|
||||
// mpirun -np 4 ex5p -m ../data/fichera.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex5p -m ../data/star.mesh -r 2 -pa -d cuda
|
||||
// mpirun -np 4 ex5p -m ../data/star.mesh -r 2 -pa -d raja-cuda
|
||||
// mpirun -np 4 ex5p -m ../data/star.mesh -r 2 -pa -d raja-omp
|
||||
// mpirun -np 4 ex5p -m ../data/beam-hex.mesh -pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple 2D/3D mixed Darcy problem
|
||||
// corresponding to the saddle point system
|
||||
// k*u + grad p = f
|
||||
@@ -66,7 +60,6 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool par_format = false;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
bool adios2 = false;
|
||||
|
||||
@@ -82,8 +75,6 @@ int main(int argc, char *argv[])
|
||||
"Format to use when saving the results for VisIt.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
@@ -105,18 +96,13 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
// 'ref_levels' to be the largest number that gives a final mesh with no
|
||||
// more than 10,000 elements, unless the user specifies it as input.
|
||||
@@ -132,7 +118,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
@@ -145,7 +131,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use the Raviart-Thomas finite elements of the specified order.
|
||||
FiniteElementCollection *hdiv_coll(new RT_FECollection(order, dim));
|
||||
FiniteElementCollection *l2_coll(new L2_FECollection(order, dim));
|
||||
@@ -165,7 +151,7 @@ int main(int argc, char *argv[])
|
||||
std::cout << "***********************************************************\n";
|
||||
}
|
||||
|
||||
// 8. Define the two BlockStructure of the problem. block_offsets is used
|
||||
// 7. Define the two BlockStructure of the problem. block_offsets is used
|
||||
// for Vector based on dof (like ParGridFunction or ParLinearForm),
|
||||
// block_trueOffstes is used for Vector based on trueDof (HypreParVector
|
||||
// for the rhs and solution of the linear system). The offsets computed
|
||||
@@ -182,7 +168,7 @@ int main(int argc, char *argv[])
|
||||
block_trueOffsets[2] = W_space->TrueVSize();
|
||||
block_trueOffsets.PartialSum();
|
||||
|
||||
// 9. Define the coefficients, analytical solution, and rhs of the PDE.
|
||||
// 8. Define the coefficients, analytical solution, and rhs of the PDE.
|
||||
ConstantCoefficient k(1.0);
|
||||
|
||||
VectorFunctionCoefficient fcoeff(dim, fFun);
|
||||
@@ -192,30 +178,25 @@ int main(int argc, char *argv[])
|
||||
VectorFunctionCoefficient ucoeff(dim, uFun_ex);
|
||||
FunctionCoefficient pcoeff(pFun_ex);
|
||||
|
||||
// 10. Define the parallel grid function and parallel linear forms, solution
|
||||
// vector and rhs.
|
||||
MemoryType mt = device.GetMemoryType();
|
||||
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
|
||||
BlockVector trueX(block_trueOffsets, mt), trueRhs(block_trueOffsets, mt);
|
||||
// 9. Define the parallel grid function and parallel linear forms, solution
|
||||
// vector and rhs.
|
||||
BlockVector x(block_offsets), rhs(block_offsets);
|
||||
BlockVector trueX(block_trueOffsets), trueRhs(block_trueOffsets);
|
||||
|
||||
ParLinearForm *fform(new ParLinearForm);
|
||||
fform->Update(R_space, rhs.GetBlock(0), 0);
|
||||
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(fcoeff));
|
||||
fform->AddBoundaryIntegrator(new VectorFEBoundaryFluxLFIntegrator(fnatcoeff));
|
||||
fform->Assemble();
|
||||
fform->SyncAliasMemory(rhs);
|
||||
fform->ParallelAssemble(trueRhs.GetBlock(0));
|
||||
trueRhs.GetBlock(0).SyncAliasMemory(trueRhs);
|
||||
|
||||
ParLinearForm *gform(new ParLinearForm);
|
||||
gform->Update(W_space, rhs.GetBlock(1), 0);
|
||||
gform->AddDomainIntegrator(new DomainLFIntegrator(gcoeff));
|
||||
gform->Assemble();
|
||||
gform->SyncAliasMemory(rhs);
|
||||
gform->ParallelAssemble(trueRhs.GetBlock(1));
|
||||
trueRhs.GetBlock(1).SyncAliasMemory(trueRhs);
|
||||
|
||||
// 11. Assemble the finite element matrices for the Darcy operator
|
||||
// 10. Assemble the finite element matrices for the Darcy operator
|
||||
//
|
||||
// D = [ M B^T ]
|
||||
// [ B 0 ]
|
||||
@@ -268,7 +249,7 @@ int main(int argc, char *argv[])
|
||||
darcyOp->SetBlock(1,0, B);
|
||||
}
|
||||
|
||||
// 12. Construct the operators for preconditioner
|
||||
// 11. Construct the operators for preconditioner
|
||||
//
|
||||
// P = [ diag(M) 0 ]
|
||||
// [ 0 B diag(M)^-1 B^T ]
|
||||
@@ -285,11 +266,10 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
Md_PA.SetSize(R_space->GetTrueVSize());
|
||||
mVarf->AssembleDiagonal(Md_PA);
|
||||
auto Md_host = Md_PA.HostRead();
|
||||
Vector invMd(Md_PA.Size());
|
||||
for (int i=0; i<Md_PA.Size(); ++i)
|
||||
{
|
||||
invMd(i) = 1.0 / Md_host[i];
|
||||
invMd(i) = 1.0 / Md_PA(i);
|
||||
}
|
||||
|
||||
Vector BMBt_diag(W_space->GetTrueVSize());
|
||||
@@ -322,7 +302,7 @@ int main(int argc, char *argv[])
|
||||
darcyPr->SetDiagonalBlock(0, invM);
|
||||
darcyPr->SetDiagonalBlock(1, invS);
|
||||
|
||||
// 13. Solve the linear system with MINRES.
|
||||
// 12. Solve the linear system with MINRES.
|
||||
// Check the norm of the unpreconditioned residual.
|
||||
int maxIter(pa ? 1000 : 500);
|
||||
double rtol(1.e-6);
|
||||
@@ -339,7 +319,6 @@ int main(int argc, char *argv[])
|
||||
solver.SetPrintLevel(verbose);
|
||||
trueX = 0.0;
|
||||
solver.Mult(trueRhs, trueX);
|
||||
if (device.IsEnabled()) { trueX.HostRead(); }
|
||||
chrono.Stop();
|
||||
|
||||
if (verbose)
|
||||
@@ -353,7 +332,7 @@ int main(int argc, char *argv[])
|
||||
std::cout << "MINRES solver took " << chrono.RealTime() << "s. \n";
|
||||
}
|
||||
|
||||
// 14. Extract the parallel grid function corresponding to the finite element
|
||||
// 13. Extract the parallel grid function corresponding to the finite element
|
||||
// approximation X. This is the local solution on each processor. Compute
|
||||
// L2 error norms.
|
||||
ParGridFunction *u(new ParGridFunction);
|
||||
@@ -381,7 +360,7 @@ int main(int argc, char *argv[])
|
||||
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
|
||||
}
|
||||
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can be
|
||||
// 14. Save the refined mesh and the solution in parallel. This output can be
|
||||
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol_*".
|
||||
{
|
||||
ostringstream mesh_name, u_name, p_name;
|
||||
@@ -402,7 +381,7 @@ int main(int argc, char *argv[])
|
||||
p->Save(p_ofs);
|
||||
}
|
||||
|
||||
// 16. Save data in the VisIt format
|
||||
// 15. Save data in the VisIt format
|
||||
VisItDataCollection visit_dc("Example5-Parallel", pmesh);
|
||||
visit_dc.RegisterField("velocity", u);
|
||||
visit_dc.RegisterField("pressure", p);
|
||||
@@ -411,7 +390,7 @@ int main(int argc, char *argv[])
|
||||
DataCollection::PARALLEL_FORMAT);
|
||||
visit_dc.Save();
|
||||
|
||||
// 17. Save data in the ParaView format
|
||||
// 16. Save data in the ParaView format
|
||||
ParaViewDataCollection paraview_dc("Example5P", pmesh);
|
||||
paraview_dc.SetPrefixPath("ParaView");
|
||||
paraview_dc.SetLevelsOfDetail(order);
|
||||
@@ -423,7 +402,7 @@ int main(int argc, char *argv[])
|
||||
paraview_dc.RegisterField("pressure",p);
|
||||
paraview_dc.Save();
|
||||
|
||||
// 18. Optionally output a BP (binary pack) file using ADIOS2. This can be
|
||||
// 17. Optionally output a BP (binary pack) file using ADIOS2. This can be
|
||||
// visualized with the ParaView VTX reader.
|
||||
#ifdef MFEM_USE_ADIOS2
|
||||
if (adios2)
|
||||
@@ -443,7 +422,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
#endif
|
||||
|
||||
// 19. Send the solution by socket to a GLVis server.
|
||||
// 18. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -463,7 +442,7 @@ int main(int argc, char *argv[])
|
||||
<< endl;
|
||||
}
|
||||
|
||||
// 20. Free the used memory.
|
||||
// 19. Free the used memory.
|
||||
delete fform;
|
||||
delete gform;
|
||||
delete u;
|
||||
|
||||
+1
-1
@@ -20,7 +20,7 @@
|
||||
// ex6 -pa -d occa-cuda
|
||||
// ex6 -pa -d raja-omp
|
||||
// ex6 -pa -d ceed-cpu
|
||||
// * ex6 -pa -d ceed-cuda
|
||||
// * ex6 -pa -d ceed-cuda
|
||||
// ex6 -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
//
|
||||
// Description: This is a version of Example 1 with a simple adaptive mesh
|
||||
|
||||
+1
-1
@@ -20,7 +20,7 @@
|
||||
// mpirun -np 4 ex6p -pa -d occa-cuda
|
||||
// mpirun -np 4 ex6p -pa -d raja-omp
|
||||
// mpirun -np 4 ex6p -pa -d ceed-cpu
|
||||
// * mpirun -np 4 ex6p -pa -d ceed-cuda
|
||||
// * mpirun -np 4 ex6p -pa -d ceed-cuda
|
||||
// mpirun -np 4 ex6p -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
//
|
||||
// Description: This is a version of Example 1 with a simple adaptive mesh
|
||||
|
||||
+9
-18
@@ -20,11 +20,8 @@
|
||||
// Device sample runs:
|
||||
// ex9 -pa
|
||||
// ex9 -ea
|
||||
// ex9 -fa
|
||||
// ex9 -pa -m ../data/periodic-cube.mesh
|
||||
// ex9 -pa -m ../data/periodic-cube.mesh -d cuda
|
||||
// ex9 -ea -m ../data/periodic-cube.mesh -d cuda
|
||||
// ex9 -fa -m ../data/periodic-cube.mesh -d cuda
|
||||
//
|
||||
// Description: This example code solves the time-dependent advection equation
|
||||
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
|
||||
@@ -147,7 +144,6 @@ int main(int argc, char *argv[])
|
||||
int order = 3;
|
||||
bool pa = false;
|
||||
bool ea = false;
|
||||
bool fa = false;
|
||||
const char *device_config = "cpu";
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 10.0;
|
||||
@@ -174,8 +170,6 @@ int main(int argc, char *argv[])
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&ea, "-ea", "--element-assembly", "-no-ea",
|
||||
"--no-element-assembly", "Enable Element Assembly.");
|
||||
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
|
||||
"--no-full-assembly", "Enable Full Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
@@ -284,11 +278,6 @@ int main(int argc, char *argv[])
|
||||
m.SetAssemblyLevel(AssemblyLevel::ELEMENT);
|
||||
k.SetAssemblyLevel(AssemblyLevel::ELEMENT);
|
||||
}
|
||||
else if (fa)
|
||||
{
|
||||
m.SetAssemblyLevel(AssemblyLevel::FULL);
|
||||
k.SetAssemblyLevel(AssemblyLevel::FULL);
|
||||
}
|
||||
m.AddDomainIntegrator(new MassIntegrator);
|
||||
k.AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
|
||||
k.AddInteriorFaceIntegrator(
|
||||
@@ -448,19 +437,21 @@ int main(int argc, char *argv[])
|
||||
FE_Evolution::FE_Evolution(BilinearForm &_M, BilinearForm &_K, const Vector &_b)
|
||||
: TimeDependentOperator(_M.Height()), M(_M), K(_K), b(_b), z(_M.Height())
|
||||
{
|
||||
bool pa = M.GetAssemblyLevel() == AssemblyLevel::PARTIAL;
|
||||
bool ea = M.GetAssemblyLevel() == AssemblyLevel::ELEMENT;
|
||||
Array<int> ess_tdof_list;
|
||||
if (M.GetAssemblyLevel() == AssemblyLevel::LEGACYFULL)
|
||||
{
|
||||
M_prec = new DSmoother(M.SpMat());
|
||||
M_solver.SetOperator(M.SpMat());
|
||||
dg_solver = new DG_Solver(M.SpMat(), K.SpMat(), *M.FESpace());
|
||||
}
|
||||
else
|
||||
if (pa || ea)
|
||||
{
|
||||
M_prec = new OperatorJacobiSmoother(M, ess_tdof_list);
|
||||
M_solver.SetOperator(M);
|
||||
dg_solver = NULL;
|
||||
}
|
||||
else
|
||||
{
|
||||
M_prec = new DSmoother(M.SpMat());
|
||||
dg_solver = new DG_Solver(M.SpMat(), K.SpMat(), *M.FESpace());
|
||||
M_solver.SetOperator(M.SpMat());
|
||||
}
|
||||
M_solver.SetPreconditioner(*M_prec);
|
||||
M_solver.iterative_mode = false;
|
||||
M_solver.SetRelTol(1e-9);
|
||||
|
||||
+15
-24
@@ -21,11 +21,8 @@
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex9p -pa
|
||||
// mpirun -np 4 ex9p -ea
|
||||
// mpirun -np 4 ex9p -fa
|
||||
// mpirun -np 4 ex9p -pa -m ../data/periodic-cube.mesh
|
||||
// mpirun -np 4 ex9p -pa -m ../data/periodic-cube.mesh -d cuda
|
||||
// mpirun -np 4 ex9p -ea -m ../data/periodic-cube.mesh -d cuda
|
||||
// mpirun -np 4 ex9p -fa -m ../data/periodic-cube.mesh -d cuda
|
||||
//
|
||||
// Description: This example code solves the time-dependent advection equation
|
||||
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
|
||||
@@ -167,7 +164,6 @@ int main(int argc, char *argv[])
|
||||
int order = 3;
|
||||
bool pa = false;
|
||||
bool ea = false;
|
||||
bool fa = false;
|
||||
const char *device_config = "cpu";
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 10.0;
|
||||
@@ -197,8 +193,6 @@ int main(int argc, char *argv[])
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&ea, "-ea", "--element-assembly", "-no-ea",
|
||||
"--no-element-assembly", "Enable Element Assembly.");
|
||||
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
|
||||
"--no-full-assembly", "Enable Full Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
@@ -335,12 +329,6 @@ int main(int argc, char *argv[])
|
||||
m->SetAssemblyLevel(AssemblyLevel::ELEMENT);
|
||||
k->SetAssemblyLevel(AssemblyLevel::ELEMENT);
|
||||
}
|
||||
else if (fa)
|
||||
{
|
||||
m->SetAssemblyLevel(AssemblyLevel::FULL);
|
||||
k->SetAssemblyLevel(AssemblyLevel::FULL);
|
||||
}
|
||||
|
||||
m->AddDomainIntegrator(new MassIntegrator);
|
||||
k->AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
|
||||
k->AddInteriorFaceIntegrator(
|
||||
@@ -577,21 +565,29 @@ FE_Evolution::FE_Evolution(ParBilinearForm &_M, ParBilinearForm &_K,
|
||||
M_solver(_M.ParFESpace()->GetComm()),
|
||||
z(_M.Height())
|
||||
{
|
||||
if (_M.GetAssemblyLevel()==AssemblyLevel::LEGACYFULL)
|
||||
{
|
||||
M.Reset(_M.ParallelAssemble(), true);
|
||||
K.Reset(_K.ParallelAssemble(), true);
|
||||
}
|
||||
else
|
||||
bool pa = _M.GetAssemblyLevel()==AssemblyLevel::PARTIAL;
|
||||
bool ea = _M.GetAssemblyLevel()==AssemblyLevel::ELEMENT;
|
||||
|
||||
if (pa || ea)
|
||||
{
|
||||
M.Reset(&_M, false);
|
||||
K.Reset(&_K, false);
|
||||
}
|
||||
else
|
||||
{
|
||||
M.Reset(_M.ParallelAssemble(), true);
|
||||
K.Reset(_K.ParallelAssemble(), true);
|
||||
}
|
||||
|
||||
M_solver.SetOperator(*M);
|
||||
|
||||
Array<int> ess_tdof_list;
|
||||
if (_M.GetAssemblyLevel()==AssemblyLevel::LEGACYFULL)
|
||||
if (pa || ea)
|
||||
{
|
||||
M_prec = new OperatorJacobiSmoother(_M, ess_tdof_list);
|
||||
dg_solver = NULL;
|
||||
}
|
||||
else
|
||||
{
|
||||
HypreParMatrix &M_mat = *M.As<HypreParMatrix>();
|
||||
HypreParMatrix &K_mat = *K.As<HypreParMatrix>();
|
||||
@@ -600,11 +596,6 @@ FE_Evolution::FE_Evolution(ParBilinearForm &_M, ParBilinearForm &_K,
|
||||
|
||||
dg_solver = new DG_Solver(M_mat, K_mat, *_M.FESpace());
|
||||
}
|
||||
else
|
||||
{
|
||||
M_prec = new OperatorJacobiSmoother(_M, ess_tdof_list);
|
||||
dg_solver = NULL;
|
||||
}
|
||||
|
||||
M_solver.SetPreconditioner(*M_prec);
|
||||
M_solver.iterative_mode = false;
|
||||
|
||||
@@ -114,11 +114,6 @@ ex11p-test-strumpack: ex11p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), STRUMPACK example,--strumpack)
|
||||
test-par-YES: ex11p-test-strumpack
|
||||
endif
|
||||
ifeq ($(MFEM_USE_SUPERLU),YES)
|
||||
ex11p-test-superlu: ex11p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), SuperLU_DIST example,--superlu)
|
||||
test-par-YES: ex11p-test-superlu
|
||||
endif
|
||||
|
||||
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
|
||||
|
||||
|
||||
@@ -34,15 +34,6 @@ if (MFEM_USE_MPI)
|
||||
)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_SLEPC)
|
||||
list(APPEND PETSC_EXAMPLES_SRCS
|
||||
ex11p.cpp
|
||||
)
|
||||
list(APPEND PETSC_RC_FILES
|
||||
rc_ex11p_lobpcg rc_ex11p_gd
|
||||
)
|
||||
endif()
|
||||
|
||||
# Include the source directory where mfem.hpp and mfem-performance.hpp are.
|
||||
include_directories(BEFORE ${PROJECT_BINARY_DIR})
|
||||
|
||||
@@ -87,22 +78,12 @@ set(EX9_E_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts
|
||||
set(EX9_ES_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl --no-step)
|
||||
set(EX9_IS_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_impl --implicit -tf 0.5)
|
||||
set(EX10_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p -tf 30 -s 3 -rs 2 -dt 3)
|
||||
if (MFEM_USE_SLEPC)
|
||||
set(EX11_ARGS_SINV -m ../../data/star.mesh --useslepc)
|
||||
set(EX11_ARGS_LOBPCG -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg)
|
||||
set(EX11_ARGS_GD -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_gd)
|
||||
endif()
|
||||
|
||||
# Add the tests: one test per command-line-variable.
|
||||
set(TEST_OPTIONS_VARS
|
||||
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
|
||||
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
|
||||
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
|
||||
if (MFEM_USE_SLEPC)
|
||||
list(APPEND TEST_OPTIONS_VARS EX11_ARGS_SINV EX11_ARGS_LOBPCG EX11_ARGS_GD)
|
||||
endif()
|
||||
|
||||
foreach(TEST_OPTIONS_VAR ${TEST_OPTIONS_VARS})
|
||||
foreach(TEST_OPTIONS_VAR
|
||||
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
|
||||
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
|
||||
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
|
||||
string(REGEX REPLACE "^(.+)_ARGS" "\\1" TEST_NAME_UC ${TEST_OPTIONS_VAR})
|
||||
string(REGEX REPLACE "^([^_]+)" "\\1P" TEST_NAME_UC ${TEST_NAME_UC})
|
||||
string(TOLOWER ${TEST_NAME_UC} TEST_NAME_FULL)
|
||||
|
||||
@@ -1,440 +0,0 @@
|
||||
// MFEM Example 11 - Parallel Version
|
||||
// PETSc Modification
|
||||
//
|
||||
// Compile with: make ex11p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex11p -m ../../data/star.mesh
|
||||
// mpirun -np 4 ex11p -m ../../data/star.mesh --slepcopts rc_ex11p_lobpcg
|
||||
// mpirun -np 4 ex11p -m ../../data/star.mesh --slepcopts rc_ex11p_gd
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve the
|
||||
// eigenvalue problem -Delta u = lambda u with homogeneous
|
||||
// Dirichlet boundary conditions.
|
||||
//
|
||||
// We compute a number of the lowest eigenmodes by discretizing
|
||||
// the Laplacian and Mass operators using a FE space of the
|
||||
// specified order, or an isoparametric/isogeometric space if
|
||||
// order < 1 (quadratic for quadratic curvilinear mesh, NURBS for
|
||||
// NURBS mesh, etc.)
|
||||
//
|
||||
// The example demonstrates the use of the SLEPc eigensolver as an
|
||||
// alternative to the LOBPCG eigenvalue solver. The shift and
|
||||
// invert spectral transformation is used to help the convergence
|
||||
// to the smaller eigenvalues. Alternative solver parameters can
|
||||
// be passed in a file with "-slepcopts".
|
||||
//
|
||||
// Reusing a single GLVis visualization window for multiple
|
||||
// eigenfunctions is also illustrated.
|
||||
//
|
||||
// We recommend viewing Example 1 before viewing this example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
#ifndef MFEM_USE_SLEPC
|
||||
#error This examples requires that MFEM is build with MFEM_USE_SLEPC=YES
|
||||
#endif
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI.
|
||||
int num_procs, myid;
|
||||
MPI_Init(&argc, &argv);
|
||||
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
|
||||
|
||||
// 2. Parse command-line options.
|
||||
const char *mesh_file = "../../data/star.mesh";
|
||||
int ser_ref_levels = 2;
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
int nev = 5;
|
||||
int seed = 75;
|
||||
bool slu_solver = false;
|
||||
bool sp_solver = false;
|
||||
bool visualization = 1;
|
||||
bool use_slepc = true;
|
||||
const char *slepcrc_file = "";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
|
||||
"Number of times to refine the mesh uniformly in serial.");
|
||||
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
|
||||
"Number of times to refine the mesh uniformly in parallel.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) or -1 for"
|
||||
" isoparametric space.");
|
||||
args.AddOption(&nev, "-n", "--num-eigs",
|
||||
"Number of desired eigenmodes.");
|
||||
args.AddOption(&seed, "-s", "--seed",
|
||||
"Random seed used to initialize LOBPCG.");
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
args.AddOption(&slu_solver, "-slu", "--superlu", "-no-slu",
|
||||
"--no-superlu", "Use the SuperLU Solver.");
|
||||
#endif
|
||||
#ifdef MFEM_USE_STRUMPACK
|
||||
args.AddOption(&sp_solver, "-sp", "--strumpack", "-no-sp",
|
||||
"--no-strumpack", "Use the STRUMPACK Solver.");
|
||||
#endif
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&use_slepc, "-useslepc","--useslepc","-no-slepc",
|
||||
"--no-slepc","Use or not SLEPc to solve the eigenvalue problem");
|
||||
args.AddOption(&slepcrc_file, "-slepcopts", "--slepcopts",
|
||||
"SlepcOptions file to use.");
|
||||
args.Parse();
|
||||
if (slu_solver && sp_solver)
|
||||
{
|
||||
if (myid == 0)
|
||||
cout << "WARNING: Both SuperLU and STRUMPACK have been selected,"
|
||||
<< " please choose either one." << endl
|
||||
<< " Defaulting to SuperLU." << endl;
|
||||
sp_solver = false;
|
||||
}
|
||||
// The command line options are also passed to the STRUMPACK
|
||||
// solver. So do not exit if some options are not recognized.
|
||||
if (!sp_solver)
|
||||
{
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 1;
|
||||
}
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 2b. We initialize SLEPc. This internally initializes PETSc as well.
|
||||
MFEMInitializeSlepc(NULL,NULL,slepcrc_file,NULL);
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement (2 by default, or
|
||||
// specified on the command line with -rs).
|
||||
for (int lev = 0; lev < ser_ref_levels; lev++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution (1 time by
|
||||
// default, or specified on the command line with -rp). Once the parallel
|
||||
// mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
for (int lev = 0; lev < par_ref_levels; lev++)
|
||||
{
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange finite elements of the specified order. If
|
||||
// order < 1, we instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim);
|
||||
}
|
||||
else if (pmesh->GetNodes())
|
||||
{
|
||||
fec = pmesh->GetNodes()->OwnFEC();
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
}
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_Int size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7. Set up the parallel bilinear forms a(.,.) and m(.,.) on the finite
|
||||
// element space. The first corresponds to the Laplacian operator -Delta,
|
||||
// while the second is a simple mass matrix needed on the right hand side
|
||||
// of the generalized eigenvalue problem below. The boundary conditions
|
||||
// are implemented by elimination with special values on the diagonal to
|
||||
// shift the Dirichlet eigenvalues out of the computational range. After
|
||||
// serial and parallel assembly we extract the corresponding parallel
|
||||
// matrices A and M.
|
||||
ConstantCoefficient one(1.0);
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(pmesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
}
|
||||
|
||||
ParBilinearForm *a = new ParBilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
if (pmesh->bdr_attributes.Size() == 0)
|
||||
{
|
||||
// Add a mass term if the mesh has no boundary, e.g. periodic mesh or
|
||||
// closed surface.
|
||||
a->AddDomainIntegrator(new MassIntegrator(one));
|
||||
}
|
||||
a->Assemble();
|
||||
a->EliminateEssentialBCDiag(ess_bdr, 1.0);
|
||||
a->Finalize();
|
||||
|
||||
ParBilinearForm *m = new ParBilinearForm(fespace);
|
||||
m->AddDomainIntegrator(new MassIntegrator(one));
|
||||
m->Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m->Finalize();
|
||||
|
||||
PetscParMatrix *pA = NULL, *pM = NULL;
|
||||
HypreParMatrix *A = NULL, *M = NULL;
|
||||
Operator::Type tid =
|
||||
!use_slepc ? Operator::Hypre_ParCSR : Operator::PETSC_MATAIJ;
|
||||
OperatorHandle Ah(tid), Mh(tid);
|
||||
|
||||
a->ParallelAssemble(Ah);
|
||||
if (!use_slepc) { Ah.Get(A); }
|
||||
else { Ah.Get(pA); }
|
||||
Ah.SetOperatorOwner(false);
|
||||
|
||||
m->ParallelAssemble(Mh);
|
||||
if (!use_slepc) {Mh.Get(M); }
|
||||
else {Mh.Get(pM); }
|
||||
Mh.SetOperatorOwner(false);
|
||||
|
||||
#if defined(MFEM_USE_SUPERLU) || defined(MFEM_USE_STRUMPACK)
|
||||
Operator * Arow = NULL;
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
if (slu_solver)
|
||||
{
|
||||
Arow = new SuperLURowLocMatrix(*A);
|
||||
}
|
||||
#endif
|
||||
#ifdef MFEM_USE_STRUMPACK
|
||||
if (sp_solver)
|
||||
{
|
||||
Arow = new STRUMPACKRowLocMatrix(*A);
|
||||
}
|
||||
#endif
|
||||
#endif
|
||||
|
||||
delete a;
|
||||
delete m;
|
||||
|
||||
// 8. Define and configure the LOBPCG eigensolver and the BoomerAMG
|
||||
// preconditioner for A to be used within the solver. Set the matrices
|
||||
// which define the generalized eigenproblem A x = lambda M x.
|
||||
Solver * precond = NULL;
|
||||
if (!use_slepc)
|
||||
{
|
||||
if (!slu_solver && !sp_solver)
|
||||
{
|
||||
HypreBoomerAMG * amg = new HypreBoomerAMG(*A);
|
||||
amg->SetPrintLevel(0);
|
||||
precond = amg;
|
||||
}
|
||||
else
|
||||
{
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
if (slu_solver)
|
||||
{
|
||||
SuperLUSolver * superlu = new SuperLUSolver(MPI_COMM_WORLD);
|
||||
superlu->SetPrintStatistics(false);
|
||||
superlu->SetSymmetricPattern(true);
|
||||
superlu->SetColumnPermutation(superlu::PARMETIS);
|
||||
superlu->SetOperator(*Arow);
|
||||
precond = superlu;
|
||||
}
|
||||
#endif
|
||||
#ifdef MFEM_USE_STRUMPACK
|
||||
if (sp_solver)
|
||||
{
|
||||
STRUMPACKSolver * strumpack = new STRUMPACKSolver(argc, argv, MPI_COMM_WORLD);
|
||||
strumpack->SetPrintFactorStatistics(true);
|
||||
strumpack->SetPrintSolveStatistics(false);
|
||||
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
|
||||
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
|
||||
strumpack->DisableMatching();
|
||||
strumpack->SetOperator(*Arow);
|
||||
strumpack->SetFromCommandLine();
|
||||
precond = strumpack;
|
||||
}
|
||||
#endif
|
||||
}
|
||||
}
|
||||
|
||||
HypreLOBPCG * lobpcg = NULL;
|
||||
SlepcEigenSolver * slepc = NULL;
|
||||
if (!use_slepc)
|
||||
{
|
||||
|
||||
lobpcg = new HypreLOBPCG(MPI_COMM_WORLD);
|
||||
lobpcg->SetNumModes(nev);
|
||||
lobpcg->SetRandomSeed(seed);
|
||||
lobpcg->SetPreconditioner(*precond);
|
||||
lobpcg->SetMaxIter(200);
|
||||
lobpcg->SetTol(1e-8);
|
||||
lobpcg->SetPrecondUsageMode(1);
|
||||
lobpcg->SetPrintLevel(1);
|
||||
lobpcg->SetMassMatrix(*M);
|
||||
lobpcg->SetOperator(*A);
|
||||
}
|
||||
else
|
||||
{
|
||||
slepc = new SlepcEigenSolver(MPI_COMM_WORLD);
|
||||
slepc->SetNumModes(nev);
|
||||
slepc->SetWhichEigenpairs(SlepcEigenSolver::TARGET_REAL);
|
||||
slepc->SetTarget(0.0);
|
||||
slepc->SetSpectralTransformation(SlepcEigenSolver::SHIFT_INVERT);
|
||||
slepc->SetOperators(*pA,*pM);
|
||||
}
|
||||
|
||||
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define a
|
||||
// parallel grid function to represent each of the eigenmodes returned by
|
||||
// the solver.
|
||||
Array<double> eigenvalues;
|
||||
if (!use_slepc)
|
||||
{
|
||||
lobpcg->Solve();
|
||||
lobpcg->GetEigenvalues(eigenvalues);
|
||||
}
|
||||
else
|
||||
{
|
||||
slepc->Solve();
|
||||
eigenvalues.SetSize(nev);
|
||||
for (int i=0; i<nev; i++)
|
||||
{
|
||||
slepc->GetEigenvalue(i,eigenvalues[i]);
|
||||
}
|
||||
}
|
||||
Vector temp(fespace->GetTrueVSize());
|
||||
ParGridFunction x(fespace);
|
||||
|
||||
// 10. Save the refined mesh and the modes in parallel. This output can be
|
||||
// viewed later using GLVis: "glvis -np <np> -m mesh -g mode".
|
||||
{
|
||||
ostringstream mesh_name, mode_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh->Print(mesh_ofs);
|
||||
|
||||
for (int i=0; i<nev; i++)
|
||||
{
|
||||
// convert eigenvector from HypreParVector to ParGridFunction
|
||||
if (!use_slepc)
|
||||
{
|
||||
x = lobpcg->GetEigenvector(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
slepc->GetEigenvector(i,temp);
|
||||
x.Distribute(temp);
|
||||
|
||||
}
|
||||
|
||||
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
|
||||
<< setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mode_ofs(mode_name.str().c_str());
|
||||
mode_ofs.precision(8);
|
||||
x.Save(mode_ofs);
|
||||
mode_name.str("");
|
||||
}
|
||||
}
|
||||
|
||||
// 11. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream mode_sock(vishost, visport);
|
||||
mode_sock.precision(8);
|
||||
|
||||
for (int i=0; i<nev; i++)
|
||||
{
|
||||
if ( myid == 0 )
|
||||
{
|
||||
cout << "Eigenmode " << i+1 << '/' << nev
|
||||
<< ", Lambda = " << eigenvalues[i] << endl;
|
||||
}
|
||||
|
||||
// convert eigenvector from HypreParVector to ParGridFunction
|
||||
if (!use_slepc)
|
||||
{
|
||||
x = lobpcg->GetEigenvector(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
slepc->GetEigenvector(i,temp);
|
||||
x.Distribute(temp);
|
||||
}
|
||||
|
||||
mode_sock << "parallel " << num_procs << " " << myid << "\n"
|
||||
<< "solution\n" << *pmesh << x << flush
|
||||
<< "window_title 'Eigenmode " << i+1 << '/' << nev
|
||||
<< ", Lambda = " << eigenvalues[i] << "'" << endl;
|
||||
|
||||
char c;
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "press (q)uit or (c)ontinue --> " << flush;
|
||||
cin >> c;
|
||||
}
|
||||
MPI_Bcast(&c, 1, MPI_CHAR, 0, MPI_COMM_WORLD);
|
||||
|
||||
if (c != 'c')
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
mode_sock.close();
|
||||
}
|
||||
|
||||
// 12. Free the used memory.
|
||||
if (!use_slepc)
|
||||
{
|
||||
delete lobpcg;
|
||||
}
|
||||
else
|
||||
{
|
||||
delete slepc;
|
||||
}
|
||||
delete precond;
|
||||
delete M;
|
||||
delete A;
|
||||
#if defined(MFEM_USE_SUPERLU) || defined(MFEM_USE_STRUMPACK)
|
||||
delete Arow;
|
||||
#endif
|
||||
|
||||
delete fespace;
|
||||
if (order > 0)
|
||||
{
|
||||
delete fec;
|
||||
}
|
||||
delete pmesh;
|
||||
|
||||
// We finalize SLEPc
|
||||
MFEMFinalizeSlepc();
|
||||
MPI_Finalize();
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -23,9 +23,6 @@ MFEM_LIB_FILE = mfem_is_not_built
|
||||
|
||||
SEQ_EXAMPLES =
|
||||
PAR_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex9p ex10p
|
||||
ifeq ($(MFEM_USE_SLEPC),YES)
|
||||
PAR_EXAMPLES += ex11p
|
||||
endif
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
EXAMPLES = $(SEQ_EXAMPLES)
|
||||
else
|
||||
@@ -90,9 +87,6 @@ EX10_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p
|
||||
EX10_MF_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mf -tf 6 -s 3 -rs 0 -dt 3
|
||||
EX10_MFOP_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mfop -tf 6 -s 3 -rs 0 -dt 3
|
||||
EX10_JFNK_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_jfnk --jfnk -tf 6 -s 3 -rs 0 -dt 3
|
||||
EX11_ARGS_SINV := -m ../../data/star.mesh --useslepc
|
||||
EX11_ARGS_LOBPCG := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg
|
||||
EX11_ARGS_GD := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_gd
|
||||
|
||||
ex1p-test-par: ex1p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_W))
|
||||
@@ -120,12 +114,6 @@ ex10p-test-par: ex10p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_MF_ARGS))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_MFOP_ARGS))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_JFNK_ARGS))
|
||||
ifeq ($(MFEM_USE_SLEPC),YES)
|
||||
ex11p-test-par: ex11p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_SINV))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_LOBPCG))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_GD))
|
||||
endif
|
||||
|
||||
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
|
||||
|
||||
|
||||
@@ -1,6 +0,0 @@
|
||||
# Options for the eigenvalue solver
|
||||
-eps_view
|
||||
-eps_converged_reason
|
||||
-eps_type gd
|
||||
# Options for the spectral transform
|
||||
-st_type precond
|
||||
@@ -1,11 +0,0 @@
|
||||
# Options for the eigenvalue solver
|
||||
-eps_monitor
|
||||
-eps_converged_reason
|
||||
-eps_view_values
|
||||
-eps_type lobpcg
|
||||
-eps_gen_hermitian
|
||||
-eps_smallest_real
|
||||
-eps_lobpcg_blocksize 5
|
||||
# Options for the spectral transform
|
||||
-st_type precond
|
||||
-st_pc_type gamg
|
||||
+14
-16
@@ -76,7 +76,7 @@ BilinearForm::BilinearForm(FiniteElementSpace * f)
|
||||
precompute_sparsity = 0;
|
||||
diag_policy = DIAG_KEEP;
|
||||
|
||||
assembly = AssemblyLevel::LEGACYFULL;
|
||||
assembly = AssemblyLevel::FULL;
|
||||
batch = 1;
|
||||
ext = NULL;
|
||||
}
|
||||
@@ -94,7 +94,7 @@ BilinearForm::BilinearForm (FiniteElementSpace * f, BilinearForm * bf, int ps)
|
||||
precompute_sparsity = ps;
|
||||
diag_policy = DIAG_KEEP;
|
||||
|
||||
assembly = AssemblyLevel::LEGACYFULL;
|
||||
assembly = AssemblyLevel::FULL;
|
||||
batch = 1;
|
||||
ext = NULL;
|
||||
|
||||
@@ -121,10 +121,9 @@ void BilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
assembly = assembly_level;
|
||||
switch (assembly)
|
||||
{
|
||||
case AssemblyLevel::LEGACYFULL:
|
||||
break;
|
||||
case AssemblyLevel::FULL:
|
||||
ext = new FABilinearFormExtension(this);
|
||||
// ext = new FABilinearFormExtension(this);
|
||||
// Use the original BilinearForm implementation for now
|
||||
break;
|
||||
case AssemblyLevel::ELEMENT:
|
||||
ext = new EABilinearFormExtension(this);
|
||||
@@ -144,7 +143,7 @@ void BilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
void BilinearForm::EnableStaticCondensation()
|
||||
{
|
||||
delete static_cond;
|
||||
if (assembly != AssemblyLevel::LEGACYFULL)
|
||||
if (assembly != AssemblyLevel::FULL)
|
||||
{
|
||||
static_cond = NULL;
|
||||
MFEM_WARNING("Static condensation not supported for this assembly level");
|
||||
@@ -169,7 +168,7 @@ void BilinearForm::EnableHybridization(FiniteElementSpace *constr_space,
|
||||
const Array<int> &ess_tdof_list)
|
||||
{
|
||||
delete hybridization;
|
||||
if (assembly != AssemblyLevel::LEGACYFULL)
|
||||
if (assembly != AssemblyLevel::FULL)
|
||||
{
|
||||
delete constr_integ;
|
||||
hybridization = NULL;
|
||||
@@ -224,7 +223,7 @@ MatrixInverse * BilinearForm::Inverse() const
|
||||
|
||||
void BilinearForm::Finalize (int skip_zeros)
|
||||
{
|
||||
if (assembly == AssemblyLevel::LEGACYFULL)
|
||||
if (assembly == AssemblyLevel::FULL)
|
||||
{
|
||||
if (!static_cond) { mat->Finalize(skip_zeros); }
|
||||
if (mat_e) { mat_e->Finalize(skip_zeros); }
|
||||
@@ -640,7 +639,8 @@ void BilinearForm::AssembleDiagonal(Vector &diag) const
|
||||
}
|
||||
else
|
||||
{
|
||||
mat->GetDiag(diag);
|
||||
MFEM_ABORT("Not implemented. Maybe assemble your bilinear form into a "
|
||||
"matrix and use SparseMatrix::GetDiag?");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1083,7 +1083,7 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
|
||||
mat = NULL;
|
||||
mat_e = NULL;
|
||||
extern_bfs = 0;
|
||||
assembly = AssemblyLevel::LEGACYFULL;
|
||||
assembly = AssemblyLevel::FULL;
|
||||
ext = NULL;
|
||||
}
|
||||
|
||||
@@ -1108,7 +1108,7 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
|
||||
bbfi_marker = mbf->bbfi_marker;
|
||||
btfbfi_marker = mbf->btfbfi_marker;
|
||||
|
||||
assembly = AssemblyLevel::LEGACYFULL;
|
||||
assembly = AssemblyLevel::FULL;
|
||||
ext = NULL;
|
||||
}
|
||||
|
||||
@@ -1121,8 +1121,6 @@ void MixedBilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
assembly = assembly_level;
|
||||
switch (assembly)
|
||||
{
|
||||
case AssemblyLevel::LEGACYFULL:
|
||||
break;
|
||||
case AssemblyLevel::FULL:
|
||||
// ext = new FAMixedBilinearFormExtension(this);
|
||||
// Use the original BilinearForm implementation for now
|
||||
@@ -1193,7 +1191,7 @@ void MixedBilinearForm::AddMultTranspose(const Vector & x, Vector & y,
|
||||
|
||||
MatrixInverse * MixedBilinearForm::Inverse() const
|
||||
{
|
||||
if (assembly != AssemblyLevel::LEGACYFULL)
|
||||
if (assembly != AssemblyLevel::FULL)
|
||||
{
|
||||
MFEM_WARNING("MixedBilinearForm::Inverse not possible with this assembly level!");
|
||||
return NULL;
|
||||
@@ -1206,7 +1204,7 @@ MatrixInverse * MixedBilinearForm::Inverse() const
|
||||
|
||||
void MixedBilinearForm::Finalize (int skip_zeros)
|
||||
{
|
||||
if (assembly == AssemblyLevel::LEGACYFULL)
|
||||
if (assembly == AssemblyLevel::FULL)
|
||||
{
|
||||
mat -> Finalize (skip_zeros);
|
||||
}
|
||||
@@ -1483,7 +1481,7 @@ void MixedBilinearForm::AssembleDiagonal_ADAt(const Vector &D,
|
||||
|
||||
void MixedBilinearForm::ConformingAssemble()
|
||||
{
|
||||
if (assembly != AssemblyLevel::LEGACYFULL)
|
||||
if (assembly != AssemblyLevel::FULL)
|
||||
{
|
||||
MFEM_WARNING("Conforming assemble not supported for this assembly level!");
|
||||
return;
|
||||
|
||||
@@ -29,11 +29,8 @@ namespace mfem
|
||||
form classes derived from Operator. */
|
||||
enum class AssemblyLevel
|
||||
{
|
||||
/// Legacy fully assembled form, i.e. a global sparse matrix in MFEM, Hypre
|
||||
/// or PETSC format. This assembly is ALWAYS performed on the host.
|
||||
LEGACYFULL = 0,
|
||||
/// Fully assembled form, i.e. a global sparse matrix in MFEM format. This
|
||||
/// assembly is compatible with device execution.
|
||||
/// Fully assembled form, i.e. a global sparse matrix in MFEM, Hypre or PETSC
|
||||
/// format.
|
||||
FULL,
|
||||
/// Form assembled at element level, which computes and stores dense element
|
||||
/// matrices.
|
||||
@@ -122,7 +119,7 @@ protected:
|
||||
static_cond = NULL; hybridization = NULL;
|
||||
precompute_sparsity = 0;
|
||||
diag_policy = DIAG_KEEP;
|
||||
assembly = AssemblyLevel::LEGACYFULL;
|
||||
assembly = AssemblyLevel::FULL;
|
||||
batch = 1;
|
||||
ext = NULL;
|
||||
}
|
||||
|
||||
+35
-187
@@ -15,7 +15,6 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "libceed/ceed.hpp"
|
||||
#include "pgridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -293,8 +292,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
|
||||
// Data and methods for element-assembled bilinear forms
|
||||
EABilinearFormExtension::EABilinearFormExtension(BilinearForm *form)
|
||||
: PABilinearFormExtension(form),
|
||||
factorize_face_terms(form->FESpace()->IsDGSpace())
|
||||
: PABilinearFormExtension(form)
|
||||
{
|
||||
}
|
||||
|
||||
@@ -349,17 +347,6 @@ void EABilinearFormExtension::Assemble()
|
||||
{
|
||||
bdrFaceIntegrators[i]->AssembleEABoundaryFaces(*a->FESpace(),ea_data_bdr);
|
||||
}
|
||||
|
||||
if (factorize_face_terms && int_face_restrict_lex)
|
||||
{
|
||||
auto restFint = dynamic_cast<const L2FaceRestriction&>(*int_face_restrict_lex);
|
||||
restFint.AddFaceMatricesToElementMatrices(ea_data_int, ea_data);
|
||||
}
|
||||
if (factorize_face_terms && bdr_face_restrict_lex)
|
||||
{
|
||||
auto restFbdr = dynamic_cast<const L2FaceRestriction&>(*bdr_face_restrict_lex);
|
||||
restFbdr.AddFaceMatricesToElementMatrices(ea_data_bdr, ea_data);
|
||||
}
|
||||
}
|
||||
|
||||
void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
@@ -412,27 +399,24 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
const int NDOFS = faceDofs;
|
||||
auto X = Reshape(faceIntX.Read(), NDOFS, 2, nf_int);
|
||||
auto Y = Reshape(faceIntY.ReadWrite(), NDOFS, 2, nf_int);
|
||||
if (!factorize_face_terms)
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
double res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
double res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
}
|
||||
res += A_int(i, j, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
@@ -459,7 +443,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
// Treatment of boundary faces
|
||||
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
|
||||
const int bFISz = bdrFaceIntegrators.Size();
|
||||
if (!factorize_face_terms && bdr_face_restrict_lex && bFISz>0)
|
||||
if (bdr_face_restrict_lex && bFISz>0)
|
||||
{
|
||||
// Apply the Boundary Face Restriction
|
||||
bdr_face_restrict_lex->Mult(x, faceBdrX);
|
||||
@@ -538,27 +522,24 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
const int NDOFS = faceDofs;
|
||||
auto X = Reshape(faceIntX.Read(), NDOFS, 2, nf_int);
|
||||
auto Y = Reshape(faceIntY.ReadWrite(), NDOFS, 2, nf_int);
|
||||
if (!factorize_face_terms)
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
double res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
double res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
}
|
||||
res += A_int(j, i, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
@@ -585,7 +566,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
// Treatment of boundary faces
|
||||
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
|
||||
const int bFISz = bdrFaceIntegrators.Size();
|
||||
if (!factorize_face_terms && bdr_face_restrict_lex && bFISz>0)
|
||||
if (bdr_face_restrict_lex && bFISz>0)
|
||||
{
|
||||
// Apply the Boundary Face Restriction
|
||||
bdr_face_restrict_lex->Mult(x, faceBdrX);
|
||||
@@ -614,139 +595,6 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
// Data and methods for fully-assembled bilinear forms
|
||||
FABilinearFormExtension::FABilinearFormExtension(BilinearForm *form)
|
||||
: EABilinearFormExtension(form),
|
||||
mat(form->FESpace()->GetVSize(),form->FESpace()->GetVSize(),0),
|
||||
face_mat(form->FESpace()->GetVSize(),0,0),
|
||||
use_face_mat(false)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
if ( ParFiniteElementSpace* pfes =
|
||||
dynamic_cast<ParFiniteElementSpace*>(form->FESpace()) )
|
||||
{
|
||||
if (pfes->IsDGSpace())
|
||||
{
|
||||
use_face_mat = true;
|
||||
pfes->ExchangeFaceNbrData();
|
||||
face_mat.SetWidth(pfes->GetFaceNbrVSize());
|
||||
}
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::Assemble()
|
||||
{
|
||||
EABilinearFormExtension::Assemble();
|
||||
FiniteElementSpace &fes = *a->FESpace();
|
||||
if (fes.IsDGSpace())
|
||||
{
|
||||
const L2ElementRestriction *restE =
|
||||
static_cast<const L2ElementRestriction*>(elem_restrict);
|
||||
const L2FaceRestriction *restF =
|
||||
static_cast<const L2FaceRestriction*>(int_face_restrict_lex);
|
||||
// 1. Fill I
|
||||
// 1.1 Increment with restE
|
||||
restE->FillI(mat);
|
||||
// 1.2 Increment with restF
|
||||
if (restF) { restF->FillI(mat, face_mat); }
|
||||
// 1.3 Sum the non-zeros in I
|
||||
auto h_I = mat.HostReadWriteI();
|
||||
int cpt = 0;
|
||||
const int vd = fes.GetVDim();
|
||||
const int ndofs = ne*elemDofs*vd;
|
||||
for (int i = 0; i < ndofs; i++)
|
||||
{
|
||||
const int nnz = h_I[i];
|
||||
h_I[i] = cpt;
|
||||
cpt += nnz;
|
||||
}
|
||||
const int nnz = cpt;
|
||||
h_I[ndofs] = nnz;
|
||||
mat.GetMemoryJ().New(nnz, mat.GetMemoryJ().GetMemoryType());
|
||||
mat.GetMemoryData().New(nnz, mat.GetMemoryData().GetMemoryType());
|
||||
if (use_face_mat && restF)
|
||||
{
|
||||
auto h_I_face = face_mat.HostReadWriteI();
|
||||
int cpt = 0;
|
||||
for (int i = 0; i < ndofs; i++)
|
||||
{
|
||||
const int nnz = h_I_face[i];
|
||||
h_I_face[i] = cpt;
|
||||
cpt += nnz;
|
||||
}
|
||||
const int nnz_face = cpt;
|
||||
h_I_face[ndofs] = nnz_face;
|
||||
face_mat.GetMemoryJ().New(nnz_face,
|
||||
face_mat.GetMemoryJ().GetMemoryType());
|
||||
face_mat.GetMemoryData().New(nnz_face,
|
||||
face_mat.GetMemoryData().GetMemoryType());
|
||||
}
|
||||
// 2. Fill J and Data
|
||||
// 2.1 Fill J and Data with Elem ea_data
|
||||
restE->FillJAndData(ea_data, mat);
|
||||
// 2.2 Fill J and Data with Face ea_data_ext
|
||||
if (restF) { restF->FillJAndData(ea_data_ext, mat, face_mat); }
|
||||
// 2.3 Shift indirections in I back to original
|
||||
auto I = mat.HostReadWriteI();
|
||||
for (int i = ndofs; i > 0; i--)
|
||||
{
|
||||
I[i] = I[i-1];
|
||||
}
|
||||
I[0] = 0;
|
||||
if (use_face_mat && restF)
|
||||
{
|
||||
auto I_face = face_mat.HostReadWriteI();
|
||||
for (int i = ndofs; i > 0; i--)
|
||||
{
|
||||
I_face[i] = I_face[i-1];
|
||||
}
|
||||
I_face[0] = 0;
|
||||
}
|
||||
}
|
||||
else // continuous Galerkin case
|
||||
{
|
||||
const ElementRestriction &rest =
|
||||
static_cast<const ElementRestriction&>(*elem_restrict);
|
||||
rest.FillSparseMatrix(ea_data, mat);
|
||||
}
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
mat.Mult(x, y);
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (const ParFiniteElementSpace *pfes =
|
||||
dynamic_cast<const ParFiniteElementSpace*>(testFes))
|
||||
{
|
||||
ParGridFunction x_gf;
|
||||
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(pfes),
|
||||
const_cast<Vector&>(x),0);
|
||||
x_gf.ExchangeFaceNbrData();
|
||||
Vector &shared_x = x_gf.FaceNbrData();
|
||||
if (shared_x.Size()) { face_mat.AddMult(shared_x, y); }
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
mat.MultTranspose(x, y);
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (const ParFiniteElementSpace *pfes =
|
||||
dynamic_cast<const ParFiniteElementSpace*>(testFes))
|
||||
{
|
||||
ParGridFunction x_gf;
|
||||
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(pfes),
|
||||
const_cast<Vector&>(x),0);
|
||||
x_gf.ExchangeFaceNbrData();
|
||||
Vector &shared_x = x_gf.FaceNbrData();
|
||||
if (shared_x.Size()) { face_mat.AddMultTranspose(shared_x, y); }
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
|
||||
MixedBilinearFormExtension::MixedBilinearFormExtension(MixedBilinearForm *form)
|
||||
: Operator(form->Height(), form->Width()), a(form)
|
||||
{
|
||||
|
||||
+21
-19
@@ -62,6 +62,27 @@ public:
|
||||
virtual void Update() = 0;
|
||||
};
|
||||
|
||||
/** @brief Data and methods for fully-assembled bilinear forms.
|
||||
Not yet implemented! Use the BilinearForm Class instead. */
|
||||
class FABilinearFormExtension : public BilinearFormExtension
|
||||
{
|
||||
public:
|
||||
FABilinearFormExtension(BilinearForm *form)
|
||||
: BilinearFormExtension(form) { }
|
||||
|
||||
/// TODO
|
||||
void Assemble() {}
|
||||
void FormSystemMatrix(const Array<int> &ess_tdof_list, OperatorHandle &A) {}
|
||||
void FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior = 0) {}
|
||||
void Mult(const Vector &x, Vector &y) const {}
|
||||
void MultTranspose(const Vector &x, Vector &y) const {}
|
||||
void Update() {}
|
||||
~FABilinearFormExtension() {}
|
||||
};
|
||||
|
||||
/// Data and methods for partially-assembled bilinear forms
|
||||
class PABilinearFormExtension : public BilinearFormExtension
|
||||
{
|
||||
@@ -98,12 +119,10 @@ class EABilinearFormExtension : public PABilinearFormExtension
|
||||
protected:
|
||||
int ne;
|
||||
int elemDofs;
|
||||
// The element matrices are stored row major
|
||||
Vector ea_data;
|
||||
int nf_int, nf_bdr;
|
||||
int faceDofs;
|
||||
Vector ea_data_int, ea_data_ext, ea_data_bdr;
|
||||
bool factorize_face_terms;
|
||||
|
||||
public:
|
||||
EABilinearFormExtension(BilinearForm *form);
|
||||
@@ -113,23 +132,6 @@ public:
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
/// Data and methods for fully-assembled bilinear forms
|
||||
class FABilinearFormExtension : public EABilinearFormExtension
|
||||
{
|
||||
private:
|
||||
SparseMatrix mat;
|
||||
/// face_mat handles parallelism for DG face terms.
|
||||
SparseMatrix face_mat;
|
||||
bool use_face_mat;
|
||||
|
||||
public:
|
||||
FABilinearFormExtension(BilinearForm *form);
|
||||
|
||||
void Assemble();
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
/// Data and methods for matrix-free bilinear forms NOT YET IMPLEMENTED.
|
||||
class MFBilinearFormExtension : public BilinearFormExtension
|
||||
{
|
||||
|
||||
+23
-48
@@ -926,14 +926,11 @@ void BoundaryMassIntegrator::AssembleFaceMatrix(
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
|
||||
// Set the integration point in the face and the neighboring element
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring element's integration point
|
||||
const IntegrationPoint &eip = Trans.GetElement1IntPoint();
|
||||
IntegrationPoint eip;
|
||||
Trans.Loc1.Transform(ip, eip);
|
||||
el1.CalcShape(eip, shape);
|
||||
|
||||
Trans.SetIntPoint(&ip);
|
||||
w = Trans.Weight() * ip.weight;
|
||||
if (Q)
|
||||
{
|
||||
@@ -1522,7 +1519,6 @@ void CurlCurlIntegrator::AssembleElementMatrix
|
||||
double w;
|
||||
|
||||
#ifdef MFEM_THREAD_SAFE
|
||||
Vector D;
|
||||
DenseMatrix curlshape(nd,dimc), curlshape_dFt(nd,dimc), M;
|
||||
#else
|
||||
curlshape.SetSize(nd,dimc);
|
||||
@@ -1530,7 +1526,6 @@ void CurlCurlIntegrator::AssembleElementMatrix
|
||||
#endif
|
||||
elmat.SetSize(nd);
|
||||
if (MQ) { M.SetSize(dimc); }
|
||||
if (DQ) { D.SetSize(dimc); }
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
@@ -1574,12 +1569,6 @@ void CurlCurlIntegrator::AssembleElementMatrix
|
||||
Mult(curlshape_dFt, M, curlshape);
|
||||
AddMultABt(curlshape, curlshape_dFt, elmat);
|
||||
}
|
||||
else if (DQ)
|
||||
{
|
||||
DQ->Eval(D, Trans, ip);
|
||||
D *= w;
|
||||
AddMultADAt(curlshape_dFt, D, elmat);
|
||||
}
|
||||
else if (Q)
|
||||
{
|
||||
w *= Q->Eval(Trans, ip);
|
||||
@@ -2582,17 +2571,16 @@ void DGTraceIntegrator::AssembleFaceMatrix(const FiniteElement &el1,
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
|
||||
// Set the integration point in the face and the neighboring elements
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring elements' integration points
|
||||
// Note: eip2 will only contain valid data if Elem2 exists
|
||||
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
|
||||
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
|
||||
|
||||
IntegrationPoint eip1, eip2;
|
||||
Trans.Loc1.Transform(ip, eip1);
|
||||
if (ndof2)
|
||||
{
|
||||
Trans.Loc2.Transform(ip, eip2);
|
||||
}
|
||||
el1.CalcShape(eip1, shape1);
|
||||
|
||||
Trans.SetIntPoint(&ip);
|
||||
|
||||
u->Eval(vu, *Trans.Elem1, eip1);
|
||||
|
||||
if (dim == 1)
|
||||
@@ -2739,15 +2727,10 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
IntegrationPoint eip1, eip2;
|
||||
|
||||
// Set the integration point in the face and the neighboring elements
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring elements' integration points
|
||||
// Note: eip2 will only contain valid data if Elem2 exists
|
||||
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
|
||||
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
|
||||
|
||||
Trans.Loc1.Transform(ip, eip1);
|
||||
Trans.SetIntPoint(&ip);
|
||||
if (dim == 1)
|
||||
{
|
||||
nor(0) = 2*eip1.x - 1.0;
|
||||
@@ -2804,6 +2787,7 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
|
||||
|
||||
if (ndof2)
|
||||
{
|
||||
Trans.Loc2.Transform(ip, eip2);
|
||||
el2.CalcShape(eip2, shape2);
|
||||
el2.CalcDShape(eip2, dshape2);
|
||||
w = ip.weight/2/Trans.Elem2->Weight();
|
||||
@@ -3021,14 +3005,9 @@ void DGElasticityIntegrator::AssembleFaceMatrix(
|
||||
for (int pind = 0; pind < ir->GetNPoints(); ++pind)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(pind);
|
||||
|
||||
// Set the integration point in the face and the neighboring elements
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring elements' integration points
|
||||
// Note: eip2 will only contain valid data if Elem2 exists
|
||||
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
|
||||
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
|
||||
IntegrationPoint eip1, eip2; // integration point in the reference space
|
||||
Trans.Loc1.Transform(ip, eip1);
|
||||
Trans.SetIntPoint(&ip);
|
||||
|
||||
el1.CalcShape(eip1, shape1);
|
||||
el1.CalcDShape(eip1, dshape1);
|
||||
@@ -3048,6 +3027,7 @@ void DGElasticityIntegrator::AssembleFaceMatrix(
|
||||
double w, wLM;
|
||||
if (ndofs2)
|
||||
{
|
||||
Trans.Loc2.Transform(ip, eip2);
|
||||
el2.CalcShape(eip2, shape2);
|
||||
el2.CalcDShape(eip2, dshape2);
|
||||
CalcAdjugate(Trans.Elem2->Jacobian(), adjJ);
|
||||
@@ -3185,22 +3165,17 @@ void TraceJumpIntegrator::AssembleFaceMatrix(
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
|
||||
// Set the integration point in the face and the neighboring elements
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring elements' integration points
|
||||
// Note: eip2 will only contain valid data if Elem2 exists
|
||||
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
|
||||
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
|
||||
|
||||
IntegrationPoint eip1, eip2;
|
||||
// Trace finite element shape function
|
||||
Trans.SetIntPoint(&ip);
|
||||
trial_face_fe.CalcShape(ip, face_shape);
|
||||
// Side 1 finite element shape function
|
||||
Trans.Loc1.Transform(ip, eip1);
|
||||
test_fe1.CalcShape(eip1, shape1);
|
||||
if (ndof2)
|
||||
{
|
||||
// Side 2 finite element shape function
|
||||
Trans.Loc2.Transform(ip, eip2);
|
||||
test_fe2.CalcShape(eip2, shape2);
|
||||
}
|
||||
w = ip.weight;
|
||||
|
||||
+4
-53
@@ -20,13 +20,6 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Local maximum size of dofs and quads in 1D
|
||||
constexpr int HCURL_MAX_D1D = 5;
|
||||
constexpr int HCURL_MAX_Q1D = 6;
|
||||
|
||||
constexpr int HDIV_MAX_D1D = 5;
|
||||
constexpr int HDIV_MAX_Q1D = 6;
|
||||
|
||||
/// Abstract base class BilinearFormIntegrator
|
||||
class BilinearFormIntegrator : public NonlinearFormIntegrator
|
||||
{
|
||||
@@ -1692,22 +1685,6 @@ protected:
|
||||
{
|
||||
trial_fe.CalcPhysCurlShape(Trans, shape);
|
||||
}
|
||||
|
||||
using BilinearFormIntegrator::AssemblePA;
|
||||
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes);
|
||||
|
||||
virtual void AddMultPA(const Vector&, Vector&) const;
|
||||
|
||||
private:
|
||||
// PA extension
|
||||
Vector pa_data;
|
||||
const DofToQuad *mapsO; ///< Not owned. DOF-to-quad map, open.
|
||||
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
|
||||
const DofToQuad *mapsOtest; ///< Not owned. DOF-to-quad map, open.
|
||||
const DofToQuad *mapsCtest; ///< Not owned. DOF-to-quad map, closed.
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, dofs1D, dofs1Dtest,quad1D, testType, trialType, coeffDim;
|
||||
};
|
||||
|
||||
/** Class for integrating the bilinear form a(u,v) := (Q u, curl v) in 3D and
|
||||
@@ -1747,20 +1724,6 @@ protected:
|
||||
{
|
||||
test_fe.CalcPhysCurlShape(Trans, shape);
|
||||
}
|
||||
|
||||
using BilinearFormIntegrator::AssemblePA;
|
||||
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes);
|
||||
|
||||
virtual void AddMultPA(const Vector&, Vector&) const;
|
||||
|
||||
private:
|
||||
// PA extension
|
||||
Vector pa_data;
|
||||
const DofToQuad *mapsO; ///< Not owned. DOF-to-quad map, open.
|
||||
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, dofs1D, quad1D, testType, trialType, coeffDim;
|
||||
};
|
||||
|
||||
/** Class for integrating the bilinear form a(u,v) := - (Q u, grad v) in either
|
||||
@@ -2300,14 +2263,12 @@ class CurlCurlIntegrator: public BilinearFormIntegrator
|
||||
private:
|
||||
Vector vec, pointflux;
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector D;
|
||||
DenseMatrix curlshape, curlshape_dFt, M;
|
||||
DenseMatrix vshape, projcurl;
|
||||
#endif
|
||||
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
VectorCoefficient *DQ;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
// PA extension
|
||||
@@ -2316,17 +2277,12 @@ protected:
|
||||
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, nq, dofs1D, quad1D;
|
||||
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
|
||||
|
||||
public:
|
||||
CurlCurlIntegrator() { Q = NULL; DQ = NULL; MQ = NULL; }
|
||||
CurlCurlIntegrator() { Q = NULL; MQ = NULL; }
|
||||
/// Construct a bilinear form integrator for Nedelec elements
|
||||
CurlCurlIntegrator(Coefficient &q, const IntegrationRule *ir = NULL) :
|
||||
BilinearFormIntegrator(ir), Q(&q) { DQ = NULL; MQ = NULL; }
|
||||
CurlCurlIntegrator(VectorCoefficient &dq, const IntegrationRule *ir = NULL) :
|
||||
BilinearFormIntegrator(ir), DQ(&dq) { Q = NULL; MQ = NULL; }
|
||||
CurlCurlIntegrator(MatrixCoefficient &mq, const IntegrationRule *ir = NULL) :
|
||||
BilinearFormIntegrator(ir), MQ(&mq) { Q = NULL; DQ = NULL; }
|
||||
CurlCurlIntegrator(Coefficient &q) : Q(&q) { MQ = NULL; }
|
||||
CurlCurlIntegrator(MatrixCoefficient &m) : MQ(&m) { Q = NULL; }
|
||||
|
||||
/* Given a particular Finite Element, compute the
|
||||
element curl-curl matrix elmat */
|
||||
@@ -2404,11 +2360,8 @@ protected:
|
||||
Vector pa_data;
|
||||
const DofToQuad *mapsO; ///< Not owned. DOF-to-quad map, open.
|
||||
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
|
||||
const DofToQuad *mapsOtest; ///< Not owned. DOF-to-quad map, open.
|
||||
const DofToQuad *mapsCtest; ///< Not owned. DOF-to-quad map, closed.
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, nq, dofs1D, dofs1Dtest, quad1D, trial_fetype, test_fetype;
|
||||
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
|
||||
int dim, ne, nq, dofs1D, quad1D, fetype;
|
||||
|
||||
public:
|
||||
VectorFEMassIntegrator() { Init(NULL, NULL, NULL); }
|
||||
@@ -2429,8 +2382,6 @@ public:
|
||||
|
||||
using BilinearFormIntegrator::AssemblePA;
|
||||
virtual void AssemblePA(const FiniteElementSpace &fes);
|
||||
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes);
|
||||
virtual void AddMultPA(const Vector &x, Vector &y) const;
|
||||
virtual void AssembleDiagonalPA(Vector& diag);
|
||||
};
|
||||
|
||||
@@ -32,7 +32,7 @@ static void EAConvectionAssemble1D(const int NE,
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
|
||||
auto A = Reshape(eadata.Write(), D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -54,7 +54,7 @@ static void EAConvectionAssemble1D(const int NE,
|
||||
{
|
||||
val += r_Bj[k1] * D(k1, e) * r_Gi[k1];
|
||||
}
|
||||
A(i1, j1, e) += val;
|
||||
A(i1, j1, e) = val;
|
||||
}
|
||||
}
|
||||
});
|
||||
@@ -76,7 +76,7 @@ static void EAConvectionAssemble2D(const int NE,
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, 2, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
|
||||
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -121,7 +121,7 @@ static void EAConvectionAssemble2D(const int NE,
|
||||
* r_B[k1][j1]* r_B[k2][j2];
|
||||
}
|
||||
}
|
||||
A(i1, i2, j1, j2, e) += val;
|
||||
A(i1, i2, j1, j2, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -145,7 +145,7 @@ static void EAConvectionAssemble3D(const int NE,
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 3, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -191,7 +191,7 @@ static void EAConvectionAssemble3D(const int NE,
|
||||
}
|
||||
}
|
||||
}
|
||||
A(i1, i2, i3, j1, j2, j3, e) += val;
|
||||
A(i1, i2, i3, j1, j2, j3, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -788,20 +788,6 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
vel = cQ->GetVec();
|
||||
}
|
||||
else if (VectorQuadratureFunctionCoefficient* cQ =
|
||||
dynamic_cast<VectorQuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = cQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
|
||||
qFun.Read();
|
||||
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
vel.SetSize(dim * nq * ne);
|
||||
|
||||
@@ -167,19 +167,6 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
|
||||
r.SetSize(1);
|
||||
r(0) = c_rho->constant;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* c_rho =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(rho))
|
||||
{
|
||||
const QuadratureFunction &qFun = c_rho->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == nq * nf,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
r.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
r.SetSize(nq * nf);
|
||||
@@ -213,20 +200,6 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
|
||||
{
|
||||
vel = c_u->GetVec();
|
||||
}
|
||||
else if (VectorQuadratureFunctionCoefficient* c_u =
|
||||
dynamic_cast<VectorQuadratureFunctionCoefficient*>(u))
|
||||
{
|
||||
// Assumed to be in lexicographical ordering
|
||||
const QuadratureFunction &qFun = c_u->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == dim * nq * nf,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
vel.SetSize(dim * nq * nf);
|
||||
|
||||
@@ -31,7 +31,7 @@ static void EADiffusionAssemble1D(const int NE,
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
|
||||
auto A = Reshape(eadata.Write(), D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -53,7 +53,7 @@ static void EADiffusionAssemble1D(const int NE,
|
||||
{
|
||||
val += r_Gj[k1] * D(k1, e) * r_Gi[k1];
|
||||
}
|
||||
A(i1, j1, e) += val;
|
||||
A(i1, j1, e) = val;
|
||||
}
|
||||
}
|
||||
});
|
||||
@@ -75,7 +75,7 @@ static void EADiffusionAssemble2D(const int NE,
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, 3, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
|
||||
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -120,7 +120,7 @@ static void EADiffusionAssemble2D(const int NE,
|
||||
+ gbi * D11 * gbj;
|
||||
}
|
||||
}
|
||||
A(i1, i2, j1, j2, e) += val;
|
||||
A(i1, i2, j1, j2, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -144,7 +144,7 @@ static void EADiffusionAssemble3D(const int NE,
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 6, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -208,7 +208,7 @@ static void EADiffusionAssemble3D(const int NE,
|
||||
}
|
||||
}
|
||||
}
|
||||
A(i1, i2, i3, j1, j2, j3, e) += val;
|
||||
A(i1, i2, i3, j1, j2, j3, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+178
-273
@@ -176,42 +176,41 @@ static void PADiffusionSetup3D(const int Q1D,
|
||||
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
|
||||
auto C = const_c ? Reshape(c.Read(), 1, 1) : Reshape(c.Read(), NQ, NE);
|
||||
auto D = Reshape(d.Write(), NQ, 6, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
MFEM_FORALL(eq, NE*NQ,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
const double J11 = J(q,0,0,e);
|
||||
const double J21 = J(q,1,0,e);
|
||||
const double J31 = J(q,2,0,e);
|
||||
const double J12 = J(q,0,1,e);
|
||||
const double J22 = J(q,1,1,e);
|
||||
const double J32 = J(q,2,1,e);
|
||||
const double J13 = J(q,0,2,e);
|
||||
const double J23 = J(q,1,2,e);
|
||||
const double J33 = J(q,2,2,e);
|
||||
const double detJ = J11 * (J22 * J33 - J32 * J23) -
|
||||
/* */ J21 * (J12 * J33 - J32 * J13) +
|
||||
/* */ J31 * (J12 * J23 - J22 * J13);
|
||||
const double coeff = const_c ? C(0,0) : C(q,e);
|
||||
const double c_detJ = W[q] * coeff / detJ;
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J32 * J13) - (J12 * J33);
|
||||
const double A13 = (J12 * J23) - (J22 * J13);
|
||||
const double A21 = (J31 * J23) - (J21 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J21 * J13) - (J11 * J23);
|
||||
const double A31 = (J21 * J32) - (J31 * J22);
|
||||
const double A32 = (J31 * J12) - (J11 * J32);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
// detJ J^{-1} J^{-T} = (1/detJ) adj(J) adj(J)^T
|
||||
D(q,0,e) = c_detJ * (A11*A11 + A12*A12 + A13*A13); // 1,1
|
||||
D(q,1,e) = c_detJ * (A11*A21 + A12*A22 + A13*A23); // 2,1
|
||||
D(q,2,e) = c_detJ * (A11*A31 + A12*A32 + A13*A33); // 3,1
|
||||
D(q,3,e) = c_detJ * (A21*A21 + A22*A22 + A23*A23); // 2,2
|
||||
D(q,4,e) = c_detJ * (A21*A31 + A22*A32 + A23*A33); // 3,2
|
||||
D(q,5,e) = c_detJ * (A31*A31 + A32*A32 + A33*A33); // 3,3
|
||||
}
|
||||
const int e = eq / NQ;
|
||||
const int q = eq % NQ;
|
||||
const double J11 = J(q,0,0,e);
|
||||
const double J21 = J(q,1,0,e);
|
||||
const double J31 = J(q,2,0,e);
|
||||
const double J12 = J(q,0,1,e);
|
||||
const double J22 = J(q,1,1,e);
|
||||
const double J32 = J(q,2,1,e);
|
||||
const double J13 = J(q,0,2,e);
|
||||
const double J23 = J(q,1,2,e);
|
||||
const double J33 = J(q,2,2,e);
|
||||
const double detJ = J11 * (J22 * J33 - J32 * J23) -
|
||||
/* */ J21 * (J12 * J33 - J32 * J13) +
|
||||
/* */ J31 * (J12 * J23 - J22 * J13);
|
||||
const double coeff = const_c ? C(0,0) : C(q,e);
|
||||
const double c_detJ = W[q] * coeff / detJ;
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J32 * J13) - (J12 * J33);
|
||||
const double A13 = (J12 * J23) - (J22 * J13);
|
||||
const double A21 = (J31 * J23) - (J21 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J21 * J13) - (J11 * J23);
|
||||
const double A31 = (J21 * J32) - (J31 * J22);
|
||||
const double A32 = (J31 * J12) - (J11 * J32);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
// detJ J^{-1} J^{-T} = (1/detJ) adj(J) adj(J)^T
|
||||
D(q,0,e) = c_detJ * (A11*A11 + A12*A12 + A13*A13); // 1,1
|
||||
D(q,1,e) = c_detJ * (A11*A21 + A12*A22 + A13*A23); // 2,1
|
||||
D(q,2,e) = c_detJ * (A11*A31 + A12*A32 + A13*A33); // 3,1
|
||||
D(q,3,e) = c_detJ * (A21*A21 + A22*A22 + A23*A23); // 2,2
|
||||
D(q,4,e) = c_detJ * (A21*A31 + A22*A32 + A23*A33); // 3,2
|
||||
D(q,5,e) = c_detJ * (A31*A31 + A32*A32 + A33*A33); // 3,3
|
||||
});
|
||||
}
|
||||
|
||||
@@ -296,19 +295,6 @@ void DiffusionIntegrator::SetupPA(const FiniteElementSpace &fes,
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = cQ->constant;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* cQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = cQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == ne*nq,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
coeff.SetSize(nq * ne);
|
||||
@@ -1320,33 +1306,7 @@ static void PADiffusionApply3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
// Half of B and G are stored in shared to get B, Bt, G and Gt.
|
||||
// Indices computation for SmemPADiffusionApply3D.
|
||||
static MFEM_HOST_DEVICE inline int qi(const int q, const int d, const int Q)
|
||||
{
|
||||
return (q<=d) ? q : Q-1-q;
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline int dj(const int q, const int d, const int D)
|
||||
{
|
||||
return (q<=d) ? d : D-1-d;
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline int qk(const int q, const int d, const int Q)
|
||||
{
|
||||
return (q<=d) ? Q-1-q : q;
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline int dl(const int q, const int d, const int D)
|
||||
{
|
||||
return (q<=d) ? D-1-d : d;
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline double sign(const int q, const int d)
|
||||
{
|
||||
return (q<=d) ? -1.0 : 1.0;
|
||||
}
|
||||
|
||||
// Shared memory PA Diffusion Apply 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void SmemPADiffusionApply3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
@@ -1359,27 +1319,28 @@ static void SmemPADiffusionApply3D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int M1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= M1D, "");
|
||||
MFEM_VERIFY(Q1D <= M1Q, "");
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= MD1, "");
|
||||
MFEM_VERIFY(Q1D <= MQ1, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto g = Reshape(g_.Read(), Q1D, D1D);
|
||||
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, 6, NE);
|
||||
auto d = Reshape(d_.Read(), Q1D*Q1D*Q1D, 6, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
MFEM_SHARED double sBG[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) sBG;
|
||||
double (*G)[MD1] = (double (*)[MD1]) sBG;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) sBG;
|
||||
double (*Gt)[MQ1] = (double (*)[MQ1]) sBG;
|
||||
constexpr int MDQ = MQ1 > MD1 ? MQ1 : MD1;
|
||||
MFEM_SHARED double sBG[2][MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) (sBG+0);
|
||||
double (*G)[MD1] = (double (*)[MD1]) (sBG+1);
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) (sBG+0);
|
||||
double (*Gt)[MQ1] = (double (*)[MQ1]) (sBG+1);
|
||||
MFEM_SHARED double sm0[3][MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[3][MDQ*MDQ*MDQ];
|
||||
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+2);
|
||||
@@ -1397,127 +1358,108 @@ static void SmemPADiffusionApply3D(const int NE,
|
||||
double (*QDD0)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+0);
|
||||
double (*QDD1)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+1);
|
||||
double (*QDD2)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+2);
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
}
|
||||
}
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
const int i = qi(qx,dy,Q1D);
|
||||
const int j = dj(qx,dy,D1D);
|
||||
const int k = qk(qx,dy,Q1D);
|
||||
const int l = dl(qx,dy,D1D);
|
||||
B[i][j] = b(qx,dy);
|
||||
G[k][l] = g(qx,dy) * sign(qx,dy);
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
G[q][d] = g(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
double u[D1D], v[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++) { u[dz] = v[dz] = 0.0; }
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
const int i = qi(qx,dx,Q1D);
|
||||
const int j = dj(qx,dx,D1D);
|
||||
const int k = qk(qx,dx,Q1D);
|
||||
const int l = dl(qx,dx,D1D);
|
||||
const double s = sign(qx,dx);
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
double u = 0.0;
|
||||
double v = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double coords = X[dz][dy][dx];
|
||||
u[dz] += coords * B[i][j];
|
||||
v[dz] += coords * G[k][l] * s;
|
||||
u += coords * B[qx][dx];
|
||||
v += coords * G[qx][dx];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
DDQ0[dz][dy][qx] = u[dz];
|
||||
DDQ1[dz][dy][qx] = v[dz];
|
||||
DDQ0[dz][dy][qx] = u;
|
||||
DDQ1[dz][dy][qx] = v;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
double u[D1D], v[D1D], w[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++) { u[dz] = v[dz] = w[dz] = 0.0; }
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
const int i = qi(qy,dy,Q1D);
|
||||
const int j = dj(qy,dy,D1D);
|
||||
const int k = qk(qy,dy,Q1D);
|
||||
const int l = dl(qy,dy,D1D);
|
||||
const double s = sign(qy,dy);
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
double u = 0.0;
|
||||
double v = 0.0;
|
||||
double w = 0.0;
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
u[dz] += DDQ1[dz][dy][qx] * B[i][j];
|
||||
v[dz] += DDQ0[dz][dy][qx] * G[k][l] * s;
|
||||
w[dz] += DDQ0[dz][dy][qx] * B[i][j];
|
||||
u += DDQ1[dz][dy][qx] * B[qy][dy];
|
||||
v += DDQ0[dz][dy][qx] * G[qy][dy];
|
||||
w += DDQ0[dz][dy][qx] * B[qy][dy];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
DQQ0[dz][qy][qx] = u[dz];
|
||||
DQQ1[dz][qy][qx] = v[dz];
|
||||
DQQ2[dz][qy][qx] = w[dz];
|
||||
DQQ0[dz][qy][qx] = u;
|
||||
DQQ1[dz][qy][qx] = v;
|
||||
DQQ2[dz][qy][qx] = w;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
double u[Q1D], v[Q1D], w[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++) { u[qz] = v[qz] = w[qz] = 0.0; }
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
double u = 0.0;
|
||||
double v = 0.0;
|
||||
double w = 0.0;
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
const int i = qi(qz,dz,Q1D);
|
||||
const int j = dj(qz,dz,D1D);
|
||||
const int k = qk(qz,dz,Q1D);
|
||||
const int l = dl(qz,dz,D1D);
|
||||
const double s = sign(qz,dz);
|
||||
u[qz] += DQQ0[dz][qy][qx] * B[i][j];
|
||||
v[qz] += DQQ1[dz][qy][qx] * B[i][j];
|
||||
w[qz] += DQQ2[dz][qy][qx] * G[k][l] * s;
|
||||
u += DQQ0[dz][qy][qx] * B[qz][dz];
|
||||
v += DQQ1[dz][qy][qx] * B[qz][dz];
|
||||
w += DQQ2[dz][qy][qx] * G[qz][dz];
|
||||
}
|
||||
QQQ0[qz][qy][qx] = u;
|
||||
QQQ1[qz][qy][qx] = v;
|
||||
QQQ2[qz][qy][qx] = w;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
const double O11 = d(qx,qy,qz,0,e);
|
||||
const double O12 = d(qx,qy,qz,1,e);
|
||||
const double O13 = d(qx,qy,qz,2,e);
|
||||
const double O22 = d(qx,qy,qz,3,e);
|
||||
const double O23 = d(qx,qy,qz,4,e);
|
||||
const double O33 = d(qx,qy,qz,5,e);
|
||||
const double gX = u[qz];
|
||||
const double gY = v[qz];
|
||||
const double gZ = w[qz];
|
||||
const int q = qx + ((qy*Q1D) + (qz*Q1D*Q1D));
|
||||
const double O11 = d(q,0,e);
|
||||
const double O12 = d(q,1,e);
|
||||
const double O13 = d(q,2,e);
|
||||
const double O22 = d(q,3,e);
|
||||
const double O23 = d(q,4,e);
|
||||
const double O33 = d(q,5,e);
|
||||
const double gX = QQQ0[qz][qy][qx];
|
||||
const double gY = QQQ1[qz][qy][qx];
|
||||
const double gZ = QQQ2[qz][qy][qx];
|
||||
QQQ0[qz][qy][qx] = (O11*gX) + (O12*gY) + (O13*gZ);
|
||||
QQQ1[qz][qy][qx] = (O12*gX) + (O22*gY) + (O23*gZ);
|
||||
QQQ2[qz][qy][qx] = (O13*gX) + (O23*gY) + (O33*gZ);
|
||||
@@ -1525,112 +1467,78 @@ static void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
const int i = qi(q,d,Q1D);
|
||||
const int j = dj(q,d,D1D);
|
||||
const int k = qk(q,d,Q1D);
|
||||
const int l = dl(q,d,D1D);
|
||||
Bt[j][i] = b(q,d);
|
||||
Gt[l][k] = g(q,d) * sign(q,d);
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[d][q] = b(q,d);
|
||||
Gt[d][q] = g(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
double u[Q1D], v[Q1D], w[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = v[qz] = w[qz] = 0.0; }
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
const int i = qi(qx,dx,Q1D);
|
||||
const int j = dj(qx,dx,D1D);
|
||||
const int k = qk(qx,dx,Q1D);
|
||||
const int l = dl(qx,dx,D1D);
|
||||
const double s = sign(qx,dx);
|
||||
MFEM_UNROLL(MQ1)
|
||||
double u = 0.0;
|
||||
double v = 0.0;
|
||||
double w = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += QQQ0[qz][qy][qx] * Gt[dx][qx];
|
||||
v += QQQ1[qz][qy][qx] * Bt[dx][qx];
|
||||
w += QQQ2[qz][qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
QQD0[qz][qy][dx] = u;
|
||||
QQD1[qz][qy][dx] = v;
|
||||
QQD2[qz][qy][dx] = w;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
double v = 0.0;
|
||||
double w = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += QQD0[qz][qy][dx] * Bt[dy][qy];
|
||||
v += QQD1[qz][qy][dx] * Gt[dy][qy];
|
||||
w += QQD2[qz][qy][dx] * Bt[dy][qy];
|
||||
}
|
||||
QDD0[qz][dy][dx] = u;
|
||||
QDD1[qz][dy][dx] = v;
|
||||
QDD2[qz][dy][dx] = w;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
double v = 0.0;
|
||||
double w = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQQ0[qz][qy][qx] * Gt[l][k] * s;
|
||||
v[qz] += QQQ1[qz][qy][qx] * Bt[j][i];
|
||||
w[qz] += QQQ2[qz][qy][qx] * Bt[j][i];
|
||||
u += QDD0[qz][dy][dx] * Bt[dz][qz];
|
||||
v += QDD1[qz][dy][dx] * Bt[dz][qz];
|
||||
w += QDD2[qz][dy][dx] * Gt[dz][qz];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD0[qz][qy][dx] = u[qz];
|
||||
QQD1[qz][qy][dx] = v[qz];
|
||||
QQD2[qz][qy][dx] = w[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[Q1D], v[Q1D], w[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = v[qz] = w[qz] = 0.0; }
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const int i = qi(qy,dy,Q1D);
|
||||
const int j = dj(qy,dy,D1D);
|
||||
const int k = qk(qy,dy,Q1D);
|
||||
const int l = dl(qy,dy,D1D);
|
||||
const double s = sign(qy,dy);
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQD0[qz][qy][dx] * Bt[j][i];
|
||||
v[qz] += QQD1[qz][qy][dx] * Gt[l][k] * s;
|
||||
w[qz] += QQD2[qz][qy][dx] * Bt[j][i];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QDD0[qz][dy][dx] = u[qz];
|
||||
QDD1[qz][dy][dx] = v[qz];
|
||||
QDD2[qz][dy][dx] = w[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[D1D], v[D1D], w[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz) { u[dz] = v[dz] = w[dz] = 0.0; }
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
const int i = qi(qz,dz,Q1D);
|
||||
const int j = dj(qz,dz,D1D);
|
||||
const int k = qk(qz,dz,Q1D);
|
||||
const int l = dl(qz,dz,D1D);
|
||||
const double s = sign(qz,dz);
|
||||
u[dz] += QDD0[qz][dy][dx] * Bt[j][i];
|
||||
v[dz] += QDD1[qz][dy][dx] * Bt[j][i];
|
||||
w[dz] += QDD2[qz][dy][dx] * Gt[l][k] * s;
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
y(dx,dy,dz,e) += (u[dz] + v[dz] + w[dz]);
|
||||
y(dx,dy,dz,e) += (u + v + w);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1665,11 +1573,9 @@ static void PADiffusionApply(const int dim,
|
||||
MFEM_ABORT("OCCA PADiffusionApply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
const int ID = (D1D << 4 ) | Q1D;
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (ID)
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPADiffusionApply2D<2,2,16>(NE,B,G,D,X,Y);
|
||||
case 0x33: return SmemPADiffusionApply2D<3,3,16>(NE,B,G,D,X,Y);
|
||||
@@ -1682,10 +1588,9 @@ static void PADiffusionApply(const int dim,
|
||||
default: return PADiffusionApply2D(NE,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
|
||||
if (dim == 3)
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (ID)
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x23: return SmemPADiffusionApply3D<2,3>(NE,B,G,D,X,Y);
|
||||
case 0x34: return SmemPADiffusionApply3D<3,4>(NE,B,G,D,X,Y);
|
||||
|
||||
+75
-1583
File diff suppressed because it is too large
Load Diff
+6
-11
@@ -23,6 +23,11 @@ using namespace std;
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Local maximum size of dofs and quads in 1D
|
||||
constexpr int HDIV_MAX_D1D = 5;
|
||||
constexpr int HDIV_MAX_Q1D = 6;
|
||||
|
||||
|
||||
// PA H(div) Mass Assemble 2D kernel
|
||||
void PAHdivSetup2D(const int Q1D,
|
||||
const int NE,
|
||||
@@ -109,8 +114,6 @@ void PAHdivMassApply2D(const int D1D,
|
||||
Vector &_y)
|
||||
{
|
||||
constexpr static int VDIM = 2;
|
||||
constexpr static int MAX_D1D = HDIV_MAX_D1D;
|
||||
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Bc = Reshape(_Bc.Read(), Q1D, D1D);
|
||||
@@ -235,7 +238,6 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
Vector &_diag)
|
||||
{
|
||||
constexpr static int VDIM = 2;
|
||||
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Bc = Reshape(_Bc.Read(), Q1D, D1D);
|
||||
@@ -612,8 +614,6 @@ static void PADivDivApply2D(const int D1D,
|
||||
Vector &_y)
|
||||
{
|
||||
constexpr static int VDIM = 2;
|
||||
constexpr static int MAX_D1D = HDIV_MAX_D1D;
|
||||
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Bot = Reshape(_Bot.Read(), D1D-1, Q1D);
|
||||
@@ -977,7 +977,6 @@ static void PADivDivAssembleDiagonal2D(const int D1D,
|
||||
Vector &_diag)
|
||||
{
|
||||
constexpr static int VDIM = 2;
|
||||
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Gc = Reshape(_Gc.Read(), Q1D, D1D);
|
||||
@@ -1401,8 +1400,6 @@ static void PAHdivL2Apply2D(const int D1D,
|
||||
Vector &_y)
|
||||
{
|
||||
constexpr static int VDIM = 2;
|
||||
constexpr static int MAX_D1D = HDIV_MAX_D1D;
|
||||
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Gc = Reshape(_Gc.Read(), Q1D, D1D);
|
||||
@@ -1669,8 +1666,6 @@ static void PAHdivL2ApplyTranspose2D(const int D1D,
|
||||
Vector &_y)
|
||||
{
|
||||
constexpr static int VDIM = 2;
|
||||
constexpr static int MAX_D1D = HDIV_MAX_D1D;
|
||||
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
|
||||
|
||||
auto L2Bo = Reshape(_L2Bo.Read(), Q1D, L2D1D);
|
||||
auto Gct = Reshape(_Gct.Read(), D1D, Q1D);
|
||||
@@ -1729,7 +1724,7 @@ static void PAHdivL2ApplyTranspose2D(const int D1D,
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double aX[MAX_D1D];
|
||||
double aX[HDIV_MAX_D1D];
|
||||
|
||||
int osc = 0;
|
||||
for (int c = 0; c < VDIM; ++c) // loop over x, y components
|
||||
|
||||
@@ -30,7 +30,7 @@ static void EAMassAssemble1D(const int NE,
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, NE);
|
||||
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
|
||||
auto M = Reshape(eadata.Write(), D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -52,7 +52,7 @@ static void EAMassAssemble1D(const int NE,
|
||||
{
|
||||
val += r_Bi[k1] * r_Bj[k1] * D(k1, e);
|
||||
}
|
||||
M(i1, j1, e) += val;
|
||||
M(i1, j1, e) = val;
|
||||
}
|
||||
}
|
||||
});
|
||||
@@ -72,7 +72,7 @@ static void EAMassAssemble2D(const int NE,
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, NE);
|
||||
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
|
||||
auto M = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -114,7 +114,7 @@ static void EAMassAssemble2D(const int NE,
|
||||
* s_D[k1][k2];
|
||||
}
|
||||
}
|
||||
M(i1, i2, j1, j2, e) += val;
|
||||
M(i1, i2, j1, j2, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -136,7 +136,7 @@ static void EAMassAssemble3D(const int NE,
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
auto M = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -189,7 +189,7 @@ static void EAMassAssemble3D(const int NE,
|
||||
}
|
||||
}
|
||||
}
|
||||
M(i1, i2, i3, j1, j2, j3, e) += val;
|
||||
M(i1, i2, i3, j1, j2, j3, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+21
-26
@@ -25,6 +25,7 @@ namespace mfem
|
||||
|
||||
void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
|
||||
{
|
||||
|
||||
// Assuming the same element type
|
||||
fespace = &fes;
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
@@ -41,8 +42,6 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
|
||||
InitCeedCoeff(Q, ptr);
|
||||
return CeedPAMassAssemble(fes, *ir, *ptr);
|
||||
}
|
||||
#else
|
||||
MFEM_CONTRACT_VAR(force);
|
||||
#endif
|
||||
dim = mesh->Dimension();
|
||||
ne = fes.GetMesh()->GetNE();
|
||||
@@ -53,34 +52,30 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(ne*nq, Device::GetDeviceMemoryType());
|
||||
Vector coeff;
|
||||
Vector *coeff{nullptr};
|
||||
bool own_coeff{true};
|
||||
if (Q == nullptr)
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = 1.0;
|
||||
coeff = new Vector;
|
||||
coeff->SetSize(1);
|
||||
(*coeff)(0) = 1.0;
|
||||
}
|
||||
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = cQ->constant;
|
||||
coeff = new Vector;
|
||||
coeff->SetSize(1);
|
||||
(*coeff)(0) = 1.0;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* cQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
else if (QuadratureCoefficient* cQ = dynamic_cast<QuadratureCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = cQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
coeff = cQ->Data();
|
||||
own_coeff = false;
|
||||
}
|
||||
else
|
||||
{
|
||||
coeff.SetSize(nq * ne);
|
||||
auto C = Reshape(coeff.HostWrite(), nq, ne);
|
||||
coeff = new Vector;
|
||||
coeff->SetSize(nq * ne);
|
||||
auto C = Reshape(coeff->HostWrite(), nq, ne);
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
ElementTransformation& T = *fes.GetElementTransformation(e);
|
||||
@@ -95,11 +90,11 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
|
||||
{
|
||||
const int NE = ne;
|
||||
const int NQ = nq;
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool const_c = coeff->Size() == 1;
|
||||
auto w = ir->GetWeights().Read();
|
||||
auto J = Reshape(geom->J.Read(), NQ,2,2,NE);
|
||||
auto C =
|
||||
const_c ? Reshape(coeff.Read(), 1,1) : Reshape(coeff.Read(), NQ,NE);
|
||||
const_c ? Reshape(coeff->Read(), 1,1) : Reshape(coeff->Read(), NQ,NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
@@ -119,11 +114,11 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
|
||||
{
|
||||
const int NE = ne;
|
||||
const int NQ = nq;
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool const_c = coeff->Size() == 1;
|
||||
auto W = ir->GetWeights().Read();
|
||||
auto J = Reshape(geom->J.Read(), NQ,3,3,NE);
|
||||
auto C =
|
||||
const_c ? Reshape(coeff.Read(), 1,1) : Reshape(coeff.Read(), NQ,NE);
|
||||
const_c ? Reshape(coeff->Read(), 1,1) : Reshape(coeff->Read(), NQ,NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ,NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
@@ -140,6 +135,8 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
if (own_coeff) { delete coeff; }
|
||||
}
|
||||
|
||||
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
@@ -654,7 +651,6 @@ static void SmemPAMassApply2D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
@@ -918,7 +914,6 @@ static void SmemPAMassApply3D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
@@ -25,7 +25,7 @@ void TransposeIntegrator::AssembleEA(const FiniteElementSpace &fes,
|
||||
if (ne == 0) { return; }
|
||||
const int dofs = fes.GetFE(0)->GetDof();
|
||||
auto A = Reshape(ea_data_tmp.Write(), dofs, dofs, ne);
|
||||
auto AT = Reshape(ea_data.ReadWrite(), dofs, dofs, ne);
|
||||
auto AT = Reshape(ea_data.Write(), dofs, dofs, ne);
|
||||
MFEM_FORALL(e, ne,
|
||||
{
|
||||
for (int i = 0; i < dofs; i++)
|
||||
|
||||
+38
-736
@@ -9,14 +9,12 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
void PAHcurlSetup2D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
@@ -24,7 +22,6 @@ void PAHcurlSetup2D(const int Q1D,
|
||||
Vector &op);
|
||||
|
||||
void PAHcurlSetup3D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
@@ -34,7 +31,6 @@ void PAHcurlSetup3D(const int Q1D,
|
||||
void PAHcurlMassAssembleDiagonal2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &_Bo,
|
||||
const Array<double> &_Bc,
|
||||
const Vector &_op,
|
||||
@@ -43,7 +39,6 @@ void PAHcurlMassAssembleDiagonal2D(const int D1D,
|
||||
void PAHcurlMassAssembleDiagonal3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &_Bo,
|
||||
const Array<double> &_Bc,
|
||||
const Vector &_op,
|
||||
@@ -52,7 +47,6 @@ void PAHcurlMassAssembleDiagonal3D(const int D1D,
|
||||
void PAHcurlMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &_Bo,
|
||||
const Array<double> &_Bc,
|
||||
const Array<double> &_Bot,
|
||||
@@ -64,7 +58,6 @@ void PAHcurlMassApply2D(const int D1D,
|
||||
void PAHcurlMassApply3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &_Bo,
|
||||
const Array<double> &_Bc,
|
||||
const Array<double> &_Bot,
|
||||
@@ -147,573 +140,20 @@ void PAHdivMassApply3D(const int D1D,
|
||||
const Vector &_x,
|
||||
Vector &_y);
|
||||
|
||||
void PAHcurlL2Setup(const int NQ,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
Vector &_coeff,
|
||||
Vector &op);
|
||||
|
||||
// PA H(curl) x H(div) mass assemble 3D kernel, with factor
|
||||
// dF^{-1} C dF for a vector or matrix coefficient C.
|
||||
// If transpose, use dF^T C dF^{-T} for H(div) x H(curl).
|
||||
void PAHcurlHdivSetup3D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const bool transpose,
|
||||
const Array<double> &_w,
|
||||
const Vector &j,
|
||||
Vector &_coeff,
|
||||
Vector &op)
|
||||
{
|
||||
const int NQ = Q1D*Q1D*Q1D;
|
||||
const bool symmetric = (coeffDim != 9);
|
||||
auto W = _w.Read();
|
||||
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
|
||||
auto coeff = Reshape(_coeff.Read(), coeffDim, NQ, NE);
|
||||
auto y = Reshape(op.Write(), 9, NQ, NE);
|
||||
|
||||
const int i11 = 0;
|
||||
const int i12 = transpose ? 3 : 1;
|
||||
const int i13 = transpose ? 6 : 2;
|
||||
const int i21 = transpose ? 1 : 3;
|
||||
const int i22 = 4;
|
||||
const int i23 = transpose ? 7 : 5;
|
||||
const int i31 = transpose ? 2 : 6;
|
||||
const int i32 = transpose ? 5 : 7;
|
||||
const int i33 = 8;
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
const double J11 = J(q,0,0,e);
|
||||
const double J21 = J(q,1,0,e);
|
||||
const double J31 = J(q,2,0,e);
|
||||
const double J12 = J(q,0,1,e);
|
||||
const double J22 = J(q,1,1,e);
|
||||
const double J32 = J(q,2,1,e);
|
||||
const double J13 = J(q,0,2,e);
|
||||
const double J23 = J(q,1,2,e);
|
||||
const double J33 = J(q,2,2,e);
|
||||
const double detJ = J11 * (J22 * J33 - J32 * J23) -
|
||||
/* */ J21 * (J12 * J33 - J32 * J13) +
|
||||
/* */ J31 * (J12 * J23 - J22 * J13);
|
||||
const double w_detJ = W[q] / detJ;
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J32 * J13) - (J12 * J33);
|
||||
const double A13 = (J12 * J23) - (J22 * J13);
|
||||
const double A21 = (J31 * J23) - (J21 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J21 * J13) - (J11 * J23);
|
||||
const double A31 = (J21 * J32) - (J31 * J22);
|
||||
const double A32 = (J31 * J12) - (J11 * J32);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
if (coeffDim == 6 || coeffDim == 9) // Matrix coefficient version
|
||||
{
|
||||
// First compute entries of R = MJ
|
||||
const double M11 = (!symmetric) ? coeff(i11, q, e) : coeff(0, q, e);
|
||||
const double M12 = (!symmetric) ? coeff(i12, q, e) : coeff(1, q, e);
|
||||
const double M13 = (!symmetric) ? coeff(i13, q, e) : coeff(2, q, e);
|
||||
const double M21 = (!symmetric) ? coeff(i21, q, e) : M12;
|
||||
const double M22 = (!symmetric) ? coeff(i22, q, e) : coeff(3, q, e);
|
||||
const double M23 = (!symmetric) ? coeff(i23, q, e) : coeff(4, q, e);
|
||||
const double M31 = (!symmetric) ? coeff(i31, q, e) : M13;
|
||||
const double M32 = (!symmetric) ? coeff(i32, q, e) : M23;
|
||||
const double M33 = (!symmetric) ? coeff(i33, q, e) : coeff(5, q, e);
|
||||
|
||||
const double R11 = M11*J11 + M12*J12 + M13*J13;
|
||||
const double R12 = M11*J21 + M12*J22 + M13*J23;
|
||||
const double R13 = M11*J31 + M12*J32 + M13*J33;
|
||||
const double R21 = M21*J11 + M22*J12 + M23*J13;
|
||||
const double R22 = M21*J21 + M22*J22 + M23*J23;
|
||||
const double R23 = M21*J31 + M22*J32 + M23*J33;
|
||||
const double R31 = M31*J11 + M32*J12 + M33*J13;
|
||||
const double R32 = M31*J21 + M32*J22 + M33*J23;
|
||||
const double R33 = M31*J31 + M32*J32 + M33*J33;
|
||||
|
||||
// Now set y to detJ J^{-1} R = adj(J) R
|
||||
y(i11,q,e) = w_detJ * (A11*R11 + A12*R21 + A13*R31); // 1,1
|
||||
y(i12,q,e) = w_detJ * (A11*R12 + A12*R22 + A13*R32); // 1,2
|
||||
y(i13,q,e) = w_detJ * (A11*R13 + A12*R23 + A13*R33); // 1,3
|
||||
y(i21,q,e) = w_detJ * (A21*R11 + A22*R21 + A23*R31); // 2,1
|
||||
y(i22,q,e) = w_detJ * (A21*R12 + A22*R22 + A23*R32); // 2,2
|
||||
y(i23,q,e) = w_detJ * (A21*R13 + A22*R23 + A23*R33); // 2,3
|
||||
y(i31,q,e) = w_detJ * (A31*R11 + A32*R21 + A33*R31); // 3,1
|
||||
y(i32,q,e) = w_detJ * (A31*R12 + A32*R22 + A33*R32); // 3,2
|
||||
y(i33,q,e) = w_detJ * (A31*R13 + A32*R23 + A33*R33); // 3,3
|
||||
}
|
||||
else if (coeffDim == 3) // Vector coefficient version
|
||||
{
|
||||
const double D1 = coeff(0, q, e);
|
||||
const double D2 = coeff(1, q, e);
|
||||
const double D3 = coeff(2, q, e);
|
||||
// detJ J^{-1} DJ = adj(J) DJ
|
||||
y(i11,q,e) = w_detJ * (D1*A11*J11 + D2*A12*J21 + D3*A13*J31); // 1,1
|
||||
y(i12,q,e) = w_detJ * (D1*A11*J12 + D2*A12*J22 + D3*A13*J32); // 1,2
|
||||
y(i13,q,e) = w_detJ * (D1*A11*J13 + D2*A12*J23 + D3*A13*J33); // 1,3
|
||||
y(i21,q,e) = w_detJ * (D1*A21*J11 + D2*A22*J21 + D3*A23*J31); // 2,1
|
||||
y(i22,q,e) = w_detJ * (D1*A21*J12 + D2*A22*J22 + D3*A23*J32); // 2,2
|
||||
y(i23,q,e) = w_detJ * (D1*A21*J13 + D2*A22*J23 + D3*A23*J33); // 2,3
|
||||
y(i31,q,e) = w_detJ * (D1*A31*J11 + D2*A32*J21 + D3*A33*J31); // 3,1
|
||||
y(i32,q,e) = w_detJ * (D1*A31*J12 + D2*A32*J22 + D3*A33*J32); // 3,2
|
||||
y(i33,q,e) = w_detJ * (D1*A31*J13 + D2*A32*J23 + D3*A33*J33); // 3,3
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// PA H(curl) x H(div) mass assemble 2D kernel, with factor
|
||||
// dF^{-1} C dF for a vector or matrix coefficient C.
|
||||
// If transpose, use dF^T C dF^{-T} for H(div) x H(curl).
|
||||
void PAHcurlHdivSetup2D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const bool transpose,
|
||||
const Array<double> &_w,
|
||||
const Vector &j,
|
||||
Vector &_coeff,
|
||||
Vector &op)
|
||||
{
|
||||
const int NQ = Q1D*Q1D;
|
||||
const bool symmetric = (coeffDim != 4);
|
||||
auto W = _w.Read();
|
||||
auto J = Reshape(j.Read(), NQ, 2, 2, NE);
|
||||
auto coeff = Reshape(_coeff.Read(), coeffDim, NQ, NE);
|
||||
auto y = Reshape(op.Write(), 4, NQ, NE);
|
||||
|
||||
const int i11 = 0;
|
||||
const int i12 = transpose ? 2 : 1;
|
||||
const int i21 = transpose ? 1 : 2;
|
||||
const int i22 = 3;
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
const double J11 = J(q,0,0,e);
|
||||
const double J21 = J(q,1,0,e);
|
||||
const double J12 = J(q,0,1,e);
|
||||
const double J22 = J(q,1,1,e);
|
||||
const double w_detJ = W[q] / (J11*J22) - (J21*J12);
|
||||
|
||||
if (coeffDim == 3 || coeffDim == 4) // Matrix coefficient version
|
||||
{
|
||||
// First compute entries of R = MJ
|
||||
const double M11 = coeff(i11, q, e);
|
||||
const double M12 = (!symmetric) ? coeff(i12, q, e) : coeff(1, q, e);
|
||||
const double M21 = (!symmetric) ? coeff(i21, q, e) : M12;
|
||||
const double M22 = (!symmetric) ? coeff(i22, q, e) : coeff(2, q, e);
|
||||
|
||||
const double R11 = M11*J11 + M12*J21;
|
||||
const double R12 = M11*J12 + M12*J22;
|
||||
const double R21 = M21*J11 + M22*J21;
|
||||
const double R22 = M21*J12 + M22*J22;
|
||||
|
||||
// Now set y to J^{-1} R
|
||||
y(i11,q,e) = w_detJ * ( J22*R11 - J12*R21); // 1,1
|
||||
y(i12,q,e) = w_detJ * ( J22*R12 - J12*R22); // 1,2
|
||||
y(i21,q,e) = w_detJ * (-J21*R11 + J11*R21); // 2,1
|
||||
y(i22,q,e) = w_detJ * (-J21*R12 + J11*R22); // 2,2
|
||||
}
|
||||
else if (coeffDim == 2) // Vector coefficient version
|
||||
{
|
||||
const double D1 = coeff(0, q, e);
|
||||
const double D2 = coeff(1, q, e);
|
||||
const double R11 = D1*J11;
|
||||
const double R12 = D1*J12;
|
||||
const double R21 = D2*J21;
|
||||
const double R22 = D2*J22;
|
||||
y(i11,q,e) = w_detJ * ( J22*R11 - J12*R21); // 1,1
|
||||
y(i12,q,e) = w_detJ * ( J22*R12 - J12*R22); // 1,2
|
||||
y(i21,q,e) = w_detJ * (-J21*R11 + J11*R21); // 2,1
|
||||
y(i22,q,e) = w_detJ * (-J21*R12 + J11*R22); // 2,2
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Mass operator for H(curl) and H(div) functions, using Piola transformations
|
||||
// u = dF^{-T} \hat{u} in H(curl), v = (1 / det dF) dF \hat{v} in H(div).
|
||||
void PAHcurlHdivMassApply3D(const int D1D,
|
||||
const int D1Dtest,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool scalarCoeff,
|
||||
const bool trialHcurl,
|
||||
const Array<double> &_Bo,
|
||||
const Array<double> &_Bc,
|
||||
const Array<double> &_Bot,
|
||||
const Array<double> &_Bct,
|
||||
const Vector &_op,
|
||||
const Vector &_x,
|
||||
Vector &_y)
|
||||
{
|
||||
constexpr static int MAX_D1D = HCURL_MAX_D1D;
|
||||
constexpr static int MAX_Q1D = HCURL_MAX_Q1D;
|
||||
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
|
||||
constexpr static int VDIM = 3;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Bc = Reshape(_Bc.Read(), Q1D, D1D);
|
||||
auto Bot = Reshape(_Bot.Read(), D1Dtest-1, Q1D);
|
||||
auto Bct = Reshape(_Bct.Read(), D1Dtest, Q1D);
|
||||
auto op = Reshape(_op.Read(), scalarCoeff ? 1 : 9, Q1D, Q1D, Q1D, NE);
|
||||
auto x = Reshape(_x.Read(), 3*(D1D-1)*D1D*(trialHcurl ? D1D : D1D-1), NE);
|
||||
auto y = Reshape(_y.ReadWrite(), 3*(D1Dtest-1)*D1Dtest*
|
||||
(trialHcurl ? D1Dtest-1 : D1Dtest), NE);
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
double mass[MAX_Q1D][MAX_Q1D][MAX_Q1D][VDIM];
|
||||
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int c = 0; c < VDIM; ++c)
|
||||
{
|
||||
mass[qz][qy][qx][c] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int osc = 0;
|
||||
for (int c = 0; c < VDIM; ++c) // loop over x, y, z trial components
|
||||
{
|
||||
const int D1Dz = trialHcurl ? ((c == 2) ? D1D - 1 : D1D) :
|
||||
((c == 2) ? D1D : D1D - 1);
|
||||
const int D1Dy = trialHcurl ? ((c == 1) ? D1D - 1 : D1D) :
|
||||
((c == 1) ? D1D : D1D - 1);
|
||||
const int D1Dx = trialHcurl ? ((c == 0) ? D1D - 1 : D1D) :
|
||||
((c == 0) ? D1D : D1D - 1);
|
||||
|
||||
for (int dz = 0; dz < D1Dz; ++dz)
|
||||
{
|
||||
double massXY[MAX_Q1D][MAX_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
massXY[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
double massX[MAX_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
massX[qx] = 0.0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
const double t = x(dx + ((dy + (dz * D1Dy)) * D1Dx) + osc, e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
massX[qx] += t * (trialHcurl ? ((c == 0) ? Bo(qx,dx) : Bc(qx,dx)) :
|
||||
((c == 0) ? Bc(qx,dx) : Bo(qx,dx)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double wy = trialHcurl ? ((c == 1) ? Bo(qy,dy) : Bc(qy,dy)) :
|
||||
((c == 1) ? Bc(qy,dy) : Bo(qy,dy));
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double wx = massX[qx];
|
||||
massXY[qy][qx] += wx * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
const double wz = trialHcurl ? ((c == 2) ? Bo(qz,dz) : Bc(qz,dz)) :
|
||||
((c == 2) ? Bc(qz,dz) : Bo(qz,dz));
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
mass[qz][qy][qx][c] += massXY[qy][qx] * wz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
osc += D1Dx * D1Dy * D1Dz;
|
||||
} // loop (c) over components
|
||||
|
||||
// Apply D operator.
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double O11 = op(0,qx,qy,qz,e);
|
||||
const double O12 = scalarCoeff ? 0.0 : op(1,qx,qy,qz,e);
|
||||
const double O13 = scalarCoeff ? 0.0 : op(2,qx,qy,qz,e);
|
||||
const double O21 = scalarCoeff ? 0.0 : op(3,qx,qy,qz,e);
|
||||
const double O22 = scalarCoeff ? O11 : op(4,qx,qy,qz,e);
|
||||
const double O23 = scalarCoeff ? 0.0 : op(5,qx,qy,qz,e);
|
||||
const double O31 = scalarCoeff ? 0.0 : op(6,qx,qy,qz,e);
|
||||
const double O32 = scalarCoeff ? 0.0 : op(7,qx,qy,qz,e);
|
||||
const double O33 = scalarCoeff ? O11 : op(8,qx,qy,qz,e);
|
||||
const double massX = mass[qz][qy][qx][0];
|
||||
const double massY = mass[qz][qy][qx][1];
|
||||
const double massZ = mass[qz][qy][qx][2];
|
||||
mass[qz][qy][qx][0] = (O11*massX)+(O12*massY)+(O13*massZ);
|
||||
mass[qz][qy][qx][1] = (O21*massX)+(O22*massY)+(O23*massZ);
|
||||
mass[qz][qy][qx][2] = (O31*massX)+(O32*massY)+(O33*massZ);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
double massXY[HDIV_MAX_D1D][HDIV_MAX_D1D];
|
||||
|
||||
osc = 0;
|
||||
for (int c = 0; c < VDIM; ++c) // loop over x, y, z test components
|
||||
{
|
||||
const int D1Dz = trialHcurl ? ((c == 2) ? D1Dtest : D1Dtest - 1) :
|
||||
((c == 2) ? D1Dtest - 1 : D1Dtest);
|
||||
const int D1Dy = trialHcurl ? ((c == 1) ? D1Dtest : D1Dtest - 1) :
|
||||
((c == 1) ? D1Dtest - 1 : D1Dtest);
|
||||
const int D1Dx = trialHcurl ? ((c == 0) ? D1Dtest : D1Dtest - 1) :
|
||||
((c == 0) ? D1Dtest - 1 : D1Dtest);
|
||||
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
massXY[dy][dx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double massX[HDIV_MAX_D1D];
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
massX[dx] = 0.0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
massX[dx] += mass[qz][qy][qx][c] * (trialHcurl ?
|
||||
((c == 0) ? Bct(dx,qx) : Bot(dx,qx)) :
|
||||
((c == 0) ? Bot(dx,qx) : Bct(dx,qx)));
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
const double wy = trialHcurl ? ((c == 1) ? Bct(dy,qy) : Bot(dy,qy)) :
|
||||
((c == 1) ? Bot(dy,qy) : Bct(dy,qy));
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
massXY[dy][dx] += massX[dx] * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < D1Dz; ++dz)
|
||||
{
|
||||
const double wz = trialHcurl ? ((c == 2) ? Bct(dz,qz) : Bot(dz,qz)) :
|
||||
((c == 2) ? Bot(dz,qz) : Bct(dz,qz));
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
y(dx + ((dy + (dz * D1Dy)) * D1Dx) + osc, e) +=
|
||||
massXY[dy][dx] * wz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
osc += D1Dx * D1Dy * D1Dz;
|
||||
} // loop c
|
||||
} // loop qz
|
||||
}); // end of element loop
|
||||
}
|
||||
|
||||
// Mass operator for H(curl) and H(div) functions, using Piola transformations
|
||||
// u = dF^{-T} \hat{u} in H(curl), v = (1 / det dF) dF \hat{v} in H(div).
|
||||
void PAHcurlHdivMassApply2D(const int D1D,
|
||||
const int D1Dtest,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool scalarCoeff,
|
||||
const bool trialHcurl,
|
||||
const Array<double> &_Bo,
|
||||
const Array<double> &_Bc,
|
||||
const Array<double> &_Bot,
|
||||
const Array<double> &_Bct,
|
||||
const Vector &_op,
|
||||
const Vector &_x,
|
||||
Vector &_y)
|
||||
{
|
||||
constexpr static int MAX_D1D = HCURL_MAX_D1D;
|
||||
constexpr static int MAX_Q1D = HCURL_MAX_Q1D;
|
||||
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
|
||||
constexpr static int VDIM = 2;
|
||||
|
||||
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
|
||||
auto Bc = Reshape(_Bc.Read(), Q1D, D1D);
|
||||
auto Bot = Reshape(_Bot.Read(), D1Dtest-1, Q1D);
|
||||
auto Bct = Reshape(_Bct.Read(), D1Dtest, Q1D);
|
||||
auto op = Reshape(_op.Read(), scalarCoeff ? 1 : 4, Q1D, Q1D, NE);
|
||||
auto x = Reshape(_x.Read(), 2*(D1D-1)*D1D, NE);
|
||||
auto y = Reshape(_y.ReadWrite(), 2*(D1Dtest-1)*D1Dtest, NE);
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
double mass[MAX_Q1D][MAX_Q1D][VDIM];
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int c = 0; c < VDIM; ++c)
|
||||
{
|
||||
mass[qy][qx][c] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int osc = 0;
|
||||
for (int c = 0; c < VDIM; ++c) // loop over x, y trial components
|
||||
{
|
||||
const int D1Dy = trialHcurl ? ((c == 1) ? D1D - 1 : D1D) :
|
||||
((c == 1) ? D1D : D1D - 1);
|
||||
const int D1Dx = trialHcurl ? ((c == 0) ? D1D - 1 : D1D) :
|
||||
((c == 0) ? D1D : D1D - 1);
|
||||
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
double massX[MAX_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
massX[qx] = 0.0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
const double t = x(dx + (dy * D1Dx) + osc, e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
massX[qx] += t * (trialHcurl ? ((c == 0) ? Bo(qx,dx) : Bc(qx,dx)) :
|
||||
((c == 0) ? Bc(qx,dx) : Bo(qx,dx)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double wy = trialHcurl ? ((c == 1) ? Bo(qy,dy) : Bc(qy,dy)) :
|
||||
((c == 1) ? Bc(qy,dy) : Bo(qy,dy));
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
mass[qy][qx][c] += massX[qx] * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
osc += D1Dx * D1Dy;
|
||||
} // loop (c) over components
|
||||
|
||||
// Apply D operator.
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double O11 = op(0,qx,qy,e);
|
||||
const double O12 = scalarCoeff ? 0.0 : op(1,qx,qy,e);
|
||||
const double O21 = scalarCoeff ? 0.0 : op(2,qx,qy,e);
|
||||
const double O22 = scalarCoeff ? O11 : op(3,qx,qy,e);
|
||||
const double massX = mass[qy][qx][0];
|
||||
const double massY = mass[qy][qx][1];
|
||||
mass[qy][qx][0] = (O11*massX)+(O12*massY);
|
||||
mass[qy][qx][1] = (O21*massX)+(O22*massY);
|
||||
}
|
||||
}
|
||||
|
||||
osc = 0;
|
||||
for (int c = 0; c < VDIM; ++c) // loop over x, y test components
|
||||
{
|
||||
const int D1Dy = trialHcurl ? ((c == 1) ? D1Dtest : D1Dtest - 1) :
|
||||
((c == 1) ? D1Dtest - 1 : D1Dtest);
|
||||
const int D1Dx = trialHcurl ? ((c == 0) ? D1Dtest : D1Dtest - 1) :
|
||||
((c == 0) ? D1Dtest - 1 : D1Dtest);
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double massX[HDIV_MAX_D1D];
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
massX[dx] = 0.0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
massX[dx] += mass[qy][qx][c] * (trialHcurl ?
|
||||
((c == 0) ? Bct(dx,qx) : Bot(dx,qx)) :
|
||||
((c == 0) ? Bot(dx,qx) : Bct(dx,qx)));
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
const double wy = trialHcurl ? ((c == 1) ? Bct(dy,qy) : Bot(dy,qy)) :
|
||||
((c == 1) ? Bot(dy,qy) : Bct(dy,qy));
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
y(dx + (dy * D1Dx) + osc, e) += massX[dx] * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
osc += D1Dx * D1Dy;
|
||||
} // loop c
|
||||
}); // end of element loop
|
||||
}
|
||||
|
||||
void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
AssemblePA(fes, fes);
|
||||
}
|
||||
|
||||
void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes)
|
||||
{
|
||||
// Assumes tensor-product elements
|
||||
Mesh *mesh = trial_fes.GetMesh();
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
const FiniteElement *fel = fes.GetFE(0);
|
||||
|
||||
const FiniteElement *trial_fel = trial_fes.GetFE(0);
|
||||
const VectorTensorFiniteElement *trial_el =
|
||||
dynamic_cast<const VectorTensorFiniteElement*>(trial_fel);
|
||||
MFEM_VERIFY(trial_el != NULL, "Only VectorTensorFiniteElement is supported!");
|
||||
|
||||
const FiniteElement *test_fel = test_fes.GetFE(0);
|
||||
const VectorTensorFiniteElement *test_el =
|
||||
dynamic_cast<const VectorTensorFiniteElement*>(test_fel);
|
||||
MFEM_VERIFY(test_el != NULL, "Only VectorTensorFiniteElement is supported!");
|
||||
const VectorTensorFiniteElement *el =
|
||||
dynamic_cast<const VectorTensorFiniteElement*>(fel);
|
||||
MFEM_VERIFY(el != NULL, "Only VectorTensorFiniteElement is supported!");
|
||||
|
||||
const IntegrationRule *ir
|
||||
= IntRule ? IntRule : &MassIntegrator::GetRule(*trial_el, *trial_el,
|
||||
= IntRule ? IntRule : &MassIntegrator::GetRule(*el, *el,
|
||||
*mesh->GetElementTransformation(0));
|
||||
const int dims = trial_el->GetDim();
|
||||
const int dims = el->GetDim();
|
||||
MFEM_VERIFY(dims == 2 || dims == 3, "");
|
||||
|
||||
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
@@ -721,160 +161,53 @@ void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
dim = mesh->Dimension();
|
||||
MFEM_VERIFY(dim == 2 || dim == 3, "");
|
||||
|
||||
ne = trial_fes.GetNE();
|
||||
MFEM_VERIFY(ne == test_fes.GetNE(),
|
||||
"Different meshes for test and trial spaces");
|
||||
ne = fes.GetNE();
|
||||
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS);
|
||||
mapsC = &trial_el->GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
mapsO = &trial_el->GetDofToQuadOpen(*ir, DofToQuad::TENSOR);
|
||||
mapsC = &el->GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
mapsO = &el->GetDofToQuadOpen(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = mapsC->ndof;
|
||||
quad1D = mapsC->nqpt;
|
||||
|
||||
mapsCtest = &test_el->GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
mapsOtest = &test_el->GetDofToQuadOpen(*ir, DofToQuad::TENSOR);
|
||||
dofs1Dtest = mapsCtest->ndof;
|
||||
|
||||
MFEM_VERIFY(dofs1D == mapsO->ndof + 1 && quad1D == mapsO->nqpt, "");
|
||||
|
||||
trial_fetype = trial_el->GetDerivType();
|
||||
test_fetype = test_el->GetDerivType();
|
||||
pa_data.SetSize(symmDims * nq * ne, Device::GetMemoryType());
|
||||
|
||||
const int MQsymmDim = MQ ? (MQ->GetWidth() * (MQ->GetWidth() + 1)) / 2 : 0;
|
||||
const int MQfullDim = MQ ? (MQ->GetHeight() * MQ->GetWidth()) : 0;
|
||||
const int MQdim = MQ ? (MQ->IsSymmetric() ? MQsymmDim : MQfullDim) : 0;
|
||||
const int coeffDim = MQ ? MQdim : (VQ ? VQ->GetVDim() : 1);
|
||||
|
||||
symmetric = MQ ? MQ->IsSymmetric() : true;
|
||||
|
||||
if ((trial_fetype == mfem::FiniteElement::CURL &&
|
||||
test_fetype == mfem::FiniteElement::DIV) ||
|
||||
(trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == mfem::FiniteElement::CURL))
|
||||
pa_data.SetSize((coeffDim == 1 ? 1 : dim*dim) * nq * ne,
|
||||
Device::GetMemoryType());
|
||||
else
|
||||
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne,
|
||||
Device::GetMemoryType());
|
||||
|
||||
Vector coeff(coeffDim * ne * nq);
|
||||
Vector coeff(ne * nq);
|
||||
coeff = 1.0;
|
||||
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
|
||||
if (Q || VQ || MQ)
|
||||
if (Q)
|
||||
{
|
||||
Vector D(VQ ? coeffDim : 0);
|
||||
DenseMatrix M;
|
||||
Vector Msymm;
|
||||
if (MQ)
|
||||
{
|
||||
if (symmetric)
|
||||
{
|
||||
Msymm.SetSize(MQsymmDim);
|
||||
}
|
||||
else
|
||||
{
|
||||
M.SetSize(dim);
|
||||
}
|
||||
}
|
||||
|
||||
if (VQ)
|
||||
{
|
||||
MFEM_VERIFY(coeffDim == dim, "");
|
||||
}
|
||||
if (MQ)
|
||||
{
|
||||
MFEM_VERIFY(coeffDim == MQdim, "");
|
||||
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
|
||||
}
|
||||
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
if (MQ)
|
||||
{
|
||||
if (MQ->IsSymmetric())
|
||||
{
|
||||
MQ->EvalSymmetric(Msymm, *tr, ir->IntPoint(p));
|
||||
|
||||
for (int i=0; i<MQsymmDim; ++i)
|
||||
{
|
||||
coeffh(i, p, e) = Msymm[i];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MQ->Eval(M, *tr, ir->IntPoint(p));
|
||||
|
||||
for (int i=0; i<dim; ++i)
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
coeffh(j+(i*dim), p, e) = M(i,j);
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (VQ)
|
||||
{
|
||||
VQ->Eval(D, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<coeffDim; ++i)
|
||||
{
|
||||
coeffh(i, p, e) = D[i];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype
|
||||
&& dim == 3)
|
||||
fetype = el->GetDerivType();
|
||||
|
||||
if (el->GetDerivType() == mfem::FiniteElement::CURL && dim == 3)
|
||||
{
|
||||
PAHcurlSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
|
||||
PAHcurlSetup3D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::CURL
|
||||
&& test_fetype == trial_fetype && dim == 2)
|
||||
else if (el->GetDerivType() == mfem::FiniteElement::CURL && dim == 2)
|
||||
{
|
||||
PAHcurlSetup2D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
|
||||
PAHcurlSetup2D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV
|
||||
&& test_fetype == trial_fetype && dim == 3)
|
||||
else if (el->GetDerivType() == mfem::FiniteElement::DIV && dim == 3)
|
||||
{
|
||||
PAHdivSetup3D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV
|
||||
&& test_fetype == trial_fetype && dim == 2)
|
||||
else if (el->GetDerivType() == mfem::FiniteElement::DIV && dim == 2)
|
||||
{
|
||||
PAHdivSetup2D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (((trial_fetype == mfem::FiniteElement::CURL &&
|
||||
test_fetype == mfem::FiniteElement::DIV) ||
|
||||
(trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == mfem::FiniteElement::CURL)) &&
|
||||
test_fel->GetOrder() == trial_fel->GetOrder())
|
||||
{
|
||||
if (coeffDim == 1)
|
||||
{
|
||||
PAHcurlL2Setup(nq, coeffDim, ne, ir->GetWeights(), coeff, pa_data);
|
||||
}
|
||||
else
|
||||
{
|
||||
const bool tr = (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == mfem::FiniteElement::CURL);
|
||||
if (dim == 3)
|
||||
PAHcurlHdivSetup3D(quad1D, coeffDim, ne, tr, ir->GetWeights(),
|
||||
geom->J, coeff, pa_data);
|
||||
else
|
||||
PAHcurlHdivSetup2D(quad1D, coeffDim, ne, tr, ir->GetWeights(),
|
||||
geom->J, coeff, pa_data);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
@@ -885,13 +218,12 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype)
|
||||
if (fetype == mfem::FiniteElement::CURL)
|
||||
{
|
||||
PAHcurlMassAssembleDiagonal3D(dofs1D, quad1D, ne, symmetric,
|
||||
PAHcurlMassAssembleDiagonal3D(dofs1D, quad1D, ne,
|
||||
mapsO->B, mapsC->B, pa_data, diag);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == trial_fetype)
|
||||
else if (fetype == mfem::FiniteElement::DIV)
|
||||
{
|
||||
PAHdivMassAssembleDiagonal3D(dofs1D, quad1D, ne,
|
||||
mapsO->B, mapsC->B, pa_data, diag);
|
||||
@@ -903,13 +235,12 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
|
||||
}
|
||||
else
|
||||
{
|
||||
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype)
|
||||
if (fetype == mfem::FiniteElement::CURL)
|
||||
{
|
||||
PAHcurlMassAssembleDiagonal2D(dofs1D, quad1D, ne, symmetric,
|
||||
PAHcurlMassAssembleDiagonal2D(dofs1D, quad1D, ne,
|
||||
mapsO->B, mapsC->B, pa_data, diag);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == trial_fetype)
|
||||
else if (fetype == mfem::FiniteElement::DIV)
|
||||
{
|
||||
PAHdivMassAssembleDiagonal2D(dofs1D, quad1D, ne,
|
||||
mapsO->B, mapsC->B, pa_data, diag);
|
||||
@@ -925,33 +256,16 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype)
|
||||
if (fetype == mfem::FiniteElement::CURL)
|
||||
{
|
||||
PAHcurlMassApply3D(dofs1D, quad1D, ne, symmetric, mapsO->B, mapsC->B,
|
||||
mapsO->Bt, mapsC->Bt, pa_data, x, y);
|
||||
PAHcurlMassApply3D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == trial_fetype)
|
||||
else if (fetype == mfem::FiniteElement::DIV)
|
||||
{
|
||||
PAHdivMassApply3D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::CURL &&
|
||||
test_fetype == mfem::FiniteElement::DIV)
|
||||
{
|
||||
const bool scalarCoeff = !(VQ || MQ);
|
||||
PAHcurlHdivMassApply3D(dofs1D, dofs1Dtest, quad1D, ne, scalarCoeff,
|
||||
true, mapsO->B, mapsC->B, mapsOtest->Bt,
|
||||
mapsCtest->Bt, pa_data, x, y);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == mfem::FiniteElement::CURL)
|
||||
{
|
||||
const bool scalarCoeff = !(VQ || MQ);
|
||||
PAHcurlHdivMassApply3D(dofs1D, dofs1Dtest, quad1D, ne, scalarCoeff,
|
||||
false, mapsO->B, mapsC->B, mapsOtest->Bt,
|
||||
mapsCtest->Bt, pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
@@ -959,28 +273,16 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
else
|
||||
{
|
||||
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype)
|
||||
if (fetype == mfem::FiniteElement::CURL)
|
||||
{
|
||||
PAHcurlMassApply2D(dofs1D, quad1D, ne, symmetric, mapsO->B, mapsC->B,
|
||||
mapsO->Bt, mapsC->Bt, pa_data, x, y);
|
||||
PAHcurlMassApply2D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
}
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == trial_fetype)
|
||||
else if (fetype == mfem::FiniteElement::DIV)
|
||||
{
|
||||
PAHdivMassApply2D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
}
|
||||
else if ((trial_fetype == mfem::FiniteElement::CURL &&
|
||||
test_fetype == mfem::FiniteElement::DIV) ||
|
||||
(trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == mfem::FiniteElement::CURL))
|
||||
{
|
||||
const bool scalarCoeff = !(VQ || MQ);
|
||||
const bool trialHcurl = (trial_fetype == mfem::FiniteElement::CURL);
|
||||
PAHcurlHdivMassApply2D(dofs1D, dofs1Dtest, quad1D, ne, scalarCoeff,
|
||||
trialHcurl, mapsO->B, mapsC->B, mapsOtest->Bt,
|
||||
mapsCtest->Bt, pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
@@ -1046,12 +348,12 @@ void MixedVectorGradientIntegrator::AssemblePA(const FiniteElementSpace
|
||||
// Use the same setup functions as VectorFEMassIntegrator.
|
||||
if (test_el->GetDerivType() == mfem::FiniteElement::CURL && dim == 3)
|
||||
{
|
||||
PAHcurlSetup3D(quad1D, 1, ne, ir->GetWeights(), geom->J,
|
||||
PAHcurlSetup3D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (test_el->GetDerivType() == mfem::FiniteElement::CURL && dim == 2)
|
||||
{
|
||||
PAHcurlSetup2D(quad1D, 1, ne, ir->GetWeights(), geom->J,
|
||||
PAHcurlSetup2D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else
|
||||
|
||||
+14
-37
@@ -12,6 +12,7 @@
|
||||
// Implementation of Coefficient class
|
||||
|
||||
#include "fem.hpp"
|
||||
#include "../linalg/dtensor.hpp"
|
||||
|
||||
#include <cmath>
|
||||
#include <limits>
|
||||
@@ -21,6 +22,13 @@ namespace mfem
|
||||
|
||||
using namespace std;
|
||||
|
||||
double QuadratureCoefficient::Eval(ElementTransformation & T,
|
||||
const IntegrationPoint & ip)
|
||||
{
|
||||
auto coeff = mfem::Reshape(qData->HostRead(), nip, NE);
|
||||
return coeff(ip.index, T.ElementNo);
|
||||
}
|
||||
|
||||
double PWConstCoefficient::Eval(ElementTransformation & T,
|
||||
const IntegrationPoint & ip)
|
||||
{
|
||||
@@ -209,24 +217,18 @@ void GradientGridFunctionCoefficient::Eval(
|
||||
GridFunc->GetGradients(T, ir, M);
|
||||
}
|
||||
|
||||
CurlGridFunctionCoefficient::CurlGridFunctionCoefficient(
|
||||
CurlGridFunctionCoefficient::CurlGridFunctionCoefficient (
|
||||
const GridFunction *gf)
|
||||
: VectorCoefficient(0)
|
||||
: VectorCoefficient ((gf) ?
|
||||
gf -> FESpace() -> GetMesh() -> SpaceDimension() : 0)
|
||||
{
|
||||
SetGridFunction(gf);
|
||||
GridFunc = gf;
|
||||
}
|
||||
|
||||
void CurlGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
|
||||
{
|
||||
if (gf)
|
||||
{
|
||||
int sdim = gf -> FESpace() -> GetMesh() -> SpaceDimension();
|
||||
MFEM_VERIFY(sdim == 2 || sdim == 3,
|
||||
"CurlGridFunctionCoefficient "
|
||||
"only defind for spaces of dimension 2 or 3.");
|
||||
}
|
||||
GridFunc = gf;
|
||||
vdim = (gf) ? (2 * gf -> FESpace() -> GetMesh() -> SpaceDimension() - 3) : 0;
|
||||
GridFunc = gf; vdim = (gf) ?
|
||||
gf -> FESpace() -> GetMesh() -> SpaceDimension() : 0;
|
||||
}
|
||||
|
||||
void CurlGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
@@ -319,31 +321,6 @@ void MatrixFunctionCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
}
|
||||
}
|
||||
|
||||
void MatrixFunctionCoefficient::EvalSymmetric(Vector &K,
|
||||
ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_VERIFY(symmetric && height == width && height < 4 && SymmFunction,
|
||||
"MatrixFunctionCoefficient is not symmetric");
|
||||
|
||||
double x[3];
|
||||
Vector transip(x, 3);
|
||||
|
||||
T.Transform(ip, transip);
|
||||
|
||||
K.SetSize((width * (width + 1)) / 2); // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
|
||||
if (SymmFunction)
|
||||
{
|
||||
(*SymmFunction)(transip, K);
|
||||
}
|
||||
|
||||
if (Q)
|
||||
{
|
||||
K *= Q->Eval(T, ip, GetTime());
|
||||
}
|
||||
}
|
||||
|
||||
MatrixArrayCoefficient::MatrixArrayCoefficient (int dim)
|
||||
: MatrixCoefficient (dim)
|
||||
{
|
||||
|
||||
+30
-38
@@ -30,10 +30,7 @@ class ParMesh;
|
||||
/** @brief Base class Coefficients that optionally depend on space and time.
|
||||
These are used by the BilinearFormIntegrator, LinearFormIntegrator, and
|
||||
NonlinearFormIntegrator classes to represent the physical coefficients in
|
||||
the PDEs that are being discretized. This class can also be used in a more
|
||||
general way to represent functions that don't necessarily belong to a FE
|
||||
space, e.g., to project onto GridFunctions to use as initial conditions,
|
||||
exact solutions, etc. See, e.g., ex4 or ex22 for these uses. */
|
||||
the PDEs that are being discretized. */
|
||||
class Coefficient
|
||||
{
|
||||
protected:
|
||||
@@ -87,6 +84,33 @@ public:
|
||||
{ return (constant); }
|
||||
};
|
||||
|
||||
|
||||
/// class for quadrature coefficient
|
||||
class QuadratureCoefficient : public Coefficient
|
||||
{
|
||||
|
||||
private:
|
||||
const int nip;
|
||||
const int NE;
|
||||
public:
|
||||
Vector *qData{nullptr};
|
||||
|
||||
//Set external data
|
||||
QuadratureCoefficient(Vector *Data, int in_nip, int in_NE)
|
||||
: qData(Data), nip(in_nip), NE(in_NE)
|
||||
{ }
|
||||
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
Vector *Data()
|
||||
{
|
||||
return qData;
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
/// class for piecewise constant coefficient
|
||||
/** @brief A piecewise constant coefficient with the constants keyed
|
||||
off the element attribute numbers. */
|
||||
class PWConstCoefficient : public Coefficient
|
||||
@@ -695,16 +719,13 @@ class MatrixCoefficient
|
||||
protected:
|
||||
int height, width;
|
||||
double time;
|
||||
bool symmetric;
|
||||
|
||||
public:
|
||||
/// Construct a dim x dim matrix coefficient.
|
||||
explicit MatrixCoefficient(int dim, bool symm=false)
|
||||
{ height = width = dim; time = 0.; symmetric = symm; }
|
||||
explicit MatrixCoefficient(int dim) { height = width = dim; time = 0.; }
|
||||
|
||||
/// Construct a h x w matrix coefficient.
|
||||
MatrixCoefficient(int h, int w, bool symm=false) :
|
||||
height(h), width(w), time(0.), symmetric(symm) { }
|
||||
MatrixCoefficient(int h, int w) : height(h), width(w), time(0.) { }
|
||||
|
||||
/// Set the time for time dependent coefficients
|
||||
void SetTime(double t) { time = t; }
|
||||
@@ -721,9 +742,6 @@ public:
|
||||
/// For backward compatibility get the width of the matrix.
|
||||
int GetVDim() const { return width; }
|
||||
|
||||
void SetSymmetric(bool s) { symmetric = s; }
|
||||
bool IsSymmetric() const { return symmetric; }
|
||||
|
||||
/** @brief Evaluate the matrix coefficient in the element described by @a T
|
||||
at the point @a ip, storing the result in @a K. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
@@ -732,15 +750,6 @@ public:
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) = 0;
|
||||
|
||||
/** @brief Evaluate the upper triangular entries of the matrix coefficient
|
||||
in the symmetric case, similarly to Eval. Matrix entry (i,j) is stored
|
||||
in K[j - i + os_i] for 0 <= i <= j < width, os_0 = 0,
|
||||
os_{i+1} = os_i + width - i. That is, K = {M(0,0), ..., M(0,w-1),
|
||||
M(1,1), ..., M(1,w-1), ..., M(w-1,w-1) with w = width. */
|
||||
virtual void EvalSymmetric(Vector &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{ mfem_error("MatrixCoefficient::EvalSymmetric"); }
|
||||
|
||||
virtual ~MatrixCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -768,7 +777,6 @@ class MatrixFunctionCoefficient : public MatrixCoefficient
|
||||
{
|
||||
private:
|
||||
void (*Function)(const Vector &, DenseMatrix &);
|
||||
void (*SymmFunction)(const Vector &, Vector &);
|
||||
void (*TDFunction)(const Vector &, double, DenseMatrix &);
|
||||
Coefficient *Q;
|
||||
DenseMatrix mat;
|
||||
@@ -806,26 +814,10 @@ public:
|
||||
mat.SetSize(0);
|
||||
}
|
||||
|
||||
/// Construct a symmetric square matrix coefficient from a C-function
|
||||
/// defining a vector function used by EvalSymmetric
|
||||
MatrixFunctionCoefficient(int dim, void (*F)(const Vector &, Vector &),
|
||||
Coefficient *q = NULL)
|
||||
: MatrixCoefficient(dim, true), Q(q)
|
||||
{
|
||||
SymmFunction = F;
|
||||
Function = NULL;
|
||||
TDFunction = NULL;
|
||||
mat.SetSize(0);
|
||||
}
|
||||
|
||||
/// Evaluate the matrix coefficient at @a ip.
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/// Evaluate the symmetric matrix coefficient at @a ip.
|
||||
virtual void EvalSymmetric(Vector &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
virtual ~MatrixFunctionCoefficient() { }
|
||||
};
|
||||
|
||||
|
||||
+193
-442
File diff suppressed because it is too large
Load Diff
+9
-39
@@ -99,8 +99,8 @@ public:
|
||||
ComplexOperator::Convention
|
||||
convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
/** @brief Create a ComplexLinearForm on the FiniteElementSpace @a fes, using
|
||||
the same integrators as the LinearForms @a lf_r (real) and @a lf_i (imag).
|
||||
/** @brief Create a ComplexLinearForm on the FiniteElementSpace @a f, using
|
||||
the same integrators as the LinearForms @a lfr (real) and @a lfi (imag) .
|
||||
|
||||
The pointer @a fes is not owned by the newly constructed object.
|
||||
|
||||
@@ -195,8 +195,8 @@ private:
|
||||
BilinearForm *blfr;
|
||||
BilinearForm *blfi;
|
||||
|
||||
/* These methods check if the real/imag parts of the sesquilinear form are
|
||||
not empty */
|
||||
/* These methods check if the real/imag parts of the sesqulinear form are not
|
||||
empty */
|
||||
bool RealInteg();
|
||||
bool ImagInteg();
|
||||
|
||||
@@ -204,7 +204,7 @@ public:
|
||||
SesquilinearForm(FiniteElementSpace *fes,
|
||||
ComplexOperator::Convention
|
||||
convention = ComplexOperator::HERMITIAN);
|
||||
/** @brief Create a SesquilinearForm on the FiniteElementSpace @a fes, using
|
||||
/** @brief Create a SesquilinearForm on the FiniteElementSpace @a f, using
|
||||
the same integrators as the BilinearForms @a bfr and @a bfi .
|
||||
|
||||
The pointer @a fes is not owned by the newly constructed object.
|
||||
@@ -219,21 +219,6 @@ public:
|
||||
void SetConvention(const ComplexOperator::Convention &
|
||||
convention) { conv = convention; }
|
||||
|
||||
/// Set the desired assembly level.
|
||||
/** Valid choices are:
|
||||
|
||||
- AssemblyLevel::FULL (default)
|
||||
- AssemblyLevel::PARTIAL
|
||||
- AssemblyLevel::ELEMENT
|
||||
- AssemblyLevel::NONE
|
||||
|
||||
This method must be called before assembly. */
|
||||
void SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
{
|
||||
blfr->SetAssemblyLevel(assembly_level);
|
||||
blfi->SetAssemblyLevel(assembly_level);
|
||||
}
|
||||
|
||||
BilinearForm & real() { return *blfr; }
|
||||
BilinearForm & imag() { return *blfi; }
|
||||
const BilinearForm & real() const { return *blfr; }
|
||||
@@ -324,7 +309,7 @@ protected:
|
||||
public:
|
||||
|
||||
/* @brief Construct a ParComplexGridFunction associated with the
|
||||
ParFiniteElementSpace @a *pf. */
|
||||
ParFiniteElementSpace @a *f. */
|
||||
ParComplexGridFunction(ParFiniteElementSpace *pf);
|
||||
|
||||
void Update();
|
||||
@@ -416,8 +401,8 @@ public:
|
||||
convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
/** @brief Create a ParComplexLinearForm on the ParFiniteElementSpace @a pf,
|
||||
using the same integrators as the LinearForms @a plf_r (real) and
|
||||
@a plf_i (imag).
|
||||
using the same integrators as the LinearForms @a plfr (real) and @a plfi
|
||||
(imag) .
|
||||
|
||||
The pointer @a fes is not owned by the newly constructed object.
|
||||
|
||||
@@ -493,7 +478,7 @@ public:
|
||||
/** Class for a parallel sesquilinear form
|
||||
|
||||
A sesquilinear form is a generalization of a bilinear form to complex-valued
|
||||
fields. Sesquilinear forms are linear in the second argument but the
|
||||
fields. Sesquilinear forms are linear in the second argument but but the
|
||||
first argument involves a complex conjugate in the sense that:
|
||||
|
||||
a(alpha u, beta v) = conj(alpha) beta a(u, v)
|
||||
@@ -539,21 +524,6 @@ public:
|
||||
void SetConvention(const ComplexOperator::Convention &
|
||||
convention) { conv = convention; }
|
||||
|
||||
/// Set the desired assembly level.
|
||||
/** Valid choices are:
|
||||
|
||||
- AssemblyLevel::FULL (default)
|
||||
- AssemblyLevel::PARTIAL
|
||||
- AssemblyLevel::ELEMENT
|
||||
- AssemblyLevel::NONE
|
||||
|
||||
This method must be called before assembly. */
|
||||
void SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
{
|
||||
pblfr->SetAssemblyLevel(assembly_level);
|
||||
pblfi->SetAssemblyLevel(assembly_level);
|
||||
}
|
||||
|
||||
ParBilinearForm & real() { return *pblfr; }
|
||||
ParBilinearForm & imag() { return *pblfi; }
|
||||
const ParBilinearForm & real() const { return *pblfr; }
|
||||
|
||||
+8
-40
@@ -415,6 +415,9 @@ void VisItDataCollection::SetMesh(MPI_Comm comm, Mesh *new_mesh)
|
||||
void VisItDataCollection::RegisterField(const std::string& name,
|
||||
GridFunction *gf)
|
||||
{
|
||||
DataCollection::RegisterField(name, gf);
|
||||
field_info_map[name] = VisItFieldInfo("nodes", gf->VectorDim());
|
||||
|
||||
int LOD = 1;
|
||||
if (gf->FESpace()->GetNURBSext())
|
||||
{
|
||||
@@ -428,27 +431,6 @@ void VisItDataCollection::RegisterField(const std::string& name,
|
||||
}
|
||||
}
|
||||
|
||||
DataCollection::RegisterField(name, gf);
|
||||
field_info_map[name] = VisItFieldInfo("nodes", gf->VectorDim(), LOD);
|
||||
visit_levels_of_detail = std::max(visit_levels_of_detail, LOD);
|
||||
}
|
||||
|
||||
void VisItDataCollection::RegisterQField(const std::string& name,
|
||||
QuadratureFunction *qf)
|
||||
{
|
||||
int LOD = -1;
|
||||
Mesh *mesh = qf->GetSpace()->GetMesh();
|
||||
for (int e=0; e<qf->GetSpace()->GetNE(); e++)
|
||||
{
|
||||
int locLOD = GlobGeometryRefiner.GetRefinementLevelFromElems(
|
||||
mesh->GetElementBaseGeometry(e),
|
||||
qf->GetElementIntRule(e).GetNPoints());
|
||||
|
||||
LOD = std::max(LOD,locLOD);
|
||||
}
|
||||
|
||||
DataCollection::RegisterQField(name, qf);
|
||||
field_info_map[name] = VisItFieldInfo("elements", 1, LOD);
|
||||
visit_levels_of_detail = std::max(visit_levels_of_detail, LOD);
|
||||
}
|
||||
|
||||
@@ -616,28 +598,14 @@ void VisItDataCollection::LoadFields()
|
||||
// TODO: 1) load parallel GridFunction on one processor
|
||||
if (serial)
|
||||
{
|
||||
if ((it->second).association == "nodes")
|
||||
{
|
||||
field_map.Register(it->first, new GridFunction(mesh, file), own_data);
|
||||
}
|
||||
else if ((it->second).association == "elements")
|
||||
{
|
||||
q_field_map.Register(it->first, new QuadratureFunction(mesh, file), own_data);
|
||||
}
|
||||
field_map.Register(it->first, new GridFunction(mesh, file), own_data);
|
||||
}
|
||||
else
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
if ((it->second).association == "nodes")
|
||||
{
|
||||
field_map.Register(
|
||||
it->first,
|
||||
new ParGridFunction(dynamic_cast<ParMesh*>(mesh), file), own_data);
|
||||
}
|
||||
else if ((it->second).association == "elements")
|
||||
{
|
||||
q_field_map.Register(it->first, new QuadratureFunction(mesh, file), own_data);
|
||||
}
|
||||
field_map.Register(
|
||||
it->first,
|
||||
new ParGridFunction(dynamic_cast<ParMesh*>(mesh), file), own_data);
|
||||
#else
|
||||
error = READ_ERROR;
|
||||
MFEM_WARNING("Reading parallel format in serial is not supported");
|
||||
@@ -672,7 +640,7 @@ std::string VisItDataCollection::GetVisItRootString()
|
||||
{
|
||||
ftags["assoc"] = picojson::value((it->second).association);
|
||||
ftags["comps"] = picojson::value(to_string((it->second).num_components));
|
||||
ftags["lod"] = picojson::value(to_string((it->second).lod));
|
||||
ftags["lod"] = picojson::value(to_string(visit_levels_of_detail));
|
||||
field["path"] = picojson::value(path_str + it->first + file_ext_format);
|
||||
field["tags"] = picojson::value(ftags);
|
||||
fields[it->first] = picojson::value(field);
|
||||
|
||||
+3
-10
@@ -391,10 +391,9 @@ class VisItFieldInfo
|
||||
public:
|
||||
std::string association;
|
||||
int num_components;
|
||||
int lod;
|
||||
VisItFieldInfo() { association = ""; num_components = 0; lod = 1;}
|
||||
VisItFieldInfo(std::string _association, int _num_components, int _lod = 1)
|
||||
{ association = _association; num_components = _num_components; lod =_lod;}
|
||||
VisItFieldInfo() { association = ""; num_components = 0; }
|
||||
VisItFieldInfo(std::string _association, int _num_components)
|
||||
{ association = _association; num_components = _num_components; }
|
||||
};
|
||||
|
||||
/// Data collection with VisIt I/O routines
|
||||
@@ -446,12 +445,6 @@ public:
|
||||
/// Add a grid function to the collection and update the root file
|
||||
virtual void RegisterField(const std::string& field_name, GridFunction *gf);
|
||||
|
||||
/// Add a quadrature function to the collection and update the root file.
|
||||
/** Visualization of quadrature function is not supported in VisIt(3.12).
|
||||
A patch has been sent to VisIt developers in June 2020. */
|
||||
virtual void RegisterQField(const std::string& q_field_name,
|
||||
QuadratureFunction *qf);
|
||||
|
||||
/// Set VisIt parameter: default levels of detail for the MultiresControl
|
||||
void SetLevelsOfDetail(int levels_of_detail);
|
||||
|
||||
|
||||
+15
-21
@@ -552,32 +552,26 @@ void IntegrationPointTransformation::Transform (const IntegrationRule &ir1,
|
||||
}
|
||||
}
|
||||
|
||||
void FaceElementTransformations::SetIntPoint(const IntegrationPoint *face_ip)
|
||||
void FaceElementTransformations::SetIntPoint(const IntegrationPoint *ip)
|
||||
{
|
||||
IsoparametricTransformation::SetIntPoint(face_ip);
|
||||
IsoparametricTransformation::SetIntPoint(ip);
|
||||
|
||||
if (mask & 4)
|
||||
if (Elem1)
|
||||
{
|
||||
Loc1.Transform(*face_ip, eip1);
|
||||
if (Elem1)
|
||||
{
|
||||
Elem1->SetIntPoint(&eip1);
|
||||
}
|
||||
Loc1.Transform(*ip, eip1);
|
||||
Elem1->SetIntPoint(&eip1);
|
||||
}
|
||||
if (mask & 8)
|
||||
if (Elem2)
|
||||
{
|
||||
Loc2.Transform(*face_ip, eip2);
|
||||
if (Elem2)
|
||||
{
|
||||
Elem2->SetIntPoint(&eip2);
|
||||
}
|
||||
Loc2.Transform(*ip, eip2);
|
||||
Elem2->SetIntPoint(&eip2);
|
||||
}
|
||||
}
|
||||
|
||||
ElementTransformation &
|
||||
FaceElementTransformations::GetElement1Transformation()
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_ELEM1 && Elem1 != NULL, "The ElementTransformation "
|
||||
MFEM_VERIFY(mask & 1 && Elem1 != NULL, "The ElementTransformation "
|
||||
"for the element has not been configured for side 1.");
|
||||
return *Elem1;
|
||||
}
|
||||
@@ -585,7 +579,7 @@ FaceElementTransformations::GetElement1Transformation()
|
||||
ElementTransformation &
|
||||
FaceElementTransformations::GetElement2Transformation()
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_ELEM2 && Elem2 != NULL, "The ElementTransformation "
|
||||
MFEM_VERIFY(mask & 2 && Elem2 != NULL, "The ElementTransformation "
|
||||
"for the element has not been configured for side 2.");
|
||||
return *Elem2;
|
||||
}
|
||||
@@ -593,7 +587,7 @@ FaceElementTransformations::GetElement2Transformation()
|
||||
IntegrationPointTransformation &
|
||||
FaceElementTransformations::GetIntPoint1Transformation()
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_LOC1, "The IntegrationPointTransformation "
|
||||
MFEM_VERIFY(mask & 4, "The IntegrationPointTransformation "
|
||||
"for the element has not been configured for side 1.");
|
||||
return Loc1;
|
||||
}
|
||||
@@ -601,7 +595,7 @@ FaceElementTransformations::GetIntPoint1Transformation()
|
||||
IntegrationPointTransformation &
|
||||
FaceElementTransformations::GetIntPoint2Transformation()
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_LOC2, "The IntegrationPointTransformation "
|
||||
MFEM_VERIFY(mask & 8, "The IntegrationPointTransformation "
|
||||
"for the element has not been configured for side 2.");
|
||||
return Loc2;
|
||||
}
|
||||
@@ -609,7 +603,7 @@ FaceElementTransformations::GetIntPoint2Transformation()
|
||||
void FaceElementTransformations::Transform(const IntegrationPoint &ip,
|
||||
Vector &trans)
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_FACE, "The ElementTransformation "
|
||||
MFEM_VERIFY(mask & 16, "The ElementTransformation "
|
||||
"for the face has not been configured.");
|
||||
IsoparametricTransformation::Transform(ip, trans);
|
||||
}
|
||||
@@ -617,7 +611,7 @@ void FaceElementTransformations::Transform(const IntegrationPoint &ip,
|
||||
void FaceElementTransformations::Transform(const IntegrationRule &ir,
|
||||
DenseMatrix &tr)
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_FACE, "The ElementTransformation "
|
||||
MFEM_VERIFY(mask & 16, "The ElementTransformation "
|
||||
"for the face has not been configured.");
|
||||
IsoparametricTransformation::Transform(ir, tr);
|
||||
}
|
||||
@@ -625,7 +619,7 @@ void FaceElementTransformations::Transform(const IntegrationRule &ir,
|
||||
void FaceElementTransformations::Transform(const DenseMatrix &matrix,
|
||||
DenseMatrix &result)
|
||||
{
|
||||
MFEM_VERIFY(mask & HAVE_FACE, "The ElementTransformation "
|
||||
MFEM_VERIFY(mask & 16, "The ElementTransformation "
|
||||
"for the face has not been configured.");
|
||||
IsoparametricTransformation::Transform(matrix, result);
|
||||
}
|
||||
|
||||
+8
-83
@@ -439,57 +439,15 @@ public:
|
||||
void Transform (const IntegrationRule &, IntegrationRule &);
|
||||
};
|
||||
|
||||
/** @brief A specialized ElementTransformation class representing a face and
|
||||
its two neighboring elements.
|
||||
|
||||
This class can be used as a container for the element transformation data
|
||||
needed for integrating discontinuous fields on element interfaces in a
|
||||
Discontinuous Galerkin (DG) context.
|
||||
|
||||
The secondary purpose of this class is to enable the
|
||||
GridFunction::GetValue function, and various related functions, to properly
|
||||
evaluate fields with limited continuity on boundary elements.
|
||||
*/
|
||||
class FaceElementTransformations : public IsoparametricTransformation
|
||||
{
|
||||
private:
|
||||
|
||||
// Bitwise OR of ConfigMasks
|
||||
int mask;
|
||||
|
||||
IntegrationPoint eip1, eip2;
|
||||
|
||||
protected: // interface for Mesh to be able to configure this object.
|
||||
|
||||
friend class Mesh;
|
||||
#ifdef MFEM_USE_MPI
|
||||
friend class ParMesh;
|
||||
#endif
|
||||
|
||||
/// Set the mask indicating which portions of the object have been setup
|
||||
/** The argument @a m is a bitmask used in
|
||||
Mesh::GetFaceElementTransformations to indicate which portions of the
|
||||
FaceElementTransformations object have been configured.
|
||||
|
||||
mask & 1: Elem1 is configured
|
||||
mask & 2: Elem2 is configured
|
||||
mask & 4: Loc1 is configured
|
||||
mask & 8: Loc2 is configured
|
||||
mask & 16: The Face transformation itself is configured
|
||||
*/
|
||||
void SetConfigurationMask(int m) { mask = m; }
|
||||
|
||||
public:
|
||||
|
||||
enum ConfigMasks
|
||||
{
|
||||
HAVE_ELEM1 = 1, ///< Element on side 1 is configured
|
||||
HAVE_ELEM2 = 2, ///< Element on side 2 is configured
|
||||
HAVE_LOC1 = 4, ///< Point transformation for side 1 is configured
|
||||
HAVE_LOC2 = 8, ///< Point transformation for side 2 is configured
|
||||
HAVE_FACE = 16 ///< Face transformation is configured
|
||||
};
|
||||
|
||||
int Elem1No, Elem2No;
|
||||
Geometry::Type &FaceGeom; ///< @deprecated Use GetGeometryType instead
|
||||
ElementTransformation *Elem1, *Elem2;
|
||||
@@ -508,10 +466,10 @@ public:
|
||||
*/
|
||||
void SetGeometryType(Geometry::Type g) { geom = g; }
|
||||
|
||||
/** @brief Return the mask defining the configuration state.
|
||||
|
||||
The mask value indicates which portions of FaceElementTransformations
|
||||
object have been configured.
|
||||
/// Set the mask indicating which portions of the object have been setup
|
||||
/** The argument @a m is a bitmask used in
|
||||
Mesh::GetFaceElementTransformations to indicate which portions of the
|
||||
FaceElement Transformations object have been configured.
|
||||
|
||||
mask & 1: Elem1 is configured
|
||||
mask & 2: Elem2 is configured
|
||||
@@ -519,45 +477,12 @@ public:
|
||||
mask & 8: Loc2 is configured
|
||||
mask & 16: The Face transformation itself is configured
|
||||
*/
|
||||
int GetConfigurationMask() const { return mask; }
|
||||
void SetConfigurationMask(int m) { mask = m; }
|
||||
int GetConfigurationMask() const { return mask; }
|
||||
|
||||
/** @brief Set the integration point in the Face and the two neighboring
|
||||
elements, if present.
|
||||
|
||||
The point @a face_ip must be in the reference coordinate system of the
|
||||
face.
|
||||
*/
|
||||
void SetIntPoint(const IntegrationPoint *face_ip);
|
||||
|
||||
/** @brief Set the integration point in the Face and the two neighboring
|
||||
elements, if present.
|
||||
|
||||
This is a more expressive member function name than SetIntPoint, which
|
||||
in this special case, does the same thing. This function can be used for
|
||||
greater code clarity.
|
||||
*/
|
||||
inline void SetAllIntPoints(const IntegrationPoint *face_ip)
|
||||
{ FaceElementTransformations::SetIntPoint(face_ip); }
|
||||
|
||||
/** @brief Get a const reference to the integration point in neighboring
|
||||
element 1 corresponding to the currently set integration point on the
|
||||
face.
|
||||
|
||||
This IntegrationPoint object will only contain up-to-date data if
|
||||
SetIntPoint or SetAllIntPoints has been called with the latest
|
||||
integration point for the face and the appropriate point transformation
|
||||
has been configured. */
|
||||
const IntegrationPoint &GetElement1IntPoint() { return eip1; }
|
||||
|
||||
/** @brief Get a const reference to the integration point in neighboring
|
||||
element 2 corresponding to the currently set integration point on the
|
||||
face.
|
||||
|
||||
This IntegrationPoint object will only contain up-to-date data if
|
||||
SetIntPoint or SetAllIntPoints has been called with the latest
|
||||
integration point for the face and the appropriate point transformation
|
||||
has been configured. */
|
||||
const IntegrationPoint &GetElement2IntPoint() { return eip2; }
|
||||
elements, if present. */
|
||||
void SetIntPoint(const IntegrationPoint *ip);
|
||||
|
||||
virtual void Transform(const IntegrationPoint &, Vector &);
|
||||
virtual void Transform(const IntegrationRule &, DenseMatrix &);
|
||||
|
||||
+1
-4
@@ -37,8 +37,7 @@ public:
|
||||
ClosedUniform = 4, ///< Nodes: x_i = i/(n-1), i=0,...,n-1
|
||||
OpenHalfUniform = 5, ///< Nodes: x_i = (i+1/2)/n, i=0,...,n-1
|
||||
Serendipity = 6, ///< Serendipity basis (squares / cubes)
|
||||
ClosedGL = 7, ///< Closed GaussLegendre
|
||||
NumBasisTypes = 8 /**< Keep track of maximum types to prevent
|
||||
NumBasisTypes = 7 /**< Keep track of maximum types to prevent
|
||||
hard-coding */
|
||||
};
|
||||
/** @brief If the input does not represents a valid BasisType, abort with an
|
||||
@@ -70,7 +69,6 @@ public:
|
||||
case ClosedUniform: return Quadrature1D::ClosedUniform;
|
||||
case OpenHalfUniform: return Quadrature1D::OpenHalfUniform;
|
||||
case Serendipity: return Quadrature1D::GaussLobatto;
|
||||
case ClosedGL: return Quadrature1D::ClosedGL;
|
||||
}
|
||||
return Quadrature1D::Invalid;
|
||||
}
|
||||
@@ -84,7 +82,6 @@ public:
|
||||
case Quadrature1D::OpenUniform: return OpenUniform;
|
||||
case Quadrature1D::ClosedUniform: return ClosedUniform;
|
||||
case Quadrature1D::OpenHalfUniform: return OpenHalfUniform;
|
||||
case Quadrature1D::ClosedGL: return ClosedGL;
|
||||
}
|
||||
return Invalid;
|
||||
}
|
||||
|
||||
@@ -756,12 +756,6 @@ public:
|
||||
/// Return the total number of quadrature points.
|
||||
int GetSize() const { return size; }
|
||||
|
||||
/// Returns the mesh
|
||||
inline Mesh *GetMesh() const { return mesh; }
|
||||
|
||||
/// Returns number of elements in the mesh.
|
||||
inline int GetNE() const { return mesh->GetNE(); }
|
||||
|
||||
/// Get the IntegrationRule associated with mesh element @a idx.
|
||||
const IntegrationRule &GetElementIntRule(int idx) const
|
||||
{ return *int_rule[mesh->GetElementBaseGeometry(idx)]; }
|
||||
|
||||
+33
-141
@@ -1344,14 +1344,15 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
|
||||
return NULL;
|
||||
}
|
||||
ir = FindInIntPts(Geom, Times-1);
|
||||
if (ir) { return ir; }
|
||||
|
||||
ir = new IntegrationRule(Times-1);
|
||||
for (int i = 1; i < Times; i++)
|
||||
if (ir == NULL)
|
||||
{
|
||||
IntegrationPoint &ip = ir->IntPoint(i-1);
|
||||
ip.x = double(i) / Times;
|
||||
ip.y = ip.z = 0.0;
|
||||
ir = new IntegrationRule(Times-1);
|
||||
for (int i = 1; i < Times; i++)
|
||||
{
|
||||
IntegrationPoint &ip = ir->IntPoint(i-1);
|
||||
ip.x = double(i) / Times;
|
||||
ip.y = ip.z = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
break;
|
||||
@@ -1363,17 +1364,18 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
|
||||
return NULL;
|
||||
}
|
||||
ir = FindInIntPts(Geom, ((Times-1)*(Times-2))/2);
|
||||
if (ir) { return ir; }
|
||||
|
||||
ir = new IntegrationRule(((Times-1)*(Times-2))/2);
|
||||
for (int k = 0, j = 1; j < Times-1; j++)
|
||||
for (int i = 1; i < Times-j; i++, k++)
|
||||
{
|
||||
IntegrationPoint &ip = ir->IntPoint(k);
|
||||
ip.x = double(i) / Times;
|
||||
ip.y = double(j) / Times;
|
||||
ip.z = 0.0;
|
||||
}
|
||||
if (ir == NULL)
|
||||
{
|
||||
ir = new IntegrationRule(((Times-1)*(Times-2))/2);
|
||||
for (int k = 0, j = 1; j < Times-1; j++)
|
||||
for (int i = 1; i < Times-j; i++, k++)
|
||||
{
|
||||
IntegrationPoint &ip = ir->IntPoint(k);
|
||||
ip.x = double(i) / Times;
|
||||
ip.y = double(j) / Times;
|
||||
ip.z = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
break;
|
||||
|
||||
@@ -1384,17 +1386,18 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
|
||||
return NULL;
|
||||
}
|
||||
ir = FindInIntPts(Geom, (Times-1)*(Times-1));
|
||||
if (ir) { return ir; }
|
||||
|
||||
ir = new IntegrationRule((Times-1)*(Times-1));
|
||||
for (int k = 0, j = 1; j < Times; j++)
|
||||
for (int i = 1; i < Times; i++, k++)
|
||||
{
|
||||
IntegrationPoint &ip = ir->IntPoint(k);
|
||||
ip.x = double(i) / Times;
|
||||
ip.y = double(j) / Times;
|
||||
ip.z = 0.0;
|
||||
}
|
||||
if (ir == NULL)
|
||||
{
|
||||
ir = new IntegrationRule((Times-1)*(Times-1));
|
||||
for (int k = 0, j = 1; j < Times; j++)
|
||||
for (int i = 1; i < Times; i++, k++)
|
||||
{
|
||||
IntegrationPoint &ip = ir->IntPoint(k);
|
||||
ip.x = double(i) / Times;
|
||||
ip.y = double(j) / Times;
|
||||
ip.z = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
break;
|
||||
|
||||
@@ -1402,121 +1405,10 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
|
||||
mfem_error("GeometryRefiner::RefineInterior(...)");
|
||||
}
|
||||
|
||||
MFEM_ASSERT(ir != NULL, "Failed to construct the refined IntegrationRule.");
|
||||
IntPts[Geom].Append(ir);
|
||||
|
||||
if (ir) { IntPts[Geom].Append(ir); }
|
||||
return ir;
|
||||
}
|
||||
|
||||
|
||||
int GeometryRefiner::GetRefinementLevelFromPoints(Geometry::Type geom, int Npts)
|
||||
{
|
||||
switch (geom)
|
||||
{
|
||||
case Geometry::POINT:
|
||||
{
|
||||
return -1;
|
||||
}
|
||||
case Geometry::SEGMENT:
|
||||
{
|
||||
return Npts -1;
|
||||
}
|
||||
case Geometry::TRIANGLE:
|
||||
{
|
||||
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
|
||||
{
|
||||
np = (n+1)*(n+2)/2;
|
||||
if (np == Npts) { return n; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
case Geometry::SQUARE:
|
||||
{
|
||||
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
|
||||
{
|
||||
np = (n+1)*(n+1);
|
||||
if (np == Npts) { return n; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
case Geometry::CUBE:
|
||||
{
|
||||
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
|
||||
{
|
||||
np = (n+1)*(n+1)*(n+1);
|
||||
if (np == Npts) { return n; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
case Geometry::TETRAHEDRON:
|
||||
{
|
||||
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
|
||||
{
|
||||
np = (n+3)*(n+2)*(n+1)/6;
|
||||
if (np == Npts) { return n; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
case Geometry::PRISM:
|
||||
{
|
||||
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
|
||||
{
|
||||
np = (n+1)*(n+1)*(n+2)/2;
|
||||
if (np == Npts) { return n; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
default:
|
||||
{
|
||||
mfem_error("Non existing Geometry.");
|
||||
}
|
||||
}
|
||||
|
||||
return -1;
|
||||
}
|
||||
|
||||
|
||||
int GeometryRefiner::GetRefinementLevelFromElems(Geometry::Type geom, int Nels)
|
||||
{
|
||||
switch (geom)
|
||||
{
|
||||
case Geometry::POINT:
|
||||
{
|
||||
return -1;
|
||||
}
|
||||
case Geometry::SEGMENT:
|
||||
{
|
||||
return Nels;
|
||||
}
|
||||
case Geometry::TRIANGLE:
|
||||
case Geometry::SQUARE:
|
||||
{
|
||||
for (int n = 0; (n < 15) && (n*n < Nels+1) ; n++)
|
||||
{
|
||||
if (n*n == Nels) { return n-1; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
case Geometry::CUBE:
|
||||
case Geometry::TETRAHEDRON:
|
||||
case Geometry::PRISM:
|
||||
{
|
||||
for (int n = 0; (n < 15) && (n*n*n < Nels+1) ; n++)
|
||||
{
|
||||
if (n*n*n == Nels) { return n-1; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
default:
|
||||
{
|
||||
mfem_error("Non existing Geometry.");
|
||||
}
|
||||
}
|
||||
|
||||
return -1;
|
||||
}
|
||||
|
||||
|
||||
GeometryRefiner GlobGeometryRefiner;
|
||||
|
||||
}
|
||||
|
||||
@@ -273,12 +273,6 @@ public:
|
||||
/// @note This method always uses Quadrature1D::OpenUniform points.
|
||||
const IntegrationRule *RefineInterior(Geometry::Type Geom, int Times);
|
||||
|
||||
/// Get the Refinement level based on number of points
|
||||
virtual int GetRefinementLevelFromPoints(Geometry::Type Geom, int Npts);
|
||||
|
||||
/// Get the Refinement level based on number of elements
|
||||
virtual int GetRefinementLevelFromElems(Geometry::Type geom, int Npts);
|
||||
|
||||
~GeometryRefiner();
|
||||
};
|
||||
|
||||
|
||||
+98
-321
@@ -199,7 +199,8 @@ void GridFunction::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
if (f != fes) { Destroy(); }
|
||||
fes = f;
|
||||
v.UseDevice(true);
|
||||
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
|
||||
NewMemoryAndSize(Memory<double>(v.GetMemory(), v_offset, fes->GetVSize()),
|
||||
fes->GetVSize(), true);
|
||||
sequence = fes->GetSequence();
|
||||
}
|
||||
|
||||
@@ -396,16 +397,8 @@ const
|
||||
fes->DofsToVDofs(vdim-1, dofs);
|
||||
Vector DofVal(dofs.Size()), LocVec;
|
||||
const FiniteElement *fe = fes->GetFE(i);
|
||||
if (fe->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
fe->CalcShape(ip, DofVal);
|
||||
}
|
||||
else
|
||||
{
|
||||
ElementTransformation *Tr = fes->GetElementTransformation(i);
|
||||
Tr->SetIntPoint(&ip);
|
||||
fe->CalcPhysShape(*Tr, DofVal);
|
||||
}
|
||||
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE, "invalid FE map type");
|
||||
fe->CalcShape(ip, DofVal);
|
||||
GetSubVector(dofs, LocVec);
|
||||
|
||||
return (DofVal * LocVec);
|
||||
@@ -422,17 +415,10 @@ void GridFunction::GetVectorValue(int i, const IntegrationPoint &ip,
|
||||
GetSubVector(vdofs, loc_data);
|
||||
if (FElem->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
MFEM_ASSERT(FElem->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
Vector shape(dof);
|
||||
if (FElem->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
FElem->CalcShape(ip, shape);
|
||||
}
|
||||
else
|
||||
{
|
||||
ElementTransformation *Tr = fes->GetElementTransformation(i);
|
||||
Tr->SetIntPoint(&ip);
|
||||
FElem->CalcPhysShape(*Tr, shape);
|
||||
}
|
||||
FElem->CalcShape(ip, shape);
|
||||
int vdim = fes->GetVDim();
|
||||
val.SetSize(vdim);
|
||||
for (int k = 0; k < vdim; k++)
|
||||
@@ -766,21 +752,19 @@ double GridFunction::GetValue(ElementTransformation &T,
|
||||
IntegrationPoint fip;
|
||||
be_to_bfe(FET->GetGeometryType(), o, ip, fip);
|
||||
|
||||
// Compute and set the point in element 1 from fip
|
||||
FET->SetAllIntPoints(&fip);
|
||||
FET->SetIntPoint(&fip);
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
return GetValue(T1, T1.GetIntPoint(), comp);
|
||||
}
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_FACE:
|
||||
{
|
||||
FaceElementTransformations * FET =
|
||||
dynamic_cast<FaceElementTransformations *>(&T);
|
||||
|
||||
// Evaluate in neighboring element for both continuous and
|
||||
// discontinuous fields (the integration point in T1 should have
|
||||
// already been set).
|
||||
// discontinuous fields.
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
return GetValue(T1, T1.GetIntPoint(), comp);
|
||||
}
|
||||
@@ -904,21 +888,19 @@ void GridFunction::GetVectorValue(ElementTransformation &T,
|
||||
IntegrationPoint fip;
|
||||
be_to_bfe(FET->GetGeometryType(), o, ip, fip);
|
||||
|
||||
// Compute and set the point in element 1 from fip
|
||||
FET->SetAllIntPoints(&fip);
|
||||
FET->SetIntPoint(&fip);
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
return GetVectorValue(T1, T1.GetIntPoint(), val);
|
||||
}
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_FACE:
|
||||
{
|
||||
FaceElementTransformations * FET =
|
||||
dynamic_cast<FaceElementTransformations *>(&T);
|
||||
|
||||
// Evaluate in neighboring element for both continuous and
|
||||
// discontinuous fields (the integration point in T1 should have
|
||||
// already been set).
|
||||
// discontinuous fields.
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
return GetVectorValue(T1, T1.GetIntPoint(), val);
|
||||
}
|
||||
@@ -1356,262 +1338,107 @@ void GridFunction::GetVectorGradientHat(
|
||||
MultAtB(loc_data_mat, dshape, gh);
|
||||
}
|
||||
|
||||
double GridFunction::GetDivergence(ElementTransformation &T) const
|
||||
double GridFunction::GetDivergence(ElementTransformation &tr) const
|
||||
{
|
||||
switch (T.ElementType)
|
||||
double div_v;
|
||||
int elNo = tr.ElementNo;
|
||||
const FiniteElement *FElem = fes->GetFE(elNo);
|
||||
if (FElem->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
case ElementTransformation::ELEMENT:
|
||||
MFEM_ASSERT(FElem->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
DenseMatrix grad_hat;
|
||||
GetVectorGradientHat(tr, grad_hat);
|
||||
const DenseMatrix &Jinv = tr.InverseJacobian();
|
||||
div_v = 0.0;
|
||||
for (int i = 0; i < Jinv.Width(); i++)
|
||||
{
|
||||
int elNo = T.ElementNo;
|
||||
const FiniteElement *fe = fes->GetFE(elNo);
|
||||
if (fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
for (int j = 0; j < Jinv.Height(); j++)
|
||||
{
|
||||
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
DenseMatrix grad_hat;
|
||||
GetVectorGradientHat(T, grad_hat);
|
||||
const DenseMatrix &Jinv = T.InverseJacobian();
|
||||
double div_v = 0.0;
|
||||
for (int i = 0; i < Jinv.Width(); i++)
|
||||
{
|
||||
for (int j = 0; j < Jinv.Height(); j++)
|
||||
{
|
||||
div_v += grad_hat(i, j) * Jinv(j, i);
|
||||
}
|
||||
}
|
||||
return div_v;
|
||||
div_v += grad_hat(i, j) * Jinv(j, i);
|
||||
}
|
||||
else
|
||||
{
|
||||
// Assuming RT-type space
|
||||
Array<int> dofs;
|
||||
fes->GetElementDofs(elNo, dofs);
|
||||
Vector loc_data, divshape(fe->GetDof());
|
||||
GetSubVector(dofs, loc_data);
|
||||
fe->CalcDivShape(T.GetIntPoint(), divshape);
|
||||
return (loc_data * divshape) / T.Weight();
|
||||
}
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_ELEMENT:
|
||||
{
|
||||
// In order to properly capture the derivative of the normal component
|
||||
// of the field (as well as the transverse divergence of the
|
||||
// tangential compoents) we must evaluate it in the neighboring
|
||||
// element.
|
||||
FaceElementTransformations * FET =
|
||||
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
|
||||
|
||||
// Boundary elements and Boundary Faces may have different
|
||||
// orientations so adjust the integration point if necessary.
|
||||
int o = 0;
|
||||
if (fes->GetMesh()->Dimension() == 3)
|
||||
{
|
||||
int f;
|
||||
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
|
||||
}
|
||||
|
||||
IntegrationPoint fip;
|
||||
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
|
||||
|
||||
// Compute and set the point in element 1 from fip
|
||||
FET->SetAllIntPoints(&fip);
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
|
||||
return GetDivergence(T1);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_FACE:
|
||||
{
|
||||
// This must be a DG context so this dynamic cast must succeed.
|
||||
FaceElementTransformations * FET =
|
||||
dynamic_cast<FaceElementTransformations *>(&T);
|
||||
|
||||
// Evaluate in neighboring element (the integration point in T1 should
|
||||
// have already been set).
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
return GetDivergence(T1);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
{
|
||||
MFEM_ABORT("GridFunction::GetDivergence: Unsupported element type \""
|
||||
<< T.ElementType << "\"");
|
||||
}
|
||||
}
|
||||
return 0.0; // never reached
|
||||
else
|
||||
{
|
||||
// Assuming RT-type space
|
||||
Array<int> dofs;
|
||||
fes->GetElementDofs(elNo, dofs);
|
||||
Vector loc_data, divshape(FElem->GetDof());
|
||||
GetSubVector(dofs, loc_data);
|
||||
FElem->CalcDivShape(tr.GetIntPoint(), divshape);
|
||||
div_v = (loc_data * divshape) / tr.Weight();
|
||||
}
|
||||
return div_v;
|
||||
}
|
||||
|
||||
void GridFunction::GetCurl(ElementTransformation &T, Vector &curl) const
|
||||
void GridFunction::GetCurl(ElementTransformation &tr, Vector &curl) const
|
||||
{
|
||||
switch (T.ElementType)
|
||||
int elNo = tr.ElementNo;
|
||||
const FiniteElement *FElem = fes->GetFE(elNo);
|
||||
if (FElem->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
case ElementTransformation::ELEMENT:
|
||||
MFEM_ASSERT(FElem->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
DenseMatrix grad_hat;
|
||||
GetVectorGradientHat(tr, grad_hat);
|
||||
const DenseMatrix &Jinv = tr.InverseJacobian();
|
||||
DenseMatrix grad(grad_hat.Height(), Jinv.Width()); // vdim x FElem->Dim
|
||||
Mult(grad_hat, Jinv, grad);
|
||||
MFEM_ASSERT(grad.Height() == grad.Width(), "");
|
||||
if (grad.Height() == 3)
|
||||
{
|
||||
int elNo = T.ElementNo;
|
||||
const FiniteElement *fe = fes->GetFE(elNo);
|
||||
if (fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
DenseMatrix grad_hat;
|
||||
GetVectorGradientHat(T, grad_hat);
|
||||
const DenseMatrix &Jinv = T.InverseJacobian();
|
||||
// Dimensions of grad are vdim x FElem->Dim
|
||||
DenseMatrix grad(grad_hat.Height(), Jinv.Width());
|
||||
Mult(grad_hat, Jinv, grad);
|
||||
MFEM_ASSERT(grad.Height() == grad.Width(), "");
|
||||
if (grad.Height() == 3)
|
||||
{
|
||||
curl.SetSize(3);
|
||||
curl(0) = grad(2,1) - grad(1,2);
|
||||
curl(1) = grad(0,2) - grad(2,0);
|
||||
curl(2) = grad(1,0) - grad(0,1);
|
||||
}
|
||||
else if (grad.Height() == 2)
|
||||
{
|
||||
curl.SetSize(1);
|
||||
curl(0) = grad(1,0) - grad(0,1);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// Assuming ND-type space
|
||||
Array<int> dofs;
|
||||
fes->GetElementDofs(elNo, dofs);
|
||||
Vector loc_data;
|
||||
GetSubVector(dofs, loc_data);
|
||||
DenseMatrix curl_shape(fe->GetDof(), fe->GetDim() == 3 ? 3 : 1);
|
||||
fe->CalcCurlShape(T.GetIntPoint(), curl_shape);
|
||||
curl.SetSize(curl_shape.Width());
|
||||
if (curl_shape.Width() == 3)
|
||||
{
|
||||
double curl_hat[3];
|
||||
curl_shape.MultTranspose(loc_data, curl_hat);
|
||||
T.Jacobian().Mult(curl_hat, curl);
|
||||
}
|
||||
else
|
||||
{
|
||||
curl_shape.MultTranspose(loc_data, curl);
|
||||
}
|
||||
curl /= T.Weight();
|
||||
}
|
||||
curl.SetSize(3);
|
||||
curl(0) = grad(2,1) - grad(1,2);
|
||||
curl(1) = grad(0,2) - grad(2,0);
|
||||
curl(2) = grad(1,0) - grad(0,1);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_ELEMENT:
|
||||
else if (grad.Height() == 2)
|
||||
{
|
||||
// In order to capture the tangential components of the curl we
|
||||
// must evaluate it in the neighboring element.
|
||||
FaceElementTransformations * FET =
|
||||
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
|
||||
|
||||
// Boundary elements and Boundary Faces may have different
|
||||
// orientations so adjust the integration point if necessary.
|
||||
int o = 0;
|
||||
if (fes->GetMesh()->Dimension() == 3)
|
||||
{
|
||||
int f;
|
||||
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
|
||||
}
|
||||
|
||||
IntegrationPoint fip;
|
||||
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
|
||||
|
||||
// Compute and set the point in element 1 from fip
|
||||
FET->SetAllIntPoints(&fip);
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
|
||||
GetCurl(T1, curl);
|
||||
curl.SetSize(1);
|
||||
curl(0) = grad(1,0) - grad(0,1);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_FACE:
|
||||
}
|
||||
else
|
||||
{
|
||||
// Assuming ND-type space
|
||||
Array<int> dofs;
|
||||
fes->GetElementDofs(elNo, dofs);
|
||||
Vector loc_data;
|
||||
GetSubVector(dofs, loc_data);
|
||||
DenseMatrix curl_shape(FElem->GetDof(), FElem->GetDim() == 3 ? 3 : 1);
|
||||
FElem->CalcCurlShape(tr.GetIntPoint(), curl_shape);
|
||||
curl.SetSize(curl_shape.Width());
|
||||
if (curl_shape.Width() == 3)
|
||||
{
|
||||
// This must be a DG context so this dynamic cast must succeed.
|
||||
FaceElementTransformations * FET =
|
||||
dynamic_cast<FaceElementTransformations *>(&T);
|
||||
|
||||
// Evaluate in neighboring element (the integration point in T1 should
|
||||
// have already been set).
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
GetCurl(T1, curl);
|
||||
double curl_hat[3];
|
||||
curl_shape.MultTranspose(loc_data, curl_hat);
|
||||
tr.Jacobian().Mult(curl_hat, curl);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("GridFunction::GetCurl: Unsupported element type \""
|
||||
<< T.ElementType << "\"");
|
||||
curl_shape.MultTranspose(loc_data, curl);
|
||||
}
|
||||
curl /= tr.Weight();
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::GetGradient(ElementTransformation &T, Vector &grad) const
|
||||
void GridFunction::GetGradient(ElementTransformation &tr, Vector &grad) const
|
||||
{
|
||||
switch (T.ElementType)
|
||||
{
|
||||
case ElementTransformation::ELEMENT:
|
||||
{
|
||||
const FiniteElement * fe = fes->GetFE(T.ElementNo);
|
||||
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
int spaceDim = fes->GetMesh()->SpaceDimension();
|
||||
int dim = fe->GetDim(), dof = fe->GetDof();
|
||||
DenseMatrix dshape(dof, dim);
|
||||
Vector lval, gh(dim);
|
||||
Array<int> dofs;
|
||||
int elNo = tr.ElementNo;
|
||||
const FiniteElement *fe = fes->GetFE(elNo);
|
||||
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE, "invalid FE map type");
|
||||
int dim = fe->GetDim(), dof = fe->GetDof();
|
||||
DenseMatrix dshape(dof, dim);
|
||||
Vector lval, gh(dim);
|
||||
Array<int> dofs;
|
||||
|
||||
grad.SetSize(spaceDim);
|
||||
fes->GetElementDofs(T.ElementNo, dofs);
|
||||
GetSubVector(dofs, lval);
|
||||
fe->CalcDShape(T.GetIntPoint(), dshape);
|
||||
dshape.MultTranspose(lval, gh);
|
||||
T.InverseJacobian().MultTranspose(gh, grad);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_ELEMENT:
|
||||
{
|
||||
// In order to properly capture the normal component of the gradient
|
||||
// as well as its tangential components we must evaluate it in the
|
||||
// neighboring element.
|
||||
FaceElementTransformations * FET =
|
||||
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
|
||||
|
||||
// Boundary elements and Boundary Faces may have different
|
||||
// orientations so adjust the integration point if necessary.
|
||||
int o = 0;
|
||||
if (fes->GetMesh()->Dimension() == 3)
|
||||
{
|
||||
int f;
|
||||
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
|
||||
}
|
||||
|
||||
IntegrationPoint fip;
|
||||
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
|
||||
|
||||
// Compute and set the point in element 1 from fip
|
||||
FET->SetAllIntPoints(&fip);
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
|
||||
GetGradient(T1, grad);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_FACE:
|
||||
{
|
||||
// This must be a DG context so this dynamic cast must succeed.
|
||||
FaceElementTransformations * FET =
|
||||
dynamic_cast<FaceElementTransformations *>(&T);
|
||||
|
||||
// Evaluate in neighboring element (the integration point in T1 should
|
||||
// have already been set).
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
GetGradient(T1, grad);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
{
|
||||
MFEM_ABORT("GridFunction::GetGradient: Unsupported element type \""
|
||||
<< T.ElementType << "\"");
|
||||
}
|
||||
}
|
||||
grad.SetSize(dim);
|
||||
fes->GetElementDofs(elNo, dofs);
|
||||
GetSubVector(dofs, lval);
|
||||
fe->CalcDShape(tr.GetIntPoint(), dshape);
|
||||
dshape.MultTranspose(lval, gh);
|
||||
tr.InverseJacobian().MultTranspose(gh, grad);
|
||||
}
|
||||
|
||||
void GridFunction::GetGradients(ElementTransformation &tr,
|
||||
@@ -1640,65 +1467,15 @@ void GridFunction::GetGradients(ElementTransformation &tr,
|
||||
}
|
||||
|
||||
void GridFunction::GetVectorGradient(
|
||||
ElementTransformation &T, DenseMatrix &grad) const
|
||||
ElementTransformation &tr, DenseMatrix &grad) const
|
||||
{
|
||||
switch (T.ElementType)
|
||||
{
|
||||
case ElementTransformation::ELEMENT:
|
||||
{
|
||||
MFEM_ASSERT(fes->GetFE(T.ElementNo)->GetMapType() ==
|
||||
FiniteElement::VALUE, "invalid FE map type");
|
||||
DenseMatrix grad_hat;
|
||||
GetVectorGradientHat(T, grad_hat);
|
||||
const DenseMatrix &Jinv = T.InverseJacobian();
|
||||
grad.SetSize(grad_hat.Height(), Jinv.Width());
|
||||
Mult(grad_hat, Jinv, grad);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_ELEMENT:
|
||||
{
|
||||
// In order to capture the normal component of the gradient we
|
||||
// must evaluate it in the neighboring element.
|
||||
FaceElementTransformations * FET =
|
||||
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
|
||||
|
||||
// Boundary elements and Boundary Faces may have different
|
||||
// orientations so adjust the integration point if necessary.
|
||||
int o = 0;
|
||||
if (fes->GetMesh()->Dimension() == 3)
|
||||
{
|
||||
int f;
|
||||
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
|
||||
}
|
||||
|
||||
IntegrationPoint fip;
|
||||
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
|
||||
|
||||
// Compute and set the point in element 1 from fip
|
||||
FET->SetAllIntPoints(&fip);
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
|
||||
GetVectorGradient(T1, grad);
|
||||
}
|
||||
break;
|
||||
case ElementTransformation::BDR_FACE:
|
||||
{
|
||||
// This must be a DG context so this dynamic cast must succeed.
|
||||
FaceElementTransformations * FET =
|
||||
dynamic_cast<FaceElementTransformations *>(&T);
|
||||
|
||||
// Evaluate in neighboring element (the integration point in T1 should
|
||||
// have already been set).
|
||||
ElementTransformation & T1 = FET->GetElement1Transformation();
|
||||
GetVectorGradient(T1, grad);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
{
|
||||
MFEM_ABORT("GridFunction::GetVectorGradient: "
|
||||
"Unsupported element type \"" << T.ElementType << "\"");
|
||||
}
|
||||
}
|
||||
MFEM_ASSERT(fes->GetFE(tr.ElementNo)->GetMapType() == FiniteElement::VALUE,
|
||||
"invalid FE map type");
|
||||
DenseMatrix grad_hat;
|
||||
GetVectorGradientHat(tr, grad_hat);
|
||||
const DenseMatrix &Jinv = tr.InverseJacobian();
|
||||
grad.SetSize(grad_hat.Height(), Jinv.Width());
|
||||
Mult(grad_hat, Jinv, grad);
|
||||
}
|
||||
|
||||
void GridFunction::GetElementAverages(GridFunction &avgs) const
|
||||
|
||||
+7
-9
@@ -105,7 +105,7 @@ public:
|
||||
have the same size.
|
||||
|
||||
@note Defining this method overwrites the implicitly defined copy
|
||||
assignment operator. */
|
||||
assignemnt operator. */
|
||||
GridFunction &operator=(const GridFunction &rhs)
|
||||
{ return operator=((const Vector &)rhs); }
|
||||
|
||||
@@ -162,8 +162,7 @@ public:
|
||||
int vdim = 1) const;
|
||||
|
||||
/** Return a vector value from within the given element. */
|
||||
virtual void GetVectorValue(int i, const IntegrationPoint &ip,
|
||||
Vector &val) const;
|
||||
void GetVectorValue(int i, const IntegrationPoint &ip, Vector &val) const;
|
||||
///@}
|
||||
|
||||
/** @name Element Index Get Values Methods
|
||||
@@ -209,14 +208,13 @@ public:
|
||||
///@{
|
||||
/** Return a scalar value from within the element indicated by the
|
||||
ElementTransformation Object. */
|
||||
virtual double GetValue(ElementTransformation &T, const IntegrationPoint &ip,
|
||||
int comp = 0, Vector *tr = NULL) const;
|
||||
double GetValue(ElementTransformation &T, const IntegrationPoint &ip,
|
||||
int comp = 0, Vector *tr = NULL) const;
|
||||
|
||||
/** Return a vector value from within the element indicated by the
|
||||
ElementTransformation Object. */
|
||||
virtual void GetVectorValue(ElementTransformation &T,
|
||||
const IntegrationPoint &ip,
|
||||
Vector &val, Vector *tr = NULL) const;
|
||||
void GetVectorValue(ElementTransformation &T, const IntegrationPoint &ip,
|
||||
Vector &val, Vector *tr = NULL) const;
|
||||
///@}
|
||||
|
||||
/** @name ElementTransformation Get Values Methods
|
||||
@@ -714,7 +712,7 @@ public:
|
||||
the same size.
|
||||
|
||||
@note Defining this method overwrites the implicitly defined copy
|
||||
assignment operator. */
|
||||
assignemnt operator. */
|
||||
QuadratureFunction &operator=(const QuadratureFunction &v);
|
||||
|
||||
/// Get the IntegrationRule associated with mesh element @a idx.
|
||||
|
||||
@@ -192,7 +192,6 @@ void FindPointsGSLIB::Interpolate(Array<unsigned int> &codes,
|
||||
const int ncomp = field_in.FESpace()->GetVDim(),
|
||||
points_fld = field_in.Size() / ncomp,
|
||||
points_cnt = codes.Size();
|
||||
field_out.SetSize(points_cnt*ncomp);
|
||||
|
||||
for (int i = 0; i < ncomp; i++)
|
||||
{
|
||||
|
||||
@@ -618,26 +618,6 @@ void QuadratureFunctions1D::OpenHalfUniform(const int np, IntegrationRule* ir)
|
||||
CalculateUniformWeights(ir, Quadrature1D::OpenHalfUniform);
|
||||
}
|
||||
|
||||
void QuadratureFunctions1D::ClosedGL(const int np, IntegrationRule* ir)
|
||||
{
|
||||
ir->SetSize(np);
|
||||
ir->IntPoint(0).x = 0.0;
|
||||
ir->IntPoint(np-1).x = 1.0;
|
||||
|
||||
if ( np > 2 )
|
||||
{
|
||||
IntegrationRule gl_ir;
|
||||
GaussLegendre(np-1, &gl_ir);
|
||||
|
||||
for (int i = 1; i < np-1; ++i)
|
||||
{
|
||||
ir->IntPoint(i).x = (gl_ir.IntPoint(i-1).x + gl_ir.IntPoint(i).x)/2;
|
||||
}
|
||||
}
|
||||
|
||||
CalculateUniformWeights(ir, Quadrature1D::ClosedGL);
|
||||
}
|
||||
|
||||
void QuadratureFunctions1D::GivePolyPoints(const int np, double *pts,
|
||||
const int type)
|
||||
{
|
||||
@@ -670,11 +650,6 @@ void QuadratureFunctions1D::GivePolyPoints(const int np, double *pts,
|
||||
OpenHalfUniform(np, &ir);
|
||||
break;
|
||||
}
|
||||
case Quadrature1D::ClosedGL:
|
||||
{
|
||||
ClosedGL(np, &ir);
|
||||
break;
|
||||
}
|
||||
default:
|
||||
{
|
||||
MFEM_ABORT("Asking for an unknown type of 1D Quadrature points, "
|
||||
|
||||
+1
-3
@@ -272,7 +272,6 @@ public:
|
||||
void OpenUniform(const int np, IntegrationRule *ir);
|
||||
void ClosedUniform(const int np, IntegrationRule *ir);
|
||||
void OpenHalfUniform(const int np, IntegrationRule *ir);
|
||||
void ClosedGL(const int np, IntegrationRule *ir);
|
||||
///@}
|
||||
|
||||
/// A helper function that will play nice with Poly_1D::OpenPoints and
|
||||
@@ -294,8 +293,7 @@ public:
|
||||
GaussLobatto = 1,
|
||||
OpenUniform = 2, ///< aka open Newton-Cotes
|
||||
ClosedUniform = 3, ///< aka closed Newton-Cotes
|
||||
OpenHalfUniform = 4, ///< aka "open half" Newton-Cotes
|
||||
ClosedGL = 5 ///< aka closed Gauss Legendre
|
||||
OpenHalfUniform = 4 ///< aka "open half" Newton-Cotes
|
||||
};
|
||||
/** @brief If the Quadrature1D type is not closed return Invalid; otherwise
|
||||
return type. */
|
||||
|
||||
+19
-38
@@ -97,8 +97,6 @@ static void InitCeedNonTensorBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
Vector qweight(Q);
|
||||
Vector shape_i(P);
|
||||
DenseMatrix grad_i(P, dim);
|
||||
|
||||
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
|
||||
const Table &el_dof = fes.GetElementToDofTable();
|
||||
Array<int> tp_el_dof(el_dof.Size_of_connections());
|
||||
const TensorBasisElement * tfe =
|
||||
@@ -130,15 +128,7 @@ static void InitCeedNonTensorBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
const int el_offset = fe->GetDof() * i;
|
||||
for (int j = 0; j < fe->GetDof(); j++)
|
||||
{
|
||||
if (compstride == 1)
|
||||
{
|
||||
tp_el_dof[j + el_offset] = fes.GetVDim()*
|
||||
el_dof.GetJ()[dof_map[j] + el_offset];
|
||||
}
|
||||
else
|
||||
{
|
||||
tp_el_dof[j + el_offset] = el_dof.GetJ()[dof_map[j] + el_offset];
|
||||
}
|
||||
tp_el_dof[j + el_offset] = el_dof.GetJ()[dof_map[j] + el_offset];
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -167,23 +157,20 @@ static void InitCeedNonTensorBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
{
|
||||
for (int i = 0; i < P; i++)
|
||||
{
|
||||
if (compstride == 1)
|
||||
{
|
||||
tp_el_dof[i + e*P] = fes.GetVDim()*el_dof.GetJ()[i + e*P];
|
||||
}
|
||||
else
|
||||
{
|
||||
tp_el_dof[i + e*P] = el_dof.GetJ()[i + e*P];
|
||||
}
|
||||
tp_el_dof[i + e*P] = el_dof.GetJ()[i + e*P];
|
||||
}
|
||||
}
|
||||
}
|
||||
CeedBasisCreateH1(ceed, GetCeedTopology(fe->GetGeomType()), fes.GetVDim(),
|
||||
fe->GetDof(), ir.GetNPoints(), shape.GetData(),
|
||||
grad.GetData(), qref.GetData(), qweight.GetData(), basis);
|
||||
CeedElemRestrictionCreate(ceed, mesh->GetNE(), fe->GetDof(), fes.GetVDim(),
|
||||
compstride, (fes.GetVDim())*(fes.GetNDofs()),
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
CeedInterlaceMode imode = CEED_NONINTERLACED;
|
||||
if (fes.GetOrdering()==Ordering::byVDIM)
|
||||
{
|
||||
imode = CEED_INTERLACED;
|
||||
}
|
||||
CeedElemRestrictionCreate(ceed, imode, mesh->GetNE(), fe->GetDof(),
|
||||
fes.GetNDofs(), fes.GetVDim(), CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
@@ -228,7 +215,6 @@ static void InitCeedTensorBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
grad1d.GetData(), qref1d.GetData(),
|
||||
qweight1d.GetData(), basis);
|
||||
|
||||
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
|
||||
const Table &el_dof = fes.GetElementToDofTable();
|
||||
Array<int> tp_el_dof(el_dof.Size_of_connections());
|
||||
for (int i = 0; i < mesh->GetNE(); i++)
|
||||
@@ -236,20 +222,16 @@ static void InitCeedTensorBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
const int el_offset = fe->GetDof() * i;
|
||||
for (int j = 0; j < fe->GetDof(); j++)
|
||||
{
|
||||
if (compstride == 1)
|
||||
{
|
||||
tp_el_dof[j + el_offset] = fes.GetVDim()*
|
||||
el_dof.GetJ()[dof_map[j] + el_offset];
|
||||
}
|
||||
else
|
||||
{
|
||||
tp_el_dof[j + el_offset] = el_dof.GetJ()[dof_map[j] + el_offset];
|
||||
}
|
||||
tp_el_dof[j + el_offset] = el_dof.GetJ()[dof_map[j] + el_offset];
|
||||
}
|
||||
}
|
||||
CeedElemRestrictionCreate(ceed, mesh->GetNE(), fe->GetDof(), fes.GetVDim(),
|
||||
compstride, (fes.GetVDim())*(fes.GetNDofs()),
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
CeedInterlaceMode imode = CEED_NONINTERLACED;
|
||||
if (fes.GetOrdering()==Ordering::byVDIM)
|
||||
{
|
||||
imode = CEED_INTERLACED;
|
||||
}
|
||||
CeedElemRestrictionCreate(ceed, imode, mesh->GetNE(), fe->GetDof(),
|
||||
fes.GetNDofs(), fes.GetVDim(), CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
@@ -316,9 +298,8 @@ void CeedPAAssemble(const CeedPAOperator& op,
|
||||
CeedBasisGetNumQuadraturePoints(ceedData.basis, &nqpts);
|
||||
|
||||
const int qdatasize = op.qdatasize;
|
||||
CeedElemRestrictionCreateStrided(ceed, nelem, nqpts, qdatasize,
|
||||
nelem*nqpts*qdatasize, CEED_STRIDES_BACKEND,
|
||||
&ceedData.restr_i);
|
||||
CeedElemRestrictionCreateStrided(ceed, nelem, nqpts, nelem*nqpts, qdatasize,
|
||||
CEED_STRIDES_BACKEND, &ceedData.restr_i);
|
||||
|
||||
CeedVectorCreate(ceed, mesh->GetNodes()->Size(), &ceedData.node_coords);
|
||||
CeedVectorSetArray(ceedData.node_coords, CEED_MEM_HOST, CEED_USE_POINTER,
|
||||
|
||||
+1
-10
@@ -199,19 +199,10 @@ void LinearForm::Assemble()
|
||||
void LinearForm::Update(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
{
|
||||
fes = f;
|
||||
NewMemoryAndSize(Memory<double>(v.GetMemory(), v_offset, f->GetVSize()),
|
||||
f->GetVSize(), false);
|
||||
NewDataAndSize((double *)v + v_offset, fes->GetVSize());
|
||||
ResetDeltaLocations();
|
||||
}
|
||||
|
||||
void LinearForm::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
{
|
||||
MFEM_ASSERT(v.Size() >= v_offset + f->GetVSize(), "");
|
||||
fes = f;
|
||||
v.UseDevice(true);
|
||||
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
|
||||
}
|
||||
|
||||
void LinearForm::AssembleDelta()
|
||||
{
|
||||
if (dlfi_delta.Size() == 0) { return; }
|
||||
|
||||
+1
-10
@@ -26,7 +26,7 @@ protected:
|
||||
/// FE space on which the LinearForm lives. Not owned.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
/** @brief Indicates the LinearFormIntegrator%s stored in #dlfi, #dlfi_delta,
|
||||
/** @brief Indicates the LinerFormIntegrator%s stored in #dlfi, #dlfi_delta,
|
||||
#blfi, and #flfi are owned by another LinearForm. */
|
||||
int extern_lfs;
|
||||
|
||||
@@ -175,15 +175,6 @@ public:
|
||||
@note This method does not perform assembly. */
|
||||
void Update(FiniteElementSpace *f, Vector &v, int v_offset);
|
||||
|
||||
/** @brief Make the LinearForm reference external data on a new
|
||||
FiniteElementSpace. */
|
||||
/** This method changes the FiniteElementSpace associated with the LinearForm
|
||||
@a *f and sets the data of the Vector @a v (plus the @a v_offset)
|
||||
as external data in the LinearForm.
|
||||
@note This version of the method will also perform bounds checks when
|
||||
the build option MFEM_DEBUG is enabled. */
|
||||
virtual void MakeRef(FiniteElementSpace *f, Vector &v, int v_offset);
|
||||
|
||||
/// Return the action of the LinearForm as a linear mapping.
|
||||
/** Linear forms are linear functionals which map GridFunctions to
|
||||
the real numbers. This method performs this mapping which in
|
||||
|
||||
+18
-31
@@ -159,13 +159,10 @@ void BoundaryLFIntegrator::AssembleRHSElementVect(
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
IntegrationPoint eip;
|
||||
Tr.Loc1.Transform(ip, eip);
|
||||
|
||||
// Set the integration point in the face and the neighboring element
|
||||
Tr.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring element's integration point
|
||||
const IntegrationPoint &eip = Tr.GetElement1IntPoint();
|
||||
|
||||
Tr.Face->SetIntPoint (&ip);
|
||||
double val = Tr.Face->Weight() * ip.weight * Q.Eval(*Tr.Face, ip);
|
||||
|
||||
el.CalcShape(eip, shape);
|
||||
@@ -362,12 +359,10 @@ void VectorBoundaryLFIntegrator::AssembleRHSElementVect(
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
IntegrationPoint eip;
|
||||
Tr.Loc1.Transform(ip, eip);
|
||||
|
||||
// Set the integration point in the face and the neighboring element
|
||||
Tr.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring element's integration point
|
||||
const IntegrationPoint &eip = Tr.GetElement1IntPoint();
|
||||
Tr.SetIntPoint(&ip);
|
||||
|
||||
// Use Tr transformation in case Q depends on boundary attribute
|
||||
Q.Eval(vec, Tr, ip);
|
||||
@@ -688,14 +683,12 @@ void BoundaryFlowIntegrator::AssembleRHSElementVect(
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
|
||||
// Set the integration point in the face and the neighboring element
|
||||
Tr.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring element's integration point
|
||||
const IntegrationPoint &eip = Tr.GetElement1IntPoint();
|
||||
IntegrationPoint eip;
|
||||
Tr.Loc1.Transform(ip, eip);
|
||||
el.CalcShape(eip, shape);
|
||||
|
||||
Tr.SetIntPoint(&ip);
|
||||
|
||||
// Use Tr.Elem1 transformation for u so that it matches the coefficient
|
||||
// used with the ConvectionIntegrator and/or the DGTraceIntegrator.
|
||||
u->Eval(vu, *Tr.Elem1, eip);
|
||||
@@ -759,13 +752,10 @@ void DGDirichletLFIntegrator::AssembleRHSElementVect(
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
IntegrationPoint eip;
|
||||
|
||||
// Set the integration point in the face and the neighboring element
|
||||
Tr.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring element's integration point
|
||||
const IntegrationPoint &eip = Tr.GetElement1IntPoint();
|
||||
|
||||
Tr.Loc1.Transform(ip, eip);
|
||||
Tr.SetIntPoint(&ip);
|
||||
if (dim == 1)
|
||||
{
|
||||
nor(0) = 2*eip.x - 1.0;
|
||||
@@ -784,14 +774,14 @@ void DGDirichletLFIntegrator::AssembleRHSElementVect(
|
||||
{
|
||||
if (Q)
|
||||
{
|
||||
w *= Q->Eval(*Tr.Elem1, eip);
|
||||
w *= Q->Eval(Tr, ip);
|
||||
}
|
||||
ni.Set(w, nor);
|
||||
}
|
||||
else
|
||||
{
|
||||
nh.Set(w, nor);
|
||||
MQ->Eval(mq, *Tr.Elem1, eip);
|
||||
MQ->Eval(mq, Tr, ip);
|
||||
mq.MultTranspose(nh, ni);
|
||||
}
|
||||
CalcAdjugate(Tr.Elem1->Jacobian(), adjJ);
|
||||
@@ -855,12 +845,9 @@ void DGElasticityDirichletLFIntegrator::AssembleRHSElementVect(
|
||||
for (int pi = 0; pi < ir->GetNPoints(); ++pi)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(pi);
|
||||
|
||||
// Set the integration point in the face and the neighboring element
|
||||
Tr.SetAllIntPoints(&ip);
|
||||
|
||||
// Access the neighboring element's integration point
|
||||
const IntegrationPoint &eip = Tr.GetElement1IntPoint();
|
||||
IntegrationPoint eip;
|
||||
Tr.Loc1.Transform(ip, eip);
|
||||
Tr.SetIntPoint(&ip);
|
||||
|
||||
// Evaluate the Dirichlet b.c. using the face transformation.
|
||||
uD.Eval(u_dir, Tr, ip);
|
||||
|
||||
+4
-11
@@ -135,18 +135,11 @@ void Multigrid::SetOperator(const Operator& op)
|
||||
MFEM_ABORT("SetOperator not supported in Multigrid");
|
||||
}
|
||||
|
||||
void Multigrid::SmoothingStep(int level, bool transpose) const
|
||||
void Multigrid::SmoothingStep(int level) const
|
||||
{
|
||||
GetOperatorAtLevel(level)->Mult(*Y[level], *R[level]); // r = A x
|
||||
subtract(*X[level], *R[level], *R[level]); // r = b - A x
|
||||
if (transpose)
|
||||
{
|
||||
GetSmootherAtLevel(level)->MultTranspose(*R[level], *Z[level]); // z = S r
|
||||
}
|
||||
else
|
||||
{
|
||||
GetSmootherAtLevel(level)->Mult(*R[level], *Z[level]); // z = S r
|
||||
}
|
||||
GetSmootherAtLevel(level)->Mult(*R[level], *Z[level]); // z = S r
|
||||
add(*Y[level], 1.0, *Z[level], *Y[level]); // x = x + S (b - A x)
|
||||
}
|
||||
|
||||
@@ -160,7 +153,7 @@ void Multigrid::Cycle(int level) const
|
||||
|
||||
for (int i = 0; i < preSmoothingSteps; i++)
|
||||
{
|
||||
SmoothingStep(level, false);
|
||||
SmoothingStep(level);
|
||||
}
|
||||
|
||||
// Compute residual
|
||||
@@ -194,7 +187,7 @@ void Multigrid::Cycle(int level) const
|
||||
// Post-smooth
|
||||
for (int i = 0; i < postSmoothingSteps; i++)
|
||||
{
|
||||
SmoothingStep(level, true);
|
||||
SmoothingStep(level);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+1
-1
@@ -108,7 +108,7 @@ public:
|
||||
|
||||
private:
|
||||
/// Application of a smoothing step at particular level
|
||||
void SmoothingStep(int level, bool transpose) const;
|
||||
void SmoothingStep(int level) const;
|
||||
|
||||
/// Application of a cycle at particular level
|
||||
void Cycle(int level) const;
|
||||
|
||||
+11
-11
@@ -933,17 +933,6 @@ Operator &BlockNonlinearForm::GetGradientBlocked(const BlockVector &bx) const
|
||||
}
|
||||
}
|
||||
|
||||
if (!Grads(0,0)->Finalized())
|
||||
{
|
||||
for (int i=0; i<fes.Size(); ++i)
|
||||
{
|
||||
for (int j=0; j<fes.Size(); ++j)
|
||||
{
|
||||
Grads(i,j)->Finalize(skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
for (int i = 0; i < ess_vdofs[s]->Size(); ++i)
|
||||
@@ -963,6 +952,17 @@ Operator &BlockNonlinearForm::GetGradientBlocked(const BlockVector &bx) const
|
||||
}
|
||||
}
|
||||
|
||||
if (!Grads(0,0)->Finalized())
|
||||
{
|
||||
for (int i=0; i<fes.Size(); ++i)
|
||||
{
|
||||
for (int j=0; j<fes.Size(); ++j)
|
||||
{
|
||||
Grads(i,j)->Finalize(skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int i=0; i<fes.Size(); ++i)
|
||||
{
|
||||
for (int j=0; j<fes.Size(); ++j)
|
||||
|
||||
@@ -198,9 +198,8 @@ void ParBilinearForm::AssembleSharedFaces(int skip_zeros)
|
||||
for (int i = 0; i < nfaces; i++)
|
||||
{
|
||||
T = pmesh->GetSharedFaceTransformations(i);
|
||||
int Elem2NbrNo = T->Elem2No - pmesh->GetNE();
|
||||
pfes->GetElementVDofs(T->Elem1No, vdofs1);
|
||||
pfes->GetFaceNbrElementVDofs(Elem2NbrNo, vdofs2);
|
||||
pfes->GetFaceNbrElementVDofs(T->Elem2No, vdofs2);
|
||||
vdofs1.Copy(vdofs_all);
|
||||
for (int j = 0; j < vdofs2.Size(); j++)
|
||||
{
|
||||
@@ -217,7 +216,7 @@ void ParBilinearForm::AssembleSharedFaces(int skip_zeros)
|
||||
for (int k = 0; k < fbfi.Size(); k++)
|
||||
{
|
||||
fbfi[k]->AssembleFaceMatrix(*pfes->GetFE(T->Elem1No),
|
||||
*pfes->GetFaceNbrFE(Elem2NbrNo),
|
||||
*pfes->GetFaceNbrFE(T->Elem2No),
|
||||
*T, elemmat);
|
||||
if (keep_nbr_block)
|
||||
{
|
||||
@@ -241,7 +240,7 @@ void ParBilinearForm::Assemble(int skip_zeros)
|
||||
|
||||
BilinearForm::Assemble(skip_zeros);
|
||||
|
||||
if (!ext && fbfi.Size() > 0)
|
||||
if (fbfi.Size() > 0)
|
||||
{
|
||||
AssembleSharedFaces(skip_zeros);
|
||||
}
|
||||
|
||||
@@ -347,8 +347,6 @@ public:
|
||||
const FiniteElement *GetFaceNbrFE(int i) const;
|
||||
const FiniteElement *GetFaceNbrFaceFE(int i) const;
|
||||
const HYPRE_Int *GetFaceNbrGlobalDofMap() { return face_nbr_glob_dof_map; }
|
||||
ElementTransformation *GetFaceNbrElementTransformation(int i) const
|
||||
{ return pmesh->GetFaceNbrElementTransformation(i); }
|
||||
|
||||
void Lose_Dof_TrueDof_Matrix();
|
||||
void LoseDofOffsets() { dof_offsets.LoseData(); }
|
||||
|
||||
+5
-179
@@ -271,7 +271,6 @@ const
|
||||
{
|
||||
int fes_vdim = pfes->GetVDim();
|
||||
pfes->GetFaceNbrElementVDofs(nbr_el_no, dofs);
|
||||
const FiniteElement *fe = pfes->GetFaceNbrFE(nbr_el_no);
|
||||
if (fes_vdim > 1)
|
||||
{
|
||||
int s = dofs.Size()/fes_vdim;
|
||||
@@ -284,17 +283,7 @@ const
|
||||
face_nbr_data.GetSubVector(dofs, LocVec);
|
||||
DofVal.SetSize(dofs.Size());
|
||||
}
|
||||
if (fe->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
fe->CalcShape(ip, DofVal);
|
||||
}
|
||||
else
|
||||
{
|
||||
ElementTransformation *Tr =
|
||||
pfes->GetFaceNbrElementTransformation(nbr_el_no);
|
||||
Tr->SetIntPoint(&ip);
|
||||
fe->CalcPhysShape(*Tr, DofVal);
|
||||
}
|
||||
pfes->GetFaceNbrFE(nbr_el_no)->CalcShape(ip, DofVal);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -302,175 +291,14 @@ const
|
||||
fes->DofsToVDofs(vdim-1, dofs);
|
||||
DofVal.SetSize(dofs.Size());
|
||||
const FiniteElement *fe = fes->GetFE(i);
|
||||
if (fe->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
fe->CalcShape(ip, DofVal);
|
||||
}
|
||||
else
|
||||
{
|
||||
ElementTransformation *Tr = fes->GetElementTransformation(i);
|
||||
Tr->SetIntPoint(&ip);
|
||||
fe->CalcPhysShape(*Tr, DofVal);
|
||||
}
|
||||
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE, "invalid FE map type");
|
||||
fe->CalcShape(ip, DofVal);
|
||||
GetSubVector(dofs, LocVec);
|
||||
}
|
||||
|
||||
return (DofVal * LocVec);
|
||||
}
|
||||
|
||||
void ParGridFunction::GetVectorValue(int i, const IntegrationPoint &ip,
|
||||
Vector &val) const
|
||||
{
|
||||
int nbr_el_no = i - pfes->GetParMesh()->GetNE();
|
||||
if (nbr_el_no >= 0)
|
||||
{
|
||||
Array<int> dofs;
|
||||
pfes->GetFaceNbrElementVDofs(nbr_el_no, dofs);
|
||||
Vector loc_data;
|
||||
face_nbr_data.GetSubVector(dofs, loc_data);
|
||||
const FiniteElement *FElem = pfes->GetFaceNbrFE(nbr_el_no);
|
||||
int dof = FElem->GetDof();
|
||||
if (FElem->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
Vector shape(dof);
|
||||
if (FElem->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
FElem->CalcShape(ip, shape);
|
||||
}
|
||||
else
|
||||
{
|
||||
ElementTransformation *Tr =
|
||||
pfes->GetParMesh()->GetFaceNbrElementTransformation(nbr_el_no);
|
||||
Tr->SetIntPoint(&ip);
|
||||
FElem->CalcPhysShape(*Tr, shape);
|
||||
}
|
||||
int vdim = fes->GetVDim();
|
||||
val.SetSize(vdim);
|
||||
for (int k = 0; k < vdim; k++)
|
||||
{
|
||||
val(k) = shape * ((const double *)loc_data + dof * k);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
int spaceDim = fes->GetMesh()->SpaceDimension();
|
||||
DenseMatrix vshape(dof, spaceDim);
|
||||
ElementTransformation *Tr =
|
||||
pfes->GetParMesh()->GetFaceNbrElementTransformation(nbr_el_no);
|
||||
Tr->SetIntPoint(&ip);
|
||||
FElem->CalcVShape(*Tr, vshape);
|
||||
val.SetSize(spaceDim);
|
||||
vshape.MultTranspose(loc_data, val);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
GridFunction::GetVectorValue(i, ip, val);
|
||||
}
|
||||
}
|
||||
|
||||
double ParGridFunction::GetValue(ElementTransformation &T,
|
||||
const IntegrationPoint &ip,
|
||||
int comp, Vector *tr) const
|
||||
{
|
||||
// We can assume faces and edges are local
|
||||
if (T.ElementType != ElementTransformation::ELEMENT)
|
||||
{
|
||||
return GridFunction::GetValue(T, ip, comp, tr);
|
||||
}
|
||||
|
||||
// Check for evaluation in a local element
|
||||
int nbr_el_no = T.ElementNo - pfes->GetParMesh()->GetNE();
|
||||
if (nbr_el_no < 0)
|
||||
{
|
||||
return GridFunction::GetValue(T, ip, comp, tr);
|
||||
}
|
||||
|
||||
// Evaluate using DoFs from a neighboring element
|
||||
if (tr)
|
||||
{
|
||||
T.SetIntPoint(&ip);
|
||||
T.Transform(ip, *tr);
|
||||
}
|
||||
|
||||
Array<int> dofs;
|
||||
const FiniteElement * fe = pfes->GetFaceNbrFE(nbr_el_no);
|
||||
pfes->GetFaceNbrElementVDofs(nbr_el_no, dofs);
|
||||
|
||||
pfes->DofsToVDofs(comp-1, dofs);
|
||||
Vector DofVal(dofs.Size()), LocVec;
|
||||
if (fe->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
fe->CalcShape(ip, DofVal);
|
||||
}
|
||||
else
|
||||
{
|
||||
fe->CalcPhysShape(T, DofVal);
|
||||
}
|
||||
face_nbr_data.GetSubVector(dofs, LocVec);
|
||||
|
||||
return (DofVal * LocVec);
|
||||
}
|
||||
|
||||
void ParGridFunction::GetVectorValue(ElementTransformation &T,
|
||||
const IntegrationPoint &ip,
|
||||
Vector &val, Vector *tr) const
|
||||
{
|
||||
// We can assume faces and edges are local
|
||||
if (T.ElementType != ElementTransformation::ELEMENT)
|
||||
{
|
||||
return GridFunction::GetVectorValue(T, ip, val, tr);
|
||||
}
|
||||
|
||||
// Check for evaluation in a local element
|
||||
int nbr_el_no = T.ElementNo - pfes->GetParMesh()->GetNE();
|
||||
if (nbr_el_no < 0)
|
||||
{
|
||||
return GridFunction::GetVectorValue(T, ip, val, tr);
|
||||
}
|
||||
|
||||
// Evaluate using DoFs from a neighboring element
|
||||
if (tr)
|
||||
{
|
||||
T.SetIntPoint(&ip);
|
||||
T.Transform(ip, *tr);
|
||||
}
|
||||
|
||||
Array<int> vdofs;
|
||||
pfes->GetFaceNbrElementVDofs(nbr_el_no, vdofs);
|
||||
const FiniteElement *fe = pfes->GetFaceNbrFE(nbr_el_no);
|
||||
|
||||
int dof = fe->GetDof();
|
||||
Vector loc_data;
|
||||
face_nbr_data.GetSubVector(vdofs, loc_data);
|
||||
if (fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
Vector shape(dof);
|
||||
if (fe->GetMapType() == FiniteElement::VALUE)
|
||||
{
|
||||
fe->CalcShape(ip, shape);
|
||||
}
|
||||
else
|
||||
{
|
||||
fe->CalcPhysShape(T, shape);
|
||||
}
|
||||
int vdim = pfes->GetVDim();
|
||||
val.SetSize(vdim);
|
||||
for (int k = 0; k < vdim; k++)
|
||||
{
|
||||
val(k) = shape * ((const double *)loc_data + dof * k);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
int spaceDim = pfes->GetMesh()->SpaceDimension();
|
||||
DenseMatrix vshape(dof, spaceDim);
|
||||
fe->CalcVShape(T, vshape);
|
||||
val.SetSize(spaceDim);
|
||||
vshape.MultTranspose(loc_data, val);
|
||||
}
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectCoefficient(Coefficient &coeff)
|
||||
{
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
@@ -711,9 +539,7 @@ void ParGridFunction::SaveAsOne(std::ostream &out)
|
||||
int *nfdofs = new int[NRanks];
|
||||
int *nrdofs = new int[NRanks];
|
||||
|
||||
double * h_data = const_cast<double *>(this->HostRead());
|
||||
|
||||
values[0] = h_data;
|
||||
values[0] = data;
|
||||
nv[0] = pfes -> GetVSize();
|
||||
nvdofs[0] = pfes -> GetNVDofs();
|
||||
nedofs[0] = pfes -> GetNEDofs();
|
||||
@@ -814,7 +640,7 @@ void ParGridFunction::SaveAsOne(std::ostream &out)
|
||||
MPI_Send(&nvdofs[0], 1, MPI_INT, 0, 456, MyComm);
|
||||
MPI_Send(&nedofs[0], 1, MPI_INT, 0, 457, MyComm);
|
||||
MPI_Send(&nfdofs[0], 1, MPI_INT, 0, 458, MyComm);
|
||||
MPI_Send(h_data, nv[0], MPI_DOUBLE, 0, 460, MyComm);
|
||||
MPI_Send(data, nv[0], MPI_DOUBLE, 0, 460, MyComm);
|
||||
}
|
||||
|
||||
delete [] values;
|
||||
|
||||
+1
-13
@@ -39,7 +39,7 @@ protected:
|
||||
Vector face_nbr_data;
|
||||
|
||||
/** @brief Vector used as an MPI buffer to send face-neighbor data
|
||||
in ExchangeFaceNbrData() to neighboring processors. */
|
||||
in ExchangeFaceNbrData() to neighboring processors. */
|
||||
//TODO: Use temporary memory to avoid CUDA malloc allocation cost.
|
||||
Vector send_data;
|
||||
|
||||
@@ -209,18 +209,6 @@ public:
|
||||
double GetValue(ElementTransformation &T)
|
||||
{ return GetValue(T.ElementNo, T.GetIntPoint()); }
|
||||
|
||||
// Redefine to handle the case when T describes a face-neighbor element
|
||||
virtual double GetValue(ElementTransformation &T, const IntegrationPoint &ip,
|
||||
int comp = 0, Vector *tr = NULL) const;
|
||||
|
||||
virtual void GetVectorValue(int i, const IntegrationPoint &ip,
|
||||
Vector &val) const;
|
||||
|
||||
// Redefine to handle the case when T describes a face-neighbor element
|
||||
virtual void GetVectorValue(ElementTransformation &T,
|
||||
const IntegrationPoint &ip,
|
||||
Vector &val, Vector *tr = NULL) const;
|
||||
|
||||
using GridFunction::ProjectCoefficient;
|
||||
virtual void ProjectCoefficient(Coefficient &coeff);
|
||||
|
||||
|
||||
+1
-12
@@ -21,6 +21,7 @@ namespace mfem
|
||||
void ParLinearForm::Update(ParFiniteElementSpace *pf)
|
||||
{
|
||||
if (pf) { pfes = pf; }
|
||||
|
||||
LinearForm::Update(pfes);
|
||||
}
|
||||
|
||||
@@ -30,18 +31,6 @@ void ParLinearForm::Update(ParFiniteElementSpace *pf, Vector &v, int v_offset)
|
||||
LinearForm::Update(pf,v,v_offset);
|
||||
}
|
||||
|
||||
void ParLinearForm::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
{
|
||||
LinearForm::MakeRef(f, v, v_offset);
|
||||
pfes = dynamic_cast<ParFiniteElementSpace*>(f);
|
||||
}
|
||||
|
||||
void ParLinearForm::MakeRef(ParFiniteElementSpace *pf, Vector &v, int v_offset)
|
||||
{
|
||||
LinearForm::MakeRef(pf, v, v_offset);
|
||||
pfes = pf;
|
||||
}
|
||||
|
||||
void ParLinearForm::ParallelAssemble(Vector &tv)
|
||||
{
|
||||
const Operator* prolong = pfes->GetProlongationMatrix();
|
||||
|
||||
@@ -92,25 +92,6 @@ public:
|
||||
@note This method does not perform assembly. */
|
||||
void Update(ParFiniteElementSpace *pf, Vector &v, int v_offset);
|
||||
|
||||
|
||||
/** @brief Make the ParLinearForm reference external data on a new
|
||||
FiniteElementSpace. */
|
||||
/** This method changes the FiniteElementSpace associated with the ParLinearForm
|
||||
to @a *f and sets the data of the Vector @a v (plus the @a v_offset) as external
|
||||
data in the ParLinearForm.
|
||||
@note This version of the method will also perform bounds checks when
|
||||
the build option MFEM_DEBUG is enabled. */
|
||||
virtual void MakeRef(FiniteElementSpace *f, Vector &v, int v_offset);
|
||||
|
||||
/** @brief Make the ParLinearForm reference external data on a new
|
||||
ParFiniteElementSpace. */
|
||||
/** This method changes the ParFiniteElementSpace associated with the ParLinearForm
|
||||
to @a *pf and sets the data of the Vector @a v (plus the @a v_offset) as external
|
||||
data in the ParLinearForm.
|
||||
@note This version of the method will also perform bounds checks when
|
||||
the build option MFEM_DEBUG is enabled. */
|
||||
void MakeRef(ParFiniteElementSpace *pf, Vector &v, int v_offset);
|
||||
|
||||
/// Assemble the vector on the true dofs, i.e. P^t v.
|
||||
void ParallelAssemble(Vector &tv);
|
||||
|
||||
|
||||
@@ -64,13 +64,12 @@ void ParNonlinearForm::Mult(const Vector &x, Vector &y) const
|
||||
for (int i = 0; i < n_shared_faces; i++)
|
||||
{
|
||||
tr = pmesh->GetSharedFaceTransformations(i, true);
|
||||
int Elem2NbrNo = tr->Elem2No - pmesh->GetNE();
|
||||
|
||||
fe1 = pfes->GetFE(tr->Elem1No);
|
||||
fe2 = pfes->GetFaceNbrFE(Elem2NbrNo);
|
||||
fe2 = pfes->GetFaceNbrFE(tr->Elem2No);
|
||||
|
||||
pfes->GetElementVDofs(tr->Elem1No, vdofs1);
|
||||
pfes->GetFaceNbrElementVDofs(Elem2NbrNo, vdofs2);
|
||||
pfes->GetFaceNbrElementVDofs(tr->Elem2No, vdofs2);
|
||||
|
||||
el_x.SetSize(vdofs1.Size() + vdofs2.Size());
|
||||
X.GetSubVector(vdofs1, el_x.GetData());
|
||||
|
||||
+57
-136
@@ -27,24 +27,35 @@ ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
ElementDofOrdering e_ordering,
|
||||
FaceType type,
|
||||
L2FaceValues m)
|
||||
: L2FaceRestriction(fes, type, m)
|
||||
: fes(fes),
|
||||
nf(fes.GetNFbyType(type)),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
ndofs(fes.GetNDofs()),
|
||||
dof(nf>0 ?
|
||||
fes.GetTraceElement(0, fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof()
|
||||
: 0),
|
||||
m(m),
|
||||
nfdofs(nf*dof),
|
||||
scatter_indices1(nf*dof),
|
||||
scatter_indices2(m==L2FaceValues::DoubleValued?nf*dof:0),
|
||||
offsets(ndofs+1),
|
||||
gather_indices((m==L2FaceValues::DoubleValued? 2 : 1)*nf*dof)
|
||||
{
|
||||
if (nf==0) { return; }
|
||||
// If fespace == L2
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
const FiniteElement *fe = pfes.GetFE(0);
|
||||
const FiniteElement *fe = fes.GetFE(0);
|
||||
const TensorBasisElement *tfe = dynamic_cast<const TensorBasisElement*>(fe);
|
||||
MFEM_VERIFY(tfe != NULL &&
|
||||
(tfe->GetBasisType()==BasisType::GaussLobatto ||
|
||||
tfe->GetBasisType()==BasisType::Positive),
|
||||
"Only Gauss-Lobatto and Bernstein basis are supported in "
|
||||
"ParL2FaceRestriction.");
|
||||
MFEM_VERIFY(pfes.GetMesh()->Conforming(),
|
||||
MFEM_VERIFY(fes.GetMesh()->Conforming(),
|
||||
"Non-conforming meshes not yet supported with partial assembly.");
|
||||
// Assuming all finite elements are using Gauss-Lobatto dofs
|
||||
height = (m==L2FaceValues::DoubleValued? 2 : 1)*vdim*nf*dof;
|
||||
width = pfes.GetVSize();
|
||||
width = fes.GetVSize();
|
||||
const bool dof_reorder = (e_ordering == ElementDofOrdering::LEXICOGRAPHIC);
|
||||
if (!dof_reorder)
|
||||
{
|
||||
@@ -52,32 +63,32 @@ ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
}
|
||||
if (dof_reorder && nf > 0)
|
||||
{
|
||||
for (int f = 0; f < pfes.GetNF(); ++f)
|
||||
for (int f = 0; f < fes.GetNF(); ++f)
|
||||
{
|
||||
const FiniteElement *fe =
|
||||
pfes.GetTraceElement(f, pfes.GetMesh()->GetFaceBaseGeometry(f));
|
||||
fes.GetTraceElement(f, fes.GetMesh()->GetFaceBaseGeometry(f));
|
||||
const TensorBasisElement* el =
|
||||
dynamic_cast<const TensorBasisElement*>(fe);
|
||||
if (el) { continue; }
|
||||
mfem_error("Finite element not suitable for lexicographic ordering");
|
||||
}
|
||||
}
|
||||
const Table& e2dTable = pfes.GetElementToDofTable();
|
||||
const Table& e2dTable = fes.GetElementToDofTable();
|
||||
const int* elementMap = e2dTable.GetJ();
|
||||
Array<int> faceMap1(dof), faceMap2(dof);
|
||||
int e1, e2;
|
||||
int inf1, inf2;
|
||||
int face_id1, face_id2;
|
||||
int orientation;
|
||||
const int dof1d = pfes.GetFE(0)->GetOrder()+1;
|
||||
const int elem_dofs = pfes.GetFE(0)->GetDof();
|
||||
const int dim = pfes.GetMesh()->SpaceDimension();
|
||||
const int dof1d = fes.GetFE(0)->GetOrder()+1;
|
||||
const int elem_dofs = fes.GetFE(0)->GetDof();
|
||||
const int dim = fes.GetMesh()->SpaceDimension();
|
||||
// Computation of scatter indices
|
||||
int f_ind=0;
|
||||
for (int f = 0; f < pfes.GetNF(); ++f)
|
||||
for (int f = 0; f < fes.GetNF(); ++f)
|
||||
{
|
||||
pfes.GetMesh()->GetFaceElements(f, &e1, &e2);
|
||||
pfes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
|
||||
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
|
||||
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
|
||||
if (dof_reorder)
|
||||
{
|
||||
orientation = inf1 % 64;
|
||||
@@ -125,7 +136,7 @@ ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
{
|
||||
const int se2 = -1 - e2;
|
||||
Array<int> sharedDofs;
|
||||
pfes.GetFaceNbrElementVDofs(se2, sharedDofs);
|
||||
fes.GetFaceNbrElementVDofs(se2, sharedDofs);
|
||||
for (int d = 0; d < dof; ++d)
|
||||
{
|
||||
const int pd = PermuteFaceL2(dim, face_id1, face_id2,
|
||||
@@ -169,10 +180,10 @@ ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
offsets[i] = 0;
|
||||
}
|
||||
f_ind = 0;
|
||||
for (int f = 0; f < pfes.GetNF(); ++f)
|
||||
for (int f = 0; f < fes.GetNF(); ++f)
|
||||
{
|
||||
pfes.GetMesh()->GetFaceElements(f, &e1, &e2);
|
||||
pfes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
|
||||
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
|
||||
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
|
||||
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
|
||||
(type==FaceType::Boundary && e2<0 && inf2<0) )
|
||||
{
|
||||
@@ -211,10 +222,10 @@ ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
f_ind = 0;
|
||||
for (int f = 0; f < pfes.GetNF(); ++f)
|
||||
for (int f = 0; f < fes.GetNF(); ++f)
|
||||
{
|
||||
pfes.GetMesh()->GetFaceElements(f, &e1, &e2);
|
||||
pfes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
|
||||
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
|
||||
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
|
||||
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
|
||||
(type==FaceType::Boundary && e2<0 && inf2<0) )
|
||||
{
|
||||
@@ -261,10 +272,8 @@ ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
|
||||
void ParL2FaceRestriction::Mult(const Vector& x, Vector& y) const
|
||||
{
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
ParGridFunction x_gf;
|
||||
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(&pfes),
|
||||
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(&fes),
|
||||
const_cast<Vector&>(x), 0);
|
||||
x_gf.ExchangeFaceNbrData();
|
||||
|
||||
@@ -328,122 +337,34 @@ void ParL2FaceRestriction::Mult(const Vector& x, Vector& y) const
|
||||
}
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE int AddNnz(const int iE, int *I, const int dofs)
|
||||
void ParL2FaceRestriction::MultTranspose(const Vector& x, Vector& y) const
|
||||
{
|
||||
int val = AtomicAdd(I[iE],dofs);
|
||||
return val;
|
||||
}
|
||||
|
||||
void ParL2FaceRestriction::FillI(SparseMatrix &mat,
|
||||
SparseMatrix &face_mat) const
|
||||
{
|
||||
const int face_dofs = dof;
|
||||
const int Ndofs = ndofs;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto I = mat.ReadWriteI();
|
||||
auto I_face = face_mat.ReadWriteI();
|
||||
MFEM_FORALL(i, ne*elemDofs*vdim+1,
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
const int dofs = nfdofs;
|
||||
auto d_offsets = offsets.Read();
|
||||
auto d_indices = gather_indices.Read();
|
||||
auto d_x = Reshape(x.Read(), nd, vd, 2, nf);
|
||||
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
I_face[i] = 0;
|
||||
});
|
||||
MFEM_FORALL(fdof, nf*face_dofs,
|
||||
{
|
||||
const int f = fdof/face_dofs;
|
||||
const int iF = fdof%face_dofs;
|
||||
const int iE1 = d_indices1[f*face_dofs+iF];
|
||||
if (iE1 < Ndofs)
|
||||
const int offset = d_offsets[i];
|
||||
const int nextOffset = d_offsets[i + 1];
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
for (int jF = 0; jF < face_dofs; jF++)
|
||||
double dofValue = 0;
|
||||
for (int j = offset; j < nextOffset; ++j)
|
||||
{
|
||||
const int jE2 = d_indices2[f*face_dofs+jF];
|
||||
if (jE2 < Ndofs)
|
||||
{
|
||||
AddNnz(iE1,I,1);
|
||||
}
|
||||
else
|
||||
{
|
||||
AddNnz(iE1,I_face,1);
|
||||
}
|
||||
}
|
||||
}
|
||||
const int iE2 = d_indices2[f*face_dofs+iF];
|
||||
if (iE2 < Ndofs)
|
||||
{
|
||||
for (int jF = 0; jF < face_dofs; jF++)
|
||||
{
|
||||
const int jE1 = d_indices1[f*face_dofs+jF];
|
||||
if (jE1 < Ndofs)
|
||||
{
|
||||
AddNnz(iE2,I,1);
|
||||
}
|
||||
else
|
||||
{
|
||||
AddNnz(iE2,I_face,1);
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void ParL2FaceRestriction::FillJAndData(const Vector &ea_data,
|
||||
SparseMatrix &mat,
|
||||
SparseMatrix &face_mat) const
|
||||
{
|
||||
const int face_dofs = dof;
|
||||
const int Ndofs = ndofs;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto mat_fea = Reshape(ea_data.Read(), face_dofs, face_dofs, 2, nf);
|
||||
auto I = mat.ReadWriteI();
|
||||
auto I_face = face_mat.ReadWriteI();
|
||||
auto J = mat.WriteJ();
|
||||
auto J_face = face_mat.WriteJ();
|
||||
auto Data = mat.WriteData();
|
||||
auto Data_face = face_mat.WriteData();
|
||||
MFEM_FORALL(fdof, nf*face_dofs,
|
||||
{
|
||||
const int f = fdof/face_dofs;
|
||||
const int iF = fdof%face_dofs;
|
||||
const int iE1 = d_indices1[f*face_dofs+iF];
|
||||
if (iE1 < Ndofs)
|
||||
{
|
||||
for (int jF = 0; jF < face_dofs; jF++)
|
||||
{
|
||||
const int jE2 = d_indices2[f*face_dofs+jF];
|
||||
if (jE2 < Ndofs)
|
||||
{
|
||||
const int offset = AddNnz(iE1,I,1);
|
||||
J[offset] = jE2;
|
||||
Data[offset] = mat_fea(jF,iF,1,f);
|
||||
}
|
||||
else
|
||||
{
|
||||
const int offset = AddNnz(iE1,I_face,1);
|
||||
J_face[offset] = jE2-Ndofs;
|
||||
Data_face[offset] = mat_fea(jF,iF,1,f);
|
||||
}
|
||||
}
|
||||
}
|
||||
const int iE2 = d_indices2[f*face_dofs+iF];
|
||||
if (iE2 < Ndofs)
|
||||
{
|
||||
for (int jF = 0; jF < face_dofs; jF++)
|
||||
{
|
||||
const int jE1 = d_indices1[f*face_dofs+jF];
|
||||
if (jE1 < Ndofs)
|
||||
{
|
||||
const int offset = AddNnz(iE2,I,1);
|
||||
J[offset] = jE1;
|
||||
Data[offset] = mat_fea(jF,iF,0,f);
|
||||
}
|
||||
else
|
||||
{
|
||||
const int offset = AddNnz(iE2,I_face,1);
|
||||
J_face[offset] = jE1-Ndofs;
|
||||
Data_face[offset] = mat_fea(jF,iF,0,f);
|
||||
}
|
||||
int idx_j = d_indices[j];
|
||||
bool isE1 = idx_j < dofs;
|
||||
idx_j = isE1 ? idx_j : idx_j - dofs;
|
||||
dofValue += isE1 ?
|
||||
d_x(idx_j % nd, c, 0, idx_j / nd)
|
||||
:d_x(idx_j % nd, c, 1, idx_j / nd);
|
||||
}
|
||||
d_y(t?c:i,t?i:c) += dofValue;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
+16
-9
@@ -26,21 +26,28 @@ class ParFiniteElementSpace;
|
||||
/// Operator that extracts Face degrees of freedom in parallel.
|
||||
/** Objects of this type are typically created and owned by FiniteElementSpace
|
||||
objects, see FiniteElementSpace::GetFaceRestriction(). */
|
||||
class ParL2FaceRestriction : public L2FaceRestriction
|
||||
class ParL2FaceRestriction : public Operator
|
||||
{
|
||||
protected:
|
||||
const ParFiniteElementSpace &fes;
|
||||
const int nf;
|
||||
const int vdim;
|
||||
const bool byvdim;
|
||||
const int ndofs;
|
||||
const int dof;
|
||||
const L2FaceValues m;
|
||||
const int nfdofs;
|
||||
Array<int> scatter_indices1;
|
||||
Array<int> scatter_indices2;
|
||||
Array<int> offsets;
|
||||
Array<int> gather_indices;
|
||||
|
||||
public:
|
||||
ParL2FaceRestriction(const ParFiniteElementSpace&, ElementDofOrdering,
|
||||
FaceType type,
|
||||
L2FaceValues m = L2FaceValues::DoubleValued);
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
/** Fill the I array of SparseMatrix corresponding to the sparsity pattern
|
||||
given by this ParL2FaceRestriction. */
|
||||
void FillI(SparseMatrix &mat, SparseMatrix &face_mat) const;
|
||||
/** Fill the J and Data arrays of SparseMatrix corresponding to the sparsity
|
||||
pattern given by this ParL2FaceRestriction, and the values of ea_data. */
|
||||
void FillJAndData(const Vector &ea_data,
|
||||
SparseMatrix &mat,
|
||||
SparseMatrix &face_mat) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
@@ -150,6 +150,7 @@ void QuadratureInterpolator::Eval3D(
|
||||
const int nq = maps.nqpt;
|
||||
const int ND = T_ND ? T_ND : nd;
|
||||
const int NQ = T_NQ ? T_NQ : nq;
|
||||
const int NMAX = NQ > ND ? NQ : ND;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
MFEM_VERIFY(ND <= MAX_ND3D, "");
|
||||
MFEM_VERIFY(NQ <= MAX_NQ3D, "");
|
||||
@@ -160,22 +161,24 @@ void QuadratureInterpolator::Eval3D(
|
||||
auto val = Reshape(q_val.Write(), NQ, VDIM, NE);
|
||||
auto der = Reshape(q_der.Write(), NQ, VDIM, 3, NE);
|
||||
auto det = Reshape(q_det.Write(), NQ, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
MFEM_FORALL_2D(e, NE, NMAX, 1, 1,
|
||||
{
|
||||
const int ND = T_ND ? T_ND : nd;
|
||||
const int NQ = T_NQ ? T_NQ : nq;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int max_ND = T_ND ? T_ND : MAX_ND3D;
|
||||
constexpr int max_VDIM = T_VDIM ? T_VDIM : MAX_VDIM3D;
|
||||
double s_E[max_VDIM*max_ND];
|
||||
for (int d = 0; d < ND; d++)
|
||||
MFEM_SHARED double s_E[max_VDIM*max_ND];
|
||||
MFEM_FOREACH_THREAD(d, x, ND)
|
||||
{
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
s_E[c+d*VDIM] = E(d,c,e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(q, x, NQ)
|
||||
{
|
||||
if (eval_flags & VALUES)
|
||||
{
|
||||
|
||||
@@ -495,8 +495,9 @@ void FaceQuadratureInterpolator::Mult(
|
||||
}
|
||||
}
|
||||
|
||||
void FaceQuadratureInterpolator::Values(
|
||||
const Vector &e_vec, Vector &q_val) const
|
||||
|
||||
void FaceQuadratureInterpolator::Values(const Vector &e_vec,
|
||||
Vector &q_val) const
|
||||
{
|
||||
Vector q_der, q_det, q_nor;
|
||||
Mult(e_vec, VALUES, q_val, q_der, q_det, q_nor);
|
||||
|
||||
+52
-421
@@ -17,6 +17,55 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
L2ElementRestriction::L2ElementRestriction(const FiniteElementSpace &fes)
|
||||
: ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
ndof(ne > 0 ? fes.GetFE(0)->GetDof() : 0),
|
||||
ndofs(fes.GetNDofs())
|
||||
{
|
||||
height = vdim*ne*ndof;
|
||||
width = vdim*ne*ndof;
|
||||
}
|
||||
|
||||
void L2ElementRestriction::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
const int nd = ndof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_y = Reshape(y.Write(), nd, vd, ne);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int idx = i;
|
||||
const int dof = idx % nd;
|
||||
const int e = idx / nd;
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
d_y(dof, c, e) = d_x(t?c:idx, t?idx:c);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void L2ElementRestriction::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
const int nd = ndof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
auto d_x = Reshape(x.Read(), nd, vd, ne);
|
||||
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int idx = i;
|
||||
const int dof = idx % nd;
|
||||
const int e = idx / nd;
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
d_y(t?c:idx,t?idx:c) = d_x(dof, c, e);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
ElementRestriction::ElementRestriction(const FiniteElementSpace &f,
|
||||
ElementDofOrdering e_ordering)
|
||||
: fes(f),
|
||||
@@ -232,309 +281,7 @@ void ElementRestriction::BooleanMask(Vector& y) const
|
||||
}
|
||||
}
|
||||
|
||||
void ElementRestriction::FillSparseMatrix(const Vector &mat_ea,
|
||||
SparseMatrix &mat) const
|
||||
{
|
||||
mat.GetMemoryI().New(mat.Height()+1, mat.GetMemoryI().GetMemoryType());
|
||||
const int nnz = FillI(mat);
|
||||
mat.GetMemoryJ().New(nnz, mat.GetMemoryJ().GetMemoryType());
|
||||
mat.GetMemoryData().New(nnz, mat.GetMemoryData().GetMemoryType());
|
||||
FillJAndData(mat_ea, mat);
|
||||
}
|
||||
|
||||
template <int MaxNbNbr>
|
||||
static MFEM_HOST_DEVICE int GetMinElt(const int *my_elts, const int nbElts,
|
||||
const int *nbr_elts, const int nbrNbElts)
|
||||
{
|
||||
// Building the intersection
|
||||
int inter[MaxNbNbr];
|
||||
int cpt = 0;
|
||||
for (int i = 0; i < nbElts; i++)
|
||||
{
|
||||
const int e_i = my_elts[i];
|
||||
for (int j = 0; j < nbrNbElts; j++)
|
||||
{
|
||||
if (e_i==nbr_elts[j])
|
||||
{
|
||||
inter[cpt] = e_i;
|
||||
cpt++;
|
||||
}
|
||||
}
|
||||
}
|
||||
// Finding the minimum
|
||||
int min = inter[0];
|
||||
for (int i = 1; i < cpt; i++)
|
||||
{
|
||||
if (inter[i] < min)
|
||||
{
|
||||
min = inter[i];
|
||||
}
|
||||
}
|
||||
return min;
|
||||
}
|
||||
|
||||
/** Returns the index where a non-zero entry should be added and increment the
|
||||
number of non-zeros for the row i_L. */
|
||||
static MFEM_HOST_DEVICE int GetAndIncrementNnzIndex(const int i_L, int* I)
|
||||
{
|
||||
int ind = AtomicAdd(I[i_L],1);
|
||||
return ind;
|
||||
}
|
||||
|
||||
int ElementRestriction::FillI(SparseMatrix &mat) const
|
||||
{
|
||||
static constexpr int Max = MaxNbNbr;
|
||||
const int all_dofs = ndofs;
|
||||
const int vd = vdim;
|
||||
const int elt_dofs = dof;
|
||||
auto I = mat.ReadWriteI();
|
||||
auto d_offsets = offsets.Read();
|
||||
auto d_indices = indices.Read();
|
||||
auto d_gatherMap = gatherMap.Read();
|
||||
MFEM_FORALL(i_L, vd*all_dofs+1,
|
||||
{
|
||||
I[i_L] = 0;
|
||||
});
|
||||
MFEM_FORALL(e, ne,
|
||||
{
|
||||
for (int i = 0; i < elt_dofs; i++)
|
||||
{
|
||||
int i_elts[Max];
|
||||
const int i_E = e*elt_dofs + i;
|
||||
const int i_L = d_gatherMap[i_E];
|
||||
const int i_offset = d_offsets[i_L];
|
||||
const int i_nextOffset = d_offsets[i_L+1];
|
||||
const int i_nbElts = i_nextOffset - i_offset;
|
||||
for (int e_i = 0; e_i < i_nbElts; ++e_i)
|
||||
{
|
||||
const int i_E = d_indices[i_offset+e_i];
|
||||
i_elts[e_i] = i_E/elt_dofs;
|
||||
}
|
||||
for (int j = 0; j < elt_dofs; j++)
|
||||
{
|
||||
const int j_E = e*elt_dofs + j;
|
||||
const int j_L = d_gatherMap[j_E];
|
||||
const int j_offset = d_offsets[j_L];
|
||||
const int j_nextOffset = d_offsets[j_L+1];
|
||||
const int j_nbElts = j_nextOffset - j_offset;
|
||||
if (i_nbElts == 1 || j_nbElts == 1) // no assembly required
|
||||
{
|
||||
GetAndIncrementNnzIndex(i_L, I);
|
||||
}
|
||||
else // assembly required
|
||||
{
|
||||
int j_elts[Max];
|
||||
for (int e_j = 0; e_j < j_nbElts; ++e_j)
|
||||
{
|
||||
const int j_E = d_indices[j_offset+e_j];
|
||||
const int elt = j_E/elt_dofs;
|
||||
j_elts[e_j] = elt;
|
||||
}
|
||||
int min_e = GetMinElt<Max>(i_elts, i_nbElts, j_elts, j_nbElts);
|
||||
if (e == min_e) // add the nnz only once
|
||||
{
|
||||
GetAndIncrementNnzIndex(i_L, I);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
// We need to sum the entries of I, we do it on CPU as it is very sequential.
|
||||
auto h_I = mat.HostReadWriteI();
|
||||
const int nTdofs = vd*all_dofs;
|
||||
int sum = 0;
|
||||
for (int i = 0; i < nTdofs; i++)
|
||||
{
|
||||
const int nnz = h_I[i];
|
||||
h_I[i] = sum;
|
||||
sum+=nnz;
|
||||
}
|
||||
h_I[nTdofs] = sum;
|
||||
// We return the number of nnz
|
||||
return h_I[nTdofs];
|
||||
}
|
||||
|
||||
void ElementRestriction::FillJAndData(const Vector &ea_data,
|
||||
SparseMatrix &mat) const
|
||||
{
|
||||
static constexpr int Max = MaxNbNbr;
|
||||
const int all_dofs = ndofs;
|
||||
const int vd = vdim;
|
||||
const int elt_dofs = dof;
|
||||
auto I = mat.ReadWriteI();
|
||||
auto J = mat.WriteJ();
|
||||
auto Data = mat.WriteData();
|
||||
auto d_offsets = offsets.Read();
|
||||
auto d_indices = indices.Read();
|
||||
auto d_gatherMap = gatherMap.Read();
|
||||
auto mat_ea = Reshape(ea_data.Read(), elt_dofs, elt_dofs, ne);
|
||||
MFEM_FORALL(e, ne,
|
||||
{
|
||||
for (int i = 0; i < elt_dofs; i++)
|
||||
{
|
||||
int i_elts[Max];
|
||||
int i_B[Max];
|
||||
const int i_E = e*elt_dofs + i;
|
||||
const int i_L = d_gatherMap[i_E];
|
||||
const int i_offset = d_offsets[i_L];
|
||||
const int i_nextOffset = d_offsets[i_L+1];
|
||||
const int i_nbElts = i_nextOffset - i_offset;
|
||||
for (int e_i = 0; e_i < i_nbElts; ++e_i)
|
||||
{
|
||||
const int i_E = d_indices[i_offset+e_i];
|
||||
i_elts[e_i] = i_E/elt_dofs;
|
||||
i_B[e_i] = i_E%elt_dofs;
|
||||
}
|
||||
for (int j = 0; j < elt_dofs; j++)
|
||||
{
|
||||
const int j_E = e*elt_dofs + j;
|
||||
const int j_L = d_gatherMap[j_E];
|
||||
const int j_offset = d_offsets[j_L];
|
||||
const int j_nextOffset = d_offsets[j_L+1];
|
||||
const int j_nbElts = j_nextOffset - j_offset;
|
||||
if (i_nbElts == 1 || j_nbElts == 1) // no assembly required
|
||||
{
|
||||
const int nnz = GetAndIncrementNnzIndex(i_L, I);
|
||||
J[nnz] = j_L;
|
||||
Data[nnz] = mat_ea(j,i,e);
|
||||
}
|
||||
else // assembly required
|
||||
{
|
||||
int j_elts[Max];
|
||||
int j_B[Max];
|
||||
for (int e_j = 0; e_j < j_nbElts; ++e_j)
|
||||
{
|
||||
const int j_E = d_indices[j_offset+e_j];
|
||||
const int elt = j_E/elt_dofs;
|
||||
j_elts[e_j] = elt;
|
||||
j_B[e_j] = j_E%elt_dofs;
|
||||
}
|
||||
int min_e = GetMinElt<Max>(i_elts, i_nbElts, j_elts, j_nbElts);
|
||||
if (e == min_e) // add the nnz only once
|
||||
{
|
||||
double val = 0.0;
|
||||
for (int i = 0; i < i_nbElts; i++)
|
||||
{
|
||||
const int e_i = i_elts[i];
|
||||
const int i_Bloc = i_B[i];
|
||||
for (int j = 0; j < j_nbElts; j++)
|
||||
{
|
||||
const int e_j = j_elts[j];
|
||||
const int j_Bloc = j_B[j];
|
||||
if (e_i == e_j)
|
||||
{
|
||||
val += mat_ea(j_Bloc, i_Bloc, e_i);
|
||||
}
|
||||
}
|
||||
}
|
||||
const int nnz = GetAndIncrementNnzIndex(i_L, I);
|
||||
J[nnz] = j_L;
|
||||
Data[nnz] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
// We need to shift again the entries of I, we do it on CPU as it is very
|
||||
// sequential.
|
||||
auto h_I = mat.HostReadWriteI();
|
||||
const int size = vd*all_dofs;
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
h_I[size-i] = h_I[size-(i+1)];
|
||||
}
|
||||
h_I[0] = 0;
|
||||
}
|
||||
|
||||
L2ElementRestriction::L2ElementRestriction(const FiniteElementSpace &fes)
|
||||
: ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
ndof(ne > 0 ? fes.GetFE(0)->GetDof() : 0),
|
||||
ndofs(fes.GetNDofs())
|
||||
{
|
||||
height = vdim*ne*ndof;
|
||||
width = vdim*ne*ndof;
|
||||
}
|
||||
|
||||
void L2ElementRestriction::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
const int nd = ndof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_y = Reshape(y.Write(), nd, vd, ne);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int idx = i;
|
||||
const int dof = idx % nd;
|
||||
const int e = idx / nd;
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
d_y(dof, c, e) = d_x(t?c:idx, t?idx:c);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void L2ElementRestriction::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
const int nd = ndof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
auto d_x = Reshape(x.Read(), nd, vd, ne);
|
||||
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int idx = i;
|
||||
const int dof = idx % nd;
|
||||
const int e = idx / nd;
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
d_y(t?c:idx,t?idx:c) = d_x(dof, c, e);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void L2ElementRestriction::FillI(SparseMatrix &mat) const
|
||||
{
|
||||
const int elem_dofs = ndof;
|
||||
const int vd = vdim;
|
||||
auto I = mat.WriteI();
|
||||
MFEM_FORALL(dof, ne*elem_dofs*vd,
|
||||
{
|
||||
I[dof] = elem_dofs;
|
||||
});
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE int AddNnz(const int iE, int *I, const int dofs)
|
||||
{
|
||||
int val = AtomicAdd(I[iE],dofs);
|
||||
return val;
|
||||
}
|
||||
|
||||
void L2ElementRestriction::FillJAndData(const Vector &ea_data,
|
||||
SparseMatrix &mat) const
|
||||
{
|
||||
const int elem_dofs = ndof;
|
||||
const int vd = vdim;
|
||||
auto I = mat.ReadWriteI();
|
||||
auto J = mat.WriteJ();
|
||||
auto Data = mat.WriteData();
|
||||
auto mat_ea = Reshape(ea_data.Read(), elem_dofs, elem_dofs, ne);
|
||||
MFEM_FORALL(iE, ne*elem_dofs*vd,
|
||||
{
|
||||
const int offset = AddNnz(iE,I,elem_dofs);
|
||||
const int e = iE/elem_dofs;
|
||||
const int i = iE%elem_dofs;
|
||||
for (int j = 0; j < elem_dofs; j++)
|
||||
{
|
||||
J[offset+j] = e*elem_dofs+j;
|
||||
Data[offset+j] = mat_ea(j,i,e);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Return the face degrees of freedom returned in Lexicographic order.
|
||||
/// Return the face degrees of freedom returned in Lexicographic order.
|
||||
void GetFaceDofs(const int dim, const int face_id,
|
||||
const int dof1d, Array<int> &faceMap)
|
||||
{
|
||||
@@ -953,7 +700,7 @@ static int PermuteFace3D(const int face_id1, const int face_id2,
|
||||
return ToLexOrdering3D(face_id2, size1d, new_i, new_j);
|
||||
}
|
||||
|
||||
// Permute dofs or quads on a face for e2 to match with the ordering of e1
|
||||
/// Permute dofs or quads on a face for e2 to match with the ordering of e1
|
||||
int PermuteFaceL2(const int dim, const int face_id1,
|
||||
const int face_id2, const int orientation,
|
||||
const int size1d, const int index)
|
||||
@@ -973,32 +720,23 @@ int PermuteFaceL2(const int dim, const int face_id1,
|
||||
}
|
||||
|
||||
L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
|
||||
const ElementDofOrdering e_ordering,
|
||||
const FaceType type,
|
||||
const L2FaceValues m)
|
||||
: fes(fes),
|
||||
nf(fes.GetNFbyType(type)),
|
||||
ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
ndofs(fes.GetNDofs()),
|
||||
dof(nf > 0 ?
|
||||
fes.GetTraceElement(0, fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof()
|
||||
: 0),
|
||||
elemDofs(fes.GetFE(0)->GetDof()),
|
||||
m(m),
|
||||
nfdofs(nf*dof),
|
||||
scatter_indices1(nf*dof),
|
||||
scatter_indices2(m==L2FaceValues::DoubleValued?nf*dof:0),
|
||||
offsets(ndofs+1),
|
||||
gather_indices((m==L2FaceValues::DoubleValued? 2 : 1)*nf*dof)
|
||||
{
|
||||
}
|
||||
|
||||
L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
|
||||
const ElementDofOrdering e_ordering,
|
||||
const FaceType type,
|
||||
const L2FaceValues m)
|
||||
: L2FaceRestriction(fes, type, m)
|
||||
{
|
||||
// If fespace == L2
|
||||
const FiniteElement *fe = fes.GetFE(0);
|
||||
@@ -1296,113 +1034,6 @@ void L2FaceRestriction::MultTranspose(const Vector& x, Vector& y) const
|
||||
}
|
||||
}
|
||||
|
||||
void L2FaceRestriction::FillI(SparseMatrix &mat,
|
||||
SparseMatrix &face_mat) const
|
||||
{
|
||||
const int face_dofs = dof;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto I = mat.ReadWriteI();
|
||||
MFEM_FORALL(fdof, nf*face_dofs,
|
||||
{
|
||||
const int iE1 = d_indices1[fdof];
|
||||
const int iE2 = d_indices2[fdof];
|
||||
AddNnz(iE1,I,face_dofs);
|
||||
AddNnz(iE2,I,face_dofs);
|
||||
});
|
||||
}
|
||||
|
||||
void L2FaceRestriction::FillJAndData(const Vector &ea_data,
|
||||
SparseMatrix &mat,
|
||||
SparseMatrix &face_mat) const
|
||||
{
|
||||
const int face_dofs = dof;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto I = mat.ReadWriteI();
|
||||
auto mat_fea = Reshape(ea_data.Read(), face_dofs, face_dofs, 2, nf);
|
||||
auto J = mat.WriteJ();
|
||||
auto Data = mat.WriteData();
|
||||
MFEM_FORALL(fdof, nf*face_dofs,
|
||||
{
|
||||
const int f = fdof/face_dofs;
|
||||
const int iF = fdof%face_dofs;
|
||||
const int iE1 = d_indices1[f*face_dofs+iF];
|
||||
const int iE2 = d_indices2[f*face_dofs+iF];
|
||||
const int offset1 = AddNnz(iE1,I,face_dofs);
|
||||
const int offset2 = AddNnz(iE2,I,face_dofs);
|
||||
for (int jF = 0; jF < face_dofs; jF++)
|
||||
{
|
||||
const int jE1 = d_indices1[f*face_dofs+jF];
|
||||
const int jE2 = d_indices2[f*face_dofs+jF];
|
||||
J[offset2+jF] = jE1;
|
||||
J[offset1+jF] = jE2;
|
||||
Data[offset2+jF] = mat_fea(jF,iF,0,f);
|
||||
Data[offset1+jF] = mat_fea(jF,iF,1,f);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void L2FaceRestriction::AddFaceMatricesToElementMatrices(Vector &fea_data,
|
||||
Vector &ea_data) const
|
||||
{
|
||||
const int face_dofs = dof;
|
||||
const int elem_dofs = elemDofs;
|
||||
const int NE = ne;
|
||||
if (m==L2FaceValues::DoubleValued)
|
||||
{
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto mat_fea = Reshape(fea_data.Read(), face_dofs, face_dofs, 2, nf);
|
||||
auto mat_ea = Reshape(ea_data.ReadWrite(), elem_dofs, elem_dofs, ne);
|
||||
MFEM_FORALL(f, nf,
|
||||
{
|
||||
const int e1 = d_indices1[f*face_dofs]/elem_dofs;
|
||||
const int e2 = d_indices2[f*face_dofs]/elem_dofs;
|
||||
for (int j = 0; j < face_dofs; j++)
|
||||
{
|
||||
const int jB1 = d_indices1[f*face_dofs+j]%elem_dofs;
|
||||
for (int i = 0; i < face_dofs; i++)
|
||||
{
|
||||
const int iB1 = d_indices1[f*face_dofs+i]%elem_dofs;
|
||||
AtomicAdd(mat_ea(iB1,jB1,e1), mat_fea(i,j,0,f));
|
||||
}
|
||||
}
|
||||
if (e2 < NE)
|
||||
{
|
||||
for (int j = 0; j < face_dofs; j++)
|
||||
{
|
||||
const int jB2 = d_indices2[f*face_dofs+j]%elem_dofs;
|
||||
for (int i = 0; i < face_dofs; i++)
|
||||
{
|
||||
const int iB2 = d_indices2[f*face_dofs+i]%elem_dofs;
|
||||
AtomicAdd(mat_ea(iB2,jB2,e2), mat_fea(i,j,1,f));
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
else
|
||||
{
|
||||
auto d_indices = scatter_indices1.Read();
|
||||
auto mat_fea = Reshape(fea_data.Read(), face_dofs, face_dofs, nf);
|
||||
auto mat_ea = Reshape(ea_data.ReadWrite(), elem_dofs, elem_dofs, ne);
|
||||
MFEM_FORALL(f, nf,
|
||||
{
|
||||
const int e = d_indices[f*face_dofs]/elem_dofs;
|
||||
for (int j = 0; j < face_dofs; j++)
|
||||
{
|
||||
const int jE = d_indices[f*face_dofs+j]%elem_dofs;
|
||||
for (int i = 0; i < face_dofs; i++)
|
||||
{
|
||||
const int iE = d_indices[f*face_dofs+i]%elem_dofs;
|
||||
AtomicAdd(mat_ea(iE,jE,e), mat_fea(i,j,f));
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
int ToLexOrdering(const int dim, const int face_id, const int size1d,
|
||||
const int index)
|
||||
{
|
||||
|
||||
+1
-39
@@ -30,11 +30,6 @@ enum class L2FaceValues : bool {SingleValued, DoubleValued};
|
||||
objects, see FiniteElementSpace::GetElementRestriction(). */
|
||||
class ElementRestriction : public Operator
|
||||
{
|
||||
private:
|
||||
/** This number defines the maximum number of elements any dof can belong to
|
||||
for the FillSparseMatrix method. */
|
||||
static const int MaxNbNbr = 16;
|
||||
|
||||
protected:
|
||||
const FiniteElementSpace &fes;
|
||||
const int ne;
|
||||
@@ -64,16 +59,6 @@ public:
|
||||
emulate SetSubVector and its transpose on GPUs. This method is running on
|
||||
the host, since the `processed` array requires a large shared memory. */
|
||||
void BooleanMask(Vector& y) const;
|
||||
|
||||
/// Fill a Sparse Matrix with Element Matrices.
|
||||
void FillSparseMatrix(const Vector &mat_ea, SparseMatrix &mat) const;
|
||||
|
||||
/** Fill the I array of SparseMatrix corresponding to the sparsity pattern
|
||||
given by this ElementRestriction. */
|
||||
int FillI(SparseMatrix &mat) const;
|
||||
/** Fill the J and Data arrays of SparseMatrix corresponding to the sparsity
|
||||
pattern given by this ElementRestriction, and the values of ea_data. */
|
||||
void FillJAndData(const Vector &ea_data, SparseMatrix &mat) const;
|
||||
};
|
||||
|
||||
/// Operator that converts L2 FiniteElementSpace L-vectors to E-vectors.
|
||||
@@ -92,12 +77,6 @@ public:
|
||||
L2ElementRestriction(const FiniteElementSpace&);
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
/** Fill the I array of SparseMatrix corresponding to the sparsity pattern
|
||||
given by this ElementRestriction. */
|
||||
void FillI(SparseMatrix &mat) const;
|
||||
/** Fill the J and Data arrays of SparseMatrix corresponding to the sparsity
|
||||
pattern given by this L2FaceRestriction, and the values of ea_data. */
|
||||
void FillJAndData(const Vector &ea_data, SparseMatrix &mat) const;
|
||||
};
|
||||
|
||||
/// Operator that extracts Face degrees of freedom.
|
||||
@@ -132,12 +111,10 @@ class L2FaceRestriction : public Operator
|
||||
protected:
|
||||
const FiniteElementSpace &fes;
|
||||
const int nf;
|
||||
const int ne;
|
||||
const int vdim;
|
||||
const bool byvdim;
|
||||
const int ndofs;
|
||||
const int dof;
|
||||
const int elemDofs;
|
||||
const L2FaceValues m;
|
||||
const int nfdofs;
|
||||
Array<int> scatter_indices1;
|
||||
@@ -145,27 +122,12 @@ protected:
|
||||
Array<int> offsets;
|
||||
Array<int> gather_indices;
|
||||
|
||||
L2FaceRestriction(const FiniteElementSpace&,
|
||||
const FaceType,
|
||||
const L2FaceValues m = L2FaceValues::DoubleValued);
|
||||
|
||||
public:
|
||||
L2FaceRestriction(const FiniteElementSpace&, const ElementDofOrdering,
|
||||
const FaceType,
|
||||
const L2FaceValues m = L2FaceValues::DoubleValued);
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
/** Fill the I array of SparseMatrix corresponding to the sparsity pattern
|
||||
given by this L2FaceRestriction. */
|
||||
virtual void FillI(SparseMatrix &mat, SparseMatrix &face_mat) const;
|
||||
/** Fill the J and Data arrays of SparseMatrix corresponding to the sparsity
|
||||
pattern given by this L2FaceRestriction, and the values of ea_data. */
|
||||
virtual void FillJAndData(const Vector &ea_data,
|
||||
SparseMatrix &mat,
|
||||
SparseMatrix &face_mat) const;
|
||||
/// This methods adds the DG face matrices to the element matrices.
|
||||
void AddFaceMatricesToElementMatrices(Vector &fea_data,
|
||||
Vector &ea_data) const;
|
||||
};
|
||||
|
||||
// Return the face degrees of freedom returned in Lexicographic order.
|
||||
|
||||
+74
-511
@@ -177,6 +177,24 @@ double TMOP_Metric_SSA2D::EvalW(const DenseMatrix &Jpt) const
|
||||
return Mat.FNorm2();
|
||||
}
|
||||
|
||||
// mu_85 = |T-T'|^2, where T'= |T|*I/sqrt(2)
|
||||
double TMOP_Metric_SS2D::EvalW(const DenseMatrix &Jpt) const
|
||||
{
|
||||
MFEM_VERIFY(Jtr != NULL,
|
||||
"Requires a target Jacobian, use SetTargetJacobian().");
|
||||
|
||||
DenseMatrix Id(2,2);
|
||||
DenseMatrix Mat(2,2);
|
||||
Mat = Jpt;
|
||||
|
||||
Id(0,0) = 1; Id(0,1) = 0;
|
||||
Id(1,0) = 0; Id(1,1) = 1;
|
||||
Id *= Mat.FNorm()/pow(2,0.5);
|
||||
|
||||
Mat.Add(-1.,Id);
|
||||
return Mat.FNorm2();
|
||||
}
|
||||
|
||||
double TMOP_Metric_002::EvalW(const DenseMatrix &Jpt) const
|
||||
{
|
||||
ie.SetJacobian(Jpt.GetData());
|
||||
@@ -466,24 +484,6 @@ void TMOP_Metric_077::AssembleH(const DenseMatrix &Jpt,
|
||||
ie.Assemble_TProd(weight * I2inv_sq / I2, ie.Get_dI2(), A.GetData());
|
||||
}
|
||||
|
||||
// mu_85 = |T-T'|^2, where T'= |T|*I/sqrt(2)
|
||||
double TMOP_Metric_085::EvalW(const DenseMatrix &Jpt) const
|
||||
{
|
||||
MFEM_VERIFY(Jtr != NULL,
|
||||
"Requires a target Jacobian, use SetTargetJacobian().");
|
||||
|
||||
DenseMatrix Id(2,2);
|
||||
DenseMatrix Mat(2,2);
|
||||
Mat = Jpt;
|
||||
|
||||
Id(0,0) = 1; Id(0,1) = 0;
|
||||
Id(1,0) = 0; Id(1,1) = 1;
|
||||
Id *= Mat.FNorm()/pow(2,0.5);
|
||||
|
||||
Mat.Add(-1.,Id);
|
||||
return Mat.FNorm2();
|
||||
}
|
||||
|
||||
double TMOP_Metric_211::EvalW(const DenseMatrix &Jpt) const
|
||||
{
|
||||
// mu_211 = (det(J) - 1)^2 - det(J) + (det(J)^2 + eps)^{1/2}
|
||||
@@ -927,20 +927,9 @@ void TargetConstructor::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
}
|
||||
}
|
||||
|
||||
void TargetConstructor::ComputeElementTargetsGradient(const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
IsoparametricTransformation &Tpr,
|
||||
DenseTensor &dJtr) const
|
||||
{
|
||||
MFEM_ASSERT(target_type == IDEAL_SHAPE_UNIT_SIZE || nodes != NULL, "");
|
||||
|
||||
// TODO: Compute derivative for targets with GIVEN_SHAPE or/and GIVEN_SIZE
|
||||
for (int i = 0; i < Tpr.GetFE()->GetDim()*ir.GetNPoints(); i++) { dJtr(i) = 0.; }
|
||||
}
|
||||
|
||||
void AnalyticAdaptTC::SetAnalyticTargetSpec(Coefficient *sspec,
|
||||
VectorCoefficient *vspec,
|
||||
TMOPMatrixCoefficient *mspec)
|
||||
MatrixCoefficient *mspec)
|
||||
{
|
||||
scalar_tspec = sspec;
|
||||
vector_tspec = vspec;
|
||||
@@ -981,39 +970,6 @@ void AnalyticAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
}
|
||||
}
|
||||
|
||||
void AnalyticAdaptTC::ComputeElementTargetsGradient(const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
IsoparametricTransformation &Tpr,
|
||||
DenseTensor &dJtr) const
|
||||
{
|
||||
const FiniteElement *fe = Tpr.GetFE();
|
||||
DenseMatrix point_mat;
|
||||
point_mat.UseExternalData(elfun.GetData(), fe->GetDof(), fe->GetDim());
|
||||
|
||||
switch (target_type)
|
||||
{
|
||||
case GIVEN_FULL:
|
||||
{
|
||||
MFEM_VERIFY(matrix_tspec != NULL,
|
||||
"Target type GIVEN_FULL requires a TMOPMatrixCoefficient.");
|
||||
|
||||
for (int d = 0; d < fe->GetDim(); d++)
|
||||
{
|
||||
for (int i = 0; i < ir.GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(i);
|
||||
Tpr.SetIntPoint(&ip);
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
matrix_tspec->EvalGrad(dJtr_i, Tpr, ip, d);
|
||||
}
|
||||
}
|
||||
break;
|
||||
}
|
||||
default:
|
||||
MFEM_ABORT("Incompatible target type for analytic adaptation!");
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
void DiscreteAdaptTC::FinalizeParDiscreteTargetSpec(const ParGridFunction
|
||||
&tspec_)
|
||||
@@ -1102,6 +1058,7 @@ void DiscreteAdaptTC::SetDiscreteTargetBase(const GridFunction &tspec_)
|
||||
// make a copy of tspec->tspec_temp, increase its size, and
|
||||
// copy data from tspec_temp -> tspec, then add new entries
|
||||
Vector tspec_temp = tspec;
|
||||
tspec.UseDevice(true);
|
||||
tspec.SetSize(ncomp*dof_cnt);
|
||||
|
||||
for (int i = 0; i < tspec_temp.Size(); i++)
|
||||
@@ -1212,7 +1169,7 @@ void DiscreteAdaptTC::UpdateTargetSpecificationAtNode(const FiniteElement &el,
|
||||
|
||||
Array<int> dofs;
|
||||
tspec_fes->GetElementDofs(T.ElementNo, dofs);
|
||||
const int cnt = tspec.Size()/ncomp; // dofs per scalar-field
|
||||
const int cnt = tspec.Size()/ncomp; //dofs per scalar-field
|
||||
|
||||
for (int i = 0; i < ncomp; i++)
|
||||
{
|
||||
@@ -1240,9 +1197,6 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
DenseTensor &Jtr) const
|
||||
{
|
||||
MFEM_VERIFY(tspec_fesv, "No target specifications have been set.");
|
||||
const int dim = fe.GetDim(),
|
||||
nqp = ir.GetNPoints();
|
||||
Jtrcomp.SetSize(dim, dim, 4*nqp);
|
||||
|
||||
switch (target_type)
|
||||
{
|
||||
@@ -1252,7 +1206,7 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
const DenseMatrix &Wideal =
|
||||
Geometries.GetGeomToPerfGeomJac(fe.GetGeomType());
|
||||
const int dim = Wideal.Height(),
|
||||
ndofs = tspec_fes->GetFE(e_id)->GetDof(),
|
||||
ndofs = tspec_fes->GetFE(0)->GetDof(),
|
||||
ntspec_dofs = ndofs*ncomp;
|
||||
|
||||
Vector shape(ndofs), tspec_vals(ntspec_dofs), par_vals,
|
||||
@@ -1261,34 +1215,28 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
Array<int> dofs;
|
||||
DenseMatrix D_rho(dim), Q_phi(dim), R_theta(dim);
|
||||
tspec_fesv->GetElementVDofs(e_id, dofs);
|
||||
tspec.UseDevice(true);
|
||||
tspec.GetSubVector(dofs, tspec_vals);
|
||||
|
||||
for (int q = 0; q < nqp; q++)
|
||||
for (int i = 0; i < ir.GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(q);
|
||||
const IntegrationPoint &ip = ir.IntPoint(i);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
Jtr(q) = Wideal; // Initialize to identity
|
||||
for (int d = 0; d < 4; d++)
|
||||
{
|
||||
DenseMatrix Jtrcomp_q(Jtrcomp.GetData(d + 4*q), dim, dim);
|
||||
Jtrcomp_q = Wideal; // Initialize to identity
|
||||
}
|
||||
Jtr(i) = Wideal; //Initialize to identity
|
||||
|
||||
if (sizeidx != -1) // Set size
|
||||
if (sizeidx != -1) //Set size
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+sizeidx*ndofs, ndofs);
|
||||
const double min_size = par_vals.Min();
|
||||
MFEM_VERIFY(min_size > 0.0,
|
||||
"Non-positive size propagated in the target definition.");
|
||||
const double size = std::max(shape * par_vals, min_size);
|
||||
Jtr(q).Set(std::pow(size, 1.0/dim), Jtr(q));
|
||||
DenseMatrix Jtrcomp_q(Jtrcomp.GetData(0 + 4*q), dim, dim);
|
||||
Jtrcomp_q = Jtr(q);
|
||||
} // Done size
|
||||
Jtr(i).Set(std::pow(size, 1.0/dim), Jtr(i));
|
||||
} //Done size
|
||||
|
||||
if (target_type == IDEAL_SHAPE_GIVEN_SIZE) { continue; }
|
||||
|
||||
if (aspectratioidx != -1) // Set aspect ratio
|
||||
if (aspectratioidx != -1) //Set aspect ratio
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
@@ -1316,13 +1264,12 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
D_rho(1,1) = pow(rho2,2./3.);
|
||||
D_rho(2,2) = pow(rho3,2./3.);
|
||||
}
|
||||
DenseMatrix Jtrcomp_q(Jtrcomp.GetData(1 + 4*q), dim, dim);
|
||||
Jtrcomp_q = D_rho;
|
||||
DenseMatrix Temp = Jtr(q);
|
||||
Mult(D_rho, Temp, Jtr(q));
|
||||
} // Done aspect ratio
|
||||
|
||||
if (skewidx != -1) // Set skew
|
||||
DenseMatrix Temp = Jtr(i);
|
||||
Mult(D_rho, Temp, Jtr(i));
|
||||
} //Done aspect ratio
|
||||
|
||||
if (skewidx != -1) //Set skew
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
@@ -1358,13 +1305,12 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
|
||||
Q_phi(2,2) = sin(phi13)*sin(chi);
|
||||
}
|
||||
DenseMatrix Jtrcomp_q(Jtrcomp.GetData(2 + 4*q), dim, dim);
|
||||
Jtrcomp_q = Q_phi;
|
||||
DenseMatrix Temp = Jtr(q);
|
||||
Mult(Q_phi, Temp, Jtr(q));
|
||||
} // Done skew
|
||||
|
||||
if (orientationidx != -1) // Set orientation
|
||||
DenseMatrix Temp = Jtr(i);
|
||||
Mult(Q_phi, Temp, Jtr(i));
|
||||
} // done skew
|
||||
|
||||
if (orientationidx != -1) //Set orientation
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
@@ -1389,28 +1335,33 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
const double psi = shape * par_vals_c2;
|
||||
const double beta = shape * par_vals_c3;
|
||||
|
||||
DenseMatrix R_tp(dim), R_beta(dim), R_theta(dim);
|
||||
double ct = cos(theta), st = sin(theta),
|
||||
cp = cos(psi), sp = sin(psi),
|
||||
cb = cos(beta), sb = sin(beta);
|
||||
cp = cos(psi), sp = sin(psi);
|
||||
R_tp(0,0) = ct*sp;
|
||||
R_tp(1,0) = st*sp;
|
||||
R_tp(2,0) = cp;
|
||||
|
||||
R_theta = 0.;
|
||||
R_theta(0,0) = ct*sp;
|
||||
R_theta(1,0) = st*sp;
|
||||
R_theta(2,0) = cp;
|
||||
R_tp(0,1) = -(ct*st*sp*sp)/(1+cp);
|
||||
R_tp(1,1) = cp+(pow(ct,2.)*pow(sp,2.))/(1+cp);
|
||||
R_tp(2,1) = -st*sp;
|
||||
|
||||
R_theta(0,1) = -st*cb + ct*cp*sb;
|
||||
R_theta(1,1) = ct*cb + st*cp*sb;
|
||||
R_theta(2,1) = -sp*sb;
|
||||
R_tp(0,2) = -cp-(pow(st,2.)*pow(sp,2.))/(1+cp);
|
||||
R_tp(1,2) = -R_tp(0,1);
|
||||
R_tp(2,2) = ct*sp;
|
||||
|
||||
R_theta(0,0) = -st*sb - ct*cp*cb;
|
||||
R_theta(1,0) = ct*sb - st*cp*cb;
|
||||
R_theta(2,0) = sp*cb;
|
||||
R_beta = 0.;
|
||||
R_beta(0,0) = 1.;
|
||||
R_beta(1,1) = cos(beta);
|
||||
R_beta(1,2) = -sin(beta);
|
||||
R_beta(2,1) = sin(beta);
|
||||
R_beta(2,2) = cos(beta);
|
||||
|
||||
Mult(R_tp, R_beta, R_theta);
|
||||
}
|
||||
DenseMatrix Jtrcomp_q(Jtrcomp.GetData(3 + 4*q), dim, dim);
|
||||
Jtrcomp_q = R_theta;
|
||||
DenseMatrix Temp = Jtr(q);
|
||||
Mult(R_theta, Temp, Jtr(q));
|
||||
} // Done orientation
|
||||
DenseMatrix Temp = Jtr(i);
|
||||
Mult(R_theta, Temp, Jtr(i));
|
||||
} // done orientation
|
||||
}
|
||||
break;
|
||||
}
|
||||
@@ -1419,353 +1370,6 @@ void DiscreteAdaptTC::ComputeElementTargets(int e_id, const FiniteElement &fe,
|
||||
}
|
||||
}
|
||||
|
||||
void DiscreteAdaptTC::ComputeElementTargetsGradient(const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
IsoparametricTransformation &Tpr,
|
||||
DenseTensor &dJtr) const
|
||||
{
|
||||
MFEM_ASSERT(target_type == IDEAL_SHAPE_UNIT_SIZE || nodes != NULL, "");
|
||||
|
||||
MFEM_VERIFY(tspec_fesv, "No target specifications have been set.");
|
||||
|
||||
dJtr = 0.;
|
||||
const int e_id = Tpr.ElementNo;
|
||||
const FiniteElement *fe = Tpr.GetFE();
|
||||
|
||||
switch (target_type)
|
||||
{
|
||||
case IDEAL_SHAPE_GIVEN_SIZE:
|
||||
case GIVEN_SHAPE_AND_SIZE:
|
||||
{
|
||||
const DenseMatrix &Wideal =
|
||||
Geometries.GetGeomToPerfGeomJac(fe->GetGeomType());
|
||||
const int dim = Wideal.Height(),
|
||||
ndofs = fe->GetDof(),
|
||||
ntspec_dofs = ndofs*ncomp;
|
||||
|
||||
Vector shape(ndofs), tspec_vals(ntspec_dofs), par_vals,
|
||||
par_vals_c1(ndofs), par_vals_c2(ndofs), par_vals_c3(ndofs);
|
||||
|
||||
Array<int> dofs;
|
||||
DenseMatrix dD_rho(dim), dQ_phi(dim), dR_theta(dim);
|
||||
DenseMatrix dQ_phi13(dim), dQ_phichi(dim); // dQ_phi is used for dQ/dphi12 in 3D
|
||||
DenseMatrix dR_psi(dim), dR_beta(dim);
|
||||
tspec_fesv->GetElementVDofs(e_id, dofs);
|
||||
tspec.GetSubVector(dofs, tspec_vals);
|
||||
|
||||
DenseMatrix grad_e_c1(ndofs, dim),
|
||||
grad_e_c2(ndofs, dim),
|
||||
grad_e_c3(ndofs, dim);
|
||||
Vector grad_ptr_c1(grad_e_c1.GetData(), ndofs*dim),
|
||||
grad_ptr_c2(grad_e_c2.GetData(), ndofs*dim),
|
||||
grad_ptr_c3(grad_e_c3.GetData(), ndofs*dim);
|
||||
|
||||
DenseMatrix grad_phys; // This will be (dof x dim, dof).
|
||||
fe->ProjectGrad(*fe, Tpr, grad_phys);
|
||||
|
||||
for (int i = 0; i < ir.GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(i);
|
||||
DenseMatrix Jtrcomp_s(Jtrcomp.GetData(0 + 4*i), dim, dim); // size
|
||||
DenseMatrix Jtrcomp_d(Jtrcomp.GetData(1 + 4*i), dim, dim); // aspect-ratio
|
||||
DenseMatrix Jtrcomp_q(Jtrcomp.GetData(2 + 4*i), dim, dim); // skew
|
||||
DenseMatrix Jtrcomp_r(Jtrcomp.GetData(3 + 4*i), dim, dim); // orientation
|
||||
DenseMatrix work1(dim), work2(dim), work3(dim);
|
||||
|
||||
if (sizeidx != -1) // Set size
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+sizeidx*ndofs, ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals, grad_ptr_c1);
|
||||
Vector grad_q(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q);
|
||||
|
||||
const double min_size = par_vals.Min();
|
||||
MFEM_VERIFY(min_size > 0.0,
|
||||
"Non-positive size propagated in the target definition.");
|
||||
const double size = std::max(shape * par_vals, min_size);
|
||||
double dz_dsize = (1./dim)*pow(size, 1./dim - 1.);
|
||||
|
||||
Mult(Jtrcomp_q, Jtrcomp_d, work1); // Q*D
|
||||
Mult(Jtrcomp_r, work1, work2); // R*Q*D
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = Wideal;
|
||||
work1.Set(dz_dsize, work1); // dz/dsize
|
||||
work1 *= grad_q(d); // dz/dsize*dsize/dx
|
||||
AddMult(work1, work2, dJtr_i); // dz/dx*R*Q*D
|
||||
}
|
||||
} // Done size
|
||||
|
||||
if (target_type == IDEAL_SHAPE_GIVEN_SIZE) { continue; }
|
||||
|
||||
if (aspectratioidx != -1) // Set aspect ratio
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+
|
||||
aspectratioidx*ndofs, ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals, grad_ptr_c1);
|
||||
Vector grad_q(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q);
|
||||
|
||||
const double aspectratio = shape * par_vals;
|
||||
dD_rho = 0.;
|
||||
dD_rho(0,0) = -0.5*pow(aspectratio,-1.5);
|
||||
dD_rho(1,1) = 0.5*pow(aspectratio,-0.5);
|
||||
|
||||
Mult(Jtrcomp_s, Jtrcomp_r, work1); // z*R
|
||||
Mult(work1, Jtrcomp_q, work2); // z*R*Q
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = dD_rho;
|
||||
work1 *= grad_q(d); // work1 = dD/drho*drho/dx
|
||||
AddMult(work2, work1, dJtr_i); // z*R*Q*dD/dx
|
||||
}
|
||||
}
|
||||
else // 3D
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+
|
||||
aspectratioidx*ndofs, ndofs*3);
|
||||
par_vals_c1.SetData(par_vals.GetData());
|
||||
par_vals_c2.SetData(par_vals.GetData()+ndofs);
|
||||
par_vals_c3.SetData(par_vals.GetData()+2*ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals_c1, grad_ptr_c1);
|
||||
grad_phys.Mult(par_vals_c2, grad_ptr_c2);
|
||||
grad_phys.Mult(par_vals_c3, grad_ptr_c3);
|
||||
Vector grad_q1(dim), grad_q2(dim), grad_q3(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q1);
|
||||
grad_e_c2.MultTranspose(shape, grad_q2);
|
||||
grad_e_c3.MultTranspose(shape, grad_q3);
|
||||
|
||||
const double rho1 = shape * par_vals_c1;
|
||||
const double rho2 = shape * par_vals_c2;
|
||||
const double rho3 = shape * par_vals_c3;
|
||||
dD_rho = 0.;
|
||||
dD_rho(0,0) = (2./3.)*pow(rho1,-1./3.);
|
||||
dD_rho(1,1) = (2./3.)*pow(rho2,-1./3.);
|
||||
dD_rho(2,2) = (2./3.)*pow(rho3,-1./3.);
|
||||
|
||||
Mult(Jtrcomp_s, Jtrcomp_r, work1); // z*R
|
||||
Mult(work1, Jtrcomp_q, work2); // z*R*Q
|
||||
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = dD_rho;
|
||||
work1(0,0) *= grad_q1(d);
|
||||
work1(1,2) *= grad_q2(d);
|
||||
work1(2,2) *= grad_q3(d);
|
||||
// work1 = dD/dx = dD/drho1*drho1/dx + dD/drho2*drho2/dx
|
||||
AddMult(work2, work1, dJtr_i); // z*R*Q*dD/dx
|
||||
}
|
||||
}
|
||||
} // Done aspect ratio
|
||||
|
||||
if (skewidx != -1) // Set skew
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+
|
||||
skewidx*ndofs, ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals, grad_ptr_c1);
|
||||
Vector grad_q(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q);
|
||||
|
||||
const double skew = shape * par_vals;
|
||||
|
||||
dQ_phi = 0.;
|
||||
dQ_phi(0,0) = 1.;
|
||||
dQ_phi(0,1) = -sin(skew);
|
||||
dQ_phi(1,1) = cos(skew);
|
||||
|
||||
Mult(Jtrcomp_s, Jtrcomp_r, work2); // z*R
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = dQ_phi;
|
||||
work1 *= grad_q(d); // work1 = dQ/dphi*dphi/dx
|
||||
Mult(work1, Jtrcomp_d, work3); // dQ/dx*D
|
||||
AddMult(work2, work3, dJtr_i); // z*R*dQ/dx*D
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+
|
||||
skewidx*ndofs, ndofs*3);
|
||||
par_vals_c1.SetData(par_vals.GetData());
|
||||
par_vals_c2.SetData(par_vals.GetData()+ndofs);
|
||||
par_vals_c3.SetData(par_vals.GetData()+2*ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals_c1, grad_ptr_c1);
|
||||
grad_phys.Mult(par_vals_c2, grad_ptr_c2);
|
||||
grad_phys.Mult(par_vals_c3, grad_ptr_c3);
|
||||
Vector grad_q1(dim), grad_q2(dim), grad_q3(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q1);
|
||||
grad_e_c2.MultTranspose(shape, grad_q2);
|
||||
grad_e_c3.MultTranspose(shape, grad_q3);
|
||||
|
||||
const double phi12 = shape * par_vals_c1;
|
||||
const double phi13 = shape * par_vals_c2;
|
||||
const double chi = shape * par_vals_c3;
|
||||
|
||||
dQ_phi = 0.;
|
||||
dQ_phi(0,0) = 1.;
|
||||
dQ_phi(0,1) = -sin(phi12);
|
||||
dQ_phi(1,1) = cos(phi12);
|
||||
|
||||
dQ_phi13 = 0.;
|
||||
dQ_phi13(0,2) = -sin(phi13);
|
||||
dQ_phi13(1,2) = cos(phi13)*cos(chi);
|
||||
dQ_phi13(2,2) = cos(phi13)*sin(chi);
|
||||
|
||||
dQ_phichi = 0.;
|
||||
dQ_phichi(1,2) = -sin(phi13)*sin(chi);
|
||||
dQ_phichi(2,2) = sin(phi13)*cos(chi);
|
||||
|
||||
Mult(Jtrcomp_s, Jtrcomp_r, work2); // z*R
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = dQ_phi;
|
||||
work1 *= grad_q1(d); // work1 = dQ/dphi12*dphi12/dx
|
||||
work1.Add(grad_q2(d), dQ_phi13); // + dQ/dphi13*dphi13/dx
|
||||
work1.Add(grad_q3(d), dQ_phichi); // + dQ/dchi*dchi/dx
|
||||
Mult(work1, Jtrcomp_d, work3); // dQ/dx*D
|
||||
AddMult(work2, work3, dJtr_i); // z*R*dQ/dx*D
|
||||
}
|
||||
}
|
||||
} // Done skew
|
||||
|
||||
if (orientationidx != -1) // Set orientation
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+
|
||||
orientationidx*ndofs, ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals, grad_ptr_c1);
|
||||
Vector grad_q(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q);
|
||||
|
||||
const double theta = shape * par_vals;
|
||||
dR_theta(0,0) = -sin(theta);
|
||||
dR_theta(0,1) = -cos(theta);
|
||||
dR_theta(1,0) = cos(theta);
|
||||
dR_theta(1,1) = -sin(theta);
|
||||
|
||||
Mult(Jtrcomp_q, Jtrcomp_d, work1); // Q*D
|
||||
Mult(Jtrcomp_s, work1, work2); // z*Q*D
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = dR_theta;
|
||||
work1 *= grad_q(d); // work1 = dR/dtheta*dtheta/dx
|
||||
AddMult(work1, work2, dJtr_i); // z*dR/dx*Q*D
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
par_vals.SetDataAndSize(tspec_vals.GetData()+
|
||||
orientationidx*ndofs, ndofs*3);
|
||||
par_vals_c1.SetData(par_vals.GetData());
|
||||
par_vals_c2.SetData(par_vals.GetData()+ndofs);
|
||||
par_vals_c3.SetData(par_vals.GetData()+2*ndofs);
|
||||
|
||||
grad_phys.Mult(par_vals_c1, grad_ptr_c1);
|
||||
grad_phys.Mult(par_vals_c2, grad_ptr_c2);
|
||||
grad_phys.Mult(par_vals_c3, grad_ptr_c3);
|
||||
Vector grad_q1(dim), grad_q2(dim), grad_q3(dim);
|
||||
tspec_fes->GetFE(e_id)->CalcShape(ip, shape);
|
||||
grad_e_c1.MultTranspose(shape, grad_q1);
|
||||
grad_e_c2.MultTranspose(shape, grad_q2);
|
||||
grad_e_c3.MultTranspose(shape, grad_q3);
|
||||
|
||||
const double theta = shape * par_vals_c1;
|
||||
const double psi = shape * par_vals_c2;
|
||||
const double beta = shape * par_vals_c3;
|
||||
|
||||
const double ct = cos(theta), st = sin(theta),
|
||||
cp = cos(psi), sp = sin(psi),
|
||||
cb = cos(beta), sb = sin(beta);
|
||||
|
||||
dR_theta = 0.;
|
||||
dR_theta(0,0) = -st*sp;
|
||||
dR_theta(1,0) = ct*sp;
|
||||
dR_theta(2,0) = 0;
|
||||
|
||||
dR_theta(0,1) = -ct*cb - st*cp*sb;
|
||||
dR_theta(1,1) = -st*cb + ct*cp*sb;
|
||||
dR_theta(2,1) = 0.;
|
||||
|
||||
dR_theta(0,0) = -ct*sb + st*cp*cb;
|
||||
dR_theta(1,0) = -st*sb - ct*cp*cb;
|
||||
dR_theta(2,0) = 0.;
|
||||
|
||||
dR_beta = 0.;
|
||||
dR_beta(0,0) = 0.;
|
||||
dR_beta(1,0) = 0.;
|
||||
dR_beta(2,0) = 0.;
|
||||
|
||||
dR_beta(0,1) = st*sb + ct*cp*cb;
|
||||
dR_beta(1,1) = -ct*sb + st*cp*cb;
|
||||
dR_beta(2,1) = -sp*cb;
|
||||
|
||||
dR_beta(0,0) = -st*cb + ct*cp*sb;
|
||||
dR_beta(1,0) = ct*cb + st*cp*sb;
|
||||
dR_beta(2,0) = 0.;
|
||||
|
||||
dR_psi = 0.;
|
||||
dR_psi(0,0) = ct*cp;
|
||||
dR_psi(1,0) = st*cp;
|
||||
dR_psi(2,0) = -sp;
|
||||
|
||||
dR_psi(0,1) = 0. - ct*sp*sb;
|
||||
dR_psi(1,1) = 0. + st*sp*sb;
|
||||
dR_psi(2,1) = -cp*sb;
|
||||
|
||||
dR_psi(0,0) = 0. + ct*sp*cb;
|
||||
dR_psi(1,0) = 0. + st*sp*cb;
|
||||
dR_psi(2,0) = cp*cb;
|
||||
|
||||
Mult(Jtrcomp_q, Jtrcomp_d, work1); // Q*D
|
||||
Mult(Jtrcomp_s, work1, work2); // z*Q*D
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
DenseMatrix &dJtr_i = dJtr(i + d*ir.GetNPoints());
|
||||
work1 = dR_theta;
|
||||
work1 *= grad_q1(d); // work1 = dR/dtheta*dtheta/dx
|
||||
work1.Add(grad_q2(d), dR_psi); // +dR/dpsi*dpsi/dx
|
||||
work1.Add(grad_q3(d), dR_beta); // +dR/dbeta*dbeta/dx
|
||||
AddMult(work1, work2, dJtr_i); // z*dR/dx*Q*D
|
||||
}
|
||||
}
|
||||
} // Done orientation
|
||||
}
|
||||
break;
|
||||
}
|
||||
default:
|
||||
MFEM_ABORT("Incompatible target type for discrete adaptation!");
|
||||
}
|
||||
Jtrcomp.Clear();
|
||||
}
|
||||
|
||||
void DiscreteAdaptTC::UpdateGradientTargetSpecification(const Vector &x,
|
||||
const double dx,
|
||||
bool use_flag)
|
||||
@@ -2095,7 +1699,6 @@ void TMOP_Integrator::AssembleElementVectorExact(const FiniteElement &el,
|
||||
{
|
||||
const int dof = el.GetDof(), dim = el.GetDim();
|
||||
|
||||
DenseMatrix Amat(dim), work1(dim), work2(dim);
|
||||
DSh.SetSize(dof, dim);
|
||||
DS.SetSize(dof, dim);
|
||||
Jrt.SetSize(dim);
|
||||
@@ -2111,15 +1714,14 @@ void TMOP_Integrator::AssembleElementVectorExact(const FiniteElement &el,
|
||||
elvect = 0.0;
|
||||
Vector weights(nqp);
|
||||
DenseTensor Jtr(dim, dim, nqp);
|
||||
DenseTensor dJtr(dim, dim, dim*nqp);
|
||||
targetC->ComputeElementTargets(T.ElementNo, el, *ir, elfun, Jtr);
|
||||
|
||||
// Limited case.
|
||||
DenseMatrix pos0;
|
||||
Vector shape, p, p0, d_vals, grad;
|
||||
shape.SetSize(dof);
|
||||
if (coeff0)
|
||||
{
|
||||
shape.SetSize(dof);
|
||||
p.SetSize(dim);
|
||||
p0.SetSize(dim);
|
||||
pos0.SetSize(dof, dim);
|
||||
@@ -2139,23 +1741,16 @@ void TMOP_Integrator::AssembleElementVectorExact(const FiniteElement &el,
|
||||
|
||||
// Define ref->physical transformation, when a Coefficient is specified.
|
||||
IsoparametricTransformation *Tpr = NULL;
|
||||
if (coeff1 || coeff0 || zeta || exact_action)
|
||||
if (coeff1 || coeff0 || zeta)
|
||||
{
|
||||
Tpr = new IsoparametricTransformation;
|
||||
Tpr->SetFE(&el);
|
||||
Tpr->ElementNo = T.ElementNo;
|
||||
Tpr->ElementType = ElementTransformation::ELEMENT;
|
||||
Tpr->Attribute = T.Attribute;
|
||||
Tpr->GetPointMat().Transpose(PMatI); // PointMat = PMatI^T
|
||||
if (exact_action)
|
||||
{
|
||||
targetC->ComputeElementTargetsGradient(*ir, elfun, *Tpr, dJtr);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
Vector d_detW_dx(dim);
|
||||
Vector d_Winv_dx(dim);
|
||||
|
||||
for (int q = 0; q < nqp; q++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(q);
|
||||
@@ -2174,44 +1769,13 @@ void TMOP_Integrator::AssembleElementVectorExact(const FiniteElement &el,
|
||||
if (coeff1) { weight_m *= coeff1->Eval(*Tpr, ip); }
|
||||
|
||||
P *= weight_m;
|
||||
AddMultABt(DS, P, PMatO); // w_q det(W) dmu/dx : dA/dx Winv
|
||||
AddMultABt(DS, P, PMatO);
|
||||
|
||||
if (exact_action)
|
||||
{
|
||||
el.CalcShape(ip, shape);
|
||||
// Derivatives of adaptivity-based targets.
|
||||
// First term: w_q d*(Det W)/dx * mu(T)
|
||||
// d(Det W)/dx = det(W)*Tr[Winv*dW/dx]
|
||||
DenseMatrix dwdx(dim);
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
const DenseMatrix &dJtr_q = dJtr(q + d*ir->GetNPoints());
|
||||
Mult(Jrt, dJtr_q, dwdx );
|
||||
d_detW_dx(d) = dwdx.Trace();
|
||||
}
|
||||
d_detW_dx *= weight_m*metric->EvalW(Jpt); // *[w_q*det(W)]*mu(T)
|
||||
|
||||
// Second term: w_q det(W) dmu/dx : AdWinv/dx
|
||||
// dWinv/dx = -Winv*dW/dx*Winv
|
||||
MultAtB(PMatI, DSh, Amat);
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
const DenseMatrix &dJtr_q = dJtr(q + d*nqp);
|
||||
Mult(Jrt, dJtr_q, work1); // Winv*dw/dx
|
||||
Mult(work1, Jrt, work2); // Winv*dw/dx*Winv
|
||||
Mult(Amat, work2, work1); // A*Winv*dw/dx*Winv
|
||||
MultAtB(P, work1, work2); // dmu/dT^T*A*Winv*dw/dx*Winv
|
||||
d_Winv_dx(d) = work2.Trace(); // Tr[dmu/dT : AWinv*dw/dx*Winv]
|
||||
}
|
||||
d_Winv_dx *= -weight_m; // Include (-) factor as well
|
||||
|
||||
d_detW_dx += d_Winv_dx;
|
||||
AddMultVWt(shape, d_detW_dx, PMatO);
|
||||
}
|
||||
// TODO: derivatives of adaptivity-based targets.
|
||||
|
||||
if (coeff0)
|
||||
{
|
||||
if (!exact_action) { el.CalcShape(ip, shape); }
|
||||
el.CalcShape(ip, shape);
|
||||
PMatI.MultTranspose(shape, p);
|
||||
pos0.MultTranspose(shape, p0);
|
||||
lim_func->Eval_d1(p, p0, d_vals(q), grad);
|
||||
@@ -2652,8 +2216,7 @@ void TMOP_Integrator::ComputeNormalizationEnergies(const GridFunction &x,
|
||||
Jpt.SetSize(dim);
|
||||
|
||||
const IntegrationRule *ir = EnergyIntegrationRule(*fe);
|
||||
const int nqp = ir->GetNPoints();
|
||||
DenseTensor Jtr(dim, dim, nqp);
|
||||
DenseTensor Jtr(dim, dim, ir->GetNPoints());
|
||||
|
||||
metric_energy = 0.0;
|
||||
lim_energy = 0.0;
|
||||
@@ -2666,12 +2229,12 @@ void TMOP_Integrator::ComputeNormalizationEnergies(const GridFunction &x,
|
||||
|
||||
targetC->ComputeElementTargets(i, *fe, *ir, x_vals, Jtr);
|
||||
|
||||
for (int q = 0; q < nqp; q++)
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(q);
|
||||
metric->SetTargetJacobian(Jtr(q));
|
||||
CalcInverse(Jtr(q), Jrt);
|
||||
const double weight = ip.weight * Jtr(q).Det();
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
metric->SetTargetJacobian(Jtr(i));
|
||||
CalcInverse(Jtr(i), Jrt);
|
||||
const double weight = ip.weight * Jtr(i).Det();
|
||||
|
||||
fe->CalcDShape(ip, DSh);
|
||||
MultAtB(PMatI, DSh, Jpr);
|
||||
|
||||
+20
-59
@@ -162,6 +162,21 @@ public:
|
||||
{ MFEM_ABORT("Not implemented"); }
|
||||
};
|
||||
|
||||
/// Shape+Size metric, 2D.
|
||||
class TMOP_Metric_SS2D : public TMOP_QualityMetric
|
||||
{
|
||||
public:
|
||||
// W = 0.5 (1 - cos(theta_Jpr - theta_Jtr)).
|
||||
virtual double EvalW(const DenseMatrix &Jpt) const;
|
||||
|
||||
virtual void EvalP(const DenseMatrix &Jpt, DenseMatrix &P) const
|
||||
{ MFEM_ABORT("Not implemented"); }
|
||||
|
||||
virtual void AssembleH(const DenseMatrix &Jpt, const DenseMatrix &DS,
|
||||
const double weight, DenseMatrix &A) const
|
||||
{ MFEM_ABORT("Not implemented"); }
|
||||
};
|
||||
|
||||
/// Shape, ideal barrier metric, 2D
|
||||
class TMOP_Metric_002 : public TMOP_QualityMetric
|
||||
{
|
||||
@@ -316,21 +331,6 @@ public:
|
||||
|
||||
};
|
||||
|
||||
/// Shape & orientation metric, 2D.
|
||||
class TMOP_Metric_085 : public TMOP_QualityMetric
|
||||
{
|
||||
public:
|
||||
// W = |T-T'|^2, where T'= |T|*I/sqrt(2).
|
||||
virtual double EvalW(const DenseMatrix &Jpt) const;
|
||||
|
||||
virtual void EvalP(const DenseMatrix &Jpt, DenseMatrix &P) const
|
||||
{ MFEM_ABORT("Not implemented"); }
|
||||
|
||||
virtual void AssembleH(const DenseMatrix &Jpt, const DenseMatrix &DS,
|
||||
const double weight, DenseMatrix &A) const
|
||||
{ MFEM_ABORT("Not implemented"); }
|
||||
};
|
||||
|
||||
/// Untangling metric, 2D
|
||||
class TMOP_Metric_211 : public TMOP_QualityMetric
|
||||
{
|
||||
@@ -677,25 +677,6 @@ public:
|
||||
const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
DenseTensor &Jtr) const;
|
||||
|
||||
virtual void ComputeElementTargetsGradient(const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
IsoparametricTransformation &Tpr,
|
||||
DenseTensor &dJtr) const;
|
||||
};
|
||||
|
||||
class TMOPMatrixCoefficient : public MatrixCoefficient
|
||||
{
|
||||
public:
|
||||
explicit TMOPMatrixCoefficient(int dim) : MatrixCoefficient(dim, dim) { }
|
||||
|
||||
/** @brief Evaluate the derivative of the matrix coefficient with respect to
|
||||
@a comp in the element described by @a T at the point @a ip, storing the
|
||||
result in @a K. */
|
||||
virtual void EvalGrad(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip, int comp) = 0;
|
||||
|
||||
virtual ~TMOPMatrixCoefficient() { }
|
||||
};
|
||||
|
||||
class AnalyticAdaptTC : public TargetConstructor
|
||||
@@ -704,7 +685,7 @@ protected:
|
||||
// Analytic target specification.
|
||||
Coefficient *scalar_tspec;
|
||||
VectorCoefficient *vector_tspec;
|
||||
TMOPMatrixCoefficient *matrix_tspec;
|
||||
MatrixCoefficient *matrix_tspec;
|
||||
|
||||
public:
|
||||
AnalyticAdaptTC(TargetType ttype)
|
||||
@@ -713,7 +694,7 @@ public:
|
||||
|
||||
virtual void SetAnalyticTargetSpec(Coefficient *sspec,
|
||||
VectorCoefficient *vspec,
|
||||
TMOPMatrixCoefficient *mspec);
|
||||
MatrixCoefficient *mspec);
|
||||
|
||||
/** @brief Given an element and quadrature rule, computes ref->target
|
||||
transformation Jacobians for each quadrature point in the element.
|
||||
@@ -722,11 +703,6 @@ public:
|
||||
const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
DenseTensor &Jtr) const;
|
||||
|
||||
virtual void ComputeElementTargetsGradient(const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
IsoparametricTransformation &Tpr,
|
||||
DenseTensor &dJtr) const;
|
||||
};
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
@@ -748,17 +724,13 @@ protected:
|
||||
// eta1(x+h,y), eta2(x+h,y) ... etan(x+h,y), eta1(x,y+h), eta2(x,y+h) ...
|
||||
// same for tspec_pert2h and tspec_pertmix.
|
||||
|
||||
// Components of Target Jacobian at each quadrature point of an element. This
|
||||
// is required for computation of the derivative using chain rule.
|
||||
mutable DenseTensor Jtrcomp;
|
||||
|
||||
// Note: do not use the Nodes of this space as they may not be on the
|
||||
// positions corresponding to the values of tspec.
|
||||
const FiniteElementSpace *tspec_fes;
|
||||
const FiniteElementSpace *tspec_fesv;
|
||||
|
||||
// These flags can be used by outside functions to avoid recomputing the
|
||||
// tspec and tspec_perth fields again on the same mesh.
|
||||
// These flags can be used by outside functions to avoid recomputing
|
||||
// the tspec and tspec_perth fields again on the same mesh.
|
||||
bool good_tspec, good_tspec_grad, good_tspec_hess;
|
||||
|
||||
// Evaluation of the discrete target specification on different meshes.
|
||||
@@ -865,11 +837,6 @@ public:
|
||||
const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
DenseTensor &Jtr) const;
|
||||
|
||||
virtual void ComputeElementTargetsGradient(const IntegrationRule &ir,
|
||||
const Vector &elfun,
|
||||
IsoparametricTransformation &Tpr,
|
||||
DenseTensor &dJtr) const;
|
||||
};
|
||||
|
||||
class TMOPNewtonSolver;
|
||||
@@ -922,9 +889,6 @@ protected:
|
||||
// Specifies that ComputeElementTargets is being called by a FD function.
|
||||
// It's used to skip terms that have exact derivative calculations.
|
||||
bool fd_call_flag;
|
||||
// Compute the exact action of the Integrator (includes derivative of the
|
||||
// target with respect to spatial position)
|
||||
bool exact_action;
|
||||
|
||||
Array <Vector *> ElemDer; //f'(x)
|
||||
Array <Vector *> ElemPertEnergy; //f(x+h)
|
||||
@@ -1014,7 +978,7 @@ public:
|
||||
lim_dist(NULL), lim_func(NULL), lim_normal(1.0),
|
||||
zeta_0(NULL), zeta(NULL), coeff_zeta(NULL), adapt_eval(NULL),
|
||||
discr_tc(dynamic_cast<DiscreteAdaptTC *>(tc)),
|
||||
fdflag(false), dxscale(1.0e3), fd_call_flag(false), exact_action(false)
|
||||
fdflag(false), dxscale(1.0e3), fd_call_flag(false)
|
||||
{ }
|
||||
|
||||
~TMOP_Integrator();
|
||||
@@ -1102,9 +1066,6 @@ public:
|
||||
void SetFDhScale(double _dxscale) { dxscale = _dxscale; }
|
||||
bool GetFDFlag() const { return fdflag; }
|
||||
double GetFDh() const { return dx; }
|
||||
|
||||
/** @brief Flag to control if exact action of Integration is effected. */
|
||||
void SetExactActionFlag(bool flag_) { exact_action = flag_; }
|
||||
};
|
||||
|
||||
class TMOPComboIntegrator : public NonlinearFormIntegrator
|
||||
|
||||
+146
-99
@@ -33,10 +33,11 @@ void AdvectorCG::ComputeAtNewPosition(const Vector &new_nodes,
|
||||
const int pnt_cnt = new_field.Size()/ncomp;
|
||||
|
||||
new_field = field0;
|
||||
|
||||
new_field.HostReadWrite();
|
||||
Vector new_field_temp;
|
||||
for (int i = 0; i < ncomp; i++)
|
||||
{
|
||||
Vector new_field_temp(new_field.GetData()+i*pnt_cnt, pnt_cnt);
|
||||
new_field_temp.MakeRef(new_field, i*pnt_cnt, pnt_cnt);
|
||||
ComputeAtNewPositionScalar(new_nodes, new_field_temp);
|
||||
}
|
||||
|
||||
@@ -94,6 +95,7 @@ void AdvectorCG::ComputeAtNewPositionScalar(const Vector &new_nodes,
|
||||
double v_max = 0.0;
|
||||
const int s = new_field.Size();
|
||||
|
||||
u.HostReadWrite();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
double vel = 0.;
|
||||
@@ -149,6 +151,7 @@ void AdvectorCG::ComputeAtNewPositionScalar(const Vector &new_nodes,
|
||||
#endif
|
||||
|
||||
// Trim the overshoots and undershoots.
|
||||
new_field.HostReadWrite();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
if (new_field(i) < glob_minv) { new_field(i) = glob_minv; }
|
||||
@@ -353,59 +356,20 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
|
||||
energy_in = nlf->GetEnergy(x);
|
||||
}
|
||||
|
||||
const bool have_b = (b.Size() == Height());
|
||||
|
||||
const int NE = fes->GetMesh()->GetNE(), dim = fes->GetFE(0)->GetDim(),
|
||||
dof = fes->GetFE(0)->GetDof(), nsp = ir.GetNPoints();
|
||||
Array<int> xdofs(dof * dim);
|
||||
DenseMatrix Jpr(dim), dshape(dof, dim), pos(dof, dim);
|
||||
Vector posV(pos.Data(), dof * dim);
|
||||
Vector x_out_loc(fes->GetVSize());
|
||||
|
||||
if (serial)
|
||||
{
|
||||
const SparseMatrix *cP = fes->GetConformingProlongation();
|
||||
if (!cP) { x_out_loc = x; }
|
||||
else { cP->Mult(x, x_out_loc); }
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
else
|
||||
{
|
||||
fes->GetProlongationMatrix()->Mult(x, x_out_loc);
|
||||
}
|
||||
#endif
|
||||
|
||||
double min_detJ = infinity();
|
||||
for (int i = 0; i < NE; i++)
|
||||
{
|
||||
fes->GetElementVDofs(i, xdofs);
|
||||
x_out_loc.GetSubVector(xdofs, posV);
|
||||
|
||||
for (int j = 0; j < nsp; j++)
|
||||
{
|
||||
fes->GetFE(i)->CalcDShape(ir.IntPoint(j), dshape);
|
||||
MultAtB(pos, dshape, Jpr);
|
||||
min_detJ = std::min(min_detJ, Jpr.Det());
|
||||
}
|
||||
}
|
||||
double min_detJ_all = min_detJ;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
MPI_Allreduce(&min_detJ, &min_detJ_all, 1, MPI_DOUBLE, MPI_MIN,
|
||||
p_nlf->ParFESpace()->GetComm());
|
||||
}
|
||||
#endif
|
||||
bool untangling = false;
|
||||
if (min_detJ_all <= 0) { untangling = true; }
|
||||
|
||||
const bool have_b = (b.Size() == Height());
|
||||
|
||||
Vector x_out(x.Size());
|
||||
Vector x_out(x.Size()), x_out_loc(fes->GetVSize());
|
||||
bool x_out_ok = false;
|
||||
double scale = 1.0, energy_out = 0.0;
|
||||
double norm0 = Norm(r);
|
||||
|
||||
const double detJ_factor = (solver_type == 1) ? 0.25 : 0.5;
|
||||
|
||||
// Decreases the scaling of the update until the new mesh is valid.
|
||||
for (int i = 0; i < 12; i++)
|
||||
{
|
||||
add(x, -scale, c, x_out);
|
||||
@@ -423,39 +387,35 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
|
||||
}
|
||||
#endif
|
||||
|
||||
// Check det(Jpr) > 0.
|
||||
if (!untangling)
|
||||
int jac_ok = 1;
|
||||
for (int i = 0; i < NE; i++)
|
||||
{
|
||||
int jac_ok = 1;
|
||||
for (int i = 0; i < NE; i++)
|
||||
fes->GetElementVDofs(i, xdofs);
|
||||
x_out_loc.GetSubVector(xdofs, posV);
|
||||
for (int j = 0; j < nsp; j++)
|
||||
{
|
||||
fes->GetElementVDofs(i, xdofs);
|
||||
x_out_loc.GetSubVector(xdofs, posV);
|
||||
for (int j = 0; j < nsp; j++)
|
||||
{
|
||||
fes->GetFE(i)->CalcDShape(ir.IntPoint(j), dshape);
|
||||
MultAtB(pos, dshape, Jpr);
|
||||
if (Jpr.Det() <= 0.0) { jac_ok = 0; goto break2; }
|
||||
}
|
||||
fes->GetFE(i)->CalcDShape(ir.IntPoint(j), dshape);
|
||||
MultAtB(pos, dshape, Jpr);
|
||||
if (Jpr.Det() <= 0.0) { jac_ok = 0; goto break2; }
|
||||
}
|
||||
}
|
||||
|
||||
break2:
|
||||
int jac_ok_all = jac_ok;
|
||||
break2:
|
||||
int jac_ok_all = jac_ok;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
MPI_Allreduce(&jac_ok, &jac_ok_all, 1, MPI_INT, MPI_LAND,
|
||||
p_nlf->ParFESpace()->GetComm());
|
||||
}
|
||||
if (parallel)
|
||||
{
|
||||
MPI_Allreduce(&jac_ok, &jac_ok_all, 1, MPI_INT, MPI_LAND,
|
||||
p_nlf->ParFESpace()->GetComm());
|
||||
}
|
||||
#endif
|
||||
|
||||
if (jac_ok_all == 0)
|
||||
{
|
||||
if (print_level >= 0)
|
||||
{ mfem::out << "Scale = " << scale << " Neg det(J) found.\n"; }
|
||||
scale *= detJ_factor; continue;
|
||||
}
|
||||
} // endif(!untangling)
|
||||
if (jac_ok_all == 0)
|
||||
{
|
||||
if (print_level >= 0)
|
||||
{ mfem::out << "Scale = " << scale << " Neg det(J) found.\n"; }
|
||||
scale *= 0.5; continue;
|
||||
}
|
||||
|
||||
ProcessNewState(x_out);
|
||||
if (serial)
|
||||
@@ -468,37 +428,25 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
|
||||
energy_out = p_nlf->GetParGridFunctionEnergy(x_out_loc);
|
||||
}
|
||||
#endif
|
||||
|
||||
if (untangling)
|
||||
if (energy_out > 1.2*energy_in || std::isnan(energy_out) != 0)
|
||||
{
|
||||
if (energy_out > energy_in || std::isnan(energy_out) != 0)
|
||||
{
|
||||
scale *= 0.5;
|
||||
}
|
||||
else { x_out_ok = true; break; }
|
||||
if (print_level >= 0)
|
||||
{ mfem::out << "Scale = " << scale << " Increasing energy.\n"; }
|
||||
scale *= 0.5; continue;
|
||||
}
|
||||
else
|
||||
|
||||
oper->Mult(x_out, r);
|
||||
if (have_b) { r -= b; }
|
||||
double norm = Norm(r);
|
||||
|
||||
if (norm > 1.2*norm0)
|
||||
{
|
||||
if (energy_out > 1.2*energy_in || std::isnan(energy_out) != 0)
|
||||
{
|
||||
if (print_level >= 0)
|
||||
{ mfem::out << "Scale = " << scale << " Increasing energy.\n"; }
|
||||
scale *= 0.5; continue;
|
||||
}
|
||||
|
||||
oper->Mult(x_out, r);
|
||||
if (have_b) { r -= b; }
|
||||
double norm = Norm(r);
|
||||
|
||||
if (norm > 1.2*norm0)
|
||||
{
|
||||
if (print_level >= 0)
|
||||
{ mfem::out << "Scale = " << scale << " Norm increased.\n"; }
|
||||
scale *= 0.5; continue;
|
||||
}
|
||||
else { x_out_ok = true; break; }
|
||||
} // endif (untangling)
|
||||
} // enddo (i)
|
||||
if (print_level >= 0)
|
||||
{ mfem::out << "Scale = " << scale << " Norm increased.\n"; }
|
||||
scale *= 0.5; continue;
|
||||
}
|
||||
else { x_out_ok = true; break; }
|
||||
}
|
||||
|
||||
if (print_level >= 0)
|
||||
{
|
||||
@@ -625,6 +573,105 @@ void TMOPNewtonSolver::UpdateDiscreteTC(const TMOP_Integrator &ti,
|
||||
}
|
||||
}
|
||||
|
||||
double TMOPDescentNewtonSolver::ComputeScalingFactor(const Vector &x,
|
||||
const Vector &b) const
|
||||
{
|
||||
const FiniteElementSpace *fes = NULL;
|
||||
double energy_in = 0.0;
|
||||
#ifdef MFEM_USE_MPI
|
||||
const ParNonlinearForm *p_nlf = dynamic_cast<const ParNonlinearForm *>(oper);
|
||||
MFEM_VERIFY(!(parallel && p_nlf == NULL), "Invalid Operator subclass.");
|
||||
if (parallel)
|
||||
{
|
||||
fes = p_nlf->FESpace();
|
||||
energy_in = p_nlf->GetEnergy(x);
|
||||
}
|
||||
#endif
|
||||
const bool serial = !parallel;
|
||||
const NonlinearForm *nlf = dynamic_cast<const NonlinearForm *>(oper);
|
||||
MFEM_VERIFY(!(serial && nlf == NULL), "Invalid Operator subclass.");
|
||||
if (serial)
|
||||
{
|
||||
fes = nlf->FESpace();
|
||||
energy_in = nlf->GetEnergy(x);
|
||||
}
|
||||
|
||||
const int NE = fes->GetMesh()->GetNE(), dim = fes->GetFE(0)->GetDim(),
|
||||
dof = fes->GetFE(0)->GetDof(), nsp = ir.GetNPoints();
|
||||
Array<int> xdofs(dof * dim);
|
||||
DenseMatrix Jpr(dim), dshape(dof, dim), pos(dof, dim);
|
||||
Vector posV(pos.Data(), dof * dim);
|
||||
Vector x_loc(fes->GetVSize());
|
||||
|
||||
double min_detJ = infinity();
|
||||
for (int i = 0; i < NE; i++)
|
||||
{
|
||||
fes->GetElementVDofs(i, xdofs);
|
||||
// TODO x_loc doesn't have valid values here!
|
||||
MFEM_ABORT("This function has to be fixed!");
|
||||
x_loc.GetSubVector(xdofs, posV);
|
||||
|
||||
for (int j = 0; j < nsp; j++)
|
||||
{
|
||||
fes->GetFE(i)->CalcDShape(ir.IntPoint(j), dshape);
|
||||
MultAtB(pos, dshape, Jpr);
|
||||
min_detJ = std::min(min_detJ, Jpr.Det());
|
||||
}
|
||||
}
|
||||
double min_detJ_all = min_detJ;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
MPI_Allreduce(&min_detJ, &min_detJ_all, 1, MPI_DOUBLE, MPI_MIN,
|
||||
p_nlf->ParFESpace()->GetComm());
|
||||
}
|
||||
#endif
|
||||
if (print_level >= 0)
|
||||
{
|
||||
mfem::out << "Minimum det(J) = " << min_detJ_all << '\n';
|
||||
}
|
||||
|
||||
Vector x_out(x.Size());
|
||||
bool x_out_ok = false;
|
||||
double scale = 1.0, energy_out = 0.0;
|
||||
|
||||
for (int i = 0; i < 7; i++)
|
||||
{
|
||||
add(x, -scale, c, x_out);
|
||||
if (serial)
|
||||
{
|
||||
const SparseMatrix *cP = fes->GetConformingProlongation();
|
||||
if (!cP) { x_loc = x_out; }
|
||||
else { cP->Mult(x_out,x_loc); }
|
||||
energy_out = nlf->GetGridFunctionEnergy(x_loc);
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
else
|
||||
{
|
||||
fes->GetProlongationMatrix()->Mult(x_out, x_loc);
|
||||
energy_out = p_nlf->GetParGridFunctionEnergy(x_loc);
|
||||
}
|
||||
#endif
|
||||
|
||||
if (energy_out > energy_in || std::isnan(energy_out) != 0)
|
||||
{
|
||||
scale *= 0.5;
|
||||
}
|
||||
else { x_out_ok = true; break; }
|
||||
}
|
||||
|
||||
if (print_level >= 0)
|
||||
{
|
||||
mfem::out << "Energy decrease: "
|
||||
<< (energy_in - energy_out) / energy_in * 100.0
|
||||
<< "% with " << scale << " scaling.\n";
|
||||
}
|
||||
|
||||
if (x_out_ok == false) { return 0.0; }
|
||||
|
||||
return scale;
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
// Metric values are visualized by creating an L2 finite element functions and
|
||||
// computing the metric values at the nodes.
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user