Compare commits

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Author SHA1 Message Date
Tom Stitt 0e8625cf89 add optional MemoryType to the SparseMatrix copy-ctor 2020-07-24 09:13:21 -07:00
Tom Stitt 3f7a432e74 Cherry-picking changes on top of our current hash.
There are things that hurt performance in laster mfem@master commits,
not sure what yet.

This includes:
- feature/artv3/cusparse-Spmv
- feature/tomstitt/temp-mem-type
- patches to tmop.cpp and tmop_tools.cpp to address memory issues
- patch to mem_manager/device to use mfem's default allcator instead of
the host umpire one
2020-07-22 15:51:04 -07:00
Tom Stitt a57fd02a4c Use flattened FORALL instead of FORALL_2D. 2020-06-23 12:11:33 -07:00
Tom Stitt 2ae97ff2da Converts PADiffusionSetup3D and QuadratureInterpolator::Eval3D
kernels from 1 element per thread to 1 qpt/dof per thread for
better performance when offloading (there are not enough units
of work with 1 element/thread)
2020-06-22 14:42:48 -07:00
Arturo Vargas 2b712207c6 fix merge conflicts 2020-06-22 14:29:28 -07:00
Arturo Vargas 2930c1477f promove temp vector class member 2020-06-18 13:35:11 -07:00
Arturo Vargas b3ee631aa6 tmop_tools 2020-05-14 14:33:32 -07:00
Arturo Vargas daf2fdecec use tmop_tools from master 2020-05-14 14:24:52 -07:00
Arturo Vargas d3a0d0a181 Merge branch 'master' into feature/apps/mesh-helper-tmop-ea 2020-05-14 14:19:13 -07:00
Arturo Vargas 07853b9c62 add missing host reads to tmop 2020-05-09 21:41:26 -07:00
Arturo Vargas 49a31c0cf7 Merge branch 'yohann/mass-emat' into feature/apps/mesh-helper-tmop-ea 2020-05-01 10:17:42 -07:00
Arturo Vargas ba9b251007 Merge branch 'master' into feature/apps/mesh-helper-tmop-ea 2020-05-01 10:13:46 -07:00
Arturo Vargas 5ce2fa9ab9 fix free 2020-04-30 18:06:29 -07:00
Arturo Vargas 78c93de6ce Merge branch 'gpu/artv3/batch-lu' into feature/apps/mesh-helper-tmop-ea 2020-04-30 13:09:53 -07:00
Arturo Vargas 3d4aa157cb testing super code 2020-04-28 16:54:23 -07:00
Tomov a7f1c177c5 Fixed a parallel communication bug in tmop's AdvectorCG. 2020-03-30 22:29:51 -07:00
Arturo Vargas 2d4e3cf77e minor helper functions 2020-03-24 14:11:37 -07:00
274 changed files with 15180 additions and 45350 deletions
+8 -10
View File
@@ -15,10 +15,8 @@ install:
- msmpisdk.msi /passive
- set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
# Install METIS, use a mirror because the original source server is not always
# up. Original url:
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
# Install METIS
- ps: Start-FileDownload 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz'
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
- cd metis-5.1.0
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
@@ -28,17 +26,17 @@ install:
- cd ..
# Install hypre
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/V2-10-0b.tar.gz'
- 7z x V2-10-0b.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2-10-0b
- cmake -H. -Bbuild -DHYPRE_USING_FEI=OFF -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
- cmake --build build
- cmake --build build --target install
- cd ../..
- cd ..
# MFEM
before_build:
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2-10-0b\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2-10-0b\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
build_script:
+1 -13
View File
@@ -122,7 +122,7 @@ examples/sundials/ex16-final.*
examples/sundials/Example16*
examples/petsc/ex[1-69]p
examples/petsc/ex1[0-1]p
examples/petsc/ex10p
examples/petsc/mesh.*
examples/petsc/sol.*
@@ -137,7 +137,6 @@ examples/petsc/Example9*
examples/petsc/deformed.*
examples/petsc/velocity.*
examples/petsc/elastic_energy.*
examples/petsc/mode_*
examples/pumi/ex1
examples/pumi/ex[126]p
@@ -175,7 +174,6 @@ miniapps/meshing/mesh-optimizer
miniapps/meshing/pmesh-optimizer
miniapps/meshing/minimal-surface
miniapps/meshing/pminimal-surface
miniapps/meshing/polar-nc
miniapps/meshing/mobius-strip.mesh
miniapps/meshing/klein-bottle.mesh
@@ -188,7 +186,6 @@ miniapps/meshing/extruder.mesh
miniapps/meshing/trimmer.mesh
miniapps/meshing/optimized*
miniapps/meshing/perturbed*
miniapps/meshing/polar-nc.mesh
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -235,7 +232,6 @@ miniapps/nurbs/mode_*
miniapps/nurbs/Example1*
miniapps/gslib/field-diff
miniapps/gslib/field-interp
miniapps/gslib/findpts
miniapps/gslib/pfindpts
@@ -247,9 +243,6 @@ miniapps/navier/navier_3dfoc
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
miniapps/adjoint/cvsRoberts_ASAi_dns
miniapps/adjoint/adjoint_advection_diffusion
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
@@ -262,10 +255,5 @@ tests/scripts/*.err
tests/scripts/*.out
tests/scripts/*.msg
# Other tests
tests/convergence/rates
tests/convergence/prates
tests/par-mesh-format/ex1p
# VPATH builds
build-*/*
+1 -17
View File
@@ -71,8 +71,6 @@ stages:
- build
- test
- deallocate
- lassen_build
- lassen_test
- baseline_check
- baseline_publish
@@ -81,11 +79,7 @@ stages:
# TODO: updating tests and tpls is not necessary anymore since pipelines are
# now using unique directories so repo are never shared with another pipeline.
# This is not memory efficient (we keep a lot of data), hence this reminder.
# Setup
setup:
tags:
- shell
- quartz
.setup:
stage: setup
variables:
GIT_STRATEGY: none
@@ -106,15 +100,6 @@ setup:
before_script:
- module load gcc/6.1.0
# On lassen
.with_gcc_8_3_1:
variables:
TOOLCHAIN: gcc_8_3_1
CXX: g++
CC: gcc
before_script:
- module load gcc/8.3.1
.with_gcc_4_9_3:
variables:
TOOLCHAIN: gcc_4_9_3
@@ -305,4 +290,3 @@ setup:
# The list on jobs is defined in machine-specific files.
include:
- local: .gitlab/quartz.yml
- local: .gitlab/lassen.yml
-57
View File
@@ -1,57 +0,0 @@
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# GitLab pipelines configurations for the Lassen machine at LLNL
.on_lassen:
tags:
- shell
- lassen
variables:
PLAT: lassen
# Build MFEM
build_mfem_ser_lassen:
extends: [.with_gcc_8_3_1, .on_lassen]
needs: [setup]
stage: lassen_build
script:
- mkdir -p ${BUILD_PATH}
- cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
- lalloc 1 -W 5 -q pdebug make -j cuda CUDA_ARCH=sm_70
build_mfem_debug_ser_lassen:
extends: [.with_gcc_8_3_1, .on_lassen]
needs: [setup]
stage: lassen_build
script:
- mkdir -p ${BUILD_PATH}
- cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
- lalloc 1 -W 5 -q pdebug make -j cuda MFEM_DEBUG="YES" CUDA_ARCH=sm_70
# Sanity check
sanitycheck_mfem_ser_lassen:
extends: [.with_gcc_8_3_1, .on_lassen]
stage: lassen_test
needs: [build_mfem_ser_lassen]
script:
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
- lalloc 1 -W 15 -q pdebug make -j test
sanitycheck_mfem_debug_ser_lassen:
extends: [.with_gcc_8_3_1, .on_lassen]
stage: lassen_test
needs: [build_mfem_debug_ser_lassen]
script:
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
- lalloc 1 -W 30 -q pdebug make -j test
+4
View File
@@ -22,6 +22,10 @@
MAKE_PAR: 6
BASELINE_PAR: 18
# Setup
setup_quartz:
extends: [.setup, .on_quartz]
# Allocate
allocate_quartz:
variables:
+33 -98
View File
@@ -11,20 +11,11 @@
language: cpp
os: linux
dist: bionic
stages:
- checks
- tests
- optional
env:
global:
- HYPRE_ARCHIVE=v2.19.0.tar.gz
HYPRE_URL=https://github.com/hypre-space/hypre/archive/$HYPRE_ARCHIVE
HYPRE_TOP_DIR=hypre-2.19.0
jobs:
include:
@@ -37,7 +28,6 @@ jobs:
- stage: checks
os: linux
dist: xenial
name: "code-style"
addons:
apt:
@@ -56,6 +46,9 @@ jobs:
packages:
- doxygen
- graphviz
- mpich
- libmpich-dev
env: MPI=YES
script:
- cd ${TRAVIS_BUILD_DIR}
- cd tests/scripts
@@ -70,24 +63,13 @@ jobs:
- mpich
- libmpich-dev
env: MPI=YES
before_script:
script:
- cd ${TRAVIS_BUILD_DIR}
- mpicxx -v
- make config MFEM_USE_MPI=YES MFEM_MPI_NP=2
- make all -j3
- make test-noclean
script:
- cd tests/scripts
- ./runtest gitignore
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
# ========================
# Optional Checks/Tests
@@ -96,7 +78,6 @@ jobs:
- stage: optional
name: "branch-history"
if: branch != next
# need full git history for the binary/big files check
git:
depth: false
@@ -125,8 +106,6 @@ jobs:
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=check
cache:
ccache: true
- os: linux
compiler: gcc
@@ -135,8 +114,6 @@ jobs:
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=test
cache:
ccache: true
- os: linux
compiler: gcc
@@ -160,9 +137,9 @@ jobs:
MFEM_TEST_TARGET=check
NPROCS=2
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
@@ -191,9 +168,9 @@ jobs:
MFEM_TEST_TARGET=test
NPROCS=2
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
@@ -216,16 +193,16 @@ jobs:
- cd ${TRAVIS_BUILD_DIR}/build
- cmake ..
-DMFEM_USE_MPI=ON
-DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../$HYPRE_TOP_DIR/src/hypre
-DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../hypre-2.10.0b/src/hypre
-DMFEM_MPI_NP=$NPROCS
- make -j3 mfem examples
- cd ${TRAVIS_BUILD_DIR}/build/tests/unit
- make -j3
- ctest --output-on-failure
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
@@ -241,43 +218,27 @@ jobs:
# - parallel
- os: osx
osx_image: xcode11.2
# osx_image: xcode7.3
compiler: clang
name: "Mac: Serial + Debug"
addons:
homebrew:
packages:
- ccache
env: DEBUG=YES
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=check
cache:
ccache: true
- os: osx
osx_image: xcode11.2
# osx_image: xcode7.3
compiler: clang
name: "Mac: Serial"
addons:
homebrew:
packages:
- ccache
env: DEBUG=NO
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=test
cache:
ccache: true
- os: osx
osx_image: xcode11.2
# osx_image: xcode7.3
compiler: clang
name: "Mac: Parallel + Debug"
addons:
homebrew:
packages:
- ccache
env: DEBUG=YES
MPI=YES
CODECOV=NO
@@ -285,9 +246,9 @@ jobs:
NPROCS=4
TMPDIR=/tmp
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
- $TRAVIS_BUILD_DIR/../metis-4.0
- $HOME/local-cached
before_cache:
@@ -296,13 +257,9 @@ jobs:
rm -f Lib/*.{c,o}
- os: osx
osx_image: xcode11.2
# osx_image: xcode7.3
compiler: clang
name: "Mac: Parallel"
addons:
homebrew:
packages:
- ccache
env: DEBUG=NO
MPI=YES
CODECOV=YES
@@ -310,9 +267,9 @@ jobs:
NPROCS=4
TMPDIR=/tmp
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
- $TRAVIS_BUILD_DIR/../metis-4.0
- $HOME/local-cached
before_cache:
@@ -326,19 +283,14 @@ before_install:
# brew install open-mpi;
# fi
# Disable ccache while building dependencies that are cached:
- echo "before \$PATH = $PATH";
export PATH=${PATH//\/usr\/lib\/ccache:/};
echo "after \$PATH = $PATH"
# On Mac OS X, build and cache OpenMPI 2.1.6:
# On Mac OS X, build and cache OpenMPI 2.1.1:
- if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
if [ ! -e $HOME/local-cached/bin/mpicc ]; then
mkdir -p $HOME/builds && cd $HOME/builds &&
wget https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.6.tar.bz2 &&
tar jxf openmpi-2.1.6.tar.bz2 &&
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.bz2 &&
tar jxf openmpi-2.1.1.tar.bz2 &&
mkdir openmpi-build && cd openmpi-build &&
../openmpi-2.1.6/configure --prefix=$HOME/local-cached &&
../openmpi-2.1.1/configure --prefix=$HOME/local-cached &&
make -j3 all && make install;
fi;
PATH=$HOME/local-cached/bin:$PATH;
@@ -383,28 +335,26 @@ install:
# hypre
- if [ $MPI == "YES" ]; then
if [ ! -e $HYPRE_TOP_DIR/src/hypre/lib/libHYPRE.a ]; then
wget $HYPRE_URL;
rm -rf $HYPRE_TOP_DIR;
tar xvzf $HYPRE_ARCHIVE;
cd $HYPRE_TOP_DIR/src;
./configure --disable-fortran CC=mpicc CXX=mpic++;
if [ ! -e hypre-2.10.0b/src/hypre/lib/libHYPRE.a ]; then
wget https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz --no-check-certificate;
rm -rf hypre-2.10.0b;
tar xvzf hypre-2.10.0b.tar.gz;
cd hypre-2.10.0b/src;
./configure --disable-fortran --without-fei CC=mpicc CXX=mpic++;
make -j3;
cd ../..;
else
echo "Reusing cached $HYPRE_TOP_DIR/";
echo "Reusing cached hypre-2.10.0b/";
fi;
ln -s $HYPRE_TOP_DIR hypre;
ln -s hypre-2.10.0b hypre;
else
echo "Serial build, not using hypre";
fi
# METIS, use a mirror because the original source server is not always up.
# Original url:
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz
# METIS
- if [ $MPI == "YES" ]; then
if [ ! -e metis-4.0/libmetis.a ]; then
wget https://mfem.github.io/tpls/metis-4.0.3.tar.gz;
wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz;
tar xvzf metis-4.0.3.tar.gz;
make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
rm -rf metis-4.0;
@@ -414,18 +364,6 @@ install:
fi;
fi
# Re-enable ccache on linux; enable ccache on mac os:
- if [ $TRAVIS_OS_NAME == "linux" ]; then
export PATH="/usr/lib/ccache:$PATH";
else
if [ $TRAVIS_OS_NAME == "osx" ]; then
export PATH="/usr/local/opt/ccache/libexec:$PATH";
fi;
fi
- printf "which \$CC = "; which $CC;
printf "which \$CXX = "; which $CXX
script:
# Compiler
- if [ $MPI == "YES" ]; then
@@ -446,9 +384,6 @@ script:
if [ "$CODECOV" == "YES" ]; then
CPPFLAGS="--coverage -g";
fi;
if [ "$TRAVIS_OS_NAME" != "linux" ] || [ "$DEBUG" == "YES" ]; then
CPPFLAGS+=" -pedantic -Wall -Werror";
fi
# Configure the library
- make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG $MAKE_CXX_FLAG
+12 -98
View File
@@ -16,12 +16,7 @@ Meshing improvements
- The graph linear ordering library Gecko, previously an external dependency, is
now included directly in MFEM. As a result, Mesh::GetGeckoElementOrdering is
always available. The interface has also been improved, see for example the
Mesh Explorer miniapp.
- Improved Gmsh reader (version 2.2), which now supports both high-order and
periodic meshes. Segments, triangles, quadrilaterals, and tetrahedra are
supported up to order 10. Wedges and hexahedra are supported up to order 9.
For sample periodic meshes, see the periodic*.msh files in the data directory.
mesh-explorer miniapp.
- Added support for finite difference-based gradient and Hessian approximation
in the TMOP mesh optimization algorithms. This improves the accuracy of the
@@ -32,16 +27,11 @@ Meshing improvements
the user to specify different discrete functions for controlling the
size, aspect-ratio, orientation, and skew of elements in the mesh.
- Added TMOP capability for approximate tangential mesh relaxation. Added
support and examples for using TMOP on mixed meshes.
- Added TMOP capability for approximate tangential mesh relaxation.
- Added complete action of the TMOP Integrator to account for the spatial
derivatives of discrete and analytic targets.
- Added support for initialization of (serial) non-conforming meshes. Hanging
nodes can be marked with Mesh::AddVertexParents when building the mesh with
the "init" constructor. The usage is demonstrated in a new meshing miniapp
(polar-nc) which generates meshes that are non-conforming from the start.
- Added support for reading periodic meshes in Gmsh format (version 2.2). See
for example the periodic-annulus-sector and periodic-torus-sector files in
the data directory.
Performance improvements
------------------------
@@ -51,28 +41,13 @@ Performance improvements
- x86 (SSE/AVX/AVX2/AVX512),
- Power8 & Power9 (VSX),
- BG/Q (QPX).
These are disabled by default, and can be enabled with MFEM_USE_SIMD=YES.
These are now enabled by default, and can be disabled with MFEM_USE_SIMD=NO.
See the new file linalg/simd.hpp and the new directory linalg/simd.
Improved GPU capabilities
-------------------------
- Added support for Chebyshev accelerated polynomial smoother on GPU.
- Optimized AMD/HIP kernel support.
- Added a Full Assembly mode compatible with Device kernel execution. This
assembly level builds on top of the current Element Assembly kernels to
compute a global sparse matrix. All integrators supported by element assembly
are also supported by full assembly. See the '-fa' option in Example 9.
- Added CUDA support for sparse matrix-vector multiplication with cuSPARSE.
- Added support for BlockOperator on GPU. See the updated Example 5.
- Added partial assembly and GPU support for complex operators, including the
classes ComplexOperator, [Par]ComplexGridFunction, [Par]ComplexLinearForm, and
[Par]SesquilinearForm. See the updated Example 22.
Discretization improvements
---------------------------
- Added support for matrix-free interpolation and restriction operators between
@@ -96,19 +71,11 @@ Discretization improvements
and, in the continuous field case, arbitrary mesh edges and faces.
- Added new coefficient and vector coefficient classes for QuadratureFunctions.
Additionally, new LinearForm integrators were also added which make use of
Additionaly, new LinearForm integrators were also added which make use of
these new QuadratureFunction coefficient classes.
- Added support face integrals on the boundaries of NURBS meshes.
- Added support for interpolation of functions in L2, H(div) and H(curl)
spaces using GSLIB-FindPoints.
- Added support for computing asymptotic error estimates and convergence rates
for the whole de Rham sequence based on the new class ConvergenceStudy and new
member methods in GridFunction and ParGridFunction. See the rates.cpp file in
the tests/convergence directory for sample usage.
Linear and nonlinear solvers
----------------------------
- Added power method to iteratively estimate the largest eigenvalue and the
@@ -121,10 +88,6 @@ Linear and nonlinear solvers
and solution during the solving process of an IterativeSolver after every
iteration.
- Added support for the CVODES package in SUNDIALS which provides ODE
solvers with sensitivity analysis capabilities. See the CVODESSolver
class and the new adjoint miniapps below.
- Block arrays of parallel matrices can now be merged into a single parallel
matrix with the function HypreParMatrixFromBlocks. This could be useful for
solving block systems with parallel direct solvers such as STRUMPACK.
@@ -132,14 +95,6 @@ Linear and nonlinear solvers
- In SLISolver, changed the residual inner product from (Br,r) to (Br,Br) so the
solver can work with non-SPD preconditioner B.
- Added support for the SLEPc eigensolver package.
- Added partially assembled convergent diagonal preconditioner for adaptively
refined meshes (i.e. non-conforming finite element spaces), see Example 6/6p.
- Added an interface to the Intel MKL Parallel Direct Sparse Solver for
Clusters. An example usage of the interface is shown in Example 11p.
New and updated examples and miniapps
-------------------------------------
- Added a new example, Example 25/25p, to demonstrate the use of a Perfectly
@@ -154,21 +109,6 @@ New and updated examples and miniapps
for applying Dirichlet, Neumann (both homogeneous and inhomogeneous), Robin,
and periodic boundary conditions with either H1 or DG discretizations.
- Added a new miniapp, Navier, that solves the time-dependent Navier-Stokes
equations of incompressible fluid dynamics. See the miniapps/navier directory
for more details.
- Added a new miniapps/adjoint directory with two miniapps demonstrating how to
solve adjoint problems in MFEM using the CVODES package in SUNDIALS. Both of
these miniapps require the MFEM_USE_SUNDIALS configuration option.
* The cvsRoberts_ASAi_dns miniapp solves a backward adjoint problem for a
system of ODEs, evaluating both forward and adjoint quadratures in serial.
* The adjoint_advection_diffusion miniapp solves a backward adjoint problem
for an advection diffusion PDE, evaluating adjoint quadratures in parallel.
- Ported Example 11p to SLEPc, to demonstrate solving the Laplace eigenvalue
equation with the shift-and-invert spectral transformation method.
- Added a simple meshing miniapp, Twist, which demonstrates MFEM's strategy of
stitching together opposite surfaces of a mesh to create a topologically
periodic mesh.
@@ -176,16 +116,11 @@ New and updated examples and miniapps
- Added a new meshing miniapp, Minimal Surface, which solves Plateau's problem:
the Dirichlet problem for the minimal surface equation.
- Added a new meshing miniapp, Polar NC, which demonstrates the construction of
polar non-conforming meshes.
- Added partial assembly support to Example 4/4p and Example 5/5p, with diagonal
- Added partial assembly support to examples 4/4p and 5/5p, with diagonal
preconditioning.
- Added full assembly support in Example 9/9p.
- Added a new test problem in Example 24/24p, demonstrating a mixed bilinear
form for H1, H(curl), H(div) and L_2, with partial assembly support.
- Added a new test problem in example 24/24p, demonstrating a mixed bilinear
form for H(div) and L_2, with partial assembly support.
- Added weak Dirichlet boundary conditions (Nitsche) to the NURBS miniapp.
@@ -193,47 +128,26 @@ New and updated examples and miniapps
mesh based on element attributes. Any newly exposed boundary elements are
assigned attribute numbers related to the trimmed element attributes.
- Added a new miniapp (field-interp) that demonstrates transfer of grid function
between different meshes using GSLIB-FindPoints.
- Added diagonal preconditioner in Example 6/6p for partial assembly with AMR.
- Added device support in Example 5/5p.
- Added partial assembly and device support to Example 22/22p, with diagonal
preconditioning.
- Added the option to plot a function in Mesh Explorer.
Improved testing
----------------
- Upgraded the Catch unit test framework from version 1.6.1 to version 2.13.0.
- Added a GitLab pipeline that automates PR testing on supercomputing systems
and Linux clusters at Lawrence Livermore National Lab (LLNL). This can be
triggered only by LLNL developers, see .gitlab-ci.yml, the .gitlab directory
and the updated CONTRIBUTING.md file.
- Added testing of the parallel mesh format in tests/par-mesh-format.
Miscellaneous
-------------
- Added support for ADIOS2 for parallel I/O with ParaView visualization. The
classes adios2stream and ADIOS2DataCollection are introduced in mfem as the
interfaces to generate ADIOS2 Binary Pack (BP4) directory datasets for the
entire spatial and temporal node data. Cell centered data is accessible by
ADIOS2 data readers (e.g. Python), but currently not yet implement as of
ParaView v5.8.1. In addition, ADIOS2 allows for setting a user-defined number
of data substreams/subfiles at scale. See examples 5, 9, 12, 16.
entire spatial and temporal data. In addition, ADIOS2 allows for setting a
user-defined number of data substreams/subfiles. See examples 5, 9, 12, 16.
- The integration order used in the ComputeLpError and ComputeElementLpError
methods of class GridFunction has been increased.
- Various other simplifications, extensions, and bugfixes in the code.
- Renamed "Backend::DEBUG" to "Backend::DEBUG_DEVICE" to avoid conflicts,
as DEBUG is sometimes used as a macro.
Version 4.1, released on March 10, 2020
=======================================
+21 -46
View File
@@ -89,38 +89,8 @@ enable_language(CXX)
if (MFEM_USE_CUDA)
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
# Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
if (NOT CMAKE_CUDA_HOST_COMPILER)
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
endif()
enable_language(CUDA)
set(CMAKE_CUDA_STANDARD 11)
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CUDA_FLAGS "--expt-extended-lambda")
if (CMAKE_VERSION VERSION_LESS 3.18.0)
set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
elseif (NOT CMAKE_CUDA_ARCHITECTURES)
string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
else()
message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
endif()
else()
set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
endif()
message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
if (CMAKE_VERSION VERSION_LESS 3.12.0)
# CMake versions 3.8 and 3.9 require this to work; 3.10 and 3.11 are not
# tested and may not actually need this (but should be ok to keep).
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
endif()
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
"CUDA flags set for MFEM" FORCE)
set(CUSPARSE_FOUND TRUE)
set(CUSPARSE_LIBRARIES "cusparse")
endif()
if (XSDK_ENABLE_C)
@@ -179,13 +149,9 @@ if (MFEM_USE_MPI)
message(FATAL_ERROR "PETSc version >= 3.8.0 is required")
endif()
set(PETSC_INCLUDE_DIRS ${PETSC_INCLUDES})
if (MFEM_USE_SLEPC)
find_package(SLEPc REQUIRED config)
message(STATUS "Found SLEPc version ${SLEPC_VERSION}")
endif()
endif()
else()
set(PKGS_NEED_MPI SUPERLU PETSC SLEPC STRUMPACK PUMI)
set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK PUMI)
foreach(PKG IN LISTS PKGS_NEED_MPI)
if (MFEM_USE_${PKG})
message(STATUS "Disabling package ${PKG} - requires MPI")
@@ -241,10 +207,10 @@ endif()
# SUNDIALS
if (MFEM_USE_SUNDIALS)
if (NOT MFEM_USE_MPI)
find_package(SUNDIALS REQUIRED NVector_Serial CVODES ARKODE KINSOL)
find_package(SUNDIALS REQUIRED NVector_Serial CVODE ARKODE KINSOL)
else()
find_package(SUNDIALS REQUIRED
NVector_Serial NVector_Parallel NVector_ParHyp CVODES ARKODE KINSOL)
NVector_Serial NVector_Parallel NVector_ParHyp CVODE ARKODE KINSOL)
endif()
endif()
@@ -326,6 +292,22 @@ if (MFEM_USE_HIOP)
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
endif()
# CUDA
if (MFEM_USE_CUDA)
set(CMAKE_CUDA_STANDARD 11)
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CMAKE_CUDA_FLAGS "-arch=${CUDA_ARCH} --expt-extended-lambda"
CACHE STRING "CUDA flags set for MFEM" FORCE)
if (MFEM_USE_MPI)
set(CUDA_CCBIN_COMPILER ${MPI_CXX_COMPILER})
else()
set(CUDA_CCBIN_COMPILER ${CMAKE_CXX_COMPILER})
endif()
string(APPEND CMAKE_CUDA_FLAGS " -ccbin ${CUDA_CCBIN_COMPILER}")
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CUDA_CCBIN_COMPILER})
endif()
# OCCA
if (MFEM_USE_OCCA)
find_package(OCCA REQUIRED)
@@ -346,12 +328,6 @@ if (MFEM_USE_ADIOS2)
find_package(ADIOS2 REQUIRED)
endif()
if (MFEM_USE_MKL_CPARDISO)
if (MFEM_USE_MPI)
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
endif()
endif()
# MFEM_TIMER_TYPE
if (NOT DEFINED MFEM_TIMER_TYPE)
if (APPLE)
@@ -376,9 +352,8 @@ endif()
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
# be before SuiteSparse.
set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
SLEPC MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
CUSPARSE MKL_CPARDISO)
MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
set(TPL_INCLUDE_DIRS "")
-1
View File
@@ -109,7 +109,6 @@ The MFEM source code has the following structure:
├── linalg
├── mesh
├── miniapps
│ ├── adjoint
│ ├── common
│ ├── electromagnetics
│ ├── gslib
+3 -19
View File
@@ -383,10 +383,6 @@ MFEM_USE_PETSC = YES/NO
and other features based on the PETSc package. When enabled, this option uses
the PETSC_* library options, see below.
MFEM_USE_SLEPC = YES/NO
Enable MFEM eigensolvers based on the SLEPc package. When enabled, this
option uses the SLEPC_* library options, see below.
MFEM_USE_MPFR = YES/NO
MPFR is a library for multiple-precision floating-point computations. This
option enables the use of MPFR in MFEM, e.g. for precise computation of 1D
@@ -486,13 +482,6 @@ MFEM_USE_CEED = YES/NO
library for performant high-order operator evaluation developed by the Center
for Efficient Exascale Discretizations in the Exascale Computing Project.
MFEM_USE_MKL_CPARDISO = YES/NO
Enables the interface to the Intel MKL Parallel Direct Sparse Solver for
Clusters. Make sure to set the correct values for MKL_MPI_WRAPPER and
MKL_LIBRARY_SUBDIR as shown in defaults.mk. If you configure MFEM with
MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
OpenMP capabilities are disabled at link time.
MFEM_BUILD_TAG = (any value)
An optional tag to characterize the build. Exported to config/config.mk.
Can be used to identify the MFEM build from other makefiles.
@@ -608,12 +597,6 @@ The specific libraries and their options are:
Options: PETSC_OPT, PETSC_LIB.
Versions: PETSc >= 3.8.0.
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
uses some of the PETSc options when compiled.
URL: https://slepc.upv.es/
Options: SLEPC_OPT, SLEPC_LIB.
Versions: SLEPc >= 3.8.0.
- Sidre (optional), part of LLNL's axom project, used when MFEM_USE_SIDRE = YES.
Starting with MFEM v4.1, Axom version 0.3.1 or later is required.
URL: https://github.com/LLNL/axom
@@ -666,11 +649,12 @@ The specific libraries and their options are:
Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
Versions: OCCA >= 1.0.9.
- libCEED (optional), used when MFEM_USE_CEED = YES.
- libCEED (optional), used when MFEM_USE_CEED = YES. Requires libCEED v0.6
or later version, specifically, git-hash 3d05795 or later.
URL: https://github.com/CEED/libCEED
https://ceed.exascaleproject.org/libceed
Options: CEED_DIR, CEED_OPT, CEED_LIB.
Versions: libCEED > 0.6, git-hash bdfed75.
Versions: libCEED >= 0.6.
- RAJA (optional), used when MFEM_USE_RAJA = YES.
Beginning with MFEM v4.1, only RAJA v0.10.0+ is supported.
-4
View File
@@ -244,10 +244,6 @@ IF (DEFINED TPL_ENABLE_PETSC)
SET(MFEM_USE_PETSC ${TPL_ENABLE_PETSC} CACHE BOOL "Enable PETSc support." FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_SLEPC)
SET(MFEM_USE_SLEPC ${TPL_ENABLE_SLEPC} CACHE BOOL "Enable SLEPc support." FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_MPFR)
SET(MFEM_USE_MPFR ${TPL_ENABLE_MPFR} CACHE BOOL "Enable MPFR usage." FORCE)
ENDIF()
-1
View File
@@ -38,7 +38,6 @@ set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
-6
View File
@@ -104,9 +104,6 @@
// Enable MFEM functionality based on the PETSc library
#cmakedefine MFEM_USE_PETSC
// Enable MFEM functionality based on the SLEPc library
#cmakedefine MFEM_USE_SLEPC
// Enable MFEM functionality based on the Sidre library
#cmakedefine MFEM_USE_SIDRE
@@ -156,7 +153,4 @@
// library.
#cmakedefine MFEM_USE_SIMMETRIX
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
#endif // MFEM_CONFIG_HEADER
+1 -13
View File
@@ -38,19 +38,7 @@ if(NOT ADIOS2_FOUND)
endif()
find_path(ADIOS2_INCLUDE_DIR adios2.h ${ADIOS2_INCLUDE_OPTS})
# adios2 version 2.5.0
find_library(ADIOS2_LIBRARY NAMES adios2 ${ADIOS2_LIBRARY_OPTS})
# adios2 version 2.6.0 and onwards
if(NOT ADIOS2_LIBRARY)
find_library(ADIOS2_CXX11_MPI_LIBRARY NAMES adios2_cxx11_mpi ${ADIOS2_LIBRARY_OPTS})
find_library(ADIOS2_CXX11_LIBRARY NAMES adios2_cxx11 ${ADIOS2_LIBRARY_OPTS})
set(ADIOS2_LIBRARY ${ADIOS2_CXX11_MPI_LIBRARY} ${ADIOS2_CXX11_LIBRARY})
if(MFEM_USE_MPI)
add_definitions(-DADIOS2_USE_MPI)
endif()
endif()
find_library(ADIOS2_LIBRARY NAMES adios2 ${ADIOS2_LIBRARY_OPTS})
include(FindPackageHandleStandardArgs)
find_package_handle_standard_args(ADIOS2
-106
View File
@@ -1,106 +0,0 @@
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - MKL_CPARDISO_FOUND
# - MKL_CPARDISO_LIBRARIES
# - MKL_CPARDISO_INCLUDE_DIRS
if(NOT MKL_MPI_WRAPPER_LIB)
message(FATAL_ERROR "MKL CPardiso enabled but no MKL MPI Wrapper lib specified")
endif()
if(NOT MKL_LIBRARY_DIR)
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
set(MKL_LIBRARY_DIR "lib")
endif()
include(MfemCmakeUtilities)
mfem_find_package(MKL_CPARDISO MKL_CPARDISO
MKL_CPARDISO_DIR "include" mkl_cluster_sparse_solver.h ${MKL_LIBRARY_DIR} mkl_core
"Paths to headers required by MKL CPardiso." "Libraries required by MKL CPARDISO."
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential
ADD_COMPONENT MKL_MPI_WRAPPER "include" "" ${MKL_LIBRARY_DIR} ${MKL_MPI_WRAPPER_LIB}
CHECK_BUILD MKL_CPARDISO_VERSION_OK TRUE
"
#include <mpi.h>
#include <mkl.h>
#include <mkl_cluster_sparse_solver.h>
int main (void)
{
MKL_INT n = 5;
MKL_INT ia[6] = { 1, 4, 6, 9, 12, 14};
MKL_INT ja[13] = { 1, 2, 4, /* index of non-zeros in 1 row*/
1, 2, /* index of non-zeros in 2 row*/
3, 4, 5, /* index of non-zeros in 3 row*/
1, 3, 4, /* index of non-zeros in 4 row*/
2, 5 /* index of non-zeros in 5 row*/
};
double a[13] = {
1.0, -1.0, /*0*/ -3.0, /*0*/
-2.0, 5.0, /*0*/ /*0*/ /*0*/
/*0*/ 4.0, 6.0, 4.0, /*0*/
-4.0, /*0*/ 2.0, 7.0, /*0*/
/*0*/ 8.0, /*0*/ /*0*/ -5.0
};
MKL_INT mtype = 11; /* set matrix type to \"real unsymmetric matrix\" */
MKL_INT nrhs = 1; /* Number of right hand sides. */
double b[5], x[5], bs[5], res, res0; /* RHS and solution vectors. */
/* Internal solver memory pointer pt
* 32-bit: int pt[64] or void *pt[64];
* 64-bit: long int pt[64] or void *pt[64]; */
void *pt[64] = { 0 };
/* Cluster Sparse Solver control parameters. */
MKL_INT iparm[64] = { 0 };
MKL_INT maxfct, mnum, phase, msglvl, error;
/* Auxiliary variables. */
double ddum; /* Double dummy */
MKL_INT idum; /* Integer dummy. */
MKL_INT i, j;
int mpi_stat = 0;
int argc = 0;
int comm, rank;
char* uplo;
char** argv;
mpi_stat = MPI_Init( &argc, &argv );
mpi_stat = MPI_Comm_rank( MPI_COMM_WORLD, &rank );
comm = MPI_Comm_c2f( MPI_COMM_WORLD );
iparm[ 0] = 1; /* Solver default parameters overriden with provided by iparm */
iparm[ 1] = 2; /* Use METIS for fill-in reordering */
iparm[ 5] = 0; /* Write solution into x */
iparm[ 7] = 2; /* Max number of iterative refinement steps */
iparm[ 9] = 13; /* Perturb the pivot elements with 1E-13 */
iparm[10] = 1; /* Use nonsymmetric permutation and scaling MPS */
iparm[12] = 1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */
iparm[17] = -1; /* Output: Number of nonzeros in the factor LU */
iparm[18] = -1; /* Output: Mflops for LU factorization */
iparm[26] = 1; /* Check input data for correctness */
iparm[39] = 0; /* Input: matrix/rhs/solution stored on master */
maxfct = 1; /* Maximum number of numerical factorizations. */
mnum = 1; /* Which factorization to use. */
msglvl = 1; /* Print statistical information in file */
error = 0; /* Initialize error flag */
phase = 11;
cluster_sparse_solver ( pt, &maxfct, &mnum, &mtype, &phase,
&n, a, ia, ja, &idum, &nrhs, iparm, &msglvl, &ddum, &ddum, &comm, &error );
mpi_stat = MPI_Finalize();
return error;
}
")
-44
View File
@@ -1,44 +0,0 @@
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Sets the following variables:
# - SLEPC_FOUND
# - SLEPC_INCLUDE_DIRS
# - SLEPC_LIBRARIES
set(SLEPc_REQUIRED_PACKAGES "PETSC" CACHE STRING
"Additional packages required by SLEPc")
include(MfemCmakeUtilities)
mfem_find_package(SLEPc SLEPC SLEPC_DIR
"include" "slepceps.h"
"${PETSC_ARCH}/lib" "slepc" # add NAMES_PER_DIR?
"Paths to headers required by SLEPc."
"Libraries required by SLEPc."
ADD_COMPONENT "config" "${PETSC_ARCH}/include" "slepcconf.h" "" ""
CHECK_BUILD SLEPC_VERSION_OK TRUE
"
#include \"petsc.h\"
#include \"slepceps.h\"
int main()
{
PetscErrorCode ierr;
int argc = 0;
char** argv = NULL;
ierr = SlepcInitialize(&argc, &argv, PETSC_NULL, PETSC_NULL);
EPS eps;
ierr = EPSCreate(PETSC_COMM_SELF, &eps); CHKERRQ(ierr);
ierr = EPSDestroy(&eps); CHKERRQ(ierr);
ierr = SlepcFinalize(); CHKERRQ(ierr);
return 0;
}
"
)
-1
View File
@@ -25,6 +25,5 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
ADD_COMPONENT NVector_ParHyp
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
ADD_COMPONENT CVODE "include" cvode/cvode.h "lib" sundials_cvode
ADD_COMPONENT CVODES "include" cvodes/cvodes.h "lib" sundials_cvodes
ADD_COMPONENT ARKODE "include" arkode/arkode.h "lib" sundials_arkode
ADD_COMPONENT KINSOL "include" kinsol/kinsol.h "lib" sundials_kinsol)
+2 -10
View File
@@ -128,15 +128,7 @@ function(add_mfem_miniapp MFEM_EXE_NAME)
if (MFEM_USE_CUDA)
set_property(SOURCE ${MAIN_LIST} ${EXTRA_SOURCES_LIST}
PROPERTY LANGUAGE CUDA)
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.12.0)
list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
else()
set(LIST_)
foreach(item IN LISTS EXTRA_OPTIONS_LIST)
list(APPEND LIST_ "-Xcompiler=${item}")
endforeach()
set(EXTRA_OPTIONS_LIST ${LIST_})
endif()
list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
endif()
# Actually add the executable
@@ -739,7 +731,7 @@ function(mfem_export_mk_files)
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GNUTLS
MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE
MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_MPFR MFEM_USE_SIDRE
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2)
foreach(var ${CONFIG_MK_BOOL_VARS})
-9
View File
@@ -42,21 +42,12 @@
#ifdef MFEM_USE_SUPERLU
#error Building with SuperLU_DIST (MFEM_USE_SUPERLU=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
#ifdef MFEM_USE_MUMPS
#error Building with MUMPS (MFEM_USE_MUMPS=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
#ifdef MFEM_USE_STRUMPACK
#error Building with STRUMPACK (MFEM_USE_STRUMPACK=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
#ifdef MFEM_USE_MKL_CPARDISO
#error Building with MKL CPARDISO (MFEM_USE_MKL_CPARDISO=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
#ifdef MFEM_USE_PETSC
#error Building with PETSc (MFEM_USE_PETSC=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
#ifdef MFEM_USE_SLEPC
#error Building with SLEPc (MFEM_USE_SLEPC=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
#ifdef MFEM_USE_PUMI
#error Building with PUMI (MFEM_USE_PUMI=YES) requires MPI (MFEM_USE_MPI=YES)
#endif
-10
View File
@@ -94,10 +94,6 @@
// Enable MFEM functionality based on the SuperLU library.
// #define MFEM_USE_SUPERLU
// Enable MFEM functionality based on the MUMPS library.
// #define MFEM_USE_MUMPS
// #define MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
@@ -122,9 +118,6 @@
// Enable functionality based on the PETSc library
// #define MFEM_USE_PETSC
// Enable functionality based on the SLEPc library
// #define MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
// #define MFEM_USE_MPFR
@@ -167,7 +160,4 @@
// library.
// #define MFEM_USE_SIMMETRIX
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
#endif // MFEM_CONFIG_HEADER
-3
View File
@@ -32,13 +32,11 @@ MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
MFEM_USE_GNUTLS = @MFEM_USE_GNUTLS@
MFEM_USE_NETCDF = @MFEM_USE_NETCDF@
MFEM_USE_PETSC = @MFEM_USE_PETSC@
MFEM_USE_SLEPC = @MFEM_USE_SLEPC@
MFEM_USE_MPFR = @MFEM_USE_MPFR@
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
@@ -53,7 +51,6 @@ MFEM_USE_CEED = @MFEM_USE_CEED@
MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
# Compiler, compile options, and link options
MFEM_CXX = @MFEM_CXX@
+1 -13
View File
@@ -39,7 +39,6 @@ option(MFEM_USE_GNUTLS "Enable GNUTLS usage" OFF)
option(MFEM_USE_GSLIB "Enable GSLIB usage" OFF)
option(MFEM_USE_NETCDF "Enable NETCDF usage" OFF)
option(MFEM_USE_PETSC "Enable PETSc support." OFF)
option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
@@ -50,9 +49,8 @@ option(MFEM_USE_OCCA "Enable OCCA" OFF)
option(MFEM_USE_RAJA "Enable RAJA" OFF)
option(MFEM_USE_CEED "Enable CEED" OFF)
option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" ON)
option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
@@ -89,8 +87,6 @@ set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library."
set(LIBUNWIND_DIR "" CACHE PATH "Path to Libunwind.")
# For sundials_nvecparhyp and nvecparallel remember to build with MPI_ENABLED=ON
# and modify cmake variables for hypre for sundials
set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
"Path to the SUNDIALS library.")
# The following may be necessary, if SUNDIALS was built with KLU:
@@ -159,10 +155,6 @@ set(PETSC_DIR "${MFEM_DIR}/../petsc" CACHE PATH
"Path to the PETSc main directory.")
set(PETSC_ARCH "arch-linux2-c-debug" CACHE STRING "PETSc build architecture.")
set(SLEPC_DIR "${MFEM_DIR}/../slepc" CACHE PATH
"Path to the SLEPc main directory.")
set(SLEPC_ARCH "arch-linux2-c-debug" CACHE STRING "SLEPC build architecture.")
set(MPFR_DIR "" CACHE PATH "Path to the MPFR library.")
set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
@@ -181,10 +173,6 @@ set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that HiOp depends on.")
set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
+4 -22
View File
@@ -120,7 +120,6 @@ MFEM_USE_SUNDIALS = NO
MFEM_USE_MESQUITE = NO
MFEM_USE_SUITESPARSE = NO
MFEM_USE_SUPERLU = NO
MFEM_USE_MUMPS = NO
MFEM_USE_STRUMPACK = NO
MFEM_USE_GINKGO = NO
MFEM_USE_GNUTLS = NO
@@ -139,9 +138,8 @@ MFEM_USE_RAJA = NO
MFEM_USE_OCCA = NO
MFEM_USE_CEED = NO
MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_SIMD = YES
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
# Compile and link options for zlib.
ZLIB_DIR =
@@ -158,7 +156,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
# METIS library configuration
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK)$(MFEM_USE_MUMPS),NONONO)
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK),NONO)
ifeq ($(MFEM_USE_METIS_5),NO)
METIS_DIR = @MFEM_DIR@/../metis-4.0
METIS_OPT =
@@ -191,12 +189,10 @@ OPENMP_LIB =
POSIX_CLOCKS_LIB = -lrt
# SUNDIALS library configuration
# For sundials_nvecparhyp and nvecparallel remember to build with MPI_ENABLED=ON
# and modify cmake variables for hypre for sundials
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
SUNDIALS_LIB = -Wl,-rpath,$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib64\
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
-lsundials_arkode -lsundials_cvode -lsundials_nvecserial -lsundials_kinsol
ifeq ($(MFEM_USE_MPI),YES)
SUNDIALS_LIB += -lsundials_nvecparhyp -lsundials_nvecparallel
@@ -234,7 +230,7 @@ SCALAPACK_DIR = @MFEM_DIR@/../scalapack-2.0.2
SCALAPACK_OPT = -I$(SCALAPACK_DIR)/SRC
SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
# MPI Fortran library, needed e.g. by STRUMPACK or MUMPS
# MPI Fortran library, needed e.g. by STRUMPACK
# MPICH:
MPI_FORTRAN_LIB = -lmpifort
# OpenMPI:
@@ -242,11 +238,6 @@ MPI_FORTRAN_LIB = -lmpifort
# Additional Fortan library:
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
MUMPS_DIR =
MUMPS_OPT = -I$(MUMPS_DIR)/include
MUMPS_LIB = -Wl,-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps -lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
# STRUMPACK library configuration
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
@@ -379,15 +370,6 @@ UMPIRE_DIR = @MFEM_DIR@/../umpire
UMPIRE_OPT = -I$(UMPIRE_DIR)/include
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
# MKL CPardiso library configuration
MKL_CPARDISO_DIR ?=
MKL_MPI_WRAPPER ?= mkl_blacs_mpich_lp64
MKL_LIBRARY_SUBDIR ?= lib
MKL_CPARDISO_OPT = -I$(MKL_CPARDISO_DIR)/include
MKL_CPARDISO_LIB = -Wl,-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# If YES, enable some informational messages
VERBOSE = NO
-33
View File
@@ -1,33 +0,0 @@
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "dmumps_c.h"
#include <string>
#include <iostream>
#include <algorithm>
// Macros to expand a macro as a string
#define STR_EXPAND(s) #s
#define STR(s) STR_EXPAND(s)
int main()
{
#ifdef MUMPS_VERSION
const char *ptr = STR(MUMPS_VERSION);
std::string s(ptr);
s.erase(std::remove(s.begin(), s.end(), '"'), s.end());
s.erase(std::remove(s.begin(), s.end(), '.'), s.end());
std::cout << s << "\n";
return 0;
#else
return -1;
#endif
}
+2 -19
View File
@@ -42,10 +42,6 @@ GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
MUMPS = $(MFEM_USE_MUMPS:NO=)
GMV_CXX ?= $(MFEM_CXX)
GMV = get_mumps_version
GMV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
$(GHV): $(SRC)$(GHV).cpp
$(call mfem-info, Determining HYPRE version ...)
@@ -54,13 +50,6 @@ $(GHV).out: $(GHV)
./$(GHV) > $(GHV).out
.INTERMEDIATE: $(GHV) $(GHV).out
$(GMV): $(SRC)$(GMV).cpp
$(call mfem-info, Determining MUMPS version ...)
$(GMV_CXX) ${GMV_FLAGS} $(SRC)$(GMV).cpp -o $(GMV)
$(GMV).out: $(GMV)
./$(GMV) > $(GMV).out
.INTERMEDIATE: $(GMV) $(GMV).out
get-hypre-version: $(GHV).out
$(eval MFEM_HYPRE_VERSION:=$(shell cat $(GHV).out))
$(if $(MFEM_HYPRE_VERSION),$(eval export MFEM_HYPRE_VERSION)\
@@ -73,16 +62,10 @@ check-smx:
$(call mfem-info, MFEM_USE_SIMMETRIX = $(MFEM_USE_SIMMETRIX))
$(eval export MFEM_USE_SIMMETRIX)
get-mumps-version: $(GMV).out
$(eval MFEM_MUMPS_VERSION:=$(shell cat $(GMV).out))
$(if $(MFEM_MUMPS_VERSION),$(eval export MFEM_MUMPS_VERSION)\
$(info MUMPS version: $(MFEM_MUMPS_VERSION)),\
$(error Unable to determine MUMPS version))
header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx,) $(if $(MUMPS),get-mumps-version,)
header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx)
$(call mfem-info, Writing $(CONFIG_HPP) ...)
@set -- && \
for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX) $(if $(MUMPS),MFEM_MUMPS_VERSION); do \
for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX); do \
eval var=\$$$$def && \
if [ "NO" != "$${var}" ]; then \
set -- "$$@" -e "s|// \(#define $${def} \)|\1|" && \
+7 -50
View File
@@ -78,14 +78,6 @@ groups_parallel=(
"miniapps/electromagnetics"
"joule.cpp"'
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
'"convergence"
"Convergence tests:"
"tests/convergence"
"diffusion.cpp"'
'"par-mesh-format"
"Parallel mesh tests:"
"tests/par-mesh-format"
"ex1p.cpp"'
)
# All groups serial + parallel runs mixed in the same group:
groups_all=(
@@ -115,14 +107,6 @@ groups_all=(
"miniapps/electromagnetics"
"joule.cpp"'
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
'"convergence"
"Convergence tests:"
"tests/convergence"
"diffusion.cpp"'
'"par-mesh-format"
"Parallel mesh tests:"
"tests/par-mesh-format"
"ex1p.cpp"'
)
make_all="all"
base_timeformat=$'real: %3Rs user: %3Us sys: %3Ss %%cpu: %P'
@@ -396,15 +380,10 @@ function timed_run()
# This function is used to execute the sample runs
function go()
{
# Strip leading and trailing spaces from $1 and store the result in cmd_line
shopt -s extglob
local cmd_line="${1##+( )}"
cmd_line="${cmd_line%%+( )}"
shopt -u extglob
eval local cmd=(${cmd_line})
local cmd=("$@")
local res=""
echo $sep
echo "<${group}>" "${cmd_line}"
echo "<${group}>" "${cmd[@]}"
echo $sep
if [ "${timing}" == "yes" ]; then
timed_run "${cmd[@]}"
@@ -416,15 +395,15 @@ function go()
else
res="${red}FAILED${none}"
fi
printf "[${res}] <${group}> ${cmd_line}\n"
printf "[${res}] <${group}> ${cmd[*]}\n"
if [ "${timing}" == "yes" ]; then
printf "Run time: %s\n" "${timer}"
timer=(${timer})
timer="${timer[1]}"
printf -v line "[$res](%8s) ${cmd_line}" "$timer"
printf -v line "[$res](%8s) ${cmd[*]}" "$timer"
summary=("${summary[@]}" "$line")
else
summary=("${summary[@]}" "[${res}] ${cmd_line}")
summary=("${summary[@]}" "[${res}] ${cmd[*]}")
fi
echo $sep
}
@@ -459,7 +438,7 @@ function go_group()
fi
for run in "${runs[@]}"; do
if [ "${run}" == "" ]; then continue; fi
eval go \"\${run_prefix} \${run} \${run_suffix}\" $output
eval go \${run_prefix} \${run} \${run_suffix} $output
done
done
${make} clean-exec
@@ -525,7 +504,7 @@ function echo_run()
{
echo " $@"
{ echo " $@"; echo "$sep";
eval "$@"
"$@"
echo "$sep"; } >> "$echo_log" 2>&1
}
@@ -545,28 +524,6 @@ function build_all()
echo_run ${make} config ${mfem_config} || exit 1
echo_run ${make} ${make_j} || exit 1
echo_run ${make} ${make_all} ${make_j} || exit 1
# Build groups in directories other than the directories built by 'make all':
for group_params in "${groups[@]}"; do
eval params=(${group_params})
group_dir="${params[2]}"
case "$group_dir" in
(examples*|miniapps*)
# Built by 'make all'
;;
(*)
if [ "${mfem_dir}" != "${mfem_build_dir}" ]; then
echo_run mkdir -p "${group_dir}" || exit 1
echo_run cd "${group_dir}" || exit 1
echo_run cp -af "${mfem_dir}/${group_dir}/makefile" . || exit 1
else
echo_run cd "${group_dir}" || exit 1
fi
echo_run ${make} clean || exit 1
echo_run ${make} MFEM_DIR="${mfem_dir}" ${make_j} || exit 1
echo_run cd "${mfem_build_dir}" || exit 1
;;
esac
done
}
# Function that runs all sample runs, given by the array variable "groups".
+8 -57
View File
@@ -1,38 +1,13 @@
SetFactory("OpenCASCADE");
// Select periodic mesh by setting this to either 0 - standard, 1 - periodic
periodic = 1;
// Set the geometry order (1, 2, ..., 9)
order = 3;
// Set the element type (3 - triangles, 4 - quadrilaterals)
type = 3;
// Number of radial elements
nrad = 2;
// Number of azimuthal elements on inner arc
nazm1 = 3;
// Number of azimuthal elements on outer arc
nazm2 = 5;
// Note: Using type = 4 with nazm1 != nazm2 can lead to mixed meshes
// containing both triangles and quadrilaterals.
// Inner and outer radii
R1 = 1.0;
R2 = 2.0;
// Angular size of the sector
Phi = Pi/3.0;
Point(1) = {0.0, 0, 0, 1.0};
Point(2) = {R1, 0, 0, 1.0};
Point(3) = {R2, 0, 0, 1.0};
Point(4) = {R1*Cos(Phi), R1*Sin(Phi), 0, 1.0};
Point(5) = {R2*Cos(Phi), R2*Sin(Phi), 0, 1.0};
Point(4) = {R1*Cos(Pi/3), R1*Sin(Pi/3), 0, 1.0};
Point(5) = {R2*Cos(Pi/3), R2*Sin(Pi/3), 0, 1.0};
Line(1) = {2, 3};
Line(2) = {4, 5};
Circle(3) = {2, 1, 4};
@@ -40,23 +15,13 @@ Circle(4) = {3, 1, 5};
Curve Loop(5) = {1, 4, -2, -3};
Plane Surface(1) = {5};
Transfinite Curve{1} = nrad+1;
Transfinite Curve{2} = nrad+1;
Transfinite Curve{3} = nazm1+1;
Transfinite Curve{4} = nazm2+1;
If (nazm1 == nazm2)
Transfinite Surface{1};
EndIf
If (type == 4)
Recombine Surface {1};
EndIf
Transfinite Curve{1} = 7;
Transfinite Curve{2} = 7;
Transfinite Curve{3} = 4;
Transfinite Curve{4} = 10;
// Set a rotation periodicity constraint:
If (periodic)
Periodic Line{1} = {2} Rotate{{0,0,1}, {0,0,0}, -Phi};
EndIf
Periodic Line{1} = {2} Rotate{{0,0,1}, {0,0,0}, -Pi/3};
// Tag surfaces and volumes with positive integers
Physical Curve(1) = {3};
@@ -65,22 +30,8 @@ Physical Curve(3) = {1};
Physical Curve(4) = {2};
Physical Surface(1) = {1};
// Optimize the high-order mesh
// See https://gmsh.info/doc/texinfo/gmsh.html#index-Mesh_002eHighOrderOptimize
// Mesh.ElementOrder = order;
// Mesh.HighOrderOptimize = 1;
// Generate 2D mesh
Mesh 2;
SetOrder order;
Mesh.MshFileVersion = 2.2;
// Check the element quality (the Plugin may be called AnalyseCurvedMesh)
// Plugin(AnalyseMeshQuality).JacobianDeterminant = 1;
// Plugin(AnalyseMeshQuality).Run;
If (periodic)
Save Sprintf("periodic-annulus-sector-t%01g-o%01g.msh", type, order);
Else
Save Sprintf("annulus-sector-t%01g-o%01g.msh", type, order);
EndIf
Save "periodic-annulus-sector.msh";
+161 -168
View File
@@ -2,191 +2,184 @@ $MeshFormat
2.2 0 8
$EndMeshFormat
$Nodes
136
55
1 1 0 0
2 2 0 0
3 0.5000000000000001 0.8660254037844386 0
4 1 1.732050807568877 0
5 1.5 0 0
6 1.166666666666667 0 0
7 1.333333333333333 0 0
5 1.166666666666667 0 0
6 1.333333333333333 0 0
7 1.5 0 0
8 1.666666666666667 0 0
9 1.833333333333333 0 0
10 0.7500000000000002 1.299038105676658 0
11 0.5833333333333335 1.010362971081845 0
12 0.6666666666666667 1.154700538379251 0
10 0.5833333333333335 1.010362971081845 0
11 0.6666666666666667 1.154700538379251 0
12 0.7500000000000002 1.299038105676658 0
13 0.8333333333333335 1.443375672974064 0
14 0.9166666666666669 1.587713240271471 0
15 0.9396926207859085 0.3420201433256683 0
16 0.7660444431189786 0.6427876096865386 0
17 0.993238357741943 0.1160929141252301 0
18 0.9730448705798238 0.2306158707424401 0
19 0.8936326403234125 0.4487991802004617 0
20 0.8354878114129367 0.5495089780708056 0
21 0.6862416378687343 0.7273736415730481 0
22 0.597158591702787 0.8021231927550432 0
23 1.956295201467611 0.4158233816355181 0
24 1.827090915285202 0.8134732861515996 0
25 1.618033988749896 1.175570504584944 0
26 1.338261212717719 1.486289650954786 0
27 1.995128100519648 0.1395129474882505 0
28 1.980536137483141 0.278346201920131 0
29 1.922523391876638 0.551274711633998 0
30 1.879385241571817 0.6840402866513373 0
31 1.765895185717855 0.9389431255717802 0
32 1.696096192312853 1.059838528466408 0
33 1.532088886237958 1.285575219373077 0
34 1.438679600677305 1.389316740917992 0
35 1.231322950651319 1.576021507213442 0
36 1.118385806941496 1.658075145110082 0
37 1.162276263405681 0.6710405135499813 0
38 1.248615852873337 1.079531485311822 0
39 1.559209616901855 0.5415673055003691 0
40 1.478306597054007 0.8535007117539289 0
41 0.9210953433941653 0.9653302893212266 0
42 1.296548225291847 0.3150268220262836 0
43 1.055002035226811 1.358510675893086 0
44 1.704005774249187 0.2344032256041583 0
45 0.6403651144647218 0.8991270322967013 0
46 0.7807302289294435 0.9322286608089638 0
47 0.864063562262777 1.07656622810637 0
48 0.8070317811313885 1.187802166891514 0
49 0.7236984477980553 1.043464599594108 0
50 1.432182741763949 0.1050089406754279 0
51 1.364365483527898 0.2100178813508558 0
52 1.197698816861231 0.2100178813508558 0
53 1.098849408430616 0.1050089406754279 0
54 1.265516075097282 0.1050089406754278 0
55 0.8177280765440409 0.7503018362314346 0
56 0.869411709969103 0.8578160627763305 0
57 0.7348318576552288 0.8316090412164392 0
58 1.177596357123201 0.3240245957927452 0
59 1.058644488954555 0.3330223695592067 0
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55 1.055356609656722 1.558136350380461 0
$EndNodes
$Elements
38
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11 26 2 2 4 25 26 33 34
12 26 2 2 4 26 4 35 36
13 21 2 1 1 3 41 10 45 46 47 48 12 11 49
14 21 2 1 1 5 42 1 50 51 52 53 6 7 54
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18 21 2 1 1 39 40 37 68 69 62 61 70 71 72
19 21 2 1 1 38 41 37 73 74 75 76 66 65 77
20 21 2 1 1 37 42 39 78 79 80 81 71 70 82
21 21 2 1 1 24 39 23 83 84 85 86 29 30 87
22 21 2 1 1 26 38 25 88 89 90 91 33 34 92
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24 21 2 1 1 42 44 39 98 99 100 101 81 80 102
25 21 2 1 1 38 43 41 103 104 105 106 74 73 107
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27 21 2 1 1 10 43 4 113 114 115 116 14 13 117
28 21 2 1 1 24 40 39 118 119 69 68 84 83 120
29 21 2 1 1 38 40 25 64 63 121 122 91 90 123
30 21 2 1 1 41 43 10 106 105 114 113 48 47 124
31 21 2 1 1 5 44 42 111 110 99 98 51 50 125
32 21 2 1 1 25 40 24 122 121 119 118 31 32 126
33 21 2 1 1 37 41 16 76 75 56 55 96 95 127
34 21 2 1 1 15 42 37 59 58 79 78 94 93 128
35 21 2 1 1 4 43 26 116 115 129 130 35 36 131
36 21 2 1 1 23 44 2 132 133 109 108 27 28 134
37 21 2 1 1 26 43 38 130 129 104 103 89 88 135
38 21 2 1 1 39 44 23 101 100 133 132 86 85 136
108
1 1 2 3 1 1 5
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3 1 2 3 1 6 7
4 1 2 3 1 7 8
5 1 2 3 1 8 9
6 1 2 3 1 9 2
7 1 2 4 2 3 10
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10 1 2 4 2 12 13
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12 1 2 4 2 14 4
13 1 2 1 3 1 15
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16 1 2 2 4 2 17
17 1 2 2 4 17 18
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19 1 2 2 4 19 20
20 1 2 2 4 20 21
21 1 2 2 4 21 22
22 1 2 2 4 22 23
23 1 2 2 4 23 24
24 1 2 2 4 24 4
25 2 2 1 1 32 40 25
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28 2 2 1 1 38 52 25
29 2 2 1 1 33 36 29
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31 2 2 1 1 35 37 26
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63 2 2 1 1 9 39 8
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71 2 2 1 1 27 42 19
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75 2 2 1 1 6 40 5
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86 2 2 1 1 27 49 41
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91 2 2 1 1 45 53 46
92 2 2 1 1 45 46 13
93 2 2 1 1 5 44 1
94 2 2 1 1 21 49 20
95 2 2 1 1 46 53 30
96 2 2 1 1 3 48 10
97 2 2 1 1 34 50 33
98 2 2 1 1 36 51 37
99 2 2 1 1 26 45 12
100 2 2 1 1 11 47 26
101 2 2 1 1 27 50 42
102 2 2 1 1 40 44 5
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105 2 2 1 1 9 54 39
106 2 2 1 1 46 55 14
107 2 2 1 1 1 44 15
108 2 2 1 1 16 48 3
$EndElements
$Periodic
1
1 1 2
Affine 0.5000000000000001 0.8660254037844386 0 0 -0.8660254037844386 0.5000000000000001 0 0 0 0 1 0 0 0 0 1
3
7
9 14
6 11
8 13
5 10
1 3
7 12
2 4
1 3
$EndPeriodic
+13 -129
View File
@@ -1,141 +1,25 @@
// Select periodic mesh by setting this to either 0 - standard, 1 - periodic
periodic = 1;
SetFactory("OpenCASCADE");
// Set the geometry order (1, 2, ..., 10 for tetrahedra or 9 for other types)
order = 3;
R = 1.5;
r = 0.5;
// Set the element type (4 - tetrahedra, 6 - wedges, 8 - hexahedra)
type = 8;
Torus(1) = {0,0,0, R, r, Pi/3};
// Minor and major radii
R1 = 1.0;
R2 = 2.0;
pts() = PointsOf{ Volume{1}; };
// Side length of interior square
A1 = 0.8;
// Angular size of the sector
Phi = Pi/3.0;
// Number of azimuthal elements
nazm = 3;
// Number of elements around a quarter of the circle
narc = 2;
// Number of elements between surface and interior square
nshl = 1;
lc = 0.5;
a1 = A1 / Sqrt(2.0);
Point(1) = {R2+R1, 0, 0, lc};
Point(2) = {R2, 0, R1, lc};
Point(3) = {R2-R1, 0, 0, lc};
Point(4) = {R2, 0, -R1, lc};
Point(5) = {R2, 0, 0, lc};
Point(6) = {R2+a1, 0, 0, lc};
Point(7) = {R2, 0, a1, lc};
Point(8) = {R2-a1, 0, 0, lc};
Point(9) = {R2, 0, -a1, lc};
Circle(1) = {1,5,2};
Circle(2) = {2,5,3};
Circle(3) = {3,5,4};
Circle(4) = {4,5,1};
Line(5) = {6,1};
Line(6) = {7,2};
Line(7) = {8,3};
Line(8) = {9,4};
Line(9) = {6, 7};
Line(10) = {7, 8};
Line(11) = {8, 9};
Line(12) = {9, 6};
Line Loop(101) = {1, -6, -9, 5};
Line Loop(102) = {2, -7, -10, 6};
Line Loop(103) = {3, -8, -11, 7};
Line Loop(104) = {4, -5, -12, 8};
Line Loop(105) = {9, 10, 11, 12};
Plane Surface(201) = {101};
Plane Surface(202) = {102};
Plane Surface(203) = {103};
Plane Surface(204) = {104};
Plane Surface(205) = {105};
Transfinite Curve{1} = narc+1;
Transfinite Curve{2} = narc+1;
Transfinite Curve{3} = narc+1;
Transfinite Curve{4} = narc+1;
Transfinite Curve{5} = nshl+1;
Transfinite Curve{6} = nshl+1;
Transfinite Curve{7} = nshl+1;
Transfinite Curve{8} = nshl+1;
Transfinite Curve{9} = narc+1;
Transfinite Curve{10} = narc+1;
Transfinite Curve{11} = narc+1;
Transfinite Curve{12} = narc+1;
If (type == 8)
Recombine Surface {201};
Recombine Surface {202};
Recombine Surface {203};
Recombine Surface {204};
Recombine Surface {205};
Transfinite Surface {201} = {1,2,7,6};
Transfinite Surface {202} = {2,3,8,7};
Transfinite Surface {203} = {3,4,9,8};
Transfinite Surface {204} = {4,1,6,9};
Transfinite Surface {205} = {6,7,8,9};
EndIf
If (type == 4)
Extrude { {0,0,1} , {0,0,0} , Phi} {
Surface{201,202,203,204,205}; Layers{nazm};
}
Else
Extrude { {0,0,1} , {0,0,0} , Phi} {
Surface{201,202,203,204,205}; Layers{nazm}; Recombine;
}
EndIf
Characteristic Length{ pts() } = 0.25;
// Set a rotation periodicity constraint:
If (periodic)
Periodic Surface{227} = {201} Rotate{{0,0,1}, {0,0,0}, Phi};
Periodic Surface{249} = {202} Rotate{{0,0,1}, {0,0,0}, Phi};
Periodic Surface{271} = {203} Rotate{{0,0,1}, {0,0,0}, Phi};
Periodic Surface{293} = {204} Rotate{{0,0,1}, {0,0,0}, Phi};
Periodic Surface{315} = {205} Rotate{{0,0,1}, {0,0,0}, Phi};
EndIf
Periodic Surface{3} = {2} Rotate{{0,0,1}, {0,0,0}, Pi/3};
// Tag surfaces and volumes with positive integers
Physical Surface(1) = {201,202,203,204,205};
Physical Surface(2) = {227,249,271,293,315};
Physical Surface(3) = {214,236,258,280};
Physical Volume(1) = {1,2,3,4,5};
// Optimize the high-order mesh
// See https://gmsh.info/doc/texinfo/gmsh.html#index-Mesh_002eHighOrderOptimize
// Mesh.ElementOrder = order;
// Mesh.HighOrderOptimize = 1;
Physical Surface(1) = {1};
Physical Surface(2) = {2};
Physical Surface(3) = {3};
Physical Volume(1) = {1};
// Generate 3D mesh
Mesh 3;
SetOrder order;
Mesh.MshFileVersion = 2.2;
// Check the element quality (the Plugin may be called AnalyseCurvedMesh)
// Plugin(AnalyseMeshQuality).JacobianDeterminant = 1;
// Plugin(AnalyseMeshQuality).Run;
If (periodic)
Save Sprintf("periodic-torus-sector-t%01g-o%01g.msh", type, order);
Else
Save Sprintf("torus-sector-t%01g-o%01g.msh", type, order);
EndIf
Save "periodic-torus-sector.msh";
File diff suppressed because it is too large Load Diff
-118
View File
@@ -1,118 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
20
1 3 0 1 6 5
1 3 1 2 7 6
1 3 2 3 8 7
1 3 3 4 9 8
1 3 5 6 11 10
1 2 6 7 11
1 2 7 12 11
1 2 7 8 13
1 2 7 13 12
1 3 8 9 14 13
1 3 10 11 16 15
1 2 11 12 17
1 2 11 17 16
1 2 12 13 17
1 2 13 18 17
1 3 13 14 19 18
1 3 15 16 21 20
1 3 16 17 22 21
1 3 17 18 23 22
1 3 18 19 24 23
boundary
16
2 1 0 1
2 1 1 2
2 1 2 3
2 1 3 4
2 1 21 20
2 1 22 21
2 1 23 22
2 1 24 23
1 1 5 0
1 1 10 5
1 1 15 10
1 1 20 15
1 1 4 9
1 1 9 14
1 1 14 19
1 1 19 24
vertices
25
nodes
FiniteElementSpace
FiniteElementCollection: H1_2D_P1
VDim: 2
Ordering: 0
0
0.25
0.5
0.75
1
0
0.25
0.5
0.75
1
0
0.25
0.5
0.75
1
0
0.25
0.5
0.75
1
0
0.25
0.5
0.75
1
0
0
0
0
0
0.25
0.25
0.25
0.25
0.25
0.5
0.5
0.5
0.5
0.5
0.75
0.75
0.75
0.75
0.75
1
1
1
1
1
-1
View File
@@ -770,7 +770,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/examples/pumi \
@MFEM_SOURCE_DIR@/examples/hiop \
@MFEM_SOURCE_DIR@/examples/sundials \
@MFEM_SOURCE_DIR@/miniapps/adjoint \
@MFEM_SOURCE_DIR@/miniapps/common \
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
@MFEM_SOURCE_DIR@/miniapps/gslib \
+3 -8
View File
@@ -88,8 +88,8 @@ namespace mfem {
* - <a class="el" href="ex24p_8cpp_source.html">Example 24p</a>: parallel mixed finite element spaces and interpolators
* - <a class="el" href="ex25_8cpp_source.html">Example 25</a>: simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
* - <a class="el" href="ex25p_8cpp_source.html">Example 25p</a>: parallel simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
* - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Laplace problem using nodal H1 FEM
* - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Laplace problem using nodal H1 FEM
* - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Laplace problem using nodal H1 FEM
* - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Laplace problem using nodal H1 FEM
*
* <H4>SUNDIALS Examples</H4>
* - Variants of Examples
@@ -101,9 +101,6 @@ namespace mfem {
* and
* <a class="el" href="sundials_2ex16p_8cpp_source.html">16p</a>
* demonstrating the use of MFEM's \link sundials.hpp SUNDIALS classes\endlink
* - CVODES adjoint examples:
* <a class="el" href="cvsRoberts__ASAi__dns_8cpp_source.html">serial ODE system</a>,
* <a class="el" href="adjoint__advection__diffusion_8cpp_source.html">parallel advection-diffusion</a>
*
* <H4>PETSc Examples</H4>
* - Variants of Examples
@@ -143,13 +140,11 @@ namespace mfem {
* - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
* - <a class="el" href="maxwell_8cpp_source.html">Maxwell</a>: simple transient full-wave electromagnetics simulation code
* - <a class="el" href="joule_8cpp_source.html">Joule</a>: transient magnetics and Joule heating miniapp
* - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
* - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
* - <a class="el" href="klein-bottle_8cpp_source.html">Klein Bottle</a>: generate three types of Klein bottle surfaces
* - <a class="el" href="toroid_8cpp_source.html">Toroid</a>: generate simple toroidal meshes
* - <a class="el" href="twist_8cpp_source.html">Twist</a>: generate simple periodic meshes
* - <a class="el" href="minimal-surface_8cpp_source.html">Minimal Surface</a>: compute minimal surfaces, <a class="el" href="minimal-surface_8cpp_source.html">serial</a> and <a class="el" href="pminimal-surface_8cpp_source.html">parallel</a> versions
* - <a class="el" href="polar-nc_8cpp_source.html">Polar NC</a>: generate polar non-conforming meshes
* - <a class="el" href="shaper_8cpp_source.html">Shaper</a>: resolve material interfaces by mesh refinement
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
@@ -162,7 +157,7 @@ namespace mfem {
* - <a class="el" href="lor-transfer_8cpp_source.html">LOR Transfer</a>: map functions between high-order and low-order refined spaces
* - <a class="el" href="findpts_8cpp_source.html">Find Points</a>: evaluate grid function in physical space, <a class="el" href="findpts_8cpp_source.html">serial</a> and <a class="el" href="pfindpts_8cpp_source.html">parallel</a> versions
* - <a class="el" href="field-diff_8cpp_source.html">Field Diff</a>: compare grid functions on different meshes
* - <a class="el" href="field-interp_8cpp_source.html">Field Interp</a>: transfer a grid functions betwen meshes
* - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
*
+1 -1
View File
@@ -19,7 +19,7 @@ html: $(DOXYGEN_CONF)
@# Generate the html documentation
@doxygen $(DOXYGEN_CONF)
@echo "<meta http-equiv=\"REFRESH\" content=\"0;URL=CodeDocumentation/html/index.html\">" > CodeDocumentation.html
@cat warnings.log 1>&2
@cat warnings.log
@# Generate the log of undocumented methods
@( cat $(DOXYGEN_CONF) ; echo "GENERATE_HTML=NO" ; echo "EXTRACT_ALL=NO" ; echo "WARN_LOGFILE=undoc.log" ; echo "QUIET=YES" ) | doxygen - &> /dev/null
+2 -11
View File
@@ -91,7 +91,7 @@ foreach(SRC_FILE ${ALL_EXE_SRCS})
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
@@ -101,22 +101,13 @@ endforeach()
# If STRUMPACK is enabled, add a test run that uses it.
if (MFEM_USE_STRUMPACK)
add_test(NAME ex11p_strumpack_np=${MFEM_MPI_NP}
add_test(NAME ex11p_strumpack_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex11p> "-no-vis" "--strumpack"
${MPIEXEC_POSTFLAGS})
endif()
# If SuperLU_DIST is enabled, add a test run that uses it.
if (MFEM_USE_SUPERLU)
add_test(NAME ex11p_superlu_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
${MPIEXEC_POSTFLAGS})
endif()
# Include the examples/sundials directory if SUNDIALS is enabled.
if (MFEM_USE_SUNDIALS)
add_subdirectory(sundials)
+32 -36
View File
@@ -34,8 +34,7 @@
// ex1 -pa -d raja-omp
// ex1 -pa -d occa-omp
// ex1 -pa -d ceed-cpu
// * ex1 -pa -d ceed-cuda
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared
// ex1 -pa -d ceed-cuda
// ex1 -m ../data/beam-hex.mesh -pa -d cuda
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
@@ -103,8 +102,8 @@ int main(int argc, char *argv[])
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
@@ -112,10 +111,10 @@ int main(int argc, char *argv[])
// elements.
{
int ref_levels =
(int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
(int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
mesh->UniformRefinement();
}
}
@@ -123,70 +122,66 @@ int main(int argc, char *argv[])
// Lagrange finite elements of the specified order. If order < 1, we
// instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (mesh.GetNodes())
else if (mesh->GetNodes())
{
fec = mesh.GetNodes()->OwnFEC();
delete_fec = false;
fec = mesh->GetNodes()->OwnFEC();
cout << "Using isoparametric FEs: " << fec->Name() << endl;
}
else
{
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
FiniteElementSpace fespace(&mesh, fec);
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
cout << "Number of finite element unknowns: "
<< fespace.GetTrueVSize() << endl;
<< fespace->GetTrueVSize() << endl;
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
// In this example, the boundary conditions are defined by marking all
// the boundary attributes from the mesh as essential (Dirichlet) and
// converting them to a list of true dofs.
Array<int> ess_tdof_list;
if (mesh.bdr_attributes.Size())
if (mesh->bdr_attributes.Size())
{
Array<int> ess_bdr(mesh.bdr_attributes.Max());
Array<int> ess_bdr(mesh->bdr_attributes.Max());
ess_bdr = 1;
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
// the basis functions in the finite element fespace.
LinearForm b(&fespace);
LinearForm *b = new LinearForm(fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
b.Assemble();
b->AddDomainIntegrator(new DomainLFIntegrator(one));
b->Assemble();
// 8. Define the solution vector x as a finite element grid function
// corresponding to fespace. Initialize x with initial guess of zero,
// which satisfies the boundary conditions.
GridFunction x(&fespace);
GridFunction x(fespace);
x = 0.0;
// 9. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
// domain integrator.
BilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
BilinearForm *a = new BilinearForm(fespace);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a->AddDomainIntegrator(new DiffusionIntegrator(one));
// 10. Assemble the bilinear form and the corresponding linear system,
// applying any necessary transformations such as: eliminating boundary
// conditions, applying conforming constraints for non-conforming AMR,
// static condensation, etc.
if (static_cond) { a.EnableStaticCondensation(); }
a.Assemble();
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
OperatorPtr A;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
cout << "Size of linear system: " << A->Height() << endl;
@@ -207,9 +202,9 @@ int main(int argc, char *argv[])
}
else // Jacobi preconditioning in partial assembly mode
{
if (UsesTensorBasis(fespace))
if (UsesTensorBasis(*fespace))
{
OperatorJacobiSmoother M(a, ess_tdof_list);
OperatorJacobiSmoother M(*a, ess_tdof_list);
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
}
else
@@ -219,13 +214,13 @@ int main(int argc, char *argv[])
}
// 12. Recover the solution as a finite element grid function.
a.RecoverFEMSolution(X, b, x);
a->RecoverFEMSolution(X, *b, x);
// 13. Save the refined mesh and the solution. This output can be viewed later
// using GLVis: "glvis -m refined.mesh -g sol.gf".
ofstream mesh_ofs("refined.mesh");
mesh_ofs.precision(8);
mesh.Print(mesh_ofs);
mesh->Print(mesh_ofs);
ofstream sol_ofs("sol.gf");
sol_ofs.precision(8);
x.Save(sol_ofs);
@@ -237,14 +232,15 @@ int main(int argc, char *argv[])
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
sol_sock << "solution\n" << mesh << x << flush;
sol_sock << "solution\n" << *mesh << x << flush;
}
// 15. Free the used memory.
if (delete_fec)
{
delete fec;
}
delete a;
delete b;
delete fespace;
if (order > 0) { delete fec; }
delete mesh;
return 0;
}
+2 -20
View File
@@ -72,7 +72,6 @@ int main(int argc, char *argv[])
int seed = 75;
bool slu_solver = false;
bool sp_solver = false;
bool pardiso_solver = false;
bool visualization = 1;
OptionsParser args(argc, argv);
@@ -96,14 +95,6 @@ int main(int argc, char *argv[])
#ifdef MFEM_USE_STRUMPACK
args.AddOption(&sp_solver, "-sp", "--strumpack", "-no-sp",
"--no-strumpack", "Use the STRUMPACK Solver.");
#endif
#ifdef MFEM_USE_MKL_CPARDISO
args.AddOption(&pardiso_solver,
"-pardiso",
"--pardiso",
"-no-pardiso",
"--no-pardiso",
"Use the MKL Cluster Pardiso Solver.");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
@@ -245,7 +236,7 @@ int main(int argc, char *argv[])
// preconditioner for A to be used within the solver. Set the matrices
// which define the generalized eigenproblem A x = lambda M x.
Solver * precond = NULL;
if (!slu_solver && !sp_solver && !pardiso_solver)
if (!slu_solver && !sp_solver)
{
HypreBoomerAMG * amg = new HypreBoomerAMG(*A);
amg->SetPrintLevel(0);
@@ -277,19 +268,10 @@ int main(int argc, char *argv[])
strumpack->SetFromCommandLine();
precond = strumpack;
}
#endif
#ifdef MFEM_USE_MKL_CPARDISO
if (pardiso_solver)
{
auto pardiso = new CPardisoSolver(A->GetComm());
pardiso->SetMatrixType(CPardisoSolver::MatType::REAL_STRUCTURE_SYMMETRIC);
pardiso->SetPrintLevel(1);
pardiso->SetOperator(*A);
precond = pardiso;
}
#endif
}
HypreLOBPCG * lobpcg = new HypreLOBPCG(MPI_COMM_WORLD);
lobpcg->SetNumModes(nev);
lobpcg->SetRandomSeed(seed);
+8 -3
View File
@@ -88,6 +88,8 @@ private:
Vector funval2;
Vector nor;
Vector fluxN;
IntegrationPoint eip1;
IntegrationPoint eip2;
public:
FaceIntegrator(RiemannSolver &rsolver_, const int dim);
@@ -422,16 +424,19 @@ void FaceIntegrator::AssembleFaceVector(const FiniteElement &el1,
{
const IntegrationPoint &ip = ir->IntPoint(i);
Tr.SetAllIntPoints(&ip); // set face and element int. points
Tr.Loc1.Transform(ip, eip1);
Tr.Loc2.Transform(ip, eip2);
// Calculate basis functions on both elements at the face
el1.CalcShape(Tr.GetElement1IntPoint(), shape1);
el2.CalcShape(Tr.GetElement2IntPoint(), shape2);
el1.CalcShape(eip1, shape1);
el2.CalcShape(eip2, shape2);
// Interpolate elfun at the point
elfun1_mat.MultTranspose(shape1, funval1);
elfun2_mat.MultTranspose(shape2, funval2);
Tr.SetIntPoint(&ip);
// Get the normal vector and the flux on the face
CalcOrtho(Tr.Jacobian(), nor);
const double mcs = rsolver.Eval(funval1, funval2, nor, fluxN);
+36 -39
View File
@@ -32,8 +32,7 @@
// mpirun -np 4 ex1p -pa -d occa-cuda
// mpirun -np 4 ex1p -pa -d raja-omp
// mpirun -np 4 ex1p -pa -d ceed-cpu
// * mpirun -np 4 ex1p -pa -d ceed-cuda
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
// mpirun -np 4 ex1p -pa -d ceed-cuda
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
//
// Description: This example code demonstrates the use of MFEM to define a
@@ -112,8 +111,8 @@ int main(int argc, char *argv[])
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 5. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement. We choose
@@ -121,23 +120,23 @@ int main(int argc, char *argv[])
// more than 10,000 elements.
{
int ref_levels =
(int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
(int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
mesh->UniformRefinement();
}
}
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
int par_ref_levels = 2;
for (int l = 0; l < par_ref_levels; l++)
{
pmesh.UniformRefinement();
pmesh->UniformRefinement();
}
}
@@ -145,16 +144,13 @@ int main(int argc, char *argv[])
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (pmesh.GetNodes())
else if (pmesh->GetNodes())
{
fec = pmesh.GetNodes()->OwnFEC();
delete_fec = false;
fec = pmesh->GetNodes()->OwnFEC();
if (myid == 0)
{
cout << "Using isoparametric FEs: " << fec->Name() << endl;
@@ -163,10 +159,9 @@ int main(int argc, char *argv[])
else
{
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
ParFiniteElementSpace fespace(&pmesh, fec);
HYPRE_Int size = fespace.GlobalTrueVSize();
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
@@ -177,44 +172,44 @@ int main(int argc, char *argv[])
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
if (pmesh.bdr_attributes.Size())
if (pmesh->bdr_attributes.Size())
{
Array<int> ess_bdr(pmesh.bdr_attributes.Max());
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
ess_bdr = 1;
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 9. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system, which in this case is
// (1,phi_i) where phi_i are the basis functions in fespace.
ParLinearForm b(&fespace);
ParLinearForm *b = new ParLinearForm(fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
b.Assemble();
b->AddDomainIntegrator(new DomainLFIntegrator(one));
b->Assemble();
// 10. Define the solution vector x as a parallel finite element grid function
// corresponding to fespace. Initialize x with initial guess of zero,
// which satisfies the boundary conditions.
ParGridFunction x(&fespace);
ParGridFunction x(fespace);
x = 0.0;
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
// domain integrator.
ParBilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
ParBilinearForm *a = new ParBilinearForm(fespace);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a->AddDomainIntegrator(new DiffusionIntegrator(one));
// 12. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation, etc.
if (static_cond) { a.EnableStaticCondensation(); }
a.Assemble();
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
OperatorPtr A;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
// 13. Solve the linear system A X = B.
// * With full assembly, use the BoomerAMG preconditioner from hypre.
@@ -222,9 +217,9 @@ int main(int argc, char *argv[])
Solver *prec = NULL;
if (pa)
{
if (UsesTensorBasis(fespace))
if (UsesTensorBasis(*fespace))
{
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
prec = new OperatorJacobiSmoother(*a, ess_tdof_list);
}
}
else
@@ -242,7 +237,7 @@ int main(int argc, char *argv[])
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a.RecoverFEMSolution(X, b, x);
a->RecoverFEMSolution(X, *b, x);
// 15. Save the refined mesh and the solution in parallel. This output can
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
@@ -253,7 +248,7 @@ int main(int argc, char *argv[])
ofstream mesh_ofs(mesh_name.str().c_str());
mesh_ofs.precision(8);
pmesh.Print(mesh_ofs);
pmesh->Print(mesh_ofs);
ofstream sol_ofs(sol_name.str().c_str());
sol_ofs.precision(8);
@@ -268,14 +263,16 @@ int main(int argc, char *argv[])
socketstream sol_sock(vishost, visport);
sol_sock << "parallel " << num_procs << " " << myid << "\n";
sol_sock.precision(8);
sol_sock << "solution\n" << pmesh << x << flush;
sol_sock << "solution\n" << *pmesh << x << flush;
}
// 17. Free the used memory.
if (delete_fec)
{
delete fec;
}
delete a;
delete b;
delete fespace;
if (order > 0) { delete fec; }
delete pmesh;
MPI_Finalize();
return 0;
-234
View File
@@ -1,234 +0,0 @@
// MFEM Example 1 - Parallel Version
//
// Compile with: make ex1p
//
// Sample runs: mpirun -np 4 ex1p -m ../data/square-disc.mesh
//
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
// 2. Parse command-line options.
const char *mesh_file = "../data/inline-quad.mesh";
int order = 1;
bool static_cond = false;
bool visualization = true;
int sr = 1;
int pr = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&sr, "-sr", "--serial_ref",
"Number of serial refinements");
args.AddOption(&pr, "-pr", "--parallel_ref",
"Number of parallel refinements");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
MPI_Finalize();
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
// 5. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement. We choose
// 'ref_levels' to be the largest number that gives a final mesh with no
// more than 10,000 elements.
{
for (int l = 0; l < sr; l++)
{
mesh.UniformRefinement();
}
}
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
{
for (int l = 0; l < pr; l++)
{
pmesh.UniformRefinement();
}
}
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec = new H1_FECollection(order, dim);
ParFiniteElementSpace fespace(&pmesh, fec);
HYPRE_Int size = fespace.GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
}
// 8. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
if (pmesh.bdr_attributes.Size())
{
Array<int> ess_bdr(pmesh.bdr_attributes.Max());
ess_bdr = 1;
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 9. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system, which in this case is
// (1,phi_i) where phi_i are the basis functions in fespace.
ParLinearForm b(&fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
b.Assemble();
// 10. Define the solution vector x as a parallel finite element grid function
// corresponding to fespace. Initialize x with initial guess of zero,
// which satisfies the boundary conditions.
ParGridFunction x(&fespace);
x = 0.0;
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
// domain integrator.
ParBilinearForm a(&fespace);
a.AddDomainIntegrator(new DiffusionIntegrator(one));
if (static_cond) { a.EnableStaticCondensation(); }
a.Assemble();
HypreParMatrix A;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
// // 13. Solve the linear system A X = B.
// // * With full assembly, use the BoomerAMG preconditioner from hypre.
// // * With partial assembly, use Jacobi smoothing, for now.
StopWatch chrono;
chrono.Clear();
chrono.Start();
HypreBoomerAMG *prec = new HypreBoomerAMG;
prec->SetPrintLevel(0);
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-13);
cg.SetMaxIter(2000);
cg.SetPrintLevel(0);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(A);
cg.Mult(B, X);
delete prec;
if (myid == 0)
{
cout << "PCG-AMG time: " << chrono.RealTime() << endl;
}
chrono.Clear();
chrono.Start();
{
MUMPSSolver MA;
MA.SetMatrixSymType(0);
MA.SetOperator(A);
Vector Y(X.Size());
MA.Mult(B,Y);
Y-=X;
cout << "Mumps Diff norm = " << Y.Norml2() << endl;
}
if (myid == 0)
{
cout << "mumps time: " << chrono.RealTime() << endl;
}
chrono.Clear();
chrono.Start();
{
CPardisoSolver pardiso(A.GetComm());
// pardiso.SetMatrixType(CPardisoSolver::MatType::REAL_STRUCTURE_SYMMETRIC);
pardiso.SetMatrixType(CPardisoSolver::MatType::REAL_UNSYMMETRIC);
pardiso.SetPrintLevel(0);
pardiso.SetOperator(A);
Vector Y(X.Size());
pardiso.Mult(B, Y);
Y-=X;
cout << "Pardiso Diff norm = " << Y.Norml2() << endl;
}
if (myid == 0)
{
cout << "pardiso time: " << chrono.RealTime() << endl;
}
{
SuperLURowLocMatrix SA(A);
SuperLUSolver superlu(MPI_COMM_WORLD);
superlu.SetPrintStatistics(false);
superlu.SetSymmetricPattern(false);
superlu.SetColumnPermutation(superlu::PARMETIS);
superlu.SetOperator(SA);
Vector Y(X.Size());
superlu.Mult(B, Y);
Y-=X;
cout << "Superlu Diff norm = " << Y.Norml2() << endl;
}
if (myid == 0)
{
cout << "superlu time: " << chrono.RealTime() << endl;
}
a.RecoverFEMSolution(X, b, x);
// 16. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock << "parallel " << num_procs << " " << myid << "\n";
sol_sock.precision(8);
sol_sock << "solution\n" << pmesh << x << flush;
}
// 17. Free the used memory.
delete fec;
MPI_Finalize();
return 0;
}
+45 -63
View File
@@ -6,20 +6,13 @@
// ex22 -m ../data/inline-tri.mesh -o 3
// ex22 -m ../data/inline-quad.mesh -o 3
// ex22 -m ../data/inline-quad.mesh -o 3 -p 1
// ex22 -m ../data/inline-quad.mesh -o 3 -p 1 -pa
// ex22 -m ../data/inline-quad.mesh -o 3 -p 2
// ex22 -m ../data/inline-tet.mesh -o 2
// ex22 -m ../data/inline-hex.mesh -o 2
// ex22 -m ../data/inline-hex.mesh -o 2 -p 1
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2 -pa
// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0
//
// Device sample runs:
// ex22 -m ../data/inline-quad.mesh -o 3 -p 1 -pa -d cuda
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2 -pa -d cuda
// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0 -pa -d cuda
//
// Description: This example code demonstrates the use of MFEM to define and
// solve simple complex-valued linear systems. It implements three
// variants of a damped harmonic oscillator:
@@ -83,8 +76,6 @@ int main(int argc, char *argv[])
bool visualization = 1;
bool herm_conv = true;
bool exact_sol = true;
bool pa = false;
const char *device_config = "cpu";
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -115,10 +106,6 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.Parse();
if (!args.Good())
{
@@ -148,18 +135,13 @@ int main(int argc, char *argv[])
ComplexOperator::Convention conv =
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.Print();
// 3. Read the mesh from the given mesh file. We can handle triangular,
// 2. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes
// with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the mesh to increase resolution. In this example we do
// 3. Refine the mesh to increase resolution. In this example we do
// 'ref_levels' of uniform refinement where the user specifies
// the number of levels with the '-r' option.
for (int l = 0; l < ref_levels; l++)
@@ -167,7 +149,7 @@ int main(int argc, char *argv[])
mesh->UniformRefinement();
}
// 5. Define a finite element space on the mesh. Here we use continuous
// 4. Define a finite element space on the mesh. Here we use continuous
// Lagrange, Nedelec, or Raviart-Thomas finite elements of the specified
// order.
if (dim == 1 && prob != 0 )
@@ -189,7 +171,7 @@ int main(int argc, char *argv[])
cout << "Number of finite element unknowns: " << fespace->GetTrueVSize()
<< endl;
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
// In this example, the boundary conditions are defined based on the type
// of mesh and the problem type.
Array<int> ess_tdof_list;
@@ -201,12 +183,12 @@ int main(int argc, char *argv[])
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
// the FEM linear system.
ComplexLinearForm b(fespace, conv);
b.Vector::operator=(0.0);
// 8. Define the solution vector u as a complex finite element grid function
// 7. Define the solution vector u as a complex finite element grid function
// corresponding to fespace. Initialize u with initial guess of 1+0i or
// the exact solution if it is known.
ComplexGridFunction u(fespace);
@@ -228,6 +210,7 @@ int main(int argc, char *argv[])
VectorConstantCoefficient zeroVecCoef(zeroVec);
VectorConstantCoefficient oneVecCoef(oneVec);
u = 0.0;
switch (prob)
{
case 0:
@@ -280,7 +263,7 @@ int main(int argc, char *argv[])
<< "window_title 'Exact: Imaginary Part'" << flush;
}
// 9. Set up the sesquilinear form a(.,.) on the finite element space
// 8. Set up the sesquilinear form a(.,.) on the finite element space
// corresponding to the damped harmonic oscillator operator of the
// appropriate type:
//
@@ -299,7 +282,6 @@ int main(int argc, char *argv[])
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
SesquilinearForm *a = new SesquilinearForm(fespace, conv);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
switch (prob)
{
case 0:
@@ -323,7 +305,7 @@ int main(int argc, char *argv[])
default: break; // This should be unreachable
}
// 9a. Set up the bilinear form for the preconditioner corresponding to the
// 8a. Set up the bilinear form for the preconditioner corresponding to the
// appropriate operator
//
// 0) A scalar H1 field
@@ -336,8 +318,6 @@ int main(int argc, char *argv[])
// -Grad(a Div) - omega^2 b + omega c
//
BilinearForm *pcOp = new BilinearForm(fespace);
if (pa) { pcOp->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
switch (prob)
{
case 0:
@@ -358,9 +338,9 @@ int main(int argc, char *argv[])
default: break; // This should be unreachable
}
// 10. Assemble the form and the corresponding linear system, applying any
// necessary transformations such as: assembly, eliminating boundary
// conditions, conforming constraints for non-conforming AMR, etc.
// 9. Assemble the form and the corresponding linear system, applying any
// necessary transformations such as: assembly, eliminating boundary
// conditions, conforming constraints for non-conforming AMR, etc.
a->Assemble();
pcOp->Assemble();
@@ -368,17 +348,28 @@ int main(int argc, char *argv[])
Vector B, U;
a->FormLinearSystem(ess_tdof_list, u, b, A, U, B);
u = 0.0;
U = 0.0;
cout << "Size of linear system: " << A->Width() << endl << endl;
OperatorHandle PCOp;
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
// 11. Define and apply a GMRES solver for AU=B with a block diagonal
{
ComplexSparseMatrix * Asp =
dynamic_cast<ComplexSparseMatrix*>(A.Ptr());
cout << "Size of linear system: "
<< 2 * Asp->real().Width() << endl << endl;
}
// 10. Define and apply a GMRES solver for AU=B with a block diagonal
// preconditioner based on the appropriate sparse smoother.
{
Array<int> blockOffsets;
blockOffsets.SetSize(3);
blockOffsets[0] = 0;
blockOffsets[1] = A->Height() / 2;
blockOffsets[2] = A->Height() / 2;
blockOffsets[1] = PCOp.Ptr()->Height();
blockOffsets[2] = PCOp.Ptr()->Height();
blockOffsets.PartialSum();
BlockDiagonalPreconditioner BDP(blockOffsets);
@@ -386,31 +377,22 @@ int main(int argc, char *argv[])
Operator * pc_r = NULL;
Operator * pc_i = NULL;
if (pa)
double s = 1.0;
switch (prob)
{
pc_r = new OperatorJacobiSmoother(*pcOp, ess_tdof_list);
case 0:
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
break;
case 1:
pc_r = new GSSmoother(*PCOp.As<SparseMatrix>());
s = -1.0;
break;
case 2:
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
break;
default: break; // This should be unreachable
}
else
{
OperatorHandle PCOp;
pcOp->SetDiagonalPolicy(mfem::Operator::DIAG_ONE);
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
switch (prob)
{
case 0:
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
break;
case 1:
pc_r = new GSSmoother(*PCOp.As<SparseMatrix>());
break;
case 2:
pc_r = new DSmoother(*PCOp.As<SparseMatrix>());
break;
default:
break; // This should be unreachable
}
}
double s = (prob != 1) ? 1.0 : -1.0;
pc_i = new ScaledOperator(pc_r,
(conv == ComplexOperator::HERMITIAN) ?
s:-s);
@@ -428,7 +410,7 @@ int main(int argc, char *argv[])
gmres.Mult(B, U);
}
// 12. Recover the solution as a finite element grid function and compute the
// 11. Recover the solution as a finite element grid function and compute the
// errors if the exact solution is known.
a->RecoverFEMSolution(U, b, u);
@@ -460,7 +442,7 @@ int main(int argc, char *argv[])
cout << endl;
}
// 13. Save the refined mesh and the solution. This output can be viewed
// 12. Save the refined mesh and the solution. This output can be viewed
// later using GLVis: "glvis -m mesh -g sol".
{
ofstream mesh_ofs("refined.mesh");
@@ -475,7 +457,7 @@ int main(int argc, char *argv[])
u.imag().Save(sol_i_ofs);
}
// 14. Send the solution by socket to a GLVis server.
// 13. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
@@ -534,7 +516,7 @@ int main(int argc, char *argv[])
}
}
// 15. Free the used memory.
// 14. Free the used memory.
delete a;
delete u_exact;
delete pcOp;
+47 -66
View File
@@ -7,19 +7,12 @@
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 3
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 3 -p 1
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 3 -p 2
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 1 -p 1 -pa
// mpirun -np 4 ex22p -m ../data/inline-tet.mesh -o 2
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2 -p 1
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2 -p 2
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 1 -p 2 -pa
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0
//
// Device sample runs:
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 1 -p 1 -pa -d cuda
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 1 -p 2 -pa -d cuda
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0 -pa -d cuda
//
// Description: This example code demonstrates the use of MFEM to define and
// solve simple complex-valued linear systems. It implements three
// variants of a damped harmonic oscillator:
@@ -48,6 +41,7 @@
// We recommend viewing examples 1, 3 and 4 before viewing this
// example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
@@ -90,8 +84,6 @@ int main(int argc, char *argv[])
bool visualization = 1;
bool herm_conv = true;
bool exact_sol = true;
bool pa = false;
const char *device_config = "cpu";
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -124,10 +116,6 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.Parse();
if (!args.Good())
{
@@ -164,24 +152,19 @@ int main(int argc, char *argv[])
ComplexOperator::Convention conv =
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
if (myid == 0) { device.Print(); }
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 5. Refine the serial mesh on all processors to increase the resolution.
// 4. Refine the serial mesh on all processors to increase the resolution.
for (int l = 0; l < ser_ref_levels; l++)
{
mesh->UniformRefinement();
}
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
@@ -191,7 +174,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
// 7. Define a parallel finite element space on the parallel mesh. Here we
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange, Nedelec, or Raviart-Thomas finite elements of
// the specified order.
if (dim == 1 && prob != 0 )
@@ -219,7 +202,7 @@ int main(int argc, char *argv[])
cout << "Number of finite element unknowns: " << size << endl;
}
// 8. Determine the list of true (i.e. parallel conforming) essential
// 7. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// based on the type of mesh and the problem type.
Array<int> ess_tdof_list;
@@ -231,14 +214,14 @@ int main(int argc, char *argv[])
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 9. Set up the parallel linear form b(.) which corresponds to the
// 8. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system.
ParComplexLinearForm b(fespace, conv);
b.Vector::operator=(0.0);
// 10. Define the solution vector u as a parallel complex finite element grid
// function corresponding to fespace. Initialize u with initial guess of
// 1+0i or the exact solution if it is known.
// 9. Define the solution vector u as a parallel complex finite element grid
// function corresponding to fespace. Initialize u with initial guess of
// 1+0i or the exact solution if it is known.
ParComplexGridFunction u(fespace);
ParComplexGridFunction * u_exact = NULL;
if (exact_sol) { u_exact = new ParComplexGridFunction(fespace); }
@@ -258,6 +241,7 @@ int main(int argc, char *argv[])
VectorConstantCoefficient zeroVecCoef(zeroVec);
VectorConstantCoefficient oneVecCoef(oneVec);
u = 0.0;
switch (prob)
{
case 0:
@@ -312,7 +296,7 @@ int main(int argc, char *argv[])
<< "window_title 'Exact: Imaginary Part'" << flush;
}
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
// 10. Set up the parallel sesquilinear form a(.,.) on the finite element
// space corresponding to the damped harmonic oscillator operator of the
// appropriate type:
//
@@ -331,7 +315,6 @@ int main(int argc, char *argv[])
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
ParSesquilinearForm *a = new ParSesquilinearForm(fespace, conv);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
switch (prob)
{
case 0:
@@ -355,7 +338,7 @@ int main(int argc, char *argv[])
default: break; // This should be unreachable
}
// 11a. Set up the parallel bilinear form for the preconditioner
// 10a. Set up the parallel bilinear form for the preconditioner
// corresponding to the appropriate operator
//
// 0) A scalar H1 field
@@ -368,7 +351,6 @@ int main(int argc, char *argv[])
// -Grad(a Div) - omega^2 b + omega c
//
ParBilinearForm *pcOp = new ParBilinearForm(fespace);
if (pa) { pcOp->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
switch (prob)
{
case 0:
@@ -389,7 +371,7 @@ int main(int argc, char *argv[])
default: break; // This should be unreachable
}
// 12. Assemble the parallel bilinear form and the corresponding linear
// 11. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, etc.
@@ -400,22 +382,30 @@ int main(int argc, char *argv[])
Vector B, U;
a->FormLinearSystem(ess_tdof_list, u, b, A, U, B);
u = 0.0;
U = 0.0;
OperatorHandle PCOp;
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
if (myid == 0)
{
ComplexHypreParMatrix * Ahyp =
dynamic_cast<ComplexHypreParMatrix*>(A.Ptr());
cout << "Size of linear system: "
<< 2 * fespace->GlobalTrueVSize() << endl << endl;
<< 2 * Ahyp->real().GetGlobalNumRows() << endl << endl;
}
// 13. Define and apply a parallel FGMRES solver for AU=B with a block
// 12. Define and apply a parallel FGMRES solver for AU=B with a block
// diagonal preconditioner based on the appropriate multigrid
// preconditioner from hypre.
{
Array<int> blockTrueOffsets;
blockTrueOffsets.SetSize(3);
blockTrueOffsets[0] = 0;
blockTrueOffsets[1] = A->Height() / 2;
blockTrueOffsets[2] = A->Height() / 2;
blockTrueOffsets[1] = PCOp.Ptr()->Height();
blockTrueOffsets[2] = PCOp.Ptr()->Height();
blockTrueOffsets.PartialSum();
BlockDiagonalPreconditioner BDP(blockTrueOffsets);
@@ -423,34 +413,25 @@ int main(int argc, char *argv[])
Operator * pc_r = NULL;
Operator * pc_i = NULL;
if (pa)
switch (prob)
{
pc_r = new OperatorJacobiSmoother(*pcOp, ess_tdof_list);
}
else
{
OperatorHandle PCOp;
pcOp->FormSystemMatrix(ess_tdof_list, PCOp);
switch (prob)
{
case 0:
pc_r = new HypreBoomerAMG(*PCOp.As<HypreParMatrix>());
break;
case 1:
case 0:
pc_r = new HypreBoomerAMG(*PCOp.As<HypreParMatrix>());
break;
case 1:
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), fespace);
break;
case 2:
if (dim == 2 )
{
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), fespace);
break;
case 2:
if (dim == 2 )
{
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), fespace);
}
else
{
pc_r = new HypreADS(*PCOp.As<HypreParMatrix>(), fespace);
}
break;
default: break; // This should be unreachable
}
}
else
{
pc_r = new HypreADS(*PCOp.As<HypreParMatrix>(), fespace);
}
break;
default: break; // This should be unreachable
}
pc_i = new ScaledOperator(pc_r,
(conv == ComplexOperator::HERMITIAN) ?
@@ -468,7 +449,7 @@ int main(int argc, char *argv[])
fgmres.SetPrintLevel(1);
fgmres.Mult(B, U);
}
// 14. Recover the parallel grid function corresponding to U. This is the
// 13. Recover the parallel grid function corresponding to U. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(U, b, u);
@@ -503,7 +484,7 @@ int main(int argc, char *argv[])
}
}
// 15. Save the refined mesh and the solution in parallel. This output can be
// 14. Save the refined mesh and the solution in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
{
ostringstream mesh_name, sol_r_name, sol_i_name;
@@ -523,7 +504,7 @@ int main(int argc, char *argv[])
u.imag().Save(sol_i_ofs);
}
// 16. Send the solution by socket to a GLVis server.
// 15. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
@@ -588,7 +569,7 @@ int main(int argc, char *argv[])
}
}
// 17. Free the used memory.
// 16. Free the used memory.
delete a;
delete u_exact;
delete pcOp;
+8 -87
View File
@@ -7,7 +7,6 @@
// ex24 -m ../data/beam-tet.mesh
// ex24 -m ../data/beam-hex.mesh -o 2 -pa
// ex24 -m ../data/beam-hex.mesh -o 2 -pa -p 1
// ex24 -m ../data/beam-hex.mesh -o 2 -pa -p 2
// ex24 -m ../data/escher.mesh
// ex24 -m ../data/escher.mesh -o 2
// ex24 -m ../data/fichera.mesh
@@ -25,13 +24,12 @@
// ex24 -m ../data/beam-hex.mesh -pa -d cuda
//
// Description: This example code illustrates usage of mixed finite element
// spaces, with three variants:
// spaces, with two variants:
//
// 1) (grad p, u) for p in H^1 tested against u in H(curl)
// 2) (curl v, u) for v in H(curl) tested against u in H(div), 3D
// 3) (div v, q) for v in H(div) tested against q in L_2
// 2) (div v, q) for v in H(div) tested against q in L_2
//
// Using different approaches, we project the gradient, curl, or
// Using different approaches, we project the gradient or
// divergence to the appropriate space.
//
// We recommend viewing examples 1, 3, and 5 before viewing this
@@ -47,11 +45,8 @@ using namespace mfem;
double p_exact(const Vector &x);
void gradp_exact(const Vector &, Vector &);
double div_gradp_exact(const Vector &x);
void v_exact(const Vector &x, Vector &v);
void curlv_exact(const Vector &x, Vector &cv);
int dim;
double freq = 1.0, kappa;
int main(int argc, char *argv[])
{
@@ -70,7 +65,7 @@ int main(int argc, char *argv[])
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&prob, "-p", "--problem-type",
"Choose between 0: grad, 1: curl, 2: div");
"Choose between 0: H(Curl) or 1: H(Div)");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
@@ -88,7 +83,6 @@ int main(int argc, char *argv[])
return 1;
}
args.PrintOptions(cout);
kappa = freq * M_PI;
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
@@ -125,15 +119,10 @@ int main(int argc, char *argv[])
trial_fec = new H1_FECollection(order, dim);
test_fec = new ND_FECollection(order, dim);
}
else if (prob == 1)
{
trial_fec = new ND_FECollection(order, dim);
test_fec = new RT_FECollection(order-1, dim);
}
else
{
trial_fec = new RT_FECollection(order-1, dim);
test_fec = new L2_FECollection(order-1, dim);
trial_fec = new RT_FECollection(order - 1, dim);
test_fec = new L2_FECollection(order - 1, dim);
}
FiniteElementSpace trial_fes(mesh, trial_fec);
@@ -147,12 +136,6 @@ int main(int argc, char *argv[])
cout << "Number of Nedelec finite element unknowns: " << test_size << endl;
cout << "Number of H1 finite element unknowns: " << trial_size << endl;
}
else if (prob == 1)
{
cout << "Number of Nedelec finite element unknowns: " << trial_size << endl;
cout << "Number of Raviart-Thomas finite element unknowns: " << test_size <<
endl;
}
else
{
cout << "Number of Raviart-Thomas finite element unknowns: "
@@ -167,18 +150,12 @@ int main(int argc, char *argv[])
GridFunction x(&test_fes);
FunctionCoefficient p_coef(p_exact);
VectorFunctionCoefficient gradp_coef(sdim, gradp_exact);
VectorFunctionCoefficient v_coef(sdim, v_exact);
VectorFunctionCoefficient curlv_coef(sdim, curlv_exact);
FunctionCoefficient divgradp_coef(div_gradp_exact);
if (prob == 0)
{
gftrial.ProjectCoefficient(p_coef);
}
else if (prob == 1)
{
gftrial.ProjectCoefficient(v_coef);
}
else
{
gftrial.ProjectCoefficient(gradp_coef);
@@ -202,11 +179,6 @@ int main(int argc, char *argv[])
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
a_mixed.AddDomainIntegrator(new MixedVectorGradientIntegrator(one));
}
else if (prob == 1)
{
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
a_mixed.AddDomainIntegrator(new MixedVectorCurlIntegrator(one));
}
else
{
a.AddDomainIntegrator(new MassIntegrator(one));
@@ -272,10 +244,6 @@ int main(int argc, char *argv[])
{
dlo.AddDomainInterpolator(new GradientInterpolator());
}
else if (prob == 1)
{
dlo.AddDomainInterpolator(new CurlInterpolator());
}
else
{
dlo.AddDomainInterpolator(new DivergenceInterpolator());
@@ -290,10 +258,6 @@ int main(int argc, char *argv[])
{
exact_proj.ProjectCoefficient(gradp_coef);
}
else if (prob == 1)
{
exact_proj.ProjectCoefficient(curlv_coef);
}
else
{
exact_proj.ProjectCoefficient(divgradp_coef);
@@ -312,21 +276,8 @@ int main(int argc, char *argv[])
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
cout << " Gradient interpolant E_h = grad p_h in H(curl): || E_h - grad p"
" ||_{L_2} = " << errInterp << '\n' << endl;
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
"||_{L_2} = " << errProj << '\n' << endl;
}
else if (prob == 1)
{
double errSol = x.ComputeL2Error(curlv_coef);
double errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
double errProj = exact_proj.ComputeL2Error(curlv_coef);
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in H(div): "
"|| E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
cout << " Curl interpolant E_h = curl v_h in H(div): || E_h - curl v "
"||_{L_2} = " << errInterp << '\n' << endl;
cout << " Projection E_h of exact curl v in H(div): || E_h - curl v "
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
"||_{L_2} = " << errProj << '\n' << endl;
}
else
@@ -344,7 +295,7 @@ int main(int argc, char *argv[])
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
cout << " Divergence interpolant f_h = div v_h in L_2: || f_h - div v "
cout << " Divergence interpolant f_h = div v_h in L_2: || f_h - div v"
"||_{L_2} = " << errInterp << '\n' << endl;
cout << " Projection f_h of exact div v in L_2: || f_h - div v "
"||_{L_2} = " << errProj << '\n' << endl;
@@ -420,33 +371,3 @@ double div_gradp_exact(const Vector &x)
return 0.0;
}
void v_exact(const Vector &x, Vector &v)
{
if (dim == 3)
{
v(0) = sin(kappa * x(1));
v(1) = sin(kappa * x(2));
v(2) = sin(kappa * x(0));
}
else
{
v(0) = sin(kappa * x(1));
v(1) = sin(kappa * x(0));
if (x.Size() == 3) { v(2) = 0.0; }
}
}
void curlv_exact(const Vector &x, Vector &cv)
{
if (dim == 3)
{
cv(0) = -kappa * cos(kappa * x(2));
cv(1) = -kappa * cos(kappa * x(0));
cv(2) = -kappa * cos(kappa * x(1));
}
else
{
cv = 0.0;
}
}
+12 -94
View File
@@ -6,8 +6,7 @@
// mpirun -np 4 ex24p -m ../data/square-disc.mesh -o 2
// mpirun -np 4 ex24p -m ../data/beam-tet.mesh
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -pa
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -pa -p 1
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -pa -p 2
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -o 2 -p 1 -pa
// mpirun -np 4 ex24p -m ../data/escher.mesh
// mpirun -np 4 ex24p -m ../data/escher.mesh -o 2
// mpirun -np 4 ex24p -m ../data/fichera.mesh
@@ -25,13 +24,12 @@
// mpirun -np 4 ex24p -m ../data/beam-hex.mesh -pa -d cuda
//
// Description: This example code illustrates usage of mixed finite element
// spaces, with three variants:
// spaces, with two variants:
//
// 1) (grad p, u) for p in H^1 tested against u in H(curl)
// 2) (curl v, u) for v in H(curl) tested against u in H(div), 3D
// 3) (div v, q) for v in H(div) tested against q in L_2
// 2) (div v, q) for v in H(div) tested against q in L_2
//
// Using different approaches, we project the gradient, curl, or
// Using different approaches, we project the gradient or
// divergence to the appropriate space.
//
// We recommend viewing examples 1, 3, and 5 before viewing this
@@ -47,11 +45,8 @@ using namespace mfem;
double p_exact(const Vector &x);
void gradp_exact(const Vector &, Vector &);
double div_gradp_exact(const Vector &x);
void v_exact(const Vector &x, Vector &v);
void curlv_exact(const Vector &x, Vector &cv);
int dim;
double freq = 1.0, kappa;
int main(int argc, char *argv[])
{
@@ -76,7 +71,7 @@ int main(int argc, char *argv[])
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&prob, "-p", "--problem-type",
"Choose between 0: grad, 1: curl, 2: div");
"Choose between 0: H(Curl) or 1: H(Div)");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
@@ -101,7 +96,6 @@ int main(int argc, char *argv[])
{
args.PrintOptions(cout);
}
kappa = freq * M_PI;
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
@@ -153,15 +147,10 @@ int main(int argc, char *argv[])
trial_fec = new H1_FECollection(order, dim);
test_fec = new ND_FECollection(order, dim);
}
else if (prob == 1)
{
trial_fec = new ND_FECollection(order, dim);
test_fec = new RT_FECollection(order-1, dim);
}
else
{
trial_fec = new RT_FECollection(order-1, dim);
test_fec = new L2_FECollection(order-1, dim);
trial_fec = new RT_FECollection(order - 1, dim);
test_fec = new L2_FECollection(order - 1, dim);
}
ParFiniteElementSpace trial_fes(pmesh, trial_fec);
@@ -177,12 +166,6 @@ int main(int argc, char *argv[])
cout << "Number of Nedelec finite element unknowns: " << test_size << endl;
cout << "Number of H1 finite element unknowns: " << trial_size << endl;
}
else if (prob == 1)
{
cout << "Number of Nedelec finite element unknowns: " << trial_size << endl;
cout << "Number of Raviart-Thomas finite element unknowns: " << test_size <<
endl;
}
else
{
cout << "Number of Raviart-Thomas finite element unknowns: "
@@ -198,18 +181,12 @@ int main(int argc, char *argv[])
ParGridFunction x(&test_fes);
FunctionCoefficient p_coef(p_exact);
VectorFunctionCoefficient gradp_coef(sdim, gradp_exact);
VectorFunctionCoefficient v_coef(sdim, v_exact);
VectorFunctionCoefficient curlv_coef(sdim, curlv_exact);
FunctionCoefficient divgradp_coef(div_gradp_exact);
if (prob == 0)
{
gftrial.ProjectCoefficient(p_coef);
}
else if (prob == 1)
{
gftrial.ProjectCoefficient(v_coef);
}
else
{
gftrial.ProjectCoefficient(gradp_coef);
@@ -233,11 +210,6 @@ int main(int argc, char *argv[])
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
a_mixed.AddDomainIntegrator(new MixedVectorGradientIntegrator(one));
}
else if (prob == 1)
{
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
a_mixed.AddDomainIntegrator(new MixedVectorCurlIntegrator(one));
}
else
{
a.AddDomainIntegrator(new MassIntegrator(one));
@@ -321,10 +293,6 @@ int main(int argc, char *argv[])
{
dlo.AddDomainInterpolator(new GradientInterpolator());
}
else if (prob == 1)
{
dlo.AddDomainInterpolator(new CurlInterpolator());
}
else
{
dlo.AddDomainInterpolator(new DivergenceInterpolator());
@@ -339,10 +307,6 @@ int main(int argc, char *argv[])
{
exact_proj.ProjectCoefficient(gradp_coef);
}
else if (prob == 1)
{
exact_proj.ProjectCoefficient(curlv_coef);
}
else
{
exact_proj.ProjectCoefficient(divgradp_coef);
@@ -360,27 +324,11 @@ int main(int argc, char *argv[])
if (myid == 0)
{
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl)"
": || E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
cout << " Gradient interpolant E_h = grad p_h in H(curl): || E_h - grad"
" p ||_{L_2} = " << errInterp << '\n' << endl;
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
"||_{L_2} = " << errProj << '\n' << endl;
}
}
else if (prob == 1)
{
double errSol = x.ComputeL2Error(curlv_coef);
double errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
double errProj = exact_proj.ComputeL2Error(curlv_coef);
if (myid == 0)
{
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in "
"H(div): || E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
cout << " Curl interpolant E_h = curl v_h in H(div): || E_h - curl v "
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
cout << " Gradient interpolant E_h = grad p_h in H(curl): || E_h - grad p"
"||_{L_2} = " << errInterp << '\n' << endl;
cout << " Projection E_h of exact curl v in H(div): || E_h - curl v "
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
"||_{L_2} = " << errProj << '\n' << endl;
}
}
@@ -402,7 +350,7 @@ int main(int argc, char *argv[])
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
cout << " Divergence interpolant f_h = div v_h in L_2: || f_h - div v"
" ||_{L_2} = " << errInterp << '\n' << endl;
"||_{L_2} = " << errInterp << '\n' << endl;
cout << " Projection f_h of exact div v in L_2: || f_h - div v "
"||_{L_2} = " << errProj << '\n' << endl;
}
@@ -488,33 +436,3 @@ double div_gradp_exact(const Vector &x)
return 0.0;
}
void v_exact(const Vector &x, Vector &v)
{
if (dim == 3)
{
v(0) = sin(kappa * x(1));
v(1) = sin(kappa * x(2));
v(2) = sin(kappa * x(0));
}
else
{
v(0) = sin(kappa * x(1));
v(1) = sin(kappa * x(0));
if (x.Size() == 3) { v(2) = 0.0; }
}
}
void curlv_exact(const Vector &x, Vector &cv)
{
if (dim == 3)
{
cv(0) = -kappa * cos(kappa * x(2));
cv(1) = -kappa * cos(kappa * x(0));
cv(2) = -kappa * cos(kappa * x(1));
}
else
{
cv = 0.0;
}
}
+76 -62
View File
@@ -82,24 +82,24 @@ public:
};
// Class for returning the PML coefficients of the bilinear form
class PMLDiagMatrixCoefficient : public VectorCoefficient
class PMLMatrixCoefficient : public MatrixCoefficient
{
private:
CartesianPML * pml = nullptr;
void (*Function)(const Vector &, CartesianPML * , Vector &);
void (*Function)(const Vector &, CartesianPML * , DenseMatrix &);
public:
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
Vector &),
CartesianPML * pml_)
: VectorCoefficient(dim), pml(pml_), Function(F)
PMLMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
DenseMatrix &),
CartesianPML * pml_)
: MatrixCoefficient(dim), pml(pml_), Function(F)
{}
virtual void Eval(Vector &K, ElementTransformation &T,
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip)
{
double x[3];
Vector transip(x, 3);
T.Transform(ip, transip);
K.SetSize(vdim);
K.SetSize(height, width);
(*Function)(transip, pml, K);
}
};
@@ -116,13 +116,13 @@ void source(const Vector &x, Vector & f);
// Functions for computing the necessary coefficients after PML stretching.
// J is the Jacobian matrix of the stretching function
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D);
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D);
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D);
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D);
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D);
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D);
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
Array2D<double> comp_domain_bdr;
Array2D<double> domain_bdr;
@@ -365,19 +365,19 @@ int main(int argc, char *argv[])
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_omeg),NULL);
int cdim = (dim == 2) ? 1 : dim;
PMLDiagMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
PMLDiagMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
ScalarVectorProductCoefficient c1_Re(muinv,pml_c1_Re);
ScalarVectorProductCoefficient c1_Im(muinv,pml_c1_Im);
VectorRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
VectorRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
PMLMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
PMLMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
ScalarMatrixProductCoefficient c1_Re(muinv,pml_c1_Re);
ScalarMatrixProductCoefficient c1_Im(muinv,pml_c1_Im);
MatrixRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
MatrixRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
PMLDiagMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
PMLDiagMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
ScalarVectorProductCoefficient c2_Re(omeg,pml_c2_Re);
ScalarVectorProductCoefficient c2_Im(omeg,pml_c2_Im);
VectorRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
VectorRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
PMLMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
PMLMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
ScalarMatrixProductCoefficient c2_Re(omeg,pml_c2_Re);
ScalarMatrixProductCoefficient c2_Im(omeg,pml_c2_Im);
MatrixRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
MatrixRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
// Integrators inside the PML region
a.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_Re),
@@ -389,22 +389,27 @@ int main(int argc, char *argv[])
// applying any necessary transformations such as: assembly, eliminating
// boundary conditions, applying conforming constraints for
// non-conforming AMR, etc.
a.Assemble(0);
a.Assemble();
OperatorPtr A;
OperatorHandle Ah;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
a.FormLinearSystem(ess_tdof_list, x, b, Ah, X, B);
// 13. Solve using a direct or an iterative solver
// 13. Transform to monolithic SparseMatrix
SparseMatrix *A = Ah.As<ComplexSparseMatrix>()->GetSystemMatrix();
cout << "Size of linear system: " << A->Height() << endl;
// 14. Solve using a direct or an iterative solver
#ifdef MFEM_USE_SUITESPARSE
{
ComplexUMFPackSolver csolver(*A.As<ComplexSparseMatrix>());
csolver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
csolver.SetPrintLevel(1);
csolver.Mult(B, X);
UMFPackSolver solver(*A);
solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
solver.Mult(B, X);
}
#else
// 13a. Set up the Bilinear form a(.,.) for the preconditioner
// 14a. Set up the Bilinear form a(.,.) for the preconditioner
//
// In Comp
// Domain: 1/mu (Curl E, Curl F) + omega^2 * epsilon (E,F)
@@ -419,23 +424,23 @@ int main(int argc, char *argv[])
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_muinv));
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_absomeg));
PMLDiagMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
ScalarVectorProductCoefficient c1_abs(muinv,pml_c1_abs);
VectorRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
PMLMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
ScalarMatrixProductCoefficient c1_abs(muinv,pml_c1_abs);
MatrixRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
PMLDiagMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
ScalarVectorProductCoefficient c2_abs(absomeg,pml_c2_abs);
VectorRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
PMLMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
ScalarMatrixProductCoefficient c2_abs(absomeg,pml_c2_abs);
MatrixRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_abs));
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_abs));
prec.Assemble();
OperatorPtr PCOpAh;
OperatorHandle PCOpAh;
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
// 13b. Define and apply a GMRES solver for AU=B with a block diagonal
// 14b. Define and apply a GMRES solver for AU=B with a block diagonal
// preconditioner based on the Gauss-Seidel sparse smoother.
Array<int> offsets(3);
offsets[0] = 0;
@@ -462,15 +467,17 @@ int main(int argc, char *argv[])
}
#endif
// 14. Recover the solution as a finite element grid function and compute the
// 15. Recover the solution as a finite element grid function and compute the
// errors if the exact solution is known.
a.RecoverFEMSolution(X, b, x);
// If exact is known compute the error
if (exact_known)
{
ComplexGridFunction x_gf(fespace);
VectorFunctionCoefficient E_ex_Re(dim, E_exact_Re);
VectorFunctionCoefficient E_ex_Im(dim, E_exact_Im);
x_gf.ProjectCoefficient(E_ex_Re, E_ex_Im);
int order_quad = max(2, 2 * order + 1);
const IntegrationRule *irs[Geometry::NumGeom];
for (int i = 0; i < Geometry::NumGeom; ++i)
@@ -499,7 +506,7 @@ int main(int argc, char *argv[])
<< sqrt(L2Error_Re*L2Error_Re + L2Error_Im*L2Error_Im) << "\n\n";
}
// 15. Save the refined mesh and the solution. This output can be viewed
// 16. Save the refined mesh and the solution. This output can be viewed
// later using GLVis: "glvis -m mesh -g sol".
{
ofstream mesh_ofs("ex25.mesh");
@@ -514,7 +521,7 @@ int main(int argc, char *argv[])
x.imag().Save(sol_i_ofs);
}
// 16. Send the solution by socket to a GLVis server.
// 17. Send the solution by socket to a GLVis server.
if (visualization)
{
// Define visualization keys for GLVis (see GLVis documentation)
@@ -565,7 +572,8 @@ int main(int argc, char *argv[])
}
}
// 17. Free the used memory.
// 18. Free the used memory.
delete A;
delete pml;
delete fespace;
delete fec;
@@ -763,7 +771,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
}
}
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D)
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det(1.0, 0.0);
@@ -774,13 +782,14 @@ void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D)
det *= dxs[i];
}
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (det / pow(dxs[i], 2)).real();
M(i, i) = (det / pow(dxs[i], 2)).real();
}
}
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D)
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -791,13 +800,14 @@ void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D)
det *= dxs[i];
}
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (det / pow(dxs[i], 2)).imag();
M(i, i) = (det / pow(dxs[i], 2)).imag();
}
}
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D)
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -808,13 +818,14 @@ void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D)
det *= dxs[i];
}
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = abs(det / pow(dxs[i], 2));
M(i, i) = abs(det / pow(dxs[i], 2));
}
}
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D)
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det(1.0, 0.0);
@@ -828,18 +839,19 @@ void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D)
// in the 2D case the coefficient is scalar 1/det(J)
if (dim == 2)
{
D = (1.0 / det).real();
M = (1.0 / det).real();
}
else
{
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (pow(dxs[i], 2) / det).real();
M(i, i) = (pow(dxs[i], 2) / det).real();
}
}
}
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D)
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -852,18 +864,19 @@ void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D)
if (dim == 2)
{
D = (1.0 / det).imag();
M = (1.0 / det).imag();
}
else
{
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (pow(dxs[i], 2) / det).imag();
M(i, i) = (pow(dxs[i], 2) / det).imag();
}
}
}
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D)
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -876,13 +889,14 @@ void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D)
if (dim == 2)
{
D = abs(1.0 / det);
M = abs(1.0 / det);
}
else
{
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = abs(pow(dxs[i], 2) / det);
M(i, i) = abs(pow(dxs[i], 2) / det);
}
}
}
+69 -54
View File
@@ -82,24 +82,24 @@ public:
};
// Class for returning the PML coefficients of the bilinear form
class PMLDiagMatrixCoefficient : public VectorCoefficient
class PMLMatrixCoefficient : public MatrixCoefficient
{
private:
CartesianPML * pml = nullptr;
void (*Function)(const Vector &, CartesianPML * , Vector &);
void (*Function)(const Vector &, CartesianPML * , DenseMatrix &);
public:
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
Vector &),
CartesianPML * pml_)
: VectorCoefficient(dim), pml(pml_), Function(F)
PMLMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
DenseMatrix &),
CartesianPML * pml_)
: MatrixCoefficient(dim), pml(pml_), Function(F)
{}
virtual void Eval(Vector &K, ElementTransformation &T,
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip)
{
double x[3];
Vector transip(x, 3);
T.Transform(ip, transip);
K.SetSize(vdim);
K.SetSize(height, width);
(*Function)(transip, pml, K);
}
};
@@ -116,13 +116,13 @@ void source(const Vector &x, Vector & f);
// Functions for computing the necessary coefficients after PML stretching.
// J is the Jacobian matrix of the stretching function
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D);
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D);
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D);
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D);
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D);
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D);
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M);
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M);
Array2D<double> comp_domain_bdr;
Array2D<double> domain_bdr;
@@ -393,19 +393,19 @@ int main(int argc, char *argv[])
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_omeg),NULL);
int cdim = (dim == 2) ? 1 : dim;
PMLDiagMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
PMLDiagMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
ScalarVectorProductCoefficient c1_Re(muinv,pml_c1_Re);
ScalarVectorProductCoefficient c1_Im(muinv,pml_c1_Im);
VectorRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
VectorRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
PMLMatrixCoefficient pml_c1_Re(cdim,detJ_inv_JT_J_Re, pml);
PMLMatrixCoefficient pml_c1_Im(cdim,detJ_inv_JT_J_Im, pml);
ScalarMatrixProductCoefficient c1_Re(muinv,pml_c1_Re);
ScalarMatrixProductCoefficient c1_Im(muinv,pml_c1_Im);
MatrixRestrictedCoefficient restr_c1_Re(c1_Re,attrPML);
MatrixRestrictedCoefficient restr_c1_Im(c1_Im,attrPML);
PMLDiagMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
PMLDiagMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
ScalarVectorProductCoefficient c2_Re(omeg,pml_c2_Re);
ScalarVectorProductCoefficient c2_Im(omeg,pml_c2_Im);
VectorRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
VectorRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
PMLMatrixCoefficient pml_c2_Re(dim, detJ_JT_J_inv_Re,pml);
PMLMatrixCoefficient pml_c2_Im(dim, detJ_JT_J_inv_Im,pml);
ScalarMatrixProductCoefficient c2_Re(omeg,pml_c2_Re);
ScalarMatrixProductCoefficient c2_Im(omeg,pml_c2_Im);
MatrixRestrictedCoefficient restr_c2_Re(c2_Re,attrPML);
MatrixRestrictedCoefficient restr_c2_Im(c2_Im,attrPML);
// Integrators inside the PML region
a.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_Re),
@@ -419,15 +419,21 @@ int main(int argc, char *argv[])
// constraints for non-conforming AMR, etc.
a.Assemble();
OperatorPtr Ah;
OperatorHandle Ah;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, Ah, X, B);
// 15. Solve using a direct or an iterative solver
// 15. Transform to monolithic HypreParMatrix
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
if (myid == 0)
{
cout << "Size of linear system: " << A->GetGlobalNumRows() << endl;
}
// 16. Solve using a direct or an iterative solver
#ifdef MFEM_USE_SUPERLU
{
// Transform to monolithic HypreParMatrix
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
SuperLURowLocMatrix SA(*A);
SuperLUSolver superlu(MPI_COMM_WORLD);
superlu.SetPrintStatistics(false);
@@ -435,9 +441,9 @@ int main(int argc, char *argv[])
superlu.SetColumnPermutation(superlu::PARMETIS);
superlu.SetOperator(SA);
superlu.Mult(B, X);
delete A;
}
#else
// 16a. Set up the parallel Bilinear form a(.,.) for the preconditioner
//
// In Comp
@@ -453,20 +459,20 @@ int main(int argc, char *argv[])
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_muinv));
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_absomeg));
PMLDiagMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
ScalarVectorProductCoefficient c1_abs(muinv,pml_c1_abs);
VectorRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
PMLMatrixCoefficient pml_c1_abs(cdim,detJ_inv_JT_J_abs, pml);
ScalarMatrixProductCoefficient c1_abs(muinv,pml_c1_abs);
MatrixRestrictedCoefficient restr_c1_abs(c1_abs,attrPML);
PMLDiagMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
ScalarVectorProductCoefficient c2_abs(absomeg,pml_c2_abs);
VectorRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
PMLMatrixCoefficient pml_c2_abs(dim, detJ_JT_J_inv_abs,pml);
ScalarMatrixProductCoefficient c2_abs(absomeg,pml_c2_abs);
MatrixRestrictedCoefficient restr_c2_abs(c2_abs,attrPML);
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_abs));
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_abs));
prec.Assemble();
OperatorPtr PCOpAh;
OperatorHandle PCOpAh;
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
// 16b. Define and apply a parallel GMRES solver for AU=B with a block
@@ -490,7 +496,7 @@ int main(int argc, char *argv[])
gmres.SetMaxIter(2000);
gmres.SetRelTol(1e-5);
gmres.SetAbsTol(0.0);
gmres.SetOperator(*Ah);
gmres.SetOperator(*A);
gmres.SetPreconditioner(BlockAMS);
gmres.Mult(B, X);
}
@@ -503,8 +509,10 @@ int main(int argc, char *argv[])
// If exact is known compute the error
if (exact_known)
{
ParComplexGridFunction x_gf(fespace);
VectorFunctionCoefficient E_ex_Re(dim, E_exact_Re);
VectorFunctionCoefficient E_ex_Im(dim, E_exact_Im);
x_gf.ProjectCoefficient(E_ex_Re, E_ex_Im);
int order_quad = max(2, 2 * order + 1);
const IntegrationRule *irs[Geometry::NumGeom];
for (int i = 0; i < Geometry::NumGeom; ++i)
@@ -621,6 +629,7 @@ int main(int argc, char *argv[])
}
// 20. Free the used memory.
delete A;
delete pml;
delete fespace;
delete fec;
@@ -819,7 +828,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
}
}
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D)
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det(1.0, 0.0);
@@ -830,13 +839,14 @@ void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D)
det *= dxs[i];
}
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (det / pow(dxs[i], 2)).real();
M(i, i) = (det / pow(dxs[i], 2)).real();
}
}
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D)
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -847,13 +857,14 @@ void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D)
det *= dxs[i];
}
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (det / pow(dxs[i], 2)).imag();
M(i, i) = (det / pow(dxs[i], 2)).imag();
}
}
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D)
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -864,13 +875,14 @@ void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D)
det *= dxs[i];
}
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = abs(det / pow(dxs[i], 2));
M(i, i) = abs(det / pow(dxs[i], 2));
}
}
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D)
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det(1.0, 0.0);
@@ -884,18 +896,19 @@ void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D)
// in the 2D case the coefficient is scalar 1/det(J)
if (dim == 2)
{
D = (1.0 / det).real();
M = (1.0 / det).real();
}
else
{
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (pow(dxs[i], 2) / det).real();
M(i, i) = (pow(dxs[i], 2) / det).real();
}
}
}
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D)
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -908,18 +921,19 @@ void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D)
if (dim == 2)
{
D = (1.0 / det).imag();
M = (1.0 / det).imag();
}
else
{
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = (pow(dxs[i], 2) / det).imag();
M(i, i) = (pow(dxs[i], 2) / det).imag();
}
}
}
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D)
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, DenseMatrix &M)
{
vector<complex<double>> dxs(dim);
complex<double> det = 1.0;
@@ -932,13 +946,14 @@ void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D)
if (dim == 2)
{
D = abs(1.0 / det);
M = abs(1.0 / det);
}
else
{
M = 0.0;
for (int i = 0; i < dim; ++i)
{
D(i) = abs(pow(dxs[i], 2) / det);
M(i, i) = abs(pow(dxs[i], 2) / det);
}
}
}
+2 -12
View File
@@ -60,7 +60,6 @@ int main(int argc, char *argv[])
bool static_cond = false;
bool visualization = 1;
bool amg_elast = 0;
bool reorder_space = false;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -76,8 +75,6 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&reorder_space, "-nodes", "--by-nodes", "-vdim", "--by-vdim",
"Use byNODES ordering of vector space instead of byVDIM");
args.Parse();
if (!args.Good())
{
@@ -159,14 +156,7 @@ int main(int argc, char *argv[])
else
{
fec = new H1_FECollection(order, dim);
if (reorder_space)
{
fespace = new ParFiniteElementSpace(pmesh, fec, dim, Ordering::byNODES);
}
else
{
fespace = new ParFiniteElementSpace(pmesh, fec, dim, Ordering::byVDIM);
}
fespace = new ParFiniteElementSpace(pmesh, fec, dim, Ordering::byVDIM);
}
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
@@ -259,7 +249,7 @@ int main(int argc, char *argv[])
}
else
{
amg->SetSystemsOptions(dim, reorder_space);
amg->SetSystemsOptions(dim);
}
HyprePCG *pcg = new HyprePCG(A);
pcg->SetTol(1e-8);
+17 -36
View File
@@ -11,12 +11,6 @@
// ex5 -m ../data/escher.mesh
// ex5 -m ../data/fichera.mesh
//
// Device sample runs:
// ex5 -m ../data/star.mesh -pa -d cuda
// ex5 -m ../data/star.mesh -pa -d raja-cuda
// ex5 -m ../data/star.mesh -pa -d raja-omp
// ex5 -m ../data/beam-hex.mesh -pa -d cuda
//
// Description: This example code solves a simple 2D/3D mixed Darcy problem
// corresponding to the saddle point system
// k*u + grad p = f
@@ -56,7 +50,6 @@ int main(int argc, char *argv[])
const char *mesh_file = "../data/star.mesh";
int order = 1;
bool pa = false;
const char *device_config = "cpu";
bool visualization = 1;
OptionsParser args(argc, argv);
@@ -66,8 +59,6 @@ int main(int argc, char *argv[])
"Finite element order (polynomial degree).");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -79,18 +70,13 @@ int main(int argc, char *argv[])
}
args.PrintOptions(cout);
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.Print();
// 3. Read the mesh from the given mesh file. We can handle triangular,
// 2. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the mesh to increase the resolution. In this example we do
// 3. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
// largest number that gives a final mesh with no more than 10,000
// elements.
@@ -103,7 +89,7 @@ int main(int argc, char *argv[])
}
}
// 5. Define a finite element space on the mesh. Here we use the
// 4. Define a finite element space on the mesh. Here we use the
// Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *hdiv_coll(new RT_FECollection(order, dim));
FiniteElementCollection *l2_coll(new L2_FECollection(order, dim));
@@ -111,7 +97,7 @@ int main(int argc, char *argv[])
FiniteElementSpace *R_space = new FiniteElementSpace(mesh, hdiv_coll);
FiniteElementSpace *W_space = new FiniteElementSpace(mesh, l2_coll);
// 6. Define the BlockStructure of the problem, i.e. define the array of
// 5. Define the BlockStructure of the problem, i.e. define the array of
// offsets for each variable. The last component of the Array is the sum
// of the dimensions of each block.
Array<int> block_offsets(3); // number of variables + 1
@@ -126,7 +112,7 @@ int main(int argc, char *argv[])
std::cout << "dim(R+W) = " << block_offsets.Last() << "\n";
std::cout << "***********************************************************\n";
// 7. Define the coefficients, analytical solution, and rhs of the PDE.
// 6. Define the coefficients, analytical solution, and rhs of the PDE.
ConstantCoefficient k(1.0);
VectorFunctionCoefficient fcoeff(dim, fFun);
@@ -136,28 +122,25 @@ int main(int argc, char *argv[])
VectorFunctionCoefficient ucoeff(dim, uFun_ex);
FunctionCoefficient pcoeff(pFun_ex);
// 8. Allocate memory (x, rhs) for the analytical solution and the right hand
// 7. Allocate memory (x, rhs) for the analytical solution and the right hand
// side. Define the GridFunction u,p for the finite element solution and
// linear forms fform and gform for the right hand side. The data
// allocated by x and rhs are passed as a reference to the grid functions
// (u,p) and the linear forms (fform, gform).
MemoryType mt = device.GetMemoryType();
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
BlockVector x(block_offsets), rhs(block_offsets);
LinearForm *fform(new LinearForm);
fform->Update(R_space, rhs.GetBlock(0), 0);
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(fcoeff));
fform->AddBoundaryIntegrator(new VectorFEBoundaryFluxLFIntegrator(fnatcoeff));
fform->Assemble();
fform->SyncAliasMemory(rhs);
LinearForm *gform(new LinearForm);
gform->Update(W_space, rhs.GetBlock(1), 0);
gform->AddDomainIntegrator(new DomainLFIntegrator(gcoeff));
gform->Assemble();
gform->SyncAliasMemory(rhs);
// 9. Assemble the finite element matrices for the Darcy operator
// 8. Assemble the finite element matrices for the Darcy operator
//
// D = [ M B^T ]
// [ B 0 ]
@@ -202,7 +185,7 @@ int main(int argc, char *argv[])
darcyOp.SetBlock(1,0, &B);
}
// 10. Construct the operators for preconditioner
// 9. Construct the operators for preconditioner
//
// P = [ diag(M) 0 ]
// [ 0 B diag(M)^-1 B^T ]
@@ -219,11 +202,10 @@ int main(int argc, char *argv[])
if (pa)
{
mVarf->AssembleDiagonal(Md);
auto Md_host = Md.HostRead();
Vector invMd(mVarf->Height());
for (int i=0; i<mVarf->Height(); ++i)
{
invMd(i) = 1.0 / Md_host[i];
invMd(i) = 1.0 / Md(i);
}
Vector BMBt_diag(bVarf->Height());
@@ -264,7 +246,7 @@ int main(int argc, char *argv[])
darcyPrec.SetDiagonalBlock(0, invM);
darcyPrec.SetDiagonalBlock(1, invS);
// 11. Solve the linear system with MINRES.
// 10. Solve the linear system with MINRES.
// Check the norm of the unpreconditioned residual.
int maxIter(1000);
double rtol(1.e-6);
@@ -281,7 +263,6 @@ int main(int argc, char *argv[])
solver.SetPrintLevel(1);
x = 0.0;
solver.Mult(rhs, x);
if (device.IsEnabled()) { x.HostRead(); }
chrono.Stop();
if (solver.GetConverged())
@@ -292,7 +273,7 @@ int main(int argc, char *argv[])
<< " iterations. Residual norm is " << solver.GetFinalNorm() << ".\n";
std::cout << "MINRES solver took " << chrono.RealTime() << "s. \n";
// 12. Create the grid functions u and p. Compute the L2 error norms.
// 11. Create the grid functions u and p. Compute the L2 error norms.
GridFunction u, p;
u.MakeRef(R_space, x.GetBlock(0), 0);
p.MakeRef(W_space, x.GetBlock(1), 0);
@@ -312,7 +293,7 @@ int main(int argc, char *argv[])
std::cout << "|| u_h - u_ex || / || u_ex || = " << err_u / norm_u << "\n";
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
// 13. Save the mesh and the solution. This output can be viewed later using
// 12. Save the mesh and the solution. This output can be viewed later using
// GLVis: "glvis -m ex5.mesh -g sol_u.gf" or "glvis -m ex5.mesh -g
// sol_p.gf".
{
@@ -329,13 +310,13 @@ int main(int argc, char *argv[])
p.Save(p_ofs);
}
// 14. Save data in the VisIt format
// 13. Save data in the VisIt format
VisItDataCollection visit_dc("Example5", mesh);
visit_dc.RegisterField("velocity", &u);
visit_dc.RegisterField("pressure", &p);
visit_dc.Save();
// 15. Save data in the ParaView format
// 14. Save data in the ParaView format
ParaViewDataCollection paraview_dc("Example5", mesh);
paraview_dc.SetPrefixPath("ParaView");
paraview_dc.SetLevelsOfDetail(order);
@@ -347,7 +328,7 @@ int main(int argc, char *argv[])
paraview_dc.RegisterField("pressure",&p);
paraview_dc.Save();
// 16. Send the solution by socket to a GLVis server.
// 15. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
@@ -360,7 +341,7 @@ int main(int argc, char *argv[])
p_sock << "solution\n" << *mesh << p << "window_title 'Pressure'" << endl;
}
// 17. Free the used memory.
// 16. Free the used memory.
delete fform;
delete gform;
delete invM;
+21 -42
View File
@@ -11,12 +11,6 @@
// mpirun -np 4 ex5p -m ../data/escher.mesh
// mpirun -np 4 ex5p -m ../data/fichera.mesh
//
// Device sample runs:
// mpirun -np 4 ex5p -m ../data/star.mesh -r 2 -pa -d cuda
// mpirun -np 4 ex5p -m ../data/star.mesh -r 2 -pa -d raja-cuda
// mpirun -np 4 ex5p -m ../data/star.mesh -r 2 -pa -d raja-omp
// mpirun -np 4 ex5p -m ../data/beam-hex.mesh -pa -d cuda
//
// Description: This example code solves a simple 2D/3D mixed Darcy problem
// corresponding to the saddle point system
// k*u + grad p = f
@@ -66,7 +60,6 @@ int main(int argc, char *argv[])
int order = 1;
bool par_format = false;
bool pa = false;
const char *device_config = "cpu";
bool visualization = 1;
bool adios2 = false;
@@ -82,8 +75,6 @@ int main(int argc, char *argv[])
"Format to use when saving the results for VisIt.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -105,18 +96,13 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
if (myid == 0) { device.Print(); }
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 5. Refine the serial mesh on all processors to increase the resolution. In
// 4. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement. We choose
// 'ref_levels' to be the largest number that gives a final mesh with no
// more than 10,000 elements, unless the user specifies it as input.
@@ -132,7 +118,7 @@ int main(int argc, char *argv[])
}
}
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
@@ -145,7 +131,7 @@ int main(int argc, char *argv[])
}
}
// 7. Define a parallel finite element space on the parallel mesh. Here we
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *hdiv_coll(new RT_FECollection(order, dim));
FiniteElementCollection *l2_coll(new L2_FECollection(order, dim));
@@ -165,7 +151,7 @@ int main(int argc, char *argv[])
std::cout << "***********************************************************\n";
}
// 8. Define the two BlockStructure of the problem. block_offsets is used
// 7. Define the two BlockStructure of the problem. block_offsets is used
// for Vector based on dof (like ParGridFunction or ParLinearForm),
// block_trueOffstes is used for Vector based on trueDof (HypreParVector
// for the rhs and solution of the linear system). The offsets computed
@@ -182,7 +168,7 @@ int main(int argc, char *argv[])
block_trueOffsets[2] = W_space->TrueVSize();
block_trueOffsets.PartialSum();
// 9. Define the coefficients, analytical solution, and rhs of the PDE.
// 8. Define the coefficients, analytical solution, and rhs of the PDE.
ConstantCoefficient k(1.0);
VectorFunctionCoefficient fcoeff(dim, fFun);
@@ -192,30 +178,25 @@ int main(int argc, char *argv[])
VectorFunctionCoefficient ucoeff(dim, uFun_ex);
FunctionCoefficient pcoeff(pFun_ex);
// 10. Define the parallel grid function and parallel linear forms, solution
// vector and rhs.
MemoryType mt = device.GetMemoryType();
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
BlockVector trueX(block_trueOffsets, mt), trueRhs(block_trueOffsets, mt);
// 9. Define the parallel grid function and parallel linear forms, solution
// vector and rhs.
BlockVector x(block_offsets), rhs(block_offsets);
BlockVector trueX(block_trueOffsets), trueRhs(block_trueOffsets);
ParLinearForm *fform(new ParLinearForm);
fform->Update(R_space, rhs.GetBlock(0), 0);
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(fcoeff));
fform->AddBoundaryIntegrator(new VectorFEBoundaryFluxLFIntegrator(fnatcoeff));
fform->Assemble();
fform->SyncAliasMemory(rhs);
fform->ParallelAssemble(trueRhs.GetBlock(0));
trueRhs.GetBlock(0).SyncAliasMemory(trueRhs);
ParLinearForm *gform(new ParLinearForm);
gform->Update(W_space, rhs.GetBlock(1), 0);
gform->AddDomainIntegrator(new DomainLFIntegrator(gcoeff));
gform->Assemble();
gform->SyncAliasMemory(rhs);
gform->ParallelAssemble(trueRhs.GetBlock(1));
trueRhs.GetBlock(1).SyncAliasMemory(trueRhs);
// 11. Assemble the finite element matrices for the Darcy operator
// 10. Assemble the finite element matrices for the Darcy operator
//
// D = [ M B^T ]
// [ B 0 ]
@@ -268,7 +249,7 @@ int main(int argc, char *argv[])
darcyOp->SetBlock(1,0, B);
}
// 12. Construct the operators for preconditioner
// 11. Construct the operators for preconditioner
//
// P = [ diag(M) 0 ]
// [ 0 B diag(M)^-1 B^T ]
@@ -285,11 +266,10 @@ int main(int argc, char *argv[])
{
Md_PA.SetSize(R_space->GetTrueVSize());
mVarf->AssembleDiagonal(Md_PA);
auto Md_host = Md_PA.HostRead();
Vector invMd(Md_PA.Size());
for (int i=0; i<Md_PA.Size(); ++i)
{
invMd(i) = 1.0 / Md_host[i];
invMd(i) = 1.0 / Md_PA(i);
}
Vector BMBt_diag(W_space->GetTrueVSize());
@@ -322,7 +302,7 @@ int main(int argc, char *argv[])
darcyPr->SetDiagonalBlock(0, invM);
darcyPr->SetDiagonalBlock(1, invS);
// 13. Solve the linear system with MINRES.
// 12. Solve the linear system with MINRES.
// Check the norm of the unpreconditioned residual.
int maxIter(pa ? 1000 : 500);
double rtol(1.e-6);
@@ -339,7 +319,6 @@ int main(int argc, char *argv[])
solver.SetPrintLevel(verbose);
trueX = 0.0;
solver.Mult(trueRhs, trueX);
if (device.IsEnabled()) { trueX.HostRead(); }
chrono.Stop();
if (verbose)
@@ -353,7 +332,7 @@ int main(int argc, char *argv[])
std::cout << "MINRES solver took " << chrono.RealTime() << "s. \n";
}
// 14. Extract the parallel grid function corresponding to the finite element
// 13. Extract the parallel grid function corresponding to the finite element
// approximation X. This is the local solution on each processor. Compute
// L2 error norms.
ParGridFunction *u(new ParGridFunction);
@@ -381,7 +360,7 @@ int main(int argc, char *argv[])
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
}
// 15. Save the refined mesh and the solution in parallel. This output can be
// 14. Save the refined mesh and the solution in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol_*".
{
ostringstream mesh_name, u_name, p_name;
@@ -402,7 +381,7 @@ int main(int argc, char *argv[])
p->Save(p_ofs);
}
// 16. Save data in the VisIt format
// 15. Save data in the VisIt format
VisItDataCollection visit_dc("Example5-Parallel", pmesh);
visit_dc.RegisterField("velocity", u);
visit_dc.RegisterField("pressure", p);
@@ -411,7 +390,7 @@ int main(int argc, char *argv[])
DataCollection::PARALLEL_FORMAT);
visit_dc.Save();
// 17. Save data in the ParaView format
// 16. Save data in the ParaView format
ParaViewDataCollection paraview_dc("Example5P", pmesh);
paraview_dc.SetPrefixPath("ParaView");
paraview_dc.SetLevelsOfDetail(order);
@@ -423,7 +402,7 @@ int main(int argc, char *argv[])
paraview_dc.RegisterField("pressure",p);
paraview_dc.Save();
// 18. Optionally output a BP (binary pack) file using ADIOS2. This can be
// 17. Optionally output a BP (binary pack) file using ADIOS2. This can be
// visualized with the ParaView VTX reader.
#ifdef MFEM_USE_ADIOS2
if (adios2)
@@ -443,7 +422,7 @@ int main(int argc, char *argv[])
}
#endif
// 19. Send the solution by socket to a GLVis server.
// 18. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
@@ -463,7 +442,7 @@ int main(int argc, char *argv[])
<< endl;
}
// 20. Free the used memory.
// 19. Free the used memory.
delete fform;
delete gform;
delete u;
+4 -9
View File
@@ -20,7 +20,7 @@
// ex6 -pa -d occa-cuda
// ex6 -pa -d raja-omp
// ex6 -pa -d ceed-cpu
// * ex6 -pa -d ceed-cuda
// * ex6 -pa -d ceed-cuda
// ex6 -pa -d ceed-cuda:/gpu/cuda/shared
//
// Description: This is a version of Example 1 with a simple adaptive mesh
@@ -108,11 +108,7 @@ int main(int argc, char *argv[])
// the Laplace problem -\Delta u = 1. We don't assemble the discrete
// problem yet, this will be done in the main loop.
BilinearForm a(&fespace);
if (pa)
{
a.SetAssemblyLevel(AssemblyLevel::PARTIAL);
a.SetDiagonalPolicy(Operator::DIAG_ONE);
}
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
LinearForm b(&fespace);
ConstantCoefficient one(1.0);
@@ -203,10 +199,9 @@ int main(int argc, char *argv[])
umf_solver.Mult(B, X);
#endif
}
else // Diagonal preconditioning in partial assembly mode.
else // No preconditioning for now in partial assembly mode.
{
OperatorJacobiSmoother M(a, ess_tdof_list);
PCG(*A, M, B, X, 3, 2000, 1e-12, 0.0);
CG(*A, B, X, 3, 2000, 1e-12, 0.0);
}
// 18. After solving the linear system, reconstruct the solution as a
+7 -20
View File
@@ -20,7 +20,7 @@
// mpirun -np 4 ex6p -pa -d occa-cuda
// mpirun -np 4 ex6p -pa -d raja-omp
// mpirun -np 4 ex6p -pa -d ceed-cpu
// * mpirun -np 4 ex6p -pa -d ceed-cuda
// * mpirun -np 4 ex6p -pa -d ceed-cuda
// mpirun -np 4 ex6p -pa -d ceed-cuda:/gpu/cuda/shared
//
// Description: This is a version of Example 1 with a simple adaptive mesh
@@ -129,11 +129,7 @@ int main(int argc, char *argv[])
// the Laplace problem -\Delta u = 1. We don't assemble the discrete
// problem yet, this will be done in the main loop.
ParBilinearForm a(&fespace);
if (pa)
{
a.SetAssemblyLevel(AssemblyLevel::PARTIAL);
a.SetDiagonalPolicy(Operator::DIAG_ONE);
}
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
ParLinearForm b(&fespace);
ConstantCoefficient one(1.0);
@@ -224,26 +220,17 @@ int main(int argc, char *argv[])
// 17. Solve the linear system A X = B.
// * With full assembly, use the BoomerAMG preconditioner from hypre.
// * With partial assembly, use a diagonal preconditioner.
Solver *M = NULL;
if (pa)
{
M = new OperatorJacobiSmoother(a, ess_tdof_list);
}
else
{
HypreBoomerAMG *amg = new HypreBoomerAMG;
amg->SetPrintLevel(0);
M = amg;
}
// * With partial assembly, use no preconditioner, for now.
HypreBoomerAMG *amg = NULL;
if (!pa) { amg = new HypreBoomerAMG; amg->SetPrintLevel(0); }
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-6);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3); // print the first and the last iterations only
cg.SetPreconditioner(*M);
if (amg) { cg.SetPreconditioner(*amg); }
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
delete amg;
// 18. Switch back to the host and extract the parallel grid function
// corresponding to the finite element approximation X. This is the
+9 -18
View File
@@ -20,11 +20,8 @@
// Device sample runs:
// ex9 -pa
// ex9 -ea
// ex9 -fa
// ex9 -pa -m ../data/periodic-cube.mesh
// ex9 -pa -m ../data/periodic-cube.mesh -d cuda
// ex9 -ea -m ../data/periodic-cube.mesh -d cuda
// ex9 -fa -m ../data/periodic-cube.mesh -d cuda
//
// Description: This example code solves the time-dependent advection equation
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
@@ -147,7 +144,6 @@ int main(int argc, char *argv[])
int order = 3;
bool pa = false;
bool ea = false;
bool fa = false;
const char *device_config = "cpu";
int ode_solver_type = 4;
double t_final = 10.0;
@@ -174,8 +170,6 @@ int main(int argc, char *argv[])
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&ea, "-ea", "--element-assembly", "-no-ea",
"--no-element-assembly", "Enable Element Assembly.");
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
"--no-full-assembly", "Enable Full Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
@@ -284,11 +278,6 @@ int main(int argc, char *argv[])
m.SetAssemblyLevel(AssemblyLevel::ELEMENT);
k.SetAssemblyLevel(AssemblyLevel::ELEMENT);
}
else if (fa)
{
m.SetAssemblyLevel(AssemblyLevel::FULL);
k.SetAssemblyLevel(AssemblyLevel::FULL);
}
m.AddDomainIntegrator(new MassIntegrator);
k.AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
k.AddInteriorFaceIntegrator(
@@ -448,19 +437,21 @@ int main(int argc, char *argv[])
FE_Evolution::FE_Evolution(BilinearForm &_M, BilinearForm &_K, const Vector &_b)
: TimeDependentOperator(_M.Height()), M(_M), K(_K), b(_b), z(_M.Height())
{
bool pa = M.GetAssemblyLevel() == AssemblyLevel::PARTIAL;
bool ea = M.GetAssemblyLevel() == AssemblyLevel::ELEMENT;
Array<int> ess_tdof_list;
if (M.GetAssemblyLevel() == AssemblyLevel::LEGACYFULL)
{
M_prec = new DSmoother(M.SpMat());
M_solver.SetOperator(M.SpMat());
dg_solver = new DG_Solver(M.SpMat(), K.SpMat(), *M.FESpace());
}
else
if (pa || ea)
{
M_prec = new OperatorJacobiSmoother(M, ess_tdof_list);
M_solver.SetOperator(M);
dg_solver = NULL;
}
else
{
M_prec = new DSmoother(M.SpMat());
dg_solver = new DG_Solver(M.SpMat(), K.SpMat(), *M.FESpace());
M_solver.SetOperator(M.SpMat());
}
M_solver.SetPreconditioner(*M_prec);
M_solver.iterative_mode = false;
M_solver.SetRelTol(1e-9);
+15 -24
View File
@@ -21,11 +21,8 @@
// Device sample runs:
// mpirun -np 4 ex9p -pa
// mpirun -np 4 ex9p -ea
// mpirun -np 4 ex9p -fa
// mpirun -np 4 ex9p -pa -m ../data/periodic-cube.mesh
// mpirun -np 4 ex9p -pa -m ../data/periodic-cube.mesh -d cuda
// mpirun -np 4 ex9p -ea -m ../data/periodic-cube.mesh -d cuda
// mpirun -np 4 ex9p -fa -m ../data/periodic-cube.mesh -d cuda
//
// Description: This example code solves the time-dependent advection equation
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
@@ -167,7 +164,6 @@ int main(int argc, char *argv[])
int order = 3;
bool pa = false;
bool ea = false;
bool fa = false;
const char *device_config = "cpu";
int ode_solver_type = 4;
double t_final = 10.0;
@@ -197,8 +193,6 @@ int main(int argc, char *argv[])
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&ea, "-ea", "--element-assembly", "-no-ea",
"--no-element-assembly", "Enable Element Assembly.");
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
"--no-full-assembly", "Enable Full Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
@@ -335,12 +329,6 @@ int main(int argc, char *argv[])
m->SetAssemblyLevel(AssemblyLevel::ELEMENT);
k->SetAssemblyLevel(AssemblyLevel::ELEMENT);
}
else if (fa)
{
m->SetAssemblyLevel(AssemblyLevel::FULL);
k->SetAssemblyLevel(AssemblyLevel::FULL);
}
m->AddDomainIntegrator(new MassIntegrator);
k->AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
k->AddInteriorFaceIntegrator(
@@ -577,21 +565,29 @@ FE_Evolution::FE_Evolution(ParBilinearForm &_M, ParBilinearForm &_K,
M_solver(_M.ParFESpace()->GetComm()),
z(_M.Height())
{
if (_M.GetAssemblyLevel()==AssemblyLevel::LEGACYFULL)
{
M.Reset(_M.ParallelAssemble(), true);
K.Reset(_K.ParallelAssemble(), true);
}
else
bool pa = _M.GetAssemblyLevel()==AssemblyLevel::PARTIAL;
bool ea = _M.GetAssemblyLevel()==AssemblyLevel::ELEMENT;
if (pa || ea)
{
M.Reset(&_M, false);
K.Reset(&_K, false);
}
else
{
M.Reset(_M.ParallelAssemble(), true);
K.Reset(_K.ParallelAssemble(), true);
}
M_solver.SetOperator(*M);
Array<int> ess_tdof_list;
if (_M.GetAssemblyLevel()==AssemblyLevel::LEGACYFULL)
if (pa || ea)
{
M_prec = new OperatorJacobiSmoother(_M, ess_tdof_list);
dg_solver = NULL;
}
else
{
HypreParMatrix &M_mat = *M.As<HypreParMatrix>();
HypreParMatrix &K_mat = *K.As<HypreParMatrix>();
@@ -600,11 +596,6 @@ FE_Evolution::FE_Evolution(ParBilinearForm &_M, ParBilinearForm &_K,
dg_solver = new DG_Solver(M_mat, K_mat, *_M.FESpace());
}
else
{
M_prec = new OperatorJacobiSmoother(_M, ess_tdof_list);
dg_solver = NULL;
}
M_solver.SetPreconditioner(*M_prec);
M_solver.iterative_mode = false;
-10
View File
@@ -114,16 +114,6 @@ ex11p-test-strumpack: ex11p
@$(call mfem-test,$<, $(RUN_MPI), STRUMPACK example,--strumpack)
test-par-YES: ex11p-test-strumpack
endif
ifeq ($(MFEM_USE_SUPERLU),YES)
ex11p-test-superlu: ex11p
@$(call mfem-test,$<, $(RUN_MPI), SuperLU_DIST example,--superlu)
test-par-YES: ex11p-test-superlu
endif
ifeq ($(MFEM_USE_MKL_CPARDISO),YES)
ex11p-test-superlu: ex11p
@$(call mfem-test,$<, $(RUN_MPI), MKL_CPARDISO example,--pardiso)
test-par-YES: ex11p-test-pardiso
endif
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
+4 -23
View File
@@ -34,15 +34,6 @@ if (MFEM_USE_MPI)
)
endif()
if (MFEM_USE_SLEPC)
list(APPEND PETSC_EXAMPLES_SRCS
ex11p.cpp
)
list(APPEND PETSC_RC_FILES
rc_ex11p_lobpcg rc_ex11p_gd
)
endif()
# Include the source directory where mfem.hpp and mfem-performance.hpp are.
include_directories(BEFORE ${PROJECT_BINARY_DIR})
@@ -87,22 +78,12 @@ set(EX9_E_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts
set(EX9_ES_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl --no-step)
set(EX9_IS_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_impl --implicit -tf 0.5)
set(EX10_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p -tf 30 -s 3 -rs 2 -dt 3)
if (MFEM_USE_SLEPC)
set(EX11_ARGS_SINV -m ../../data/star.mesh --useslepc)
set(EX11_ARGS_LOBPCG -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg)
set(EX11_ARGS_GD -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_gd)
endif()
# Add the tests: one test per command-line-variable.
set(TEST_OPTIONS_VARS
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
if (MFEM_USE_SLEPC)
list(APPEND TEST_OPTIONS_VARS EX11_ARGS_SINV EX11_ARGS_LOBPCG EX11_ARGS_GD)
endif()
foreach(TEST_OPTIONS_VAR ${TEST_OPTIONS_VARS})
foreach(TEST_OPTIONS_VAR
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
string(REGEX REPLACE "^(.+)_ARGS" "\\1" TEST_NAME_UC ${TEST_OPTIONS_VAR})
string(REGEX REPLACE "^([^_]+)" "\\1P" TEST_NAME_UC ${TEST_NAME_UC})
string(TOLOWER ${TEST_NAME_UC} TEST_NAME_FULL)
-440
View File
@@ -1,440 +0,0 @@
// MFEM Example 11 - Parallel Version
// PETSc Modification
//
// Compile with: make ex11p
//
// Sample runs: mpirun -np 4 ex11p -m ../../data/star.mesh
// mpirun -np 4 ex11p -m ../../data/star.mesh --slepcopts rc_ex11p_lobpcg
// mpirun -np 4 ex11p -m ../../data/star.mesh --slepcopts rc_ex11p_gd
//
// Description: This example code demonstrates the use of MFEM to solve the
// eigenvalue problem -Delta u = lambda u with homogeneous
// Dirichlet boundary conditions.
//
// We compute a number of the lowest eigenmodes by discretizing
// the Laplacian and Mass operators using a FE space of the
// specified order, or an isoparametric/isogeometric space if
// order < 1 (quadratic for quadratic curvilinear mesh, NURBS for
// NURBS mesh, etc.)
//
// The example demonstrates the use of the SLEPc eigensolver as an
// alternative to the LOBPCG eigenvalue solver. The shift and
// invert spectral transformation is used to help the convergence
// to the smaller eigenvalues. Alternative solver parameters can
// be passed in a file with "-slepcopts".
//
// Reusing a single GLVis visualization window for multiple
// eigenfunctions is also illustrated.
//
// We recommend viewing Example 1 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#ifndef MFEM_USE_SLEPC
#error This examples requires that MFEM is build with MFEM_USE_SLEPC=YES
#endif
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
// 2. Parse command-line options.
const char *mesh_file = "../../data/star.mesh";
int ser_ref_levels = 2;
int par_ref_levels = 1;
int order = 1;
int nev = 5;
int seed = 75;
bool slu_solver = false;
bool sp_solver = false;
bool visualization = 1;
bool use_slepc = true;
const char *slepcrc_file = "";
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
"Number of times to refine the mesh uniformly in serial.");
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
"Number of times to refine the mesh uniformly in parallel.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&nev, "-n", "--num-eigs",
"Number of desired eigenmodes.");
args.AddOption(&seed, "-s", "--seed",
"Random seed used to initialize LOBPCG.");
#ifdef MFEM_USE_SUPERLU
args.AddOption(&slu_solver, "-slu", "--superlu", "-no-slu",
"--no-superlu", "Use the SuperLU Solver.");
#endif
#ifdef MFEM_USE_STRUMPACK
args.AddOption(&sp_solver, "-sp", "--strumpack", "-no-sp",
"--no-strumpack", "Use the STRUMPACK Solver.");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&use_slepc, "-useslepc","--useslepc","-no-slepc",
"--no-slepc","Use or not SLEPc to solve the eigenvalue problem");
args.AddOption(&slepcrc_file, "-slepcopts", "--slepcopts",
"SlepcOptions file to use.");
args.Parse();
if (slu_solver && sp_solver)
{
if (myid == 0)
cout << "WARNING: Both SuperLU and STRUMPACK have been selected,"
<< " please choose either one." << endl
<< " Defaulting to SuperLU." << endl;
sp_solver = false;
}
// The command line options are also passed to the STRUMPACK
// solver. So do not exit if some options are not recognized.
if (!sp_solver)
{
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
MPI_Finalize();
return 1;
}
}
if (myid == 0)
{
args.PrintOptions(cout);
}
// 2b. We initialize SLEPc. This internally initializes PETSc as well.
MFEMInitializeSlepc(NULL,NULL,slepcrc_file,NULL);
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement (2 by default, or
// specified on the command line with -rs).
for (int lev = 0; lev < ser_ref_levels; lev++)
{
mesh->UniformRefinement();
}
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution (1 time by
// default, or specified on the command line with -rp). Once the parallel
// mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
for (int lev = 0; lev < par_ref_levels; lev++)
{
pmesh->UniformRefinement();
}
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim);
}
else if (pmesh->GetNodes())
{
fec = pmesh->GetNodes()->OwnFEC();
}
else
{
fec = new H1_FECollection(order = 1, dim);
}
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of unknowns: " << size << endl;
}
// 7. Set up the parallel bilinear forms a(.,.) and m(.,.) on the finite
// element space. The first corresponds to the Laplacian operator -Delta,
// while the second is a simple mass matrix needed on the right hand side
// of the generalized eigenvalue problem below. The boundary conditions
// are implemented by elimination with special values on the diagonal to
// shift the Dirichlet eigenvalues out of the computational range. After
// serial and parallel assembly we extract the corresponding parallel
// matrices A and M.
ConstantCoefficient one(1.0);
Array<int> ess_bdr;
if (pmesh->bdr_attributes.Size())
{
ess_bdr.SetSize(pmesh->bdr_attributes.Max());
ess_bdr = 1;
}
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new DiffusionIntegrator(one));
if (pmesh->bdr_attributes.Size() == 0)
{
// Add a mass term if the mesh has no boundary, e.g. periodic mesh or
// closed surface.
a->AddDomainIntegrator(new MassIntegrator(one));
}
a->Assemble();
a->EliminateEssentialBCDiag(ess_bdr, 1.0);
a->Finalize();
ParBilinearForm *m = new ParBilinearForm(fespace);
m->AddDomainIntegrator(new MassIntegrator(one));
m->Assemble();
// shift the eigenvalue corresponding to eliminated dofs to a large value
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
m->Finalize();
PetscParMatrix *pA = NULL, *pM = NULL;
HypreParMatrix *A = NULL, *M = NULL;
Operator::Type tid =
!use_slepc ? Operator::Hypre_ParCSR : Operator::PETSC_MATAIJ;
OperatorHandle Ah(tid), Mh(tid);
a->ParallelAssemble(Ah);
if (!use_slepc) { Ah.Get(A); }
else { Ah.Get(pA); }
Ah.SetOperatorOwner(false);
m->ParallelAssemble(Mh);
if (!use_slepc) {Mh.Get(M); }
else {Mh.Get(pM); }
Mh.SetOperatorOwner(false);
#if defined(MFEM_USE_SUPERLU) || defined(MFEM_USE_STRUMPACK)
Operator * Arow = NULL;
#ifdef MFEM_USE_SUPERLU
if (slu_solver)
{
Arow = new SuperLURowLocMatrix(*A);
}
#endif
#ifdef MFEM_USE_STRUMPACK
if (sp_solver)
{
Arow = new STRUMPACKRowLocMatrix(*A);
}
#endif
#endif
delete a;
delete m;
// 8. Define and configure the LOBPCG eigensolver and the BoomerAMG
// preconditioner for A to be used within the solver. Set the matrices
// which define the generalized eigenproblem A x = lambda M x.
Solver * precond = NULL;
if (!use_slepc)
{
if (!slu_solver && !sp_solver)
{
HypreBoomerAMG * amg = new HypreBoomerAMG(*A);
amg->SetPrintLevel(0);
precond = amg;
}
else
{
#ifdef MFEM_USE_SUPERLU
if (slu_solver)
{
SuperLUSolver * superlu = new SuperLUSolver(MPI_COMM_WORLD);
superlu->SetPrintStatistics(false);
superlu->SetSymmetricPattern(true);
superlu->SetColumnPermutation(superlu::PARMETIS);
superlu->SetOperator(*Arow);
precond = superlu;
}
#endif
#ifdef MFEM_USE_STRUMPACK
if (sp_solver)
{
STRUMPACKSolver * strumpack = new STRUMPACKSolver(argc, argv, MPI_COMM_WORLD);
strumpack->SetPrintFactorStatistics(true);
strumpack->SetPrintSolveStatistics(false);
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack->DisableMatching();
strumpack->SetOperator(*Arow);
strumpack->SetFromCommandLine();
precond = strumpack;
}
#endif
}
}
HypreLOBPCG * lobpcg = NULL;
SlepcEigenSolver * slepc = NULL;
if (!use_slepc)
{
lobpcg = new HypreLOBPCG(MPI_COMM_WORLD);
lobpcg->SetNumModes(nev);
lobpcg->SetRandomSeed(seed);
lobpcg->SetPreconditioner(*precond);
lobpcg->SetMaxIter(200);
lobpcg->SetTol(1e-8);
lobpcg->SetPrecondUsageMode(1);
lobpcg->SetPrintLevel(1);
lobpcg->SetMassMatrix(*M);
lobpcg->SetOperator(*A);
}
else
{
slepc = new SlepcEigenSolver(MPI_COMM_WORLD);
slepc->SetNumModes(nev);
slepc->SetWhichEigenpairs(SlepcEigenSolver::TARGET_REAL);
slepc->SetTarget(0.0);
slepc->SetSpectralTransformation(SlepcEigenSolver::SHIFT_INVERT);
slepc->SetOperators(*pA,*pM);
}
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define a
// parallel grid function to represent each of the eigenmodes returned by
// the solver.
Array<double> eigenvalues;
if (!use_slepc)
{
lobpcg->Solve();
lobpcg->GetEigenvalues(eigenvalues);
}
else
{
slepc->Solve();
eigenvalues.SetSize(nev);
for (int i=0; i<nev; i++)
{
slepc->GetEigenvalue(i,eigenvalues[i]);
}
}
Vector temp(fespace->GetTrueVSize());
ParGridFunction x(fespace);
// 10. Save the refined mesh and the modes in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g mode".
{
ostringstream mesh_name, mode_name;
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
ofstream mesh_ofs(mesh_name.str().c_str());
mesh_ofs.precision(8);
pmesh->Print(mesh_ofs);
for (int i=0; i<nev; i++)
{
// convert eigenvector from HypreParVector to ParGridFunction
if (!use_slepc)
{
x = lobpcg->GetEigenvector(i);
}
else
{
slepc->GetEigenvector(i,temp);
x.Distribute(temp);
}
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
<< setfill('0') << setw(6) << myid;
ofstream mode_ofs(mode_name.str().c_str());
mode_ofs.precision(8);
x.Save(mode_ofs);
mode_name.str("");
}
}
// 11. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream mode_sock(vishost, visport);
mode_sock.precision(8);
for (int i=0; i<nev; i++)
{
if ( myid == 0 )
{
cout << "Eigenmode " << i+1 << '/' << nev
<< ", Lambda = " << eigenvalues[i] << endl;
}
// convert eigenvector from HypreParVector to ParGridFunction
if (!use_slepc)
{
x = lobpcg->GetEigenvector(i);
}
else
{
slepc->GetEigenvector(i,temp);
x.Distribute(temp);
}
mode_sock << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << *pmesh << x << flush
<< "window_title 'Eigenmode " << i+1 << '/' << nev
<< ", Lambda = " << eigenvalues[i] << "'" << endl;
char c;
if (myid == 0)
{
cout << "press (q)uit or (c)ontinue --> " << flush;
cin >> c;
}
MPI_Bcast(&c, 1, MPI_CHAR, 0, MPI_COMM_WORLD);
if (c != 'c')
{
break;
}
}
mode_sock.close();
}
// 12. Free the used memory.
if (!use_slepc)
{
delete lobpcg;
}
else
{
delete slepc;
}
delete precond;
delete M;
delete A;
#if defined(MFEM_USE_SUPERLU) || defined(MFEM_USE_STRUMPACK)
delete Arow;
#endif
delete fespace;
if (order > 0)
{
delete fec;
}
delete pmesh;
// We finalize SLEPc
MFEMFinalizeSlepc();
MPI_Finalize();
return 0;
}
-12
View File
@@ -23,9 +23,6 @@ MFEM_LIB_FILE = mfem_is_not_built
SEQ_EXAMPLES =
PAR_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex9p ex10p
ifeq ($(MFEM_USE_SLEPC),YES)
PAR_EXAMPLES += ex11p
endif
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
@@ -90,9 +87,6 @@ EX10_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p
EX10_MF_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mf -tf 6 -s 3 -rs 0 -dt 3
EX10_MFOP_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mfop -tf 6 -s 3 -rs 0 -dt 3
EX10_JFNK_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_jfnk --jfnk -tf 6 -s 3 -rs 0 -dt 3
EX11_ARGS_SINV := -m ../../data/star.mesh --useslepc
EX11_ARGS_LOBPCG := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg
EX11_ARGS_GD := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_gd
ex1p-test-par: ex1p
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_W))
@@ -120,12 +114,6 @@ ex10p-test-par: ex10p
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_MF_ARGS))
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_MFOP_ARGS))
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_JFNK_ARGS))
ifeq ($(MFEM_USE_SLEPC),YES)
ex11p-test-par: ex11p
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_SINV))
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_LOBPCG))
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_GD))
endif
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
-6
View File
@@ -1,6 +0,0 @@
# Options for the eigenvalue solver
-eps_view
-eps_converged_reason
-eps_type gd
# Options for the spectral transform
-st_type precond
-11
View File
@@ -1,11 +0,0 @@
# Options for the eigenvalue solver
-eps_monitor
-eps_converged_reason
-eps_view_values
-eps_type lobpcg
-eps_gen_hermitian
-eps_smallest_real
-eps_lobpcg_blocksize 5
# Options for the spectral transform
-st_type precond
-st_pc_type gamg
-2
View File
@@ -31,7 +31,6 @@ set(SRCS
bilininteg_vecmass.cpp
coefficient.cpp
complex_fem.cpp
convergence.cpp
datacollection.cpp
eltrans.cpp
estimators.cpp
@@ -66,7 +65,6 @@ set(HDRS
bilininteg.hpp
coefficient.hpp
complex_fem.hpp
convergence.hpp
datacollection.hpp
eltrans.hpp
estimators.hpp
+14 -43
View File
@@ -76,7 +76,7 @@ BilinearForm::BilinearForm(FiniteElementSpace * f)
precompute_sparsity = 0;
diag_policy = DIAG_KEEP;
assembly = AssemblyLevel::LEGACYFULL;
assembly = AssemblyLevel::FULL;
batch = 1;
ext = NULL;
}
@@ -94,7 +94,7 @@ BilinearForm::BilinearForm (FiniteElementSpace * f, BilinearForm * bf, int ps)
precompute_sparsity = ps;
diag_policy = DIAG_KEEP;
assembly = AssemblyLevel::LEGACYFULL;
assembly = AssemblyLevel::FULL;
batch = 1;
ext = NULL;
@@ -121,10 +121,9 @@ void BilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
assembly = assembly_level;
switch (assembly)
{
case AssemblyLevel::LEGACYFULL:
break;
case AssemblyLevel::FULL:
ext = new FABilinearFormExtension(this);
// ext = new FABilinearFormExtension(this);
// Use the original BilinearForm implementation for now
break;
case AssemblyLevel::ELEMENT:
ext = new EABilinearFormExtension(this);
@@ -144,7 +143,7 @@ void BilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
void BilinearForm::EnableStaticCondensation()
{
delete static_cond;
if (assembly != AssemblyLevel::LEGACYFULL)
if (assembly != AssemblyLevel::FULL)
{
static_cond = NULL;
MFEM_WARNING("Static condensation not supported for this assembly level");
@@ -169,7 +168,7 @@ void BilinearForm::EnableHybridization(FiniteElementSpace *constr_space,
const Array<int> &ess_tdof_list)
{
delete hybridization;
if (assembly != AssemblyLevel::LEGACYFULL)
if (assembly != AssemblyLevel::FULL)
{
delete constr_integ;
hybridization = NULL;
@@ -224,7 +223,7 @@ MatrixInverse * BilinearForm::Inverse() const
void BilinearForm::Finalize (int skip_zeros)
{
if (assembly == AssemblyLevel::LEGACYFULL)
if (assembly == AssemblyLevel::FULL)
{
if (!static_cond) { mat->Finalize(skip_zeros); }
if (mat_e) { mat_e->Finalize(skip_zeros); }
@@ -627,33 +626,6 @@ void BilinearForm::AssembleDiagonal(Vector &diag) const
MFEM_ASSERT(diag.Size() == fes->GetTrueVSize(),
"Vector for holding diagonal has wrong size!");
const Operator *P = fes->GetProlongationMatrix();
// For an AMR mesh, a convergent diagonal is assembled with |P^T| d_e,
// where |P^T| has the entry-wise absolute values of the conforming
// prolongation transpose operator.
if (P && !fes->Conforming())
{
Vector local_diag(P->Height());
ext->AssembleDiagonal(local_diag);
const SparseMatrix *SP = dynamic_cast<const SparseMatrix*>(P);
#ifdef MFEM_USE_MPI
const HypreParMatrix *HP = dynamic_cast<const HypreParMatrix*>(P);
#endif
if (SP)
{
SP->AbsMultTranspose(local_diag, diag);
}
#ifdef MFEM_USE_MPI
else if (HP)
{
HP->AbsMultTranspose(1.0, local_diag, 0.0, diag);
}
#endif
else
{
MFEM_ABORT("Prolongation matrix has unexpected type.");
}
return;
}
if (!IsIdentityProlongation(P))
{
Vector local_diag(P->Height());
@@ -667,7 +639,8 @@ void BilinearForm::AssembleDiagonal(Vector &diag) const
}
else
{
mat->GetDiag(diag);
MFEM_ABORT("Not implemented. Maybe assemble your bilinear form into a "
"matrix and use SparseMatrix::GetDiag?");
}
}
@@ -1110,7 +1083,7 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
mat = NULL;
mat_e = NULL;
extern_bfs = 0;
assembly = AssemblyLevel::LEGACYFULL;
assembly = AssemblyLevel::FULL;
ext = NULL;
}
@@ -1135,7 +1108,7 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
bbfi_marker = mbf->bbfi_marker;
btfbfi_marker = mbf->btfbfi_marker;
assembly = AssemblyLevel::LEGACYFULL;
assembly = AssemblyLevel::FULL;
ext = NULL;
}
@@ -1148,8 +1121,6 @@ void MixedBilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
assembly = assembly_level;
switch (assembly)
{
case AssemblyLevel::LEGACYFULL:
break;
case AssemblyLevel::FULL:
// ext = new FAMixedBilinearFormExtension(this);
// Use the original BilinearForm implementation for now
@@ -1220,7 +1191,7 @@ void MixedBilinearForm::AddMultTranspose(const Vector & x, Vector & y,
MatrixInverse * MixedBilinearForm::Inverse() const
{
if (assembly != AssemblyLevel::LEGACYFULL)
if (assembly != AssemblyLevel::FULL)
{
MFEM_WARNING("MixedBilinearForm::Inverse not possible with this assembly level!");
return NULL;
@@ -1233,7 +1204,7 @@ MatrixInverse * MixedBilinearForm::Inverse() const
void MixedBilinearForm::Finalize (int skip_zeros)
{
if (assembly == AssemblyLevel::LEGACYFULL)
if (assembly == AssemblyLevel::FULL)
{
mat -> Finalize (skip_zeros);
}
@@ -1510,7 +1481,7 @@ void MixedBilinearForm::AssembleDiagonal_ADAt(const Vector &D,
void MixedBilinearForm::ConformingAssemble()
{
if (assembly != AssemblyLevel::LEGACYFULL)
if (assembly != AssemblyLevel::FULL)
{
MFEM_WARNING("Conforming assemble not supported for this assembly level!");
return;
+3 -6
View File
@@ -29,11 +29,8 @@ namespace mfem
form classes derived from Operator. */
enum class AssemblyLevel
{
/// Legacy fully assembled form, i.e. a global sparse matrix in MFEM, Hypre
/// or PETSC format. This assembly is ALWAYS performed on the host.
LEGACYFULL = 0,
/// Fully assembled form, i.e. a global sparse matrix in MFEM format. This
/// assembly is compatible with device execution.
/// Fully assembled form, i.e. a global sparse matrix in MFEM, Hypre or PETSC
/// format.
FULL,
/// Form assembled at element level, which computes and stores dense element
/// matrices.
@@ -122,7 +119,7 @@ protected:
static_cond = NULL; hybridization = NULL;
precompute_sparsity = 0;
diag_policy = DIAG_KEEP;
assembly = AssemblyLevel::LEGACYFULL;
assembly = AssemblyLevel::FULL;
batch = 1;
ext = NULL;
}
+42 -204
View File
@@ -15,7 +15,6 @@
#include "../general/forall.hpp"
#include "bilinearform.hpp"
#include "libceed/ceed.hpp"
#include "pgridfunc.hpp"
namespace mfem
{
@@ -96,9 +95,6 @@ void PABilinearFormExtension::Assemble()
integrators[i]->AssemblePA(*a->FESpace());
}
MFEM_VERIFY(a->GetBBFI()->Size() == 0,
"Partial assembly does not support AddBoundaryIntegrator yet.");
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
const int intFaceIntegratorCount = intFaceIntegrators.Size();
for (int i = 0; i < intFaceIntegratorCount; ++i)
@@ -119,7 +115,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int iSz = integrators.Size();
if (elem_restrict && !DeviceCanUseCeed())
if (elem_restrict)
{
localY = 0.0;
for (int i = 0; i < iSz; ++i)
@@ -296,8 +292,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
// Data and methods for element-assembled bilinear forms
EABilinearFormExtension::EABilinearFormExtension(BilinearForm *form)
: PABilinearFormExtension(form),
factorize_face_terms(form->FESpace()->IsDGSpace())
: PABilinearFormExtension(form)
{
}
@@ -310,21 +305,19 @@ void EABilinearFormExtension::Assemble()
ea_data.SetSize(ne*elemDofs*elemDofs, Device::GetMemoryType());
ea_data.UseDevice(true);
ea_data = 0.0;
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int integratorCount = integrators.Size();
for (int i = 0; i < integratorCount; ++i)
{
integrators[i]->AssembleEA(*a->FESpace(), ea_data, i);
integrators[i]->AssembleEA(*a->FESpace(), ea_data);
}
faceDofs = trialFes ->
GetTraceElement(0, trialFes->GetMesh()->GetFaceBaseGeometry(0)) ->
GetDof();
MFEM_VERIFY(a->GetBBFI()->Size() == 0,
"Element assembly does not support AddBoundaryIntegrator yet.");
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
const int intFaceIntegratorCount = intFaceIntegrators.Size();
if (intFaceIntegratorCount>0)
@@ -332,13 +325,14 @@ void EABilinearFormExtension::Assemble()
nf_int = trialFes->GetNFbyType(FaceType::Interior);
ea_data_int.SetSize(2*nf_int*faceDofs*faceDofs, Device::GetMemoryType());
ea_data_ext.SetSize(2*nf_int*faceDofs*faceDofs, Device::GetMemoryType());
ea_data_int = 0.0;
ea_data_ext = 0.0;
}
for (int i = 0; i < intFaceIntegratorCount; ++i)
{
intFaceIntegrators[i]->AssembleEAInteriorFaces(*a->FESpace(),
ea_data_int,
ea_data_ext,
i);
ea_data_ext);
}
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
@@ -351,18 +345,7 @@ void EABilinearFormExtension::Assemble()
}
for (int i = 0; i < boundFaceIntegratorCount; ++i)
{
bdrFaceIntegrators[i]->AssembleEABoundaryFaces(*a->FESpace(),ea_data_bdr,i);
}
if (factorize_face_terms && int_face_restrict_lex)
{
auto restFint = dynamic_cast<const L2FaceRestriction&>(*int_face_restrict_lex);
restFint.AddFaceMatricesToElementMatrices(ea_data_int, ea_data);
}
if (factorize_face_terms && bdr_face_restrict_lex)
{
auto restFbdr = dynamic_cast<const L2FaceRestriction&>(*bdr_face_restrict_lex);
restFbdr.AddFaceMatricesToElementMatrices(ea_data_bdr, ea_data);
bdrFaceIntegrators[i]->AssembleEABoundaryFaces(*a->FESpace(),ea_data_bdr);
}
}
@@ -416,27 +399,24 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
const int NDOFS = faceDofs;
auto X = Reshape(faceIntX.Read(), NDOFS, 2, nf_int);
auto Y = Reshape(faceIntY.ReadWrite(), NDOFS, 2, nf_int);
if (!factorize_face_terms)
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
MFEM_FORALL(glob_j, nf_int*NDOFS,
{
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
MFEM_FORALL(glob_j, nf_int*NDOFS,
const int f = glob_j/NDOFS;
const int j = glob_j%NDOFS;
double res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
const int f = glob_j/NDOFS;
const int j = glob_j%NDOFS;
double res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
res += A_int(i, j, 0, f)*X(i, 0, f);
}
Y(j, 0, f) += res;
res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
res += A_int(i, j, 1, f)*X(i, 1, f);
}
Y(j, 1, f) += res;
});
}
res += A_int(i, j, 0, f)*X(i, 0, f);
}
Y(j, 0, f) += res;
res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
res += A_int(i, j, 1, f)*X(i, 1, f);
}
Y(j, 1, f) += res;
});
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
MFEM_FORALL(glob_j, nf_int*NDOFS,
{
@@ -463,7 +443,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
// Treatment of boundary faces
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
const int bFISz = bdrFaceIntegrators.Size();
if (!factorize_face_terms && bdr_face_restrict_lex && bFISz>0)
if (bdr_face_restrict_lex && bFISz>0)
{
// Apply the Boundary Face Restriction
bdr_face_restrict_lex->Mult(x, faceBdrX);
@@ -542,27 +522,24 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
const int NDOFS = faceDofs;
auto X = Reshape(faceIntX.Read(), NDOFS, 2, nf_int);
auto Y = Reshape(faceIntY.ReadWrite(), NDOFS, 2, nf_int);
if (!factorize_face_terms)
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
MFEM_FORALL(glob_j, nf_int*NDOFS,
{
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
MFEM_FORALL(glob_j, nf_int*NDOFS,
const int f = glob_j/NDOFS;
const int j = glob_j%NDOFS;
double res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
const int f = glob_j/NDOFS;
const int j = glob_j%NDOFS;
double res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
res += A_int(j, i, 0, f)*X(i, 0, f);
}
Y(j, 0, f) += res;
res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
res += A_int(j, i, 1, f)*X(i, 1, f);
}
Y(j, 1, f) += res;
});
}
res += A_int(j, i, 0, f)*X(i, 0, f);
}
Y(j, 0, f) += res;
res = 0.0;
for (int i = 0; i < NDOFS; i++)
{
res += A_int(j, i, 1, f)*X(i, 1, f);
}
Y(j, 1, f) += res;
});
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
MFEM_FORALL(glob_j, nf_int*NDOFS,
{
@@ -589,7 +566,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
// Treatment of boundary faces
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
const int bFISz = bdrFaceIntegrators.Size();
if (!factorize_face_terms && bdr_face_restrict_lex && bFISz>0)
if (bdr_face_restrict_lex && bFISz>0)
{
// Apply the Boundary Face Restriction
bdr_face_restrict_lex->Mult(x, faceBdrX);
@@ -618,139 +595,6 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
}
}
// Data and methods for fully-assembled bilinear forms
FABilinearFormExtension::FABilinearFormExtension(BilinearForm *form)
: EABilinearFormExtension(form),
mat(form->FESpace()->GetVSize(),form->FESpace()->GetVSize(),0),
face_mat(form->FESpace()->GetVSize(),0,0),
use_face_mat(false)
{
#ifdef MFEM_USE_MPI
if ( ParFiniteElementSpace* pfes =
dynamic_cast<ParFiniteElementSpace*>(form->FESpace()) )
{
if (pfes->IsDGSpace())
{
use_face_mat = true;
pfes->ExchangeFaceNbrData();
face_mat.SetWidth(pfes->GetFaceNbrVSize());
}
}
#endif
}
void FABilinearFormExtension::Assemble()
{
EABilinearFormExtension::Assemble();
FiniteElementSpace &fes = *a->FESpace();
if (fes.IsDGSpace())
{
const L2ElementRestriction *restE =
static_cast<const L2ElementRestriction*>(elem_restrict);
const L2FaceRestriction *restF =
static_cast<const L2FaceRestriction*>(int_face_restrict_lex);
// 1. Fill I
// 1.1 Increment with restE
restE->FillI(mat);
// 1.2 Increment with restF
if (restF) { restF->FillI(mat, face_mat); }
// 1.3 Sum the non-zeros in I
auto h_I = mat.HostReadWriteI();
int cpt = 0;
const int vd = fes.GetVDim();
const int ndofs = ne*elemDofs*vd;
for (int i = 0; i < ndofs; i++)
{
const int nnz = h_I[i];
h_I[i] = cpt;
cpt += nnz;
}
const int nnz = cpt;
h_I[ndofs] = nnz;
mat.GetMemoryJ().New(nnz, mat.GetMemoryJ().GetMemoryType());
mat.GetMemoryData().New(nnz, mat.GetMemoryData().GetMemoryType());
if (use_face_mat && restF)
{
auto h_I_face = face_mat.HostReadWriteI();
int cpt = 0;
for (int i = 0; i < ndofs; i++)
{
const int nnz = h_I_face[i];
h_I_face[i] = cpt;
cpt += nnz;
}
const int nnz_face = cpt;
h_I_face[ndofs] = nnz_face;
face_mat.GetMemoryJ().New(nnz_face,
face_mat.GetMemoryJ().GetMemoryType());
face_mat.GetMemoryData().New(nnz_face,
face_mat.GetMemoryData().GetMemoryType());
}
// 2. Fill J and Data
// 2.1 Fill J and Data with Elem ea_data
restE->FillJAndData(ea_data, mat);
// 2.2 Fill J and Data with Face ea_data_ext
if (restF) { restF->FillJAndData(ea_data_ext, mat, face_mat); }
// 2.3 Shift indirections in I back to original
auto I = mat.HostReadWriteI();
for (int i = ndofs; i > 0; i--)
{
I[i] = I[i-1];
}
I[0] = 0;
if (use_face_mat && restF)
{
auto I_face = face_mat.HostReadWriteI();
for (int i = ndofs; i > 0; i--)
{
I_face[i] = I_face[i-1];
}
I_face[0] = 0;
}
}
else // continuous Galerkin case
{
const ElementRestriction &rest =
static_cast<const ElementRestriction&>(*elem_restrict);
rest.FillSparseMatrix(ea_data, mat);
}
}
void FABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
mat.Mult(x, y);
#ifdef MFEM_USE_MPI
if (const ParFiniteElementSpace *pfes =
dynamic_cast<const ParFiniteElementSpace*>(testFes))
{
ParGridFunction x_gf;
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(pfes),
const_cast<Vector&>(x),0);
x_gf.ExchangeFaceNbrData();
Vector &shared_x = x_gf.FaceNbrData();
if (shared_x.Size()) { face_mat.AddMult(shared_x, y); }
}
#endif
}
void FABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
mat.MultTranspose(x, y);
#ifdef MFEM_USE_MPI
if (const ParFiniteElementSpace *pfes =
dynamic_cast<const ParFiniteElementSpace*>(testFes))
{
ParGridFunction x_gf;
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(pfes),
const_cast<Vector&>(x),0);
x_gf.ExchangeFaceNbrData();
Vector &shared_x = x_gf.FaceNbrData();
if (shared_x.Size()) { face_mat.AddMultTranspose(shared_x, y); }
}
#endif
}
MixedBilinearFormExtension::MixedBilinearFormExtension(MixedBilinearForm *form)
: Operator(form->Height(), form->Width()), a(form)
{
@@ -798,12 +642,6 @@ void PAMixedBilinearFormExtension::Assemble()
{
integrators[i]->AssemblePA(*trialFes, *testFes);
}
MFEM_VERIFY(a->GetBBFI()->Size() == 0,
"Partial assembly does not support AddBoundaryIntegrator yet.");
MFEM_VERIFY(a->GetTFBFI()->Size() == 0,
"Partial assembly does not support AddTraceFaceIntegrator yet.");
MFEM_VERIFY(a->GetBTFBFI()->Size() == 0,
"Partial assembly does not support AddBdrTraceFaceIntegrator yet.");
}
void PAMixedBilinearFormExtension::Update()
+21 -19
View File
@@ -62,6 +62,27 @@ public:
virtual void Update() = 0;
};
/** @brief Data and methods for fully-assembled bilinear forms.
Not yet implemented! Use the BilinearForm Class instead. */
class FABilinearFormExtension : public BilinearFormExtension
{
public:
FABilinearFormExtension(BilinearForm *form)
: BilinearFormExtension(form) { }
/// TODO
void Assemble() {}
void FormSystemMatrix(const Array<int> &ess_tdof_list, OperatorHandle &A) {}
void FormLinearSystem(const Array<int> &ess_tdof_list,
Vector &x, Vector &b,
OperatorHandle &A, Vector &X, Vector &B,
int copy_interior = 0) {}
void Mult(const Vector &x, Vector &y) const {}
void MultTranspose(const Vector &x, Vector &y) const {}
void Update() {}
~FABilinearFormExtension() {}
};
/// Data and methods for partially-assembled bilinear forms
class PABilinearFormExtension : public BilinearFormExtension
{
@@ -98,12 +119,10 @@ class EABilinearFormExtension : public PABilinearFormExtension
protected:
int ne;
int elemDofs;
// The element matrices are stored row major
Vector ea_data;
int nf_int, nf_bdr;
int faceDofs;
Vector ea_data_int, ea_data_ext, ea_data_bdr;
bool factorize_face_terms;
public:
EABilinearFormExtension(BilinearForm *form);
@@ -113,23 +132,6 @@ public:
void MultTranspose(const Vector &x, Vector &y) const;
};
/// Data and methods for fully-assembled bilinear forms
class FABilinearFormExtension : public EABilinearFormExtension
{
private:
SparseMatrix mat;
/// face_mat handles parallelism for DG face terms.
SparseMatrix face_mat;
bool use_face_mat;
public:
FABilinearFormExtension(BilinearForm *form);
void Assemble();
void Mult(const Vector &x, Vector &y) const;
void MultTranspose(const Vector &x, Vector &y) const;
};
/// Data and methods for matrix-free bilinear forms NOT YET IMPLEMENTED.
class MFBilinearFormExtension : public BilinearFormExtension
{
+26 -54
View File
@@ -52,8 +52,7 @@ void BilinearFormIntegrator::AssembleDiagonalPA(Vector &)
}
void BilinearFormIntegrator::AssembleEA(const FiniteElementSpace &fes,
Vector &emat,
const bool add)
Vector &emat)
{
mfem_error ("BilinearFormIntegrator::AssembleEA(...)\n"
" is not implemented for this class.");
@@ -62,8 +61,7 @@ void BilinearFormIntegrator::AssembleEA(const FiniteElementSpace &fes,
void BilinearFormIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace
&fes,
Vector &ea_data_int,
Vector &ea_data_ext,
const bool add)
Vector &ea_data_ext)
{
mfem_error ("BilinearFormIntegrator::AssembleEAInteriorFaces(...)\n"
" is not implemented for this class.");
@@ -71,8 +69,7 @@ void BilinearFormIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace
void BilinearFormIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace
&fes,
Vector &ea_data_bdr,
const bool add)
Vector &ea_data_bdr)
{
mfem_error ("BilinearFormIntegrator::AssembleEABoundaryFaces(...)\n"
" is not implemented for this class.");
@@ -929,14 +926,11 @@ void BoundaryMassIntegrator::AssembleFaceMatrix(
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
// Set the integration point in the face and the neighboring element
Trans.SetAllIntPoints(&ip);
// Access the neighboring element's integration point
const IntegrationPoint &eip = Trans.GetElement1IntPoint();
IntegrationPoint eip;
Trans.Loc1.Transform(ip, eip);
el1.CalcShape(eip, shape);
Trans.SetIntPoint(&ip);
w = Trans.Weight() * ip.weight;
if (Q)
{
@@ -1525,7 +1519,6 @@ void CurlCurlIntegrator::AssembleElementMatrix
double w;
#ifdef MFEM_THREAD_SAFE
Vector D;
DenseMatrix curlshape(nd,dimc), curlshape_dFt(nd,dimc), M;
#else
curlshape.SetSize(nd,dimc);
@@ -1533,7 +1526,6 @@ void CurlCurlIntegrator::AssembleElementMatrix
#endif
elmat.SetSize(nd);
if (MQ) { M.SetSize(dimc); }
if (DQ) { D.SetSize(dimc); }
const IntegrationRule *ir = IntRule;
if (ir == NULL)
@@ -1577,12 +1569,6 @@ void CurlCurlIntegrator::AssembleElementMatrix
Mult(curlshape_dFt, M, curlshape);
AddMultABt(curlshape, curlshape_dFt, elmat);
}
else if (DQ)
{
DQ->Eval(D, Trans, ip);
D *= w;
AddMultADAt(curlshape_dFt, D, elmat);
}
else if (Q)
{
w *= Q->Eval(Trans, ip);
@@ -2585,17 +2571,16 @@ void DGTraceIntegrator::AssembleFaceMatrix(const FiniteElement &el1,
for (int p = 0; p < ir->GetNPoints(); p++)
{
const IntegrationPoint &ip = ir->IntPoint(p);
// Set the integration point in the face and the neighboring elements
Trans.SetAllIntPoints(&ip);
// Access the neighboring elements' integration points
// Note: eip2 will only contain valid data if Elem2 exists
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
IntegrationPoint eip1, eip2;
Trans.Loc1.Transform(ip, eip1);
if (ndof2)
{
Trans.Loc2.Transform(ip, eip2);
}
el1.CalcShape(eip1, shape1);
Trans.SetIntPoint(&ip);
u->Eval(vu, *Trans.Elem1, eip1);
if (dim == 1)
@@ -2742,15 +2727,10 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
for (int p = 0; p < ir->GetNPoints(); p++)
{
const IntegrationPoint &ip = ir->IntPoint(p);
IntegrationPoint eip1, eip2;
// Set the integration point in the face and the neighboring elements
Trans.SetAllIntPoints(&ip);
// Access the neighboring elements' integration points
// Note: eip2 will only contain valid data if Elem2 exists
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
Trans.Loc1.Transform(ip, eip1);
Trans.SetIntPoint(&ip);
if (dim == 1)
{
nor(0) = 2*eip1.x - 1.0;
@@ -2807,6 +2787,7 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
if (ndof2)
{
Trans.Loc2.Transform(ip, eip2);
el2.CalcShape(eip2, shape2);
el2.CalcDShape(eip2, dshape2);
w = ip.weight/2/Trans.Elem2->Weight();
@@ -3024,14 +3005,9 @@ void DGElasticityIntegrator::AssembleFaceMatrix(
for (int pind = 0; pind < ir->GetNPoints(); ++pind)
{
const IntegrationPoint &ip = ir->IntPoint(pind);
// Set the integration point in the face and the neighboring elements
Trans.SetAllIntPoints(&ip);
// Access the neighboring elements' integration points
// Note: eip2 will only contain valid data if Elem2 exists
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
IntegrationPoint eip1, eip2; // integration point in the reference space
Trans.Loc1.Transform(ip, eip1);
Trans.SetIntPoint(&ip);
el1.CalcShape(eip1, shape1);
el1.CalcDShape(eip1, dshape1);
@@ -3051,6 +3027,7 @@ void DGElasticityIntegrator::AssembleFaceMatrix(
double w, wLM;
if (ndofs2)
{
Trans.Loc2.Transform(ip, eip2);
el2.CalcShape(eip2, shape2);
el2.CalcDShape(eip2, dshape2);
CalcAdjugate(Trans.Elem2->Jacobian(), adjJ);
@@ -3188,22 +3165,17 @@ void TraceJumpIntegrator::AssembleFaceMatrix(
for (int p = 0; p < ir->GetNPoints(); p++)
{
const IntegrationPoint &ip = ir->IntPoint(p);
// Set the integration point in the face and the neighboring elements
Trans.SetAllIntPoints(&ip);
// Access the neighboring elements' integration points
// Note: eip2 will only contain valid data if Elem2 exists
const IntegrationPoint &eip1 = Trans.GetElement1IntPoint();
const IntegrationPoint &eip2 = Trans.GetElement2IntPoint();
IntegrationPoint eip1, eip2;
// Trace finite element shape function
Trans.SetIntPoint(&ip);
trial_face_fe.CalcShape(ip, face_shape);
// Side 1 finite element shape function
Trans.Loc1.Transform(ip, eip1);
test_fe1.CalcShape(eip1, shape1);
if (ndof2)
{
// Side 2 finite element shape function
Trans.Loc2.Transform(ip, eip2);
test_fe2.CalcShape(eip2, shape2);
}
w = ip.weight;
+19 -79
View File
@@ -20,13 +20,6 @@
namespace mfem
{
// Local maximum size of dofs and quads in 1D
constexpr int HCURL_MAX_D1D = 5;
constexpr int HCURL_MAX_Q1D = 6;
constexpr int HDIV_MAX_D1D = 5;
constexpr int HDIV_MAX_Q1D = 6;
/// Abstract base class BilinearFormIntegrator
class BilinearFormIntegrator : public NonlinearFormIntegrator
{
@@ -86,10 +79,9 @@ public:
virtual void AddMultTransposePA(const Vector &x, Vector &y) const;
/// Method defining element assembly.
/** The result of the element assembly is added to the @a emat Vector if
@a add is true. Otherwise, if @a add is false, we set @a emat. */
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
const bool add = true);
/** The result of the element assembly is added and stored in the @a emat
Vector. */
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat);
/** Used with BilinearFormIntegrators that have different spaces. */
// virtual void AssembleEA(const FiniteElementSpace &trial_fes,
// const FiniteElementSpace &test_fes,
@@ -97,12 +89,10 @@ public:
virtual void AssembleEAInteriorFaces(const FiniteElementSpace &fes,
Vector &ea_data_int,
Vector &ea_data_ext,
const bool add = true);
Vector &ea_data_ext);
virtual void AssembleEABoundaryFaces(const FiniteElementSpace &fes,
Vector &ea_data_bdr,
const bool add = true);
Vector &ea_data_bdr);
/// Given a particular Finite Element computes the element matrix elmat.
virtual void AssembleElementMatrix(const FiniteElement &el,
@@ -265,17 +255,14 @@ public:
bfi->AddMultTransposePA(x, y);
}
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
const bool add);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat);
virtual void AssembleEAInteriorFaces(const FiniteElementSpace &fes,
Vector &ea_data_int,
Vector &ea_data_ext,
const bool add);
Vector &ea_data_ext);
virtual void AssembleEABoundaryFaces(const FiniteElementSpace &fes,
Vector &ea_data_bdr,
const bool add);
Vector &ea_data_bdr);
virtual ~TransposeIntegrator() { if (own_bfi) { delete bfi; } }
};
@@ -1698,22 +1685,6 @@ protected:
{
trial_fe.CalcPhysCurlShape(Trans, shape);
}
using BilinearFormIntegrator::AssemblePA;
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
const FiniteElementSpace &test_fes);
virtual void AddMultPA(const Vector&, Vector&) const;
private:
// PA extension
Vector pa_data;
const DofToQuad *mapsO; ///< Not owned. DOF-to-quad map, open.
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
const DofToQuad *mapsOtest; ///< Not owned. DOF-to-quad map, open.
const DofToQuad *mapsCtest; ///< Not owned. DOF-to-quad map, closed.
const GeometricFactors *geom; ///< Not owned
int dim, ne, dofs1D, dofs1Dtest,quad1D, testType, trialType, coeffDim;
};
/** Class for integrating the bilinear form a(u,v) := (Q u, curl v) in 3D and
@@ -1753,20 +1724,6 @@ protected:
{
test_fe.CalcPhysCurlShape(Trans, shape);
}
using BilinearFormIntegrator::AssemblePA;
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
const FiniteElementSpace &test_fes);
virtual void AddMultPA(const Vector&, Vector&) const;
private:
// PA extension
Vector pa_data;
const DofToQuad *mapsO; ///< Not owned. DOF-to-quad map, open.
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
const GeometricFactors *geom; ///< Not owned
int dim, ne, dofs1D, quad1D, testType, trialType, coeffDim;
};
/** Class for integrating the bilinear form a(u,v) := - (Q u, grad v) in either
@@ -1958,8 +1915,7 @@ public:
virtual void AssemblePA(const FiniteElementSpace &fes);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
const bool add);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat);
virtual void AssembleDiagonalPA(Vector &diag);
@@ -1968,7 +1924,7 @@ public:
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
const FiniteElement &test_fe);
void SetupPA(const FiniteElementSpace &fes);
void SetupPA(const FiniteElementSpace &fes, const bool force = false);
};
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
@@ -2034,8 +1990,7 @@ public:
virtual void AssemblePA(const FiniteElementSpace &fes);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
const bool add);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat);
virtual void AssembleDiagonalPA(Vector &diag);
@@ -2045,7 +2000,7 @@ public:
const FiniteElement &test_fe,
ElementTransformation &Trans);
void SetupPA(const FiniteElementSpace &fes);
void SetupPA(const FiniteElementSpace &fes, const bool force = false);
};
/** Mass integrator (u, v) restricted to the boundary of a domain */
@@ -2091,8 +2046,7 @@ public:
virtual void AssemblePA(const FiniteElementSpace&);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
const bool add);
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat);
virtual void AddMultPA(const Vector&, Vector&) const;
@@ -2309,14 +2263,12 @@ class CurlCurlIntegrator: public BilinearFormIntegrator
private:
Vector vec, pointflux;
#ifndef MFEM_THREAD_SAFE
Vector D;
DenseMatrix curlshape, curlshape_dFt, M;
DenseMatrix vshape, projcurl;
#endif
protected:
Coefficient *Q;
VectorCoefficient *DQ;
MatrixCoefficient *MQ;
// PA extension
@@ -2325,17 +2277,12 @@ protected:
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
const GeometricFactors *geom; ///< Not owned
int dim, ne, nq, dofs1D, quad1D;
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
public:
CurlCurlIntegrator() { Q = NULL; DQ = NULL; MQ = NULL; }
CurlCurlIntegrator() { Q = NULL; MQ = NULL; }
/// Construct a bilinear form integrator for Nedelec elements
CurlCurlIntegrator(Coefficient &q, const IntegrationRule *ir = NULL) :
BilinearFormIntegrator(ir), Q(&q) { DQ = NULL; MQ = NULL; }
CurlCurlIntegrator(VectorCoefficient &dq, const IntegrationRule *ir = NULL) :
BilinearFormIntegrator(ir), DQ(&dq) { Q = NULL; MQ = NULL; }
CurlCurlIntegrator(MatrixCoefficient &mq, const IntegrationRule *ir = NULL) :
BilinearFormIntegrator(ir), MQ(&mq) { Q = NULL; DQ = NULL; }
CurlCurlIntegrator(Coefficient &q) : Q(&q) { MQ = NULL; }
CurlCurlIntegrator(MatrixCoefficient &m) : MQ(&m) { Q = NULL; }
/* Given a particular Finite Element, compute the
element curl-curl matrix elmat */
@@ -2413,11 +2360,8 @@ protected:
Vector pa_data;
const DofToQuad *mapsO; ///< Not owned. DOF-to-quad map, open.
const DofToQuad *mapsC; ///< Not owned. DOF-to-quad map, closed.
const DofToQuad *mapsOtest; ///< Not owned. DOF-to-quad map, open.
const DofToQuad *mapsCtest; ///< Not owned. DOF-to-quad map, closed.
const GeometricFactors *geom; ///< Not owned
int dim, ne, nq, dofs1D, dofs1Dtest, quad1D, trial_fetype, test_fetype;
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
int dim, ne, nq, dofs1D, quad1D, fetype;
public:
VectorFEMassIntegrator() { Init(NULL, NULL, NULL); }
@@ -2438,8 +2382,6 @@ public:
using BilinearFormIntegrator::AssemblePA;
virtual void AssemblePA(const FiniteElementSpace &fes);
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
const FiniteElementSpace &test_fes);
virtual void AddMultPA(const Vector &x, Vector &y) const;
virtual void AssembleDiagonalPA(Vector& diag);
};
@@ -2669,12 +2611,10 @@ public:
virtual void AssembleEAInteriorFaces(const FiniteElementSpace& fes,
Vector &ea_data_int,
Vector &ea_data_ext,
const bool add);
Vector &ea_data_ext);
virtual void AssembleEABoundaryFaces(const FiniteElementSpace& fes,
Vector &ea_data_bdr,
const bool add);
Vector &ea_data_bdr);
static const IntegrationRule &GetRule(Geometry::Type geom, int order,
FaceElementTransformations &T);
+33 -61
View File
@@ -22,7 +22,6 @@ static void EAConvectionAssemble1D(const int NE,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -33,7 +32,7 @@ static void EAConvectionAssemble1D(const int NE,
auto B = Reshape(b.Read(), Q1D, D1D);
auto G = Reshape(g.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, NE);
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
auto A = Reshape(eadata.Write(), D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -55,14 +54,7 @@ static void EAConvectionAssemble1D(const int NE,
{
val += r_Bj[k1] * D(k1, e) * r_Gi[k1];
}
if (add)
{
A(i1, j1, e) += val;
}
else
{
A(i1, j1, e) = val;
}
A(i1, j1, e) = val;
}
}
});
@@ -74,7 +66,6 @@ static void EAConvectionAssemble2D(const int NE,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -85,7 +76,7 @@ static void EAConvectionAssemble2D(const int NE,
auto B = Reshape(b.Read(), Q1D, D1D);
auto G = Reshape(g.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, Q1D, 2, NE);
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -130,14 +121,7 @@ static void EAConvectionAssemble2D(const int NE,
* r_B[k1][j1]* r_B[k2][j2];
}
}
if (add)
{
A(i1, i2, j1, j2, e) += val;
}
else
{
A(i1, i2, j1, j2, e) = val;
}
A(i1, i2, j1, j2, e) = val;
}
}
}
@@ -151,7 +135,6 @@ static void EAConvectionAssemble3D(const int NE,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -162,7 +145,7 @@ static void EAConvectionAssemble3D(const int NE,
auto B = Reshape(b.Read(), Q1D, D1D);
auto G = Reshape(g.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 3, NE);
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -208,14 +191,7 @@ static void EAConvectionAssemble3D(const int NE,
}
}
}
if (add)
{
A(i1, i2, i3, j1, j2, j3, e) += val;
}
else
{
A(i1, i2, i3, j1, j2, j3, e) = val;
}
A(i1, i2, i3, j1, j2, j3, e) = val;
}
}
}
@@ -226,8 +202,7 @@ static void EAConvectionAssemble3D(const int NE,
}
void ConvectionIntegrator::AssembleEA(const FiniteElementSpace &fes,
Vector &ea_data,
const bool add)
Vector &ea_data)
{
AssemblePA(fes);
const int ne = fes.GetMesh()->GetNE();
@@ -237,47 +212,44 @@ void ConvectionIntegrator::AssembleEA(const FiniteElementSpace &fes,
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EAConvectionAssemble1D<2,2>(ne,B,G,pa_data,ea_data,add);
case 0x33: return EAConvectionAssemble1D<3,3>(ne,B,G,pa_data,ea_data,add);
case 0x44: return EAConvectionAssemble1D<4,4>(ne,B,G,pa_data,ea_data,add);
case 0x55: return EAConvectionAssemble1D<5,5>(ne,B,G,pa_data,ea_data,add);
case 0x66: return EAConvectionAssemble1D<6,6>(ne,B,G,pa_data,ea_data,add);
case 0x77: return EAConvectionAssemble1D<7,7>(ne,B,G,pa_data,ea_data,add);
case 0x88: return EAConvectionAssemble1D<8,8>(ne,B,G,pa_data,ea_data,add);
case 0x99: return EAConvectionAssemble1D<9,9>(ne,B,G,pa_data,ea_data,add);
default: return EAConvectionAssemble1D(ne,B,G,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x22: return EAConvectionAssemble1D<2,2>(ne,B,G,pa_data,ea_data);
case 0x33: return EAConvectionAssemble1D<3,3>(ne,B,G,pa_data,ea_data);
case 0x44: return EAConvectionAssemble1D<4,4>(ne,B,G,pa_data,ea_data);
case 0x55: return EAConvectionAssemble1D<5,5>(ne,B,G,pa_data,ea_data);
case 0x66: return EAConvectionAssemble1D<6,6>(ne,B,G,pa_data,ea_data);
case 0x77: return EAConvectionAssemble1D<7,7>(ne,B,G,pa_data,ea_data);
case 0x88: return EAConvectionAssemble1D<8,8>(ne,B,G,pa_data,ea_data);
case 0x99: return EAConvectionAssemble1D<9,9>(ne,B,G,pa_data,ea_data);
default: return EAConvectionAssemble1D(ne,B,G,pa_data,ea_data,dofs1D,quad1D);
}
}
else if (dim == 2)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EAConvectionAssemble2D<2,2>(ne,B,G,pa_data,ea_data,add);
case 0x33: return EAConvectionAssemble2D<3,3>(ne,B,G,pa_data,ea_data,add);
case 0x44: return EAConvectionAssemble2D<4,4>(ne,B,G,pa_data,ea_data,add);
case 0x55: return EAConvectionAssemble2D<5,5>(ne,B,G,pa_data,ea_data,add);
case 0x66: return EAConvectionAssemble2D<6,6>(ne,B,G,pa_data,ea_data,add);
case 0x77: return EAConvectionAssemble2D<7,7>(ne,B,G,pa_data,ea_data,add);
case 0x88: return EAConvectionAssemble2D<8,8>(ne,B,G,pa_data,ea_data,add);
case 0x99: return EAConvectionAssemble2D<9,9>(ne,B,G,pa_data,ea_data,add);
default: return EAConvectionAssemble2D(ne,B,G,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x22: return EAConvectionAssemble2D<2,2>(ne,B,G,pa_data,ea_data);
case 0x33: return EAConvectionAssemble2D<3,3>(ne,B,G,pa_data,ea_data);
case 0x44: return EAConvectionAssemble2D<4,4>(ne,B,G,pa_data,ea_data);
case 0x55: return EAConvectionAssemble2D<5,5>(ne,B,G,pa_data,ea_data);
case 0x66: return EAConvectionAssemble2D<6,6>(ne,B,G,pa_data,ea_data);
case 0x77: return EAConvectionAssemble2D<7,7>(ne,B,G,pa_data,ea_data);
case 0x88: return EAConvectionAssemble2D<8,8>(ne,B,G,pa_data,ea_data);
case 0x99: return EAConvectionAssemble2D<9,9>(ne,B,G,pa_data,ea_data);
default: return EAConvectionAssemble2D(ne,B,G,pa_data,ea_data,dofs1D,quad1D);
}
}
else if (dim == 3)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x23: return EAConvectionAssemble3D<2,3>(ne,B,G,pa_data,ea_data,add);
case 0x34: return EAConvectionAssemble3D<3,4>(ne,B,G,pa_data,ea_data,add);
case 0x45: return EAConvectionAssemble3D<4,5>(ne,B,G,pa_data,ea_data,add);
case 0x56: return EAConvectionAssemble3D<5,6>(ne,B,G,pa_data,ea_data,add);
case 0x67: return EAConvectionAssemble3D<6,7>(ne,B,G,pa_data,ea_data,add);
case 0x78: return EAConvectionAssemble3D<7,8>(ne,B,G,pa_data,ea_data,add);
case 0x89: return EAConvectionAssemble3D<8,9>(ne,B,G,pa_data,ea_data,add);
default: return EAConvectionAssemble3D(ne,B,G,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x23: return EAConvectionAssemble3D<2,3>(ne,B,G,pa_data,ea_data);
case 0x34: return EAConvectionAssemble3D<3,4>(ne,B,G,pa_data,ea_data);
case 0x45: return EAConvectionAssemble3D<4,5>(ne,B,G,pa_data,ea_data);
case 0x56: return EAConvectionAssemble3D<5,6>(ne,B,G,pa_data,ea_data);
case 0x67: return EAConvectionAssemble3D<6,7>(ne,B,G,pa_data,ea_data);
case 0x78: return EAConvectionAssemble3D<7,8>(ne,B,G,pa_data,ea_data);
case 0x89: return EAConvectionAssemble3D<8,9>(ne,B,G,pa_data,ea_data);
default: return EAConvectionAssemble3D(ne,B,G,pa_data,ea_data,dofs1D,quad1D);
}
}
MFEM_ABORT("Unknown kernel.");
-14
View File
@@ -788,20 +788,6 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
vel = cQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient* cQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = cQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
vel.SetSize(dim * nq * ne);
+55 -114
View File
@@ -20,8 +20,7 @@ static void EADGTraceAssemble1DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add)
Vector &eadata_ext)
{
auto D = Reshape(padata.Read(), 2, 2, NF);
auto A_int = Reshape(eadata_int.ReadWrite(), 2, NF);
@@ -33,41 +32,23 @@ static void EADGTraceAssemble1DInt(const int NF,
val_ext10 = D(1, 0, f);
val_ext01 = D(0, 1, f);
val_int1 = D(1, 1, f);
if (add)
{
A_int(0, f) += val_int0;
A_int(1, f) += val_int1;
A_ext(0, f) += val_ext01;
A_ext(1, f) += val_ext10;
}
else
{
A_int(0, f) = val_int0;
A_int(1, f) = val_int1;
A_ext(0, f) = val_ext01;
A_ext(1, f) = val_ext10;
}
A_int(0, f) += val_int0;
A_int(1, f) += val_int1;
A_ext(0, f) += val_ext01;
A_ext(1, f) += val_ext10;
});
}
static void EADGTraceAssemble1DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add)
Vector &eadata_bdr)
{
auto D = Reshape(padata.Read(), 2, 2, NF);
auto A_bdr = Reshape(eadata_bdr.ReadWrite(), NF);
MFEM_FORALL(f, NF,
{
if (add)
{
A_bdr(f) += D(0, 0, f);
}
else
{
A_bdr(f) = D(0, 0, f);
}
A_bdr(f) += D(0, 0, f);
});
}
@@ -77,7 +58,6 @@ static void EADGTraceAssemble2DInt(const int NF,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -108,20 +88,10 @@ static void EADGTraceAssemble2DInt(const int NF,
val_ext10 += B(k1,i1) * B(k1,j1) * D(k1, 1, 0, f);
val_int1 += B(k1,i1) * B(k1,j1) * D(k1, 1, 1, f);
}
if (add)
{
A_int(i1, j1, 0, f) += val_int0;
A_int(i1, j1, 1, f) += val_int1;
A_ext(i1, j1, 0, f) += val_ext01;
A_ext(i1, j1, 1, f) += val_ext10;
}
else
{
A_int(i1, j1, 0, f) = val_int0;
A_int(i1, j1, 1, f) = val_int1;
A_ext(i1, j1, 0, f) = val_ext01;
A_ext(i1, j1, 1, f) = val_ext10;
}
A_int(i1, j1, 0, f) += val_int0;
A_int(i1, j1, 1, f) += val_int1;
A_ext(i1, j1, 0, f) += val_ext01;
A_ext(i1, j1, 1, f) += val_ext10;
}
}
});
@@ -132,7 +102,6 @@ static void EADGTraceAssemble2DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -156,14 +125,7 @@ static void EADGTraceAssemble2DBdr(const int NF,
{
val_bdr += B(k1,i1) * B(k1,j1) * D(k1, 0, 0, f);
}
if (add)
{
A_bdr(i1, j1, f) += val_bdr;
}
else
{
A_bdr(i1, j1, f) = val_bdr;
}
A_bdr(i1, j1, f) += val_bdr;
}
}
});
@@ -175,7 +137,6 @@ static void EADGTraceAssemble3DInt(const int NF,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -246,20 +207,10 @@ static void EADGTraceAssemble3DInt(const int NF,
* s_D[k1][k2][1][0];
}
}
if (add)
{
A_int(i1, i2, j1, j2, 0, f) += val_int0;
A_int(i1, i2, j1, j2, 1, f) += val_int1;
A_ext(i1, i2, j1, j2, 0, f) += val_ext01;
A_ext(i1, i2, j1, j2, 1, f) += val_ext10;
}
else
{
A_int(i1, i2, j1, j2, 0, f) = val_int0;
A_int(i1, i2, j1, j2, 1, f) = val_int1;
A_ext(i1, i2, j1, j2, 0, f) = val_ext01;
A_ext(i1, i2, j1, j2, 1, f) = val_ext10;
}
A_int(i1, i2, j1, j2, 0, f) += val_int0;
A_int(i1, i2, j1, j2, 1, f) += val_int1;
A_ext(i1, i2, j1, j2, 0, f) += val_ext01;
A_ext(i1, i2, j1, j2, 1, f) += val_ext10;
}
}
}
@@ -272,7 +223,6 @@ static void EADGTraceAssemble3DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -330,14 +280,7 @@ static void EADGTraceAssemble3DBdr(const int NF,
* s_D[k1][k2][0][0];
}
}
if (add)
{
A_bdr(i1, i2, j1, j2, f) += val_bdr;
}
else
{
A_bdr(i1, i2, j1, j2, f) = val_bdr;
}
A_bdr(i1, i2, j1, j2, f) += val_bdr;
}
}
}
@@ -347,8 +290,7 @@ static void EADGTraceAssemble3DBdr(const int NF,
void DGTraceIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
Vector &ea_data_int,
Vector &ea_data_ext,
const bool add)
Vector &ea_data_ext)
{
SetupPA(fes, FaceType::Interior);
nf = fes.GetNFbyType(FaceType::Interior);
@@ -356,7 +298,7 @@ void DGTraceIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
const Array<double> &B = maps->B;
if (dim == 1)
{
return EADGTraceAssemble1DInt(nf,B,pa_data,ea_data_int,ea_data_ext,add);
return EADGTraceAssemble1DInt(nf,B,pa_data,ea_data_int,ea_data_ext);
}
else if (dim == 2)
{
@@ -364,31 +306,31 @@ void DGTraceIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
{
case 0x22:
return EADGTraceAssemble2DInt<2,2>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x33:
return EADGTraceAssemble2DInt<3,3>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x44:
return EADGTraceAssemble2DInt<4,4>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x55:
return EADGTraceAssemble2DInt<5,5>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x66:
return EADGTraceAssemble2DInt<6,6>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x77:
return EADGTraceAssemble2DInt<7,7>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x88:
return EADGTraceAssemble2DInt<8,8>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x99:
return EADGTraceAssemble2DInt<9,9>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
default:
return EADGTraceAssemble2DInt(nf,B,pa_data,ea_data_int,
ea_data_ext,add,dofs1D,quad1D);
ea_data_ext,dofs1D,quad1D);
}
}
else if (dim == 3)
@@ -397,36 +339,35 @@ void DGTraceIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
{
case 0x23:
return EADGTraceAssemble3DInt<2,3>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x34:
return EADGTraceAssemble3DInt<3,4>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x45:
return EADGTraceAssemble3DInt<4,5>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x56:
return EADGTraceAssemble3DInt<5,6>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x67:
return EADGTraceAssemble3DInt<6,7>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x78:
return EADGTraceAssemble3DInt<7,8>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
case 0x89:
return EADGTraceAssemble3DInt<8,9>(nf,B,pa_data,ea_data_int,
ea_data_ext,add);
ea_data_ext);
default:
return EADGTraceAssemble3DInt(nf,B,pa_data,ea_data_int,
ea_data_ext,add,dofs1D,quad1D);
ea_data_ext,dofs1D,quad1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
void DGTraceIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace& fes,
Vector &ea_data_bdr,
const bool add)
Vector &ea_data_bdr)
{
SetupPA(fes, FaceType::Boundary);
nf = fes.GetNFbyType(FaceType::Boundary);
@@ -434,37 +375,37 @@ void DGTraceIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace& fes,
const Array<double> &B = maps->B;
if (dim == 1)
{
return EADGTraceAssemble1DBdr(nf,B,pa_data,ea_data_bdr,add);
return EADGTraceAssemble1DBdr(nf,B,pa_data,ea_data_bdr);
}
else if (dim == 2)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EADGTraceAssemble2DBdr<2,2>(nf,B,pa_data,ea_data_bdr,add);
case 0x33: return EADGTraceAssemble2DBdr<3,3>(nf,B,pa_data,ea_data_bdr,add);
case 0x44: return EADGTraceAssemble2DBdr<4,4>(nf,B,pa_data,ea_data_bdr,add);
case 0x55: return EADGTraceAssemble2DBdr<5,5>(nf,B,pa_data,ea_data_bdr,add);
case 0x66: return EADGTraceAssemble2DBdr<6,6>(nf,B,pa_data,ea_data_bdr,add);
case 0x77: return EADGTraceAssemble2DBdr<7,7>(nf,B,pa_data,ea_data_bdr,add);
case 0x88: return EADGTraceAssemble2DBdr<8,8>(nf,B,pa_data,ea_data_bdr,add);
case 0x99: return EADGTraceAssemble2DBdr<9,9>(nf,B,pa_data,ea_data_bdr,add);
case 0x22: return EADGTraceAssemble2DBdr<2,2>(nf,B,pa_data,ea_data_bdr);
case 0x33: return EADGTraceAssemble2DBdr<3,3>(nf,B,pa_data,ea_data_bdr);
case 0x44: return EADGTraceAssemble2DBdr<4,4>(nf,B,pa_data,ea_data_bdr);
case 0x55: return EADGTraceAssemble2DBdr<5,5>(nf,B,pa_data,ea_data_bdr);
case 0x66: return EADGTraceAssemble2DBdr<6,6>(nf,B,pa_data,ea_data_bdr);
case 0x77: return EADGTraceAssemble2DBdr<7,7>(nf,B,pa_data,ea_data_bdr);
case 0x88: return EADGTraceAssemble2DBdr<8,8>(nf,B,pa_data,ea_data_bdr);
case 0x99: return EADGTraceAssemble2DBdr<9,9>(nf,B,pa_data,ea_data_bdr);
default:
return EADGTraceAssemble2DBdr(nf,B,pa_data,ea_data_bdr,add,dofs1D,quad1D);
return EADGTraceAssemble2DBdr(nf,B,pa_data,ea_data_bdr,dofs1D,quad1D);
}
}
else if (dim == 3)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x23: return EADGTraceAssemble3DBdr<2,3>(nf,B,pa_data,ea_data_bdr,add);
case 0x34: return EADGTraceAssemble3DBdr<3,4>(nf,B,pa_data,ea_data_bdr,add);
case 0x45: return EADGTraceAssemble3DBdr<4,5>(nf,B,pa_data,ea_data_bdr,add);
case 0x56: return EADGTraceAssemble3DBdr<5,6>(nf,B,pa_data,ea_data_bdr,add);
case 0x67: return EADGTraceAssemble3DBdr<6,7>(nf,B,pa_data,ea_data_bdr,add);
case 0x78: return EADGTraceAssemble3DBdr<7,8>(nf,B,pa_data,ea_data_bdr,add);
case 0x89: return EADGTraceAssemble3DBdr<8,9>(nf,B,pa_data,ea_data_bdr,add);
case 0x23: return EADGTraceAssemble3DBdr<2,3>(nf,B,pa_data,ea_data_bdr);
case 0x34: return EADGTraceAssemble3DBdr<3,4>(nf,B,pa_data,ea_data_bdr);
case 0x45: return EADGTraceAssemble3DBdr<4,5>(nf,B,pa_data,ea_data_bdr);
case 0x56: return EADGTraceAssemble3DBdr<5,6>(nf,B,pa_data,ea_data_bdr);
case 0x67: return EADGTraceAssemble3DBdr<6,7>(nf,B,pa_data,ea_data_bdr);
case 0x78: return EADGTraceAssemble3DBdr<7,8>(nf,B,pa_data,ea_data_bdr);
case 0x89: return EADGTraceAssemble3DBdr<8,9>(nf,B,pa_data,ea_data_bdr);
default:
return EADGTraceAssemble3DBdr(nf,B,pa_data,ea_data_bdr,add,dofs1D,quad1D);
return EADGTraceAssemble3DBdr(nf,B,pa_data,ea_data_bdr,dofs1D,quad1D);
}
}
MFEM_ABORT("Unknown kernel.");
-27
View File
@@ -167,19 +167,6 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
r.SetSize(1);
r(0) = c_rho->constant;
}
else if (QuadratureFunctionCoefficient* c_rho =
dynamic_cast<QuadratureFunctionCoefficient*>(rho))
{
const QuadratureFunction &qFun = c_rho->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == nq * nf,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
r.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
r.SetSize(nq * nf);
@@ -213,20 +200,6 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
{
vel = c_u->GetVec();
}
else if (VectorQuadratureFunctionCoefficient* c_u =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(u))
{
// Assumed to be in lexicographical ordering
const QuadratureFunction &qFun = c_u->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == dim * nq * nf,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
vel.SetSize(dim * nq * nf);
+34 -62
View File
@@ -22,7 +22,6 @@ static void EADiffusionAssemble1D(const int NE,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -32,7 +31,7 @@ static void EADiffusionAssemble1D(const int NE,
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto G = Reshape(g.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, NE);
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
auto A = Reshape(eadata.Write(), D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -54,14 +53,7 @@ static void EADiffusionAssemble1D(const int NE,
{
val += r_Gj[k1] * D(k1, e) * r_Gi[k1];
}
if (add)
{
A(i1, j1, e) += val;
}
else
{
A(i1, j1, e) = val;
}
A(i1, j1, e) = val;
}
}
});
@@ -73,7 +65,6 @@ static void EADiffusionAssemble2D(const int NE,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -84,7 +75,7 @@ static void EADiffusionAssemble2D(const int NE,
auto B = Reshape(b.Read(), Q1D, D1D);
auto G = Reshape(g.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, Q1D, 3, NE);
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -129,14 +120,7 @@ static void EADiffusionAssemble2D(const int NE,
+ gbi * D11 * gbj;
}
}
if (add)
{
A(i1, i2, j1, j2, e) += val;
}
else
{
A(i1, i2, j1, j2, e) = val;
}
A(i1, i2, j1, j2, e) = val;
}
}
}
@@ -146,11 +130,10 @@ static void EADiffusionAssemble2D(const int NE,
template<int T_D1D = 0, int T_Q1D = 0>
static void EADiffusionAssemble3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &b,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -161,7 +144,7 @@ static void EADiffusionAssemble3D(const int NE,
auto B = Reshape(b.Read(), Q1D, D1D);
auto G = Reshape(g.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 6, NE);
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
auto A = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -225,14 +208,7 @@ static void EADiffusionAssemble3D(const int NE,
}
}
}
if (add)
{
A(i1, i2, i3, j1, j2, j3, e) += val;
}
else
{
A(i1, i2, i3, j1, j2, j3, e) = val;
}
A(i1, i2, i3, j1, j2, j3, e) = val;
}
}
}
@@ -243,8 +219,7 @@ static void EADiffusionAssemble3D(const int NE,
}
void DiffusionIntegrator::AssembleEA(const FiniteElementSpace &fes,
Vector &ea_data,
const bool add)
Vector &ea_data)
{
AssemblePA(fes);
const int ne = fes.GetMesh()->GetNE();
@@ -254,47 +229,44 @@ void DiffusionIntegrator::AssembleEA(const FiniteElementSpace &fes,
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EADiffusionAssemble1D<2,2>(ne,B,G,pa_data,ea_data,add);
case 0x33: return EADiffusionAssemble1D<3,3>(ne,B,G,pa_data,ea_data,add);
case 0x44: return EADiffusionAssemble1D<4,4>(ne,B,G,pa_data,ea_data,add);
case 0x55: return EADiffusionAssemble1D<5,5>(ne,B,G,pa_data,ea_data,add);
case 0x66: return EADiffusionAssemble1D<6,6>(ne,B,G,pa_data,ea_data,add);
case 0x77: return EADiffusionAssemble1D<7,7>(ne,B,G,pa_data,ea_data,add);
case 0x88: return EADiffusionAssemble1D<8,8>(ne,B,G,pa_data,ea_data,add);
case 0x99: return EADiffusionAssemble1D<9,9>(ne,B,G,pa_data,ea_data,add);
default: return EADiffusionAssemble1D(ne,B,G,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x22: return EADiffusionAssemble1D<2,2>(ne,B,G,pa_data,ea_data);
case 0x33: return EADiffusionAssemble1D<3,3>(ne,B,G,pa_data,ea_data);
case 0x44: return EADiffusionAssemble1D<4,4>(ne,B,G,pa_data,ea_data);
case 0x55: return EADiffusionAssemble1D<5,5>(ne,B,G,pa_data,ea_data);
case 0x66: return EADiffusionAssemble1D<6,6>(ne,B,G,pa_data,ea_data);
case 0x77: return EADiffusionAssemble1D<7,7>(ne,B,G,pa_data,ea_data);
case 0x88: return EADiffusionAssemble1D<8,8>(ne,B,G,pa_data,ea_data);
case 0x99: return EADiffusionAssemble1D<9,9>(ne,B,G,pa_data,ea_data);
default: return EADiffusionAssemble1D(ne,B,G,pa_data,ea_data,dofs1D,quad1D);
}
}
else if (dim == 2)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EADiffusionAssemble2D<2,2>(ne,B,G,pa_data,ea_data,add);
case 0x33: return EADiffusionAssemble2D<3,3>(ne,B,G,pa_data,ea_data,add);
case 0x44: return EADiffusionAssemble2D<4,4>(ne,B,G,pa_data,ea_data,add);
case 0x55: return EADiffusionAssemble2D<5,5>(ne,B,G,pa_data,ea_data,add);
case 0x66: return EADiffusionAssemble2D<6,6>(ne,B,G,pa_data,ea_data,add);
case 0x77: return EADiffusionAssemble2D<7,7>(ne,B,G,pa_data,ea_data,add);
case 0x88: return EADiffusionAssemble2D<8,8>(ne,B,G,pa_data,ea_data,add);
case 0x99: return EADiffusionAssemble2D<9,9>(ne,B,G,pa_data,ea_data,add);
default: return EADiffusionAssemble2D(ne,B,G,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x22: return EADiffusionAssemble2D<2,2>(ne,B,G,pa_data,ea_data);
case 0x33: return EADiffusionAssemble2D<3,3>(ne,B,G,pa_data,ea_data);
case 0x44: return EADiffusionAssemble2D<4,4>(ne,B,G,pa_data,ea_data);
case 0x55: return EADiffusionAssemble2D<5,5>(ne,B,G,pa_data,ea_data);
case 0x66: return EADiffusionAssemble2D<6,6>(ne,B,G,pa_data,ea_data);
case 0x77: return EADiffusionAssemble2D<7,7>(ne,B,G,pa_data,ea_data);
case 0x88: return EADiffusionAssemble2D<8,8>(ne,B,G,pa_data,ea_data);
case 0x99: return EADiffusionAssemble2D<9,9>(ne,B,G,pa_data,ea_data);
default: return EADiffusionAssemble2D(ne,B,G,pa_data,ea_data,dofs1D,quad1D);
}
}
else if (dim == 3)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x23: return EADiffusionAssemble3D<2,3>(ne,B,G,pa_data,ea_data,add);
case 0x34: return EADiffusionAssemble3D<3,4>(ne,B,G,pa_data,ea_data,add);
case 0x45: return EADiffusionAssemble3D<4,5>(ne,B,G,pa_data,ea_data,add);
case 0x56: return EADiffusionAssemble3D<5,6>(ne,B,G,pa_data,ea_data,add);
case 0x67: return EADiffusionAssemble3D<6,7>(ne,B,G,pa_data,ea_data,add);
case 0x78: return EADiffusionAssemble3D<7,8>(ne,B,G,pa_data,ea_data,add);
case 0x89: return EADiffusionAssemble3D<8,9>(ne,B,G,pa_data,ea_data,add);
default: return EADiffusionAssemble3D(ne,B,G,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x23: return EADiffusionAssemble3D<2,3>(ne,B,G,pa_data,ea_data);
case 0x34: return EADiffusionAssemble3D<3,4>(ne,B,G,pa_data,ea_data);
case 0x45: return EADiffusionAssemble3D<4,5>(ne,B,G,pa_data,ea_data);
case 0x56: return EADiffusionAssemble3D<5,6>(ne,B,G,pa_data,ea_data);
case 0x67: return EADiffusionAssemble3D<6,7>(ne,B,G,pa_data,ea_data);
case 0x78: return EADiffusionAssemble3D<7,8>(ne,B,G,pa_data,ea_data);
case 0x89: return EADiffusionAssemble3D<8,9>(ne,B,G,pa_data,ea_data);
default: return EADiffusionAssemble3D(ne,B,G,pa_data,ea_data,dofs1D,quad1D);
}
}
MFEM_ABORT("Unknown kernel.");
+255 -343
View File
@@ -96,28 +96,26 @@ void PADiffusionSetup2D<2>(const int Q1D,
const Vector &c,
Vector &d)
{
const int NQ = Q1D*Q1D;
const bool const_c = c.Size() == 1;
const auto W = Reshape(w.Read(), Q1D,Q1D);
const auto J = Reshape(j.Read(), Q1D,Q1D,2,2,NE);
const auto C = const_c ? Reshape(c.Read(), 1,1,1) :
Reshape(c.Read(), Q1D,Q1D,NE);
auto D = Reshape(d.Write(), Q1D,Q1D, 3, NE);
MFEM_FORALL_2D(e, NE, Q1D,Q1D,1,
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, 2, 2, NE);
auto C = const_c ? Reshape(c.Read(), 1, 1) : Reshape(c.Read(), NQ, NE);
auto D = Reshape(d.Write(), NQ, 3, NE);
MFEM_FORALL(e, NE,
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
for (int q = 0; q < NQ; ++q)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
const double J11 = J(qx,qy,0,0,e);
const double J21 = J(qx,qy,1,0,e);
const double J12 = J(qx,qy,0,1,e);
const double J22 = J(qx,qy,1,1,e);
const double coeff = const_c ? C(0,0,0) : C(qx,qy,e);
const double c_detJ = W(qx,qy) * coeff / ((J11*J22)-(J21*J12));
D(qx,qy,0,e) = c_detJ * (J12*J12 + J22*J22); // 1,1
D(qx,qy,1,e) = -c_detJ * (J12*J11 + J22*J21); // 1,2
D(qx,qy,2,e) = c_detJ * (J11*J11 + J21*J21); // 2,2
}
const double J11 = J(q,0,0,e);
const double J21 = J(q,1,0,e);
const double J12 = J(q,0,1,e);
const double J22 = J(q,1,1,e);
const double coeff = const_c ? C(0,0) : C(q,e);
const double c_detJ = W[q] * coeff / ((J11*J22)-(J21*J12));
D(q,0,e) = c_detJ * (J12*J12 + J22*J22); // 1,1
D(q,1,e) = -c_detJ * (J12*J11 + J22*J21); // 1,2
D(q,2,e) = c_detJ * (J11*J11 + J21*J21); // 2,2
}
});
}
@@ -133,35 +131,33 @@ void PADiffusionSetup2D<3>(const int Q1D,
{
constexpr int DIM = 2;
constexpr int SDIM = 3;
const int NQ = Q1D*Q1D;
const bool const_c = c.Size() == 1;
const auto W = Reshape(w.Read(), Q1D,Q1D);
const auto J = Reshape(j.Read(), Q1D,Q1D,SDIM,DIM,NE);
const auto C = const_c ? Reshape(c.Read(), 1,1,1) :
Reshape(c.Read(), Q1D,Q1D,NE);
auto D = Reshape(d.Write(), Q1D,Q1D, 3, NE);
MFEM_FORALL_2D(e, NE, Q1D,Q1D,1,
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, SDIM, DIM, NE);
auto C = const_c ? Reshape(c.Read(), 1, 1) : Reshape(c.Read(), NQ, NE);
auto D = Reshape(d.Write(), NQ, 3, NE);
MFEM_FORALL(e, NE,
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
for (int q = 0; q < NQ; ++q)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
const double wq = W(qx,qy);
const double J11 = J(qx,qy,0,0,e);
const double J21 = J(qx,qy,1,0,e);
const double J31 = J(qx,qy,2,0,e);
const double J12 = J(qx,qy,0,1,e);
const double J22 = J(qx,qy,1,1,e);
const double J32 = J(qx,qy,2,1,e);
const double E = J11*J11 + J21*J21 + J31*J31;
const double G = J12*J12 + J22*J22 + J32*J32;
const double F = J11*J12 + J21*J22 + J31*J32;
const double iw = 1.0 / sqrt(E*G - F*F);
const double coeff = const_c ? C(0,0,0) : C(qx,qy,e);
const double alpha = wq * coeff * iw;
D(qx,qy,0,e) = alpha * G; // 1,1
D(qx,qy,1,e) = -alpha * F; // 1,2
D(qx,qy,2,e) = alpha * E; // 2,2
}
const double wq = W[q];
const double J11 = J(q,0,0,e);
const double J21 = J(q,1,0,e);
const double J31 = J(q,2,0,e);
const double J12 = J(q,0,1,e);
const double J22 = J(q,1,1,e);
const double J32 = J(q,2,1,e);
const double E = J11*J11 + J21*J21 + J31*J31;
const double G = J12*J12 + J22*J22 + J32*J32;
const double F = J11*J12 + J21*J22 + J31*J32;
const double iw = 1.0 / sqrt(E*G - F*F);
const double coeff = const_c ? C(0,0) : C(q,e);
const double alpha = wq * coeff * iw;
D(q,0,e) = alpha * G; // 1,1
D(q,1,e) = -alpha * F; // 1,2
D(q,2,e) = alpha * E; // 2,2
}
});
}
@@ -174,54 +170,47 @@ static void PADiffusionSetup3D(const int Q1D,
const Vector &c,
Vector &d)
{
const int NQ = Q1D*Q1D*Q1D;
const bool const_c = c.Size() == 1;
const auto W = Reshape(w.Read(), Q1D,Q1D,Q1D);
const auto J = Reshape(j.Read(), Q1D,Q1D,Q1D,3,3,NE);
const auto C = const_c ? Reshape(c.Read(), 1,1,1,1) :
Reshape(c.Read(), Q1D,Q1D,Q1D,NE);
auto D = Reshape(d.Write(), Q1D,Q1D,Q1D, 6, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
auto C = const_c ? Reshape(c.Read(), 1, 1) : Reshape(c.Read(), NQ, NE);
auto D = Reshape(d.Write(), NQ, 6, NE);
MFEM_FORALL(eq, NE*NQ,
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
const double J11 = J(qx,qy,qz,0,0,e);
const double J21 = J(qx,qy,qz,1,0,e);
const double J31 = J(qx,qy,qz,2,0,e);
const double J12 = J(qx,qy,qz,0,1,e);
const double J22 = J(qx,qy,qz,1,1,e);
const double J32 = J(qx,qy,qz,2,1,e);
const double J13 = J(qx,qy,qz,0,2,e);
const double J23 = J(qx,qy,qz,1,2,e);
const double J33 = J(qx,qy,qz,2,2,e);
const double detJ = J11 * (J22 * J33 - J32 * J23) -
/* */ J21 * (J12 * J33 - J32 * J13) +
/* */ J31 * (J12 * J23 - J22 * J13);
const double coeff = const_c ? C(0,0,0,0) : C(qx,qy,qz,e);
const double c_detJ = W(qx,qy,qz) * coeff / detJ;
// adj(J)
const double A11 = (J22 * J33) - (J23 * J32);
const double A12 = (J32 * J13) - (J12 * J33);
const double A13 = (J12 * J23) - (J22 * J13);
const double A21 = (J31 * J23) - (J21 * J33);
const double A22 = (J11 * J33) - (J13 * J31);
const double A23 = (J21 * J13) - (J11 * J23);
const double A31 = (J21 * J32) - (J31 * J22);
const double A32 = (J31 * J12) - (J11 * J32);
const double A33 = (J11 * J22) - (J12 * J21);
// detJ J^{-1} J^{-T} = (1/detJ) adj(J) adj(J)^T
D(qx,qy,qz,0,e) = c_detJ * (A11*A11 + A12*A12 + A13*A13); // 1,1
D(qx,qy,qz,1,e) = c_detJ * (A11*A21 + A12*A22 + A13*A23); // 2,1
D(qx,qy,qz,2,e) = c_detJ * (A11*A31 + A12*A32 + A13*A33); // 3,1
D(qx,qy,qz,3,e) = c_detJ * (A21*A21 + A22*A22 + A23*A23); // 2,2
D(qx,qy,qz,4,e) = c_detJ * (A21*A31 + A22*A32 + A23*A33); // 3,2
D(qx,qy,qz,5,e) = c_detJ * (A31*A31 + A32*A32 + A33*A33); // 3,3
}
}
}
const int e = eq / NQ;
const int q = eq % NQ;
const double J11 = J(q,0,0,e);
const double J21 = J(q,1,0,e);
const double J31 = J(q,2,0,e);
const double J12 = J(q,0,1,e);
const double J22 = J(q,1,1,e);
const double J32 = J(q,2,1,e);
const double J13 = J(q,0,2,e);
const double J23 = J(q,1,2,e);
const double J33 = J(q,2,2,e);
const double detJ = J11 * (J22 * J33 - J32 * J23) -
/* */ J21 * (J12 * J33 - J32 * J13) +
/* */ J31 * (J12 * J23 - J22 * J13);
const double coeff = const_c ? C(0,0) : C(q,e);
const double c_detJ = W[q] * coeff / detJ;
// adj(J)
const double A11 = (J22 * J33) - (J23 * J32);
const double A12 = (J32 * J13) - (J12 * J33);
const double A13 = (J12 * J23) - (J22 * J13);
const double A21 = (J31 * J23) - (J21 * J33);
const double A22 = (J11 * J33) - (J13 * J31);
const double A23 = (J21 * J13) - (J11 * J23);
const double A31 = (J21 * J32) - (J31 * J22);
const double A32 = (J31 * J12) - (J11 * J32);
const double A33 = (J11 * J22) - (J12 * J21);
// detJ J^{-1} J^{-T} = (1/detJ) adj(J) adj(J)^T
D(q,0,e) = c_detJ * (A11*A11 + A12*A12 + A13*A13); // 1,1
D(q,1,e) = c_detJ * (A11*A21 + A12*A22 + A13*A23); // 2,1
D(q,2,e) = c_detJ * (A11*A31 + A12*A32 + A13*A33); // 3,1
D(q,3,e) = c_detJ * (A21*A21 + A22*A22 + A23*A23); // 2,2
D(q,4,e) = c_detJ * (A21*A31 + A22*A32 + A23*A33); // 3,2
D(q,5,e) = c_detJ * (A31*A31 + A32*A32 + A33*A33); // 3,3
});
}
@@ -263,7 +252,8 @@ static void PADiffusionSetup(const int dim,
}
}
void DiffusionIntegrator::SetupPA(const FiniteElementSpace &fes)
void DiffusionIntegrator::SetupPA(const FiniteElementSpace &fes,
const bool force)
{
// Assuming the same element type
fespace = &fes;
@@ -272,7 +262,7 @@ void DiffusionIntegrator::SetupPA(const FiniteElementSpace &fes)
const FiniteElement &el = *fes.GetFE(0);
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el);
#ifdef MFEM_USE_CEED
if (DeviceCanUseCeed())
if (DeviceCanUseCeed() && !force)
{
if (ceedDataPtr) { delete ceedDataPtr; }
CeedData* ptr = new CeedData();
@@ -280,6 +270,8 @@ void DiffusionIntegrator::SetupPA(const FiniteElementSpace &fes)
InitCeedCoeff(Q, ptr);
return CeedPADiffusionAssemble(fes, *ir, *ptr);
}
#else
MFEM_CONTRACT_VAR(force);
#endif
const int dims = el.GetDim();
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
@@ -303,19 +295,6 @@ void DiffusionIntegrator::SetupPA(const FiniteElementSpace &fes)
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient* cQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = cQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
coeff.SetSize(nq * ne);
@@ -756,17 +735,9 @@ static void PADiffusionAssembleDiagonal(const int dim,
void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
{
#ifdef MFEM_USE_CEED
if (DeviceCanUseCeed())
{
CeedAssembleDiagonalPA(ceedDataPtr, diag);
}
else
#endif
{
PADiffusionAssembleDiagonal(dim, dofs1D, quad1D, ne,
maps->B, maps->G, pa_data, diag);
}
if (pa_data.Size()==0) { SetupPA(*fespace, true); }
PADiffusionAssembleDiagonal(dim, dofs1D, quad1D, ne,
maps->B, maps->G, pa_data, diag);
}
@@ -1335,33 +1306,7 @@ static void PADiffusionApply3D(const int NE,
});
}
// Half of B and G are stored in shared to get B, Bt, G and Gt.
// Indices computation for SmemPADiffusionApply3D.
static MFEM_HOST_DEVICE inline int qi(const int q, const int d, const int Q)
{
return (q<=d) ? q : Q-1-q;
}
static MFEM_HOST_DEVICE inline int dj(const int q, const int d, const int D)
{
return (q<=d) ? d : D-1-d;
}
static MFEM_HOST_DEVICE inline int qk(const int q, const int d, const int Q)
{
return (q<=d) ? Q-1-q : q;
}
static MFEM_HOST_DEVICE inline int dl(const int q, const int d, const int D)
{
return (q<=d) ? D-1-d : d;
}
static MFEM_HOST_DEVICE inline double sign(const int q, const int d)
{
return (q<=d) ? -1.0 : 1.0;
}
// Shared memory PA Diffusion Apply 3D kernel
template<int T_D1D = 0, int T_Q1D = 0>
static void SmemPADiffusionApply3D(const int NE,
const Array<double> &b_,
@@ -1374,27 +1319,28 @@ static void SmemPADiffusionApply3D(const int NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int M1D = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= M1D, "");
MFEM_VERIFY(Q1D <= M1Q, "");
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto g = Reshape(g_.Read(), Q1D, D1D);
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, 6, NE);
auto d = Reshape(d_.Read(), Q1D*Q1D*Q1D, 6, NE);
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
MFEM_SHARED double sBG[MQ1*MD1];
double (*B)[MD1] = (double (*)[MD1]) sBG;
double (*G)[MD1] = (double (*)[MD1]) sBG;
double (*Bt)[MQ1] = (double (*)[MQ1]) sBG;
double (*Gt)[MQ1] = (double (*)[MQ1]) sBG;
constexpr int MDQ = MQ1 > MD1 ? MQ1 : MD1;
MFEM_SHARED double sBG[2][MQ1*MD1];
double (*B)[MD1] = (double (*)[MD1]) (sBG+0);
double (*G)[MD1] = (double (*)[MD1]) (sBG+1);
double (*Bt)[MQ1] = (double (*)[MQ1]) (sBG+0);
double (*Gt)[MQ1] = (double (*)[MQ1]) (sBG+1);
MFEM_SHARED double sm0[3][MDQ*MDQ*MDQ];
MFEM_SHARED double sm1[3][MDQ*MDQ*MDQ];
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+2);
@@ -1412,127 +1358,108 @@ static void SmemPADiffusionApply3D(const int NE,
double (*QDD0)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+0);
double (*QDD1)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+1);
double (*QDD2)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+2);
MFEM_FOREACH_THREAD(dy,y,D1D)
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
MFEM_FOREACH_THREAD(dx,x,D1D)
{
X[dz][dy][dx] = x(dx,dy,dz,e);
}
}
MFEM_FOREACH_THREAD(qx,x,Q1D)
}
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
const int i = qi(qx,dy,Q1D);
const int j = dj(qx,dy,D1D);
const int k = qk(qx,dy,Q1D);
const int l = dl(qx,dy,D1D);
B[i][j] = b(qx,dy);
G[k][l] = g(qx,dy) * sign(qx,dy);
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
G[q][d] = g(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
MFEM_FOREACH_THREAD(dy,y,D1D)
{
double u[D1D], v[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++) { u[dz] = v[dz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dx = 0; dx < D1D; ++dx)
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
double u = 0.0;
double v = 0.0;
for (int dx = 0; dx < D1D; ++dx)
{
const double coords = X[dz][dy][dx];
u[dz] += coords * B[i][j];
v[dz] += coords * G[k][l] * s;
u += coords * B[qx][dx];
v += coords * G[qx][dx];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
DDQ0[dz][dy][qx] = u[dz];
DDQ1[dz][dy][qx] = v[dz];
DDQ0[dz][dy][qx] = u;
DDQ1[dz][dy][qx] = v;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
double u[D1D], v[D1D], w[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++) { u[dz] = v[dz] = w[dz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dy = 0; dy < D1D; ++dy)
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
double u = 0.0;
double v = 0.0;
double w = 0.0;
for (int dy = 0; dy < D1D; ++dy)
{
u[dz] += DDQ1[dz][dy][qx] * B[i][j];
v[dz] += DDQ0[dz][dy][qx] * G[k][l] * s;
w[dz] += DDQ0[dz][dy][qx] * B[i][j];
u += DDQ1[dz][dy][qx] * B[qy][dy];
v += DDQ0[dz][dy][qx] * G[qy][dy];
w += DDQ0[dz][dy][qx] * B[qy][dy];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
DQQ0[dz][qy][qx] = u[dz];
DQQ1[dz][qy][qx] = v[dz];
DQQ2[dz][qy][qx] = w[dz];
DQQ0[dz][qy][qx] = u;
DQQ1[dz][qy][qx] = v;
DQQ2[dz][qy][qx] = w;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
double u[Q1D], v[Q1D], w[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++) { u[qz] = v[qz] = w[qz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
double u = 0.0;
double v = 0.0;
double w = 0.0;
for (int dz = 0; dz < D1D; ++dz)
{
const int i = qi(qz,dz,Q1D);
const int j = dj(qz,dz,D1D);
const int k = qk(qz,dz,Q1D);
const int l = dl(qz,dz,D1D);
const double s = sign(qz,dz);
u[qz] += DQQ0[dz][qy][qx] * B[i][j];
v[qz] += DQQ1[dz][qy][qx] * B[i][j];
w[qz] += DQQ2[dz][qy][qx] * G[k][l] * s;
u += DQQ0[dz][qy][qx] * B[qz][dz];
v += DQQ1[dz][qy][qx] * B[qz][dz];
w += DQQ2[dz][qy][qx] * G[qz][dz];
}
QQQ0[qz][qy][qx] = u;
QQQ1[qz][qy][qx] = v;
QQQ2[qz][qy][qx] = w;
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
const double O11 = d(qx,qy,qz,0,e);
const double O12 = d(qx,qy,qz,1,e);
const double O13 = d(qx,qy,qz,2,e);
const double O22 = d(qx,qy,qz,3,e);
const double O23 = d(qx,qy,qz,4,e);
const double O33 = d(qx,qy,qz,5,e);
const double gX = u[qz];
const double gY = v[qz];
const double gZ = w[qz];
const int q = qx + ((qy*Q1D) + (qz*Q1D*Q1D));
const double O11 = d(q,0,e);
const double O12 = d(q,1,e);
const double O13 = d(q,2,e);
const double O22 = d(q,3,e);
const double O23 = d(q,4,e);
const double O33 = d(q,5,e);
const double gX = QQQ0[qz][qy][qx];
const double gY = QQQ1[qz][qy][qx];
const double gZ = QQQ2[qz][qy][qx];
QQQ0[qz][qy][qx] = (O11*gX) + (O12*gY) + (O13*gZ);
QQQ1[qz][qy][qx] = (O12*gX) + (O22*gY) + (O23*gZ);
QQQ2[qz][qy][qx] = (O13*gX) + (O23*gY) + (O33*gZ);
@@ -1540,112 +1467,78 @@ static void SmemPADiffusionApply3D(const int NE,
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(d,y,D1D)
if (tidz == 0)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
MFEM_FOREACH_THREAD(d,y,D1D)
{
const int i = qi(q,d,Q1D);
const int j = dj(q,d,D1D);
const int k = qk(q,d,Q1D);
const int l = dl(q,d,D1D);
Bt[j][i] = b(q,d);
Gt[l][k] = g(q,d) * sign(q,d);
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[d][q] = b(q,d);
Gt[d][q] = g(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
double u[Q1D], v[Q1D], w[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = v[qz] = w[qz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qx = 0; qx < Q1D; ++qx)
MFEM_FOREACH_THREAD(dx,x,D1D)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
MFEM_UNROLL(MQ1)
double u = 0.0;
double v = 0.0;
double w = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
u += QQQ0[qz][qy][qx] * Gt[dx][qx];
v += QQQ1[qz][qy][qx] * Bt[dx][qx];
w += QQQ2[qz][qy][qx] * Bt[dx][qx];
}
QQD0[qz][qy][dx] = u;
QQD1[qz][qy][dx] = v;
QQD2[qz][qy][dx] = w;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0;
double v = 0.0;
double w = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
u += QQD0[qz][qy][dx] * Bt[dy][qy];
v += QQD1[qz][qy][dx] * Gt[dy][qy];
w += QQD2[qz][qy][dx] * Bt[dy][qy];
}
QDD0[qz][dy][dx] = u;
QDD1[qz][dy][dx] = v;
QDD2[qz][dy][dx] = w;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0;
double v = 0.0;
double w = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ0[qz][qy][qx] * Gt[l][k] * s;
v[qz] += QQQ1[qz][qy][qx] * Bt[j][i];
w[qz] += QQQ2[qz][qy][qx] * Bt[j][i];
u += QDD0[qz][dy][dx] * Bt[dz][qz];
v += QDD1[qz][dy][dx] * Bt[dz][qz];
w += QDD2[qz][dy][dx] * Gt[dz][qz];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QQD0[qz][qy][dx] = u[qz];
QQD1[qz][qy][dx] = v[qz];
QQD2[qz][qy][dx] = w[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D], v[Q1D], w[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = v[qz] = w[qz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qy = 0; qy < Q1D; ++qy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD0[qz][qy][dx] * Bt[j][i];
v[qz] += QQD1[qz][qy][dx] * Gt[l][k] * s;
w[qz] += QQD2[qz][qy][dx] * Bt[j][i];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QDD0[qz][dy][dx] = u[qz];
QDD1[qz][dy][dx] = v[qz];
QDD2[qz][dy][dx] = w[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[D1D], v[D1D], w[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = v[dz] = w[dz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
const int i = qi(qz,dz,Q1D);
const int j = dj(qz,dz,D1D);
const int k = qk(qz,dz,Q1D);
const int l = dl(qz,dz,D1D);
const double s = sign(qz,dz);
u[dz] += QDD0[qz][dy][dx] * Bt[j][i];
v[dz] += QDD1[qz][dy][dx] * Bt[j][i];
w[dz] += QDD2[qz][dy][dx] * Gt[l][k] * s;
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
y(dx,dy,dz,e) += (u[dz] + v[dz] + w[dz]);
y(dx,dy,dz,e) += (u + v + w);
}
}
}
@@ -1680,11 +1573,9 @@ static void PADiffusionApply(const int dim,
MFEM_ABORT("OCCA PADiffusionApply unknown kernel!");
}
#endif // MFEM_USE_OCCA
const int ID = (D1D << 4) | Q1D;
if (dim == 2)
{
switch (ID)
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPADiffusionApply2D<2,2,16>(NE,B,G,D,X,Y);
case 0x33: return SmemPADiffusionApply2D<3,3,16>(NE,B,G,D,X,Y);
@@ -1697,10 +1588,9 @@ static void PADiffusionApply(const int dim,
default: return PADiffusionApply2D(NE,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
}
}
if (dim == 3)
else if (dim == 3)
{
switch (ID)
switch ((D1D << 4 ) | Q1D)
{
case 0x23: return SmemPADiffusionApply3D<2,3>(NE,B,G,D,X,Y);
case 0x34: return SmemPADiffusionApply3D<3,4>(NE,B,G,D,X,Y);
@@ -1723,7 +1613,29 @@ void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
#ifdef MFEM_USE_CEED
if (DeviceCanUseCeed())
{
CeedAddMultPA(ceedDataPtr, x, y);
const CeedScalar *x_ptr;
CeedScalar *y_ptr;
CeedMemType mem;
CeedGetPreferredMemType(internal::ceed, &mem);
if ( Device::Allows(Backend::CUDA) && mem==CEED_MEM_DEVICE )
{
x_ptr = x.Read();
y_ptr = y.ReadWrite();
}
else
{
x_ptr = x.HostRead();
y_ptr = y.HostReadWrite();
mem = CEED_MEM_HOST;
}
CeedVectorSetArray(ceedDataPtr->u, mem, CEED_USE_POINTER,
const_cast<CeedScalar*>(x_ptr));
CeedVectorSetArray(ceedDataPtr->v, mem, CEED_USE_POINTER, y_ptr);
CeedOperatorApplyAdd(ceedDataPtr->oper, ceedDataPtr->u, ceedDataPtr->v,
CEED_REQUEST_IMMEDIATE);
CeedVectorSyncArray(ceedDataPtr->v, mem);
}
else
#endif
+267 -3307
View File
File diff suppressed because it is too large Load Diff
+6 -11
View File
@@ -23,6 +23,11 @@ using namespace std;
namespace mfem
{
// Local maximum size of dofs and quads in 1D
constexpr int HDIV_MAX_D1D = 5;
constexpr int HDIV_MAX_Q1D = 6;
// PA H(div) Mass Assemble 2D kernel
void PAHdivSetup2D(const int Q1D,
const int NE,
@@ -109,8 +114,6 @@ void PAHdivMassApply2D(const int D1D,
Vector &_y)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
auto Bc = Reshape(_Bc.Read(), Q1D, D1D);
@@ -235,7 +238,6 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
Vector &_diag)
{
constexpr static int VDIM = 2;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
auto Bc = Reshape(_Bc.Read(), Q1D, D1D);
@@ -612,8 +614,6 @@ static void PADivDivApply2D(const int D1D,
Vector &_y)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
auto Bot = Reshape(_Bot.Read(), D1D-1, Q1D);
@@ -977,7 +977,6 @@ static void PADivDivAssembleDiagonal2D(const int D1D,
Vector &_diag)
{
constexpr static int VDIM = 2;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
auto Gc = Reshape(_Gc.Read(), Q1D, D1D);
@@ -1401,8 +1400,6 @@ static void PAHdivL2Apply2D(const int D1D,
Vector &_y)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
auto Bo = Reshape(_Bo.Read(), Q1D, D1D-1);
auto Gc = Reshape(_Gc.Read(), Q1D, D1D);
@@ -1669,8 +1666,6 @@ static void PAHdivL2ApplyTranspose2D(const int D1D,
Vector &_y)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
auto L2Bo = Reshape(_L2Bo.Read(), Q1D, L2D1D);
auto Gct = Reshape(_Gct.Read(), D1D, Q1D);
@@ -1729,7 +1724,7 @@ static void PAHdivL2ApplyTranspose2D(const int D1D,
for (int qy = 0; qy < Q1D; ++qy)
{
double aX[MAX_D1D];
double aX[HDIV_MAX_D1D];
int osc = 0;
for (int c = 0; c < VDIM; ++c) // loop over x, y components
+33 -61
View File
@@ -21,7 +21,6 @@ static void EAMassAssemble1D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -31,7 +30,7 @@ static void EAMassAssemble1D(const int NE,
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(basis.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, NE);
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
auto M = Reshape(eadata.Write(), D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -53,14 +52,7 @@ static void EAMassAssemble1D(const int NE,
{
val += r_Bi[k1] * r_Bj[k1] * D(k1, e);
}
if (add)
{
M(i1, j1, e) += val;
}
else
{
M(i1, j1, e) = val;
}
M(i1, j1, e) = val;
}
}
});
@@ -71,7 +63,6 @@ static void EAMassAssemble2D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -81,7 +72,7 @@ static void EAMassAssemble2D(const int NE,
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(basis.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, Q1D, NE);
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
auto M = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -123,14 +114,7 @@ static void EAMassAssemble2D(const int NE,
* s_D[k1][k2];
}
}
if (add)
{
M(i1, i2, j1, j2, e) += val;
}
else
{
M(i1, i2, j1, j2, e) = val;
}
M(i1, i2, j1, j2, e) = val;
}
}
}
@@ -143,7 +127,6 @@ static void EAMassAssemble3D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
@@ -153,7 +136,7 @@ static void EAMassAssemble3D(const int NE,
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(basis.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, NE);
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
auto M = Reshape(eadata.Write(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
{
const int D1D = T_D1D ? T_D1D : d1d;
@@ -206,14 +189,7 @@ static void EAMassAssemble3D(const int NE,
}
}
}
if (add)
{
M(i1, i2, i3, j1, j2, j3, e) += val;
}
else
{
M(i1, i2, i3, j1, j2, j3, e) = val;
}
M(i1, i2, i3, j1, j2, j3, e) = val;
}
}
}
@@ -224,8 +200,7 @@ static void EAMassAssemble3D(const int NE,
}
void MassIntegrator::AssembleEA(const FiniteElementSpace &fes,
Vector &ea_data,
const bool add)
Vector &ea_data)
{
AssemblePA(fes);
const int ne = fes.GetMesh()->GetNE();
@@ -234,47 +209,44 @@ void MassIntegrator::AssembleEA(const FiniteElementSpace &fes,
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EAMassAssemble1D<2,2>(ne,B,pa_data,ea_data,add);
case 0x33: return EAMassAssemble1D<3,3>(ne,B,pa_data,ea_data,add);
case 0x44: return EAMassAssemble1D<4,4>(ne,B,pa_data,ea_data,add);
case 0x55: return EAMassAssemble1D<5,5>(ne,B,pa_data,ea_data,add);
case 0x66: return EAMassAssemble1D<6,6>(ne,B,pa_data,ea_data,add);
case 0x77: return EAMassAssemble1D<7,7>(ne,B,pa_data,ea_data,add);
case 0x88: return EAMassAssemble1D<8,8>(ne,B,pa_data,ea_data,add);
case 0x99: return EAMassAssemble1D<9,9>(ne,B,pa_data,ea_data,add);
default: return EAMassAssemble1D(ne,B,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x22: return EAMassAssemble1D<2,2>(ne,B,pa_data,ea_data);
case 0x33: return EAMassAssemble1D<3,3>(ne,B,pa_data,ea_data);
case 0x44: return EAMassAssemble1D<4,4>(ne,B,pa_data,ea_data);
case 0x55: return EAMassAssemble1D<5,5>(ne,B,pa_data,ea_data);
case 0x66: return EAMassAssemble1D<6,6>(ne,B,pa_data,ea_data);
case 0x77: return EAMassAssemble1D<7,7>(ne,B,pa_data,ea_data);
case 0x88: return EAMassAssemble1D<8,8>(ne,B,pa_data,ea_data);
case 0x99: return EAMassAssemble1D<9,9>(ne,B,pa_data,ea_data);
default: return EAMassAssemble1D(ne,B,pa_data,ea_data,dofs1D,quad1D);
}
}
else if (dim == 2)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x22: return EAMassAssemble2D<2,2>(ne,B,pa_data,ea_data,add);
case 0x33: return EAMassAssemble2D<3,3>(ne,B,pa_data,ea_data,add);
case 0x44: return EAMassAssemble2D<4,4>(ne,B,pa_data,ea_data,add);
case 0x55: return EAMassAssemble2D<5,5>(ne,B,pa_data,ea_data,add);
case 0x66: return EAMassAssemble2D<6,6>(ne,B,pa_data,ea_data,add);
case 0x77: return EAMassAssemble2D<7,7>(ne,B,pa_data,ea_data,add);
case 0x88: return EAMassAssemble2D<8,8>(ne,B,pa_data,ea_data,add);
case 0x99: return EAMassAssemble2D<9,9>(ne,B,pa_data,ea_data,add);
default: return EAMassAssemble2D(ne,B,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x22: return EAMassAssemble2D<2,2>(ne,B,pa_data,ea_data);
case 0x33: return EAMassAssemble2D<3,3>(ne,B,pa_data,ea_data);
case 0x44: return EAMassAssemble2D<4,4>(ne,B,pa_data,ea_data);
case 0x55: return EAMassAssemble2D<5,5>(ne,B,pa_data,ea_data);
case 0x66: return EAMassAssemble2D<6,6>(ne,B,pa_data,ea_data);
case 0x77: return EAMassAssemble2D<7,7>(ne,B,pa_data,ea_data);
case 0x88: return EAMassAssemble2D<8,8>(ne,B,pa_data,ea_data);
case 0x99: return EAMassAssemble2D<9,9>(ne,B,pa_data,ea_data);
default: return EAMassAssemble2D(ne,B,pa_data,ea_data,dofs1D,quad1D);
}
}
else if (dim == 3)
{
switch ((dofs1D << 4 ) | quad1D)
{
case 0x23: return EAMassAssemble3D<2,3>(ne,B,pa_data,ea_data,add);
case 0x34: return EAMassAssemble3D<3,4>(ne,B,pa_data,ea_data,add);
case 0x45: return EAMassAssemble3D<4,5>(ne,B,pa_data,ea_data,add);
case 0x56: return EAMassAssemble3D<5,6>(ne,B,pa_data,ea_data,add);
case 0x67: return EAMassAssemble3D<6,7>(ne,B,pa_data,ea_data,add);
case 0x78: return EAMassAssemble3D<7,8>(ne,B,pa_data,ea_data,add);
case 0x89: return EAMassAssemble3D<8,9>(ne,B,pa_data,ea_data,add);
default: return EAMassAssemble3D(ne,B,pa_data,ea_data,add,
dofs1D,quad1D);
case 0x23: return EAMassAssemble3D<2,3>(ne,B,pa_data,ea_data);
case 0x34: return EAMassAssemble3D<3,4>(ne,B,pa_data,ea_data);
case 0x45: return EAMassAssemble3D<4,5>(ne,B,pa_data,ea_data);
case 0x56: return EAMassAssemble3D<5,6>(ne,B,pa_data,ea_data);
case 0x67: return EAMassAssemble3D<6,7>(ne,B,pa_data,ea_data);
case 0x78: return EAMassAssemble3D<7,8>(ne,B,pa_data,ea_data);
case 0x89: return EAMassAssemble3D<8,9>(ne,B,pa_data,ea_data);
default: return EAMassAssemble3D(ne,B,pa_data,ea_data,dofs1D,quad1D);
}
}
MFEM_ABORT("Unknown kernel.");
+77 -81
View File
@@ -23,8 +23,9 @@ namespace mfem
// PA Mass Assemble kernel
void MassIntegrator::SetupPA(const FiniteElementSpace &fes)
void MassIntegrator::SetupPA(const FiniteElementSpace &fes, const bool force)
{
// Assuming the same element type
fespace = &fes;
Mesh *mesh = fes.GetMesh();
@@ -33,7 +34,7 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes)
ElementTransformation *T = mesh->GetElementTransformation(0);
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, *T);
#ifdef MFEM_USE_CEED
if (DeviceCanUseCeed())
if (DeviceCanUseCeed() && !force)
{
if (ceedDataPtr) { delete ceedDataPtr; }
CeedData* ptr = new CeedData();
@@ -51,34 +52,30 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes)
dofs1D = maps->ndof;
quad1D = maps->nqpt;
pa_data.SetSize(ne*nq, Device::GetDeviceMemoryType());
Vector coeff;
Vector *coeff{nullptr};
bool own_coeff{true};
if (Q == nullptr)
{
coeff.SetSize(1);
coeff(0) = 1.0;
coeff = new Vector;
coeff->SetSize(1);
(*coeff)(0) = 1.0;
}
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
coeff = new Vector;
coeff->SetSize(1);
(*coeff)(0) = 1.0;
}
else if (QuadratureFunctionCoefficient* cQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
else if (QuadratureCoefficient* cQ = dynamic_cast<QuadratureCoefficient*>(Q))
{
const QuadratureFunction &qFun = cQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
coeff = cQ->Data();
own_coeff = false;
}
else
{
coeff.SetSize(nq * ne);
auto C = Reshape(coeff.HostWrite(), nq, ne);
coeff = new Vector;
coeff->SetSize(nq * ne);
auto C = Reshape(coeff->HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
@@ -92,67 +89,54 @@ void MassIntegrator::SetupPA(const FiniteElementSpace &fes)
if (dim==2)
{
const int NE = ne;
const int Q1D = quad1D;
const bool const_c = coeff.Size() == 1;
const auto W = Reshape(ir->GetWeights().Read(), Q1D,Q1D);
const auto J = Reshape(geom->J.Read(), Q1D,Q1D,2,2,NE);
const auto C = const_c ? Reshape(coeff.Read(), 1,1,1) :
Reshape(coeff.Read(), Q1D,Q1D,NE);
auto v = Reshape(pa_data.Write(), Q1D,Q1D, NE);
MFEM_FORALL_2D(e, NE, Q1D,Q1D,1,
const int NQ = nq;
const bool const_c = coeff->Size() == 1;
auto w = ir->GetWeights().Read();
auto J = Reshape(geom->J.Read(), NQ,2,2,NE);
auto C =
const_c ? Reshape(coeff->Read(), 1,1) : Reshape(coeff->Read(), NQ,NE);
auto v = Reshape(pa_data.Write(), NQ, NE);
MFEM_FORALL(e, NE,
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
for (int q = 0; q < NQ; ++q)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
const double J11 = J(qx,qy,0,0,e);
const double J12 = J(qx,qy,1,0,e);
const double J21 = J(qx,qy,0,1,e);
const double J22 = J(qx,qy,1,1,e);
const double detJ = (J11*J22)-(J21*J12);
const double coeff = const_c ? C(0,0,0) : C(qx,qy,e);
v(qx,qy,e) = W(qx,qy) * coeff * detJ;
}
const double J11 = J(q,0,0,e);
const double J12 = J(q,1,0,e);
const double J21 = J(q,0,1,e);
const double J22 = J(q,1,1,e);
const double detJ = (J11*J22)-(J21*J12);
const double coeff = const_c ? C(0,0) : C(q,e);
v(q,e) = w[q] * coeff * detJ;
}
});
}
if (dim==3)
{
const int NE = ne;
const int Q1D = quad1D;
const bool const_c = coeff.Size() == 1;
const auto W = Reshape(ir->GetWeights().Read(), Q1D,Q1D,Q1D);
const auto J = Reshape(geom->J.Read(), Q1D,Q1D,Q1D,3,3,NE);
const auto C = const_c ? Reshape(coeff.Read(), 1,1,1,1) :
Reshape(coeff.Read(), Q1D,Q1D,Q1D,NE);
auto v = Reshape(pa_data.Write(), Q1D,Q1D,Q1D,NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
const int NQ = nq;
const bool const_c = coeff->Size() == 1;
auto W = ir->GetWeights().Read();
auto J = Reshape(geom->J.Read(), NQ,3,3,NE);
auto C =
const_c ? Reshape(coeff->Read(), 1,1) : Reshape(coeff->Read(), NQ,NE);
auto v = Reshape(pa_data.Write(), NQ,NE);
MFEM_FORALL(e, NE,
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
for (int q = 0; q < NQ; ++q)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
const double J11 = J(qx,qy,qz,0,0,e);
const double J21 = J(qx,qy,qz,1,0,e);
const double J31 = J(qx,qy,qz,2,0,e);
const double J12 = J(qx,qy,qz,0,1,e);
const double J22 = J(qx,qy,qz,1,1,e);
const double J32 = J(qx,qy,qz,2,1,e);
const double J13 = J(qx,qy,qz,0,2,e);
const double J23 = J(qx,qy,qz,1,2,e);
const double J33 = J(qx,qy,qz,2,2,e);
const double detJ = J11 * (J22 * J33 - J32 * J23) -
/* */ J21 * (J12 * J33 - J32 * J13) +
/* */ J31 * (J12 * J23 - J22 * J13);
const double coeff = const_c ? C(0,0,0,0) : C(qx,qy,qz,e);
v(qx,qy,qz,e) = W(qx,qy,qz) * coeff * detJ;
}
}
const double J11 = J(q,0,0,e), J12 = J(q,0,1,e), J13 = J(q,0,2,e);
const double J21 = J(q,1,0,e), J22 = J(q,1,1,e), J23 = J(q,1,2,e);
const double J31 = J(q,2,0,e), J32 = J(q,2,1,e), J33 = J(q,2,2,e);
const double detJ = J11 * (J22 * J33 - J32 * J23) -
/* */ J21 * (J12 * J33 - J32 * J13) +
/* */ J31 * (J12 * J23 - J22 * J13);
const double coeff = const_c ? C(0,0) : C(q,e);
v(q,e) = W[q] * coeff * detJ;
}
});
}
if (own_coeff) { delete coeff; }
}
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
@@ -468,16 +452,8 @@ static void PAMassAssembleDiagonal(const int dim, const int D1D,
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
{
#ifdef MFEM_USE_CEED
if (DeviceCanUseCeed())
{
CeedAssembleDiagonalPA(ceedDataPtr, diag);
}
else
#endif
{
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
}
if (pa_data.Size()==0) { SetupPA(*fespace, true); }
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
}
@@ -675,7 +651,6 @@ static void SmemPAMassApply2D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
@@ -939,7 +914,6 @@ static void SmemPAMassApply3D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
@@ -1230,7 +1204,29 @@ void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
#ifdef MFEM_USE_CEED
if (DeviceCanUseCeed())
{
CeedAddMultPA(ceedDataPtr, x, y);
const CeedScalar *x_ptr;
CeedScalar *y_ptr;
CeedMemType mem;
CeedGetPreferredMemType(internal::ceed, &mem);
if ( Device::Allows(Backend::CUDA) && mem==CEED_MEM_DEVICE )
{
x_ptr = x.Read();
y_ptr = y.ReadWrite();
}
else
{
x_ptr = x.HostRead();
y_ptr = y.HostReadWrite();
mem = CEED_MEM_HOST;
}
CeedVectorSetArray(ceedDataPtr->u, mem, CEED_USE_POINTER,
const_cast<CeedScalar*>(x_ptr));
CeedVectorSetArray(ceedDataPtr->v, mem, CEED_USE_POINTER, y_ptr);
CeedOperatorApplyAdd(ceedDataPtr->oper, ceedDataPtr->u, ceedDataPtr->v,
CEED_REQUEST_IMMEDIATE);
CeedVectorSyncArray(ceedDataPtr->v, mem);
}
else
#endif
+56 -139
View File
@@ -16,171 +16,88 @@ namespace mfem
{
void TransposeIntegrator::AssembleEA(const FiniteElementSpace &fes,
Vector &ea_data, const bool add)
Vector &ea_data)
{
if (add)
Vector ea_data_tmp(ea_data.Size());
ea_data_tmp = 0.0;
bfi->AssembleEA(fes, ea_data_tmp);
const int ne = fes.GetNE();
if (ne == 0) { return; }
const int dofs = fes.GetFE(0)->GetDof();
auto A = Reshape(ea_data_tmp.Write(), dofs, dofs, ne);
auto AT = Reshape(ea_data.Write(), dofs, dofs, ne);
MFEM_FORALL(e, ne,
{
Vector ea_data_tmp(ea_data.Size());
bfi->AssembleEA(fes, ea_data_tmp, false);
const int ne = fes.GetNE();
if (ne == 0) { return; }
const int dofs = fes.GetFE(0)->GetDof();
auto A = Reshape(ea_data_tmp.Read(), dofs, dofs, ne);
auto AT = Reshape(ea_data.ReadWrite(), dofs, dofs, ne);
MFEM_FORALL(e, ne,
for (int i = 0; i < dofs; i++)
{
for (int i = 0; i < dofs; i++)
for (int j = 0; j < dofs; j++)
{
for (int j = 0; j < dofs; j++)
{
const double a = A(i, j, e);
AT(j, i, e) += a;
}
const double a = A(i, j, e);
AT(j, i, e) += a;
}
});
}
else
{
bfi->AssembleEA(fes, ea_data, false);
const int ne = fes.GetNE();
if (ne == 0) { return; }
const int dofs = fes.GetFE(0)->GetDof();
auto A = Reshape(ea_data.ReadWrite(), dofs, dofs, ne);
MFEM_FORALL(e, ne,
{
for (int i = 0; i < dofs; i++)
{
for (int j = i+1; j < dofs; j++)
{
const double aij = A(i, j, e);
const double aji = A(j, i, e);
A(j, i, e) = aij;
A(i, j, e) = aji;
}
}
});
}
}
});
}
void TransposeIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
Vector &ea_data_int,
Vector &ea_data_ext,
const bool add)
Vector &ea_data_ext)
{
const int nf = fes.GetNFbyType(FaceType::Interior);
if (nf == 0) { return; }
if (add)
Vector ea_data_int_tmp(ea_data_int.Size());
Vector ea_data_ext_tmp(ea_data_ext.Size());
ea_data_int_tmp = 0.0;
ea_data_ext_tmp = 0.0;
bfi->AssembleEAInteriorFaces(fes, ea_data_int_tmp, ea_data_ext_tmp);
const int faceDofs = fes.GetTraceElement(0,
fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof();
auto A_int = Reshape(ea_data_int_tmp.Read(), faceDofs, faceDofs, 2, nf);
auto A_ext = Reshape(ea_data_ext_tmp.Read(), faceDofs, faceDofs, 2, nf);
auto AT_int = Reshape(ea_data_int.ReadWrite(), faceDofs, faceDofs, 2, nf);
auto AT_ext = Reshape(ea_data_ext.ReadWrite(), faceDofs, faceDofs, 2, nf);
MFEM_FORALL(f, nf,
{
Vector ea_data_int_tmp(ea_data_int.Size());
Vector ea_data_ext_tmp(ea_data_ext.Size());
bfi->AssembleEAInteriorFaces(fes, ea_data_int_tmp, ea_data_ext_tmp, false);
const int faceDofs = fes.GetTraceElement(0,
fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof();
auto A_int = Reshape(ea_data_int_tmp.Read(), faceDofs, faceDofs, 2, nf);
auto A_ext = Reshape(ea_data_ext_tmp.Read(), faceDofs, faceDofs, 2, nf);
auto AT_int = Reshape(ea_data_int.ReadWrite(), faceDofs, faceDofs, 2, nf);
auto AT_ext = Reshape(ea_data_ext.ReadWrite(), faceDofs, faceDofs, 2, nf);
MFEM_FORALL(f, nf,
for (int i = 0; i < faceDofs; i++)
{
for (int i = 0; i < faceDofs; i++)
for (int j = 0; j < faceDofs; j++)
{
for (int j = 0; j < faceDofs; j++)
{
const double a_int0 = A_int(i, j, 0, f);
const double a_int1 = A_int(i, j, 1, f);
const double a_ext0 = A_ext(i, j, 0, f);
const double a_ext1 = A_ext(i, j, 1, f);
AT_int(j, i, 0, f) += a_int0;
AT_int(j, i, 1, f) += a_int1;
AT_ext(j, i, 0, f) += a_ext1;
AT_ext(j, i, 1, f) += a_ext0;
}
const double a_int0 = A_int(i, j, 0, f);
const double a_int1 = A_int(i, j, 1, f);
const double a_ext0 = A_ext(i, j, 0, f);
const double a_ext1 = A_ext(i, j, 1, f);
AT_int(j, i, 0, f) += a_int0;
AT_int(j, i, 1, f) += a_int1;
AT_ext(j, i, 0, f) += a_ext1;
AT_ext(j, i, 1, f) += a_ext0;
}
});
}
else
{
bfi->AssembleEAInteriorFaces(fes, ea_data_int, ea_data_ext, false);
const int faceDofs = fes.GetTraceElement(0,
fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof();
auto A_int = Reshape(ea_data_int.ReadWrite(), faceDofs, faceDofs, 2, nf);
auto A_ext = Reshape(ea_data_ext.ReadWrite(), faceDofs, faceDofs, 2, nf);
MFEM_FORALL(f, nf,
{
for (int i = 0; i < faceDofs; i++)
{
for (int j = i+1; j < faceDofs; j++)
{
const double aij_int0 = A_int(i, j, 0, f);
const double aij_int1 = A_int(i, j, 1, f);
const double aji_int0 = A_int(j, i, 0, f);
const double aji_int1 = A_int(j, i, 1, f);
A_int(j, i, 0, f) = aij_int0;
A_int(j, i, 1, f) = aij_int1;
A_int(i, j, 0, f) = aji_int0;
A_int(i, j, 1, f) = aji_int1;
}
}
for (int i = 0; i < faceDofs; i++)
{
for (int j = 0; j < faceDofs; j++)
{
const double aij_ext0 = A_ext(i, j, 0, f);
const double aji_ext1 = A_ext(j, i, 1, f);
A_ext(j, i, 1, f) = aij_ext0;
A_ext(i, j, 0, f) = aji_ext1;
}
}
});
}
}
});
}
void TransposeIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace& fes,
Vector &ea_data_bdr,
const bool add)
Vector &ea_data_bdr)
{
const int nf = fes.GetNFbyType(FaceType::Boundary);
if (nf == 0) { return; }
if (add)
Vector ea_data_bdr_tmp(ea_data_bdr.Size());
ea_data_bdr_tmp = 0.0;
bfi->AssembleEABoundaryFaces(fes, ea_data_bdr_tmp);
const int faceDofs = fes.GetTraceElement(0,
fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof();
auto A_bdr = Reshape(ea_data_bdr_tmp.Read(), faceDofs, faceDofs, nf);
auto AT_bdr = Reshape(ea_data_bdr.ReadWrite(), faceDofs, faceDofs, nf);
MFEM_FORALL(f, nf,
{
Vector ea_data_bdr_tmp(ea_data_bdr.Size());
bfi->AssembleEABoundaryFaces(fes, ea_data_bdr_tmp, false);
const int faceDofs = fes.GetTraceElement(0,
fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof();
auto A_bdr = Reshape(ea_data_bdr_tmp.Read(), faceDofs, faceDofs, nf);
auto AT_bdr = Reshape(ea_data_bdr.ReadWrite(), faceDofs, faceDofs, nf);
MFEM_FORALL(f, nf,
for (int i = 0; i < faceDofs; i++)
{
for (int i = 0; i < faceDofs; i++)
for (int j = 0; j < faceDofs; j++)
{
for (int j = 0; j < faceDofs; j++)
{
const double a_bdr = A_bdr(i, j, f);
AT_bdr(j, i, f) += a_bdr;
}
const double a_bdr = A_bdr(i, j, f);
AT_bdr(j, i, f) += a_bdr;
}
});
}
else
{
bfi->AssembleEABoundaryFaces(fes, ea_data_bdr, false);
const int faceDofs = fes.GetTraceElement(0,
fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof();
auto A_bdr = Reshape(ea_data_bdr.ReadWrite(), faceDofs, faceDofs, nf);
MFEM_FORALL(f, nf,
{
for (int i = 0; i < faceDofs; i++)
{
for (int j = i+1; j < faceDofs; j++)
{
const double aij_bdr = A_bdr(i, j, f);
const double aji_bdr = A_bdr(j, i, f);
A_bdr(j, i, f) = aij_bdr;
A_bdr(i, j, f) = aji_bdr;
}
}
});
}
}
});
}
}
File diff suppressed because it is too large Load Diff
+14 -37
View File
@@ -12,6 +12,7 @@
// Implementation of Coefficient class
#include "fem.hpp"
#include "../linalg/dtensor.hpp"
#include <cmath>
#include <limits>
@@ -21,6 +22,13 @@ namespace mfem
using namespace std;
double QuadratureCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
auto coeff = mfem::Reshape(qData->HostRead(), nip, NE);
return coeff(ip.index, T.ElementNo);
}
double PWConstCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
@@ -209,24 +217,18 @@ void GradientGridFunctionCoefficient::Eval(
GridFunc->GetGradients(T, ir, M);
}
CurlGridFunctionCoefficient::CurlGridFunctionCoefficient(
CurlGridFunctionCoefficient::CurlGridFunctionCoefficient (
const GridFunction *gf)
: VectorCoefficient(0)
: VectorCoefficient ((gf) ?
gf -> FESpace() -> GetMesh() -> SpaceDimension() : 0)
{
SetGridFunction(gf);
GridFunc = gf;
}
void CurlGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
{
if (gf)
{
int sdim = gf -> FESpace() -> GetMesh() -> SpaceDimension();
MFEM_VERIFY(sdim == 2 || sdim == 3,
"CurlGridFunctionCoefficient "
"only defind for spaces of dimension 2 or 3.");
}
GridFunc = gf;
vdim = (gf) ? (2 * gf -> FESpace() -> GetMesh() -> SpaceDimension() - 3) : 0;
GridFunc = gf; vdim = (gf) ?
gf -> FESpace() -> GetMesh() -> SpaceDimension() : 0;
}
void CurlGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
@@ -319,31 +321,6 @@ void MatrixFunctionCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
}
}
void MatrixFunctionCoefficient::EvalSymmetric(Vector &K,
ElementTransformation &T,
const IntegrationPoint &ip)
{
MFEM_VERIFY(symmetric && height == width && height < 4 && SymmFunction,
"MatrixFunctionCoefficient is not symmetric");
double x[3];
Vector transip(x, 3);
T.Transform(ip, transip);
K.SetSize((width * (width + 1)) / 2); // 1x1: 1, 2x2: 3, 3x3: 6
if (SymmFunction)
{
(*SymmFunction)(transip, K);
}
if (Q)
{
K *= Q->Eval(T, ip, GetTime());
}
}
MatrixArrayCoefficient::MatrixArrayCoefficient (int dim)
: MatrixCoefficient (dim)
{
+30 -38
View File
@@ -30,10 +30,7 @@ class ParMesh;
/** @brief Base class Coefficients that optionally depend on space and time.
These are used by the BilinearFormIntegrator, LinearFormIntegrator, and
NonlinearFormIntegrator classes to represent the physical coefficients in
the PDEs that are being discretized. This class can also be used in a more
general way to represent functions that don't necessarily belong to a FE
space, e.g., to project onto GridFunctions to use as initial conditions,
exact solutions, etc. See, e.g., ex4 or ex22 for these uses. */
the PDEs that are being discretized. */
class Coefficient
{
protected:
@@ -87,6 +84,33 @@ public:
{ return (constant); }
};
/// class for quadrature coefficient
class QuadratureCoefficient : public Coefficient
{
private:
const int nip;
const int NE;
public:
Vector *qData{nullptr};
//Set external data
QuadratureCoefficient(Vector *Data, int in_nip, int in_NE)
: qData(Data), nip(in_nip), NE(in_NE)
{ }
virtual double Eval(ElementTransformation &T,
const IntegrationPoint &ip);
Vector *Data()
{
return qData;
}
};
/// class for piecewise constant coefficient
/** @brief A piecewise constant coefficient with the constants keyed
off the element attribute numbers. */
class PWConstCoefficient : public Coefficient
@@ -695,16 +719,13 @@ class MatrixCoefficient
protected:
int height, width;
double time;
bool symmetric;
public:
/// Construct a dim x dim matrix coefficient.
explicit MatrixCoefficient(int dim, bool symm=false)
{ height = width = dim; time = 0.; symmetric = symm; }
explicit MatrixCoefficient(int dim) { height = width = dim; time = 0.; }
/// Construct a h x w matrix coefficient.
MatrixCoefficient(int h, int w, bool symm=false) :
height(h), width(w), time(0.), symmetric(symm) { }
MatrixCoefficient(int h, int w) : height(h), width(w), time(0.) { }
/// Set the time for time dependent coefficients
void SetTime(double t) { time = t; }
@@ -721,9 +742,6 @@ public:
/// For backward compatibility get the width of the matrix.
int GetVDim() const { return width; }
void SetSymmetric(bool s) { symmetric = s; }
bool IsSymmetric() const { return symmetric; }
/** @brief Evaluate the matrix coefficient in the element described by @a T
at the point @a ip, storing the result in @a K. */
/** @note When this method is called, the caller must make sure that the
@@ -732,15 +750,6 @@ public:
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip) = 0;
/** @brief Evaluate the upper triangular entries of the matrix coefficient
in the symmetric case, similarly to Eval. Matrix entry (i,j) is stored
in K[j - i + os_i] for 0 <= i <= j < width, os_0 = 0,
os_{i+1} = os_i + width - i. That is, K = {M(0,0), ..., M(0,w-1),
M(1,1), ..., M(1,w-1), ..., M(w-1,w-1) with w = width. */
virtual void EvalSymmetric(Vector &K, ElementTransformation &T,
const IntegrationPoint &ip)
{ mfem_error("MatrixCoefficient::EvalSymmetric"); }
virtual ~MatrixCoefficient() { }
};
@@ -768,7 +777,6 @@ class MatrixFunctionCoefficient : public MatrixCoefficient
{
private:
void (*Function)(const Vector &, DenseMatrix &);
void (*SymmFunction)(const Vector &, Vector &);
void (*TDFunction)(const Vector &, double, DenseMatrix &);
Coefficient *Q;
DenseMatrix mat;
@@ -806,26 +814,10 @@ public:
mat.SetSize(0);
}
/// Construct a symmetric square matrix coefficient from a C-function
/// defining a vector function used by EvalSymmetric
MatrixFunctionCoefficient(int dim, void (*F)(const Vector &, Vector &),
Coefficient *q = NULL)
: MatrixCoefficient(dim, true), Q(q)
{
SymmFunction = F;
Function = NULL;
TDFunction = NULL;
mat.SetSize(0);
}
/// Evaluate the matrix coefficient at @a ip.
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip);
/// Evaluate the symmetric matrix coefficient at @a ip.
virtual void EvalSymmetric(Vector &K, ElementTransformation &T,
const IntegrationPoint &ip);
virtual ~MatrixFunctionCoefficient() { }
};
+193 -442
View File
File diff suppressed because it is too large Load Diff
+12 -75
View File
@@ -38,8 +38,8 @@ protected:
void Destroy() { delete gfr; delete gfi; }
public:
/** @brief Construct a ComplexGridFunction associated with the
FiniteElementSpace @a *f. */
/* @brief Construct a ComplexGridFunction associated with the
FiniteElementSpace @a *f. */
ComplexGridFunction(FiniteElementSpace *f);
void Update();
@@ -71,14 +71,6 @@ public:
const GridFunction & real() const { return *gfr; }
const GridFunction & imag() const { return *gfi; }
/// Update the memory location of the real and imaginary GridFunction @a gfr
/// and @a gfi to match the ComplexGridFunction.
void Sync() { gfr->SyncMemory(*this); gfi->SyncMemory(*this); }
/// Update the alias memory location of the real and imaginary GridFunction
/// @a gfr and @a gfi to match the ComplexGridFunction.
void SyncAlias() { gfr->SyncAliasMemory(*this); gfi->SyncAliasMemory(*this); }
/// Destroys the grid function.
virtual ~ComplexGridFunction() { Destroy(); }
@@ -107,8 +99,8 @@ public:
ComplexOperator::Convention
convention = ComplexOperator::HERMITIAN);
/** @brief Create a ComplexLinearForm on the FiniteElementSpace @a fes, using
the same integrators as the LinearForms @a lf_r (real) and @a lf_i (imag).
/** @brief Create a ComplexLinearForm on the FiniteElementSpace @a f, using
the same integrators as the LinearForms @a lfr (real) and @a lfi (imag) .
The pointer @a fes is not owned by the newly constructed object.
@@ -165,14 +157,6 @@ public:
const LinearForm & real() const { return *lfr; }
const LinearForm & imag() const { return *lfi; }
/// Update the memory location of the real and imaginary LinearForm @a lfr
/// and @a lfi to match the ComplexLinearForm.
void Sync() { lfr->SyncMemory(*this); lfi->SyncMemory(*this); }
/// Update the alias memory location of the real and imaginary LinearForm @a
/// lfr and @a lfi to match the ComplexLinearForm.
void SyncAlias() { lfr->SyncAliasMemory(*this); lfi->SyncAliasMemory(*this); }
void Update();
void Update(FiniteElementSpace *f);
@@ -211,8 +195,8 @@ private:
BilinearForm *blfr;
BilinearForm *blfi;
/* These methods check if the real/imag parts of the sesquilinear form are
not empty */
/* These methods check if the real/imag parts of the sesqulinear form are not
empty */
bool RealInteg();
bool ImagInteg();
@@ -220,7 +204,7 @@ public:
SesquilinearForm(FiniteElementSpace *fes,
ComplexOperator::Convention
convention = ComplexOperator::HERMITIAN);
/** @brief Create a SesquilinearForm on the FiniteElementSpace @a fes, using
/** @brief Create a SesquilinearForm on the FiniteElementSpace @a f, using
the same integrators as the BilinearForms @a bfr and @a bfi .
The pointer @a fes is not owned by the newly constructed object.
@@ -235,21 +219,6 @@ public:
void SetConvention(const ComplexOperator::Convention &
convention) { conv = convention; }
/// Set the desired assembly level.
/** Valid choices are:
- AssemblyLevel::FULL (default)
- AssemblyLevel::PARTIAL
- AssemblyLevel::ELEMENT
- AssemblyLevel::NONE
This method must be called before assembly. */
void SetAssemblyLevel(AssemblyLevel assembly_level)
{
blfr->SetAssemblyLevel(assembly_level);
blfi->SetAssemblyLevel(assembly_level);
}
BilinearForm & real() { return *blfr; }
BilinearForm & imag() { return *blfi; }
const BilinearForm & real() const { return *blfr; }
@@ -339,8 +308,8 @@ protected:
public:
/** @brief Construct a ParComplexGridFunction associated with the
ParFiniteElementSpace @a *pf. */
/* @brief Construct a ParComplexGridFunction associated with the
ParFiniteElementSpace @a *f. */
ParComplexGridFunction(ParFiniteElementSpace *pf);
void Update();
@@ -381,15 +350,6 @@ public:
const ParGridFunction & real() const { return *pgfr; }
const ParGridFunction & imag() const { return *pgfi; }
/// Update the memory location of the real and imaginary ParGridFunction @a
/// pgfr and @a pgfi to match the ParComplexGridFunction.
void Sync() { pgfr->SyncMemory(*this); pgfi->SyncMemory(*this); }
/// Update the alias memory location of the real and imaginary
/// ParGridFunction @a pgfr and @a pgfi to match the ParComplexGridFunction.
void SyncAlias() { pgfr->SyncAliasMemory(*this); pgfi->SyncAliasMemory(*this); }
virtual double ComputeL2Error(Coefficient &exsolr, Coefficient &exsoli,
const IntegrationRule *irs[] = NULL) const
{
@@ -441,8 +401,8 @@ public:
convention = ComplexOperator::HERMITIAN);
/** @brief Create a ParComplexLinearForm on the ParFiniteElementSpace @a pf,
using the same integrators as the LinearForms @a plf_r (real) and
@a plf_i (imag).
using the same integrators as the LinearForms @a plfr (real) and @a plfi
(imag) .
The pointer @a fes is not owned by the newly constructed object.
@@ -500,14 +460,6 @@ public:
const ParLinearForm & real() const { return *plfr; }
const ParLinearForm & imag() const { return *plfi; }
/// Update the memory location of the real and imaginary ParLinearForm @a lfr
/// and @a lfi to match the ParComplexLinearForm.
void Sync() { plfr->SyncMemory(*this); plfi->SyncMemory(*this); }
/// Update the alias memory location of the real and imaginary ParLinearForm
/// @a plfr and @a plfi to match the ParComplexLinearForm.
void SyncAlias() { plfr->SyncAliasMemory(*this); plfi->SyncAliasMemory(*this); }
void Update(ParFiniteElementSpace *pf = NULL);
/// Assembles the linear form i.e. sums over all domain/bdr integrators.
@@ -526,7 +478,7 @@ public:
/** Class for a parallel sesquilinear form
A sesquilinear form is a generalization of a bilinear form to complex-valued
fields. Sesquilinear forms are linear in the second argument but the
fields. Sesquilinear forms are linear in the second argument but but the
first argument involves a complex conjugate in the sense that:
a(alpha u, beta v) = conj(alpha) beta a(u, v)
@@ -572,21 +524,6 @@ public:
void SetConvention(const ComplexOperator::Convention &
convention) { conv = convention; }
/// Set the desired assembly level.
/** Valid choices are:
- AssemblyLevel::FULL (default)
- AssemblyLevel::PARTIAL
- AssemblyLevel::ELEMENT
- AssemblyLevel::NONE
This method must be called before assembly. */
void SetAssemblyLevel(AssemblyLevel assembly_level)
{
pblfr->SetAssemblyLevel(assembly_level);
pblfi->SetAssemblyLevel(assembly_level);
}
ParBilinearForm & real() { return *pblfr; }
ParBilinearForm & imag() { return *pblfi; }
const ParBilinearForm & real() const { return *pblfr; }
-297
View File
@@ -1,297 +0,0 @@
#include "convergence.hpp"
using namespace std;
namespace mfem
{
void ConvergenceStudy::Reset()
{
counter=0;
dcounter=0;
fcounter=0;
cont_type=-1;
print_flag=1;
L2Errors.SetSize(0);
L2Rates.SetSize(0);
DErrors.SetSize(0);
DRates.SetSize(0);
EnErrors.SetSize(0);
EnRates.SetSize(0);
DGFaceErrors.SetSize(0);
DGFaceRates.SetSize(0);
ndofs.SetSize(0);
}
double ConvergenceStudy::GetNorm(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *vector_u)
{
bool norm_set = false;
double norm=0.0;
int order = gf->FESpace()->GetOrder(0);
int order_quad = std::max(2, 2*order+1);
const IntegrationRule *irs[Geometry::NumGeom];
for (int i=0; i < Geometry::NumGeom; ++i)
{
irs[i] = &(IntRules.Get(i, order_quad));
}
#ifdef MFEM_USE_MPI
ParGridFunction *pgf = dynamic_cast<ParGridFunction *>(gf);
if (pgf)
{
ParMesh *pmesh = pgf->ParFESpace()->GetParMesh();
if (scalar_u)
{
norm = ComputeGlobalLpNorm(2.0,*scalar_u,*pmesh,irs);
}
else if (vector_u)
{
norm = ComputeGlobalLpNorm(2.0,*vector_u,*pmesh,irs);
}
norm_set = true;
}
#endif
if (!norm_set)
{
Mesh *mesh = gf->FESpace()->GetMesh();
if (scalar_u)
{
norm = ComputeLpNorm(2.0,*scalar_u,*mesh,irs);
}
else if (vector_u)
{
norm = ComputeLpNorm(2.0,*vector_u,*mesh,irs);
}
}
return norm;
}
void ConvergenceStudy::AddL2Error(GridFunction *gf,
Coefficient *scalar_u, VectorCoefficient *vector_u)
{
int tdofs=0;
#ifdef MFEM_USE_MPI
ParGridFunction *pgf = dynamic_cast<ParGridFunction *>(gf);
if (pgf)
{
MPI_Comm comm = pgf->ParFESpace()->GetComm();
int rank;
MPI_Comm_rank(comm, &rank);
print_flag = 0;
if (rank==0) { print_flag = 1; }
tdofs = pgf->ParFESpace()->GlobalTrueVSize();
}
#endif
if (!tdofs) { tdofs = gf->FESpace()->GetTrueVSize(); }
ndofs.Append(tdofs);
double L2Err;
if (scalar_u)
{
L2Err = gf->ComputeL2Error(*scalar_u);
CoeffNorm = GetNorm(gf,scalar_u,nullptr);
}
else if (vector_u)
{
L2Err = gf->ComputeL2Error(*vector_u);
CoeffNorm = GetNorm(gf,nullptr,vector_u);
}
else
{
MFEM_ABORT("Exact Solution Coefficient pointer is NULL");
}
L2Errors.Append(L2Err);
// Compute the rate of convergence by:
// rate = log (||u - u_h|| / ||u - u_{h/2}||)/log(2)
double val = (counter) ? log(L2Errors[counter-1]/L2Err)/log(2.0) : 0.0;
L2Rates.Append(val);
counter++;
}
void ConvergenceStudy::AddGf(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *grad,
Coefficient *ell_coeff, double Nu)
{
cont_type = gf->FESpace()->FEColl()->GetContType();
MFEM_VERIFY((cont_type == mfem::FiniteElementCollection::CONTINUOUS) ||
(cont_type == mfem::FiniteElementCollection::DISCONTINUOUS),
"This constructor is intended for H1 or L2 Elements")
AddL2Error(gf,scalar_u, nullptr);
if (grad)
{
double GradErr = gf->ComputeGradError(grad);
DErrors.Append(GradErr);
double err = sqrt(L2Errors[counter-1]*L2Errors[counter-1]+GradErr*GradErr);
EnErrors.Append(err);
// Compute the rate of convergence by:
// rate = log (||u - u_h|| / ||u - u_{h/2}||)/log(2)
double val = (dcounter) ? log(DErrors[dcounter-1]/GradErr)/log(2.0) : 0.0;
double eval = (dcounter) ? log(EnErrors[dcounter-1]/err)/log(2.0) : 0.0;
DRates.Append(val);
EnRates.Append(eval);
CoeffDNorm = GetNorm(gf,nullptr,grad);
dcounter++;
MFEM_VERIFY(counter == dcounter,
"Number of added solutions and derivatives do not match")
}
if (cont_type == mfem::FiniteElementCollection::DISCONTINUOUS && ell_coeff)
{
double DGErr = gf->ComputeDGFaceJumpError(scalar_u,ell_coeff,Nu);
DGFaceErrors.Append(DGErr);
// Compute the rate of convergence by:
// rate = log (||u - u_h|| / ||u - u_{h/2}||)/log(2)
double val=(fcounter) ? log(DGFaceErrors[fcounter-1]/DGErr)/log(2.0):0.;
DGFaceRates.Append(val);
fcounter++;
MFEM_VERIFY(fcounter == counter, "Number of added solutions mismatch");
}
}
void ConvergenceStudy::AddGf(GridFunction *gf, VectorCoefficient *vector_u,
VectorCoefficient *curl, Coefficient *div)
{
cont_type = gf->FESpace()->FEColl()->GetContType();
AddL2Error(gf,nullptr,vector_u);
double DErr = 0.0;
bool derivative = false;
if (curl)
{
DErr = gf->ComputeCurlError(curl);
CoeffDNorm = GetNorm(gf,nullptr,curl);
derivative = true;
}
else if (div)
{
DErr = gf->ComputeDivError(div);
// update coefficient norm
CoeffDNorm = GetNorm(gf,div,nullptr);
derivative = true;
}
if (derivative)
{
double err = sqrt(L2Errors[counter-1]*L2Errors[counter-1] + DErr*DErr);
DErrors.Append(DErr);
EnErrors.Append(err);
// Compute the rate of convergence by:
// rate = log (||u - u_h|| / ||u - u_{h/2}||)/log(2)
double val = (dcounter) ? log(DErrors[dcounter-1]/DErr)/log(2.0) : 0.0;
double eval = (dcounter) ? log(EnErrors[dcounter-1]/err)/log(2.0) : 0.0;
DRates.Append(val);
EnRates.Append(eval);
dcounter++;
MFEM_VERIFY(counter == dcounter,
"Number of added solutions and derivatives do not match")
}
}
void ConvergenceStudy::Print(bool relative, std::ostream &out)
{
if (print_flag)
{
std::string title = (relative) ? "Relative " : "Absolute ";
out << "\n";
out << " -------------------------------------------" << "\n";
out << std::setw(21) << title << "L2 Error " << "\n";
out << " -------------------------------------------"
<< "\n";
out << std::right<< std::setw(11)<< "DOFs "<< std::setw(13) << "Error ";
out << std::setw(15) << "Rate " << "\n";
out << " -------------------------------------------"
<< "\n";
out << std::setprecision(4);
double d = (relative) ? CoeffNorm : 1.0;
for (int i =0; i<counter; i++)
{
out << std::right << std::setw(10)<< ndofs[i] << std::setw(16)
<< std::scientific << L2Errors[i]/d << std::setw(13)
<< std::fixed << L2Rates[i] << "\n";
}
out << "\n";
if (dcounter == counter)
{
std::string dname;
switch (cont_type)
{
case 0: dname = "Grad"; break;
case 1: dname = "Curl"; break;
case 2: dname = "Div"; break;
case 3: dname = "DG Grad"; break;
default: break;
}
out << " -------------------------------------------" << "\n";
out << std::setw(21) << title << dname << " Error " << "\n";
out << " -------------------------------------------" << "\n";
out << std::right<<std::setw(11)<< "DOFs "<< std::setw(13) << "Error";
out << std::setw(15) << "Rate " << "\n";
out << " -------------------------------------------"
<< "\n";
out << std::setprecision(4);
d = (relative) ? CoeffDNorm : 1.0;
for (int i =0; i<dcounter; i++)
{
out << std::right << std::setw(10)<< ndofs[i] << std::setw(16)
<< std::scientific << DErrors[i]/d << std::setw(13)
<< std::fixed << DRates[i] << "\n";
}
out << "\n";
switch (cont_type)
{
case 0: dname = "H1"; break;
case 1: dname = "H(Curl)"; break;
case 2: dname = "H(Div)"; break;
case 3: dname = "DG H1"; break;
default: break;
}
if (dcounter)
{
d = (relative) ?
sqrt(CoeffNorm*CoeffNorm + CoeffDNorm*CoeffDNorm):1.0;
out << " -------------------------------------------" << "\n";
out << std::setw(21) << title << dname << " Error " << "\n";
out << " -------------------------------------------" << "\n";
out << std::right<< std::setw(11)<< "DOFs "<< std::setw(13);
out << "Error ";
out << std::setw(15) << "Rate " << "\n";
out << " -------------------------------------------"
<< "\n";
out << std::setprecision(4);
for (int i =0; i<dcounter; i++)
{
out << std::right << std::setw(10)<< ndofs[i] << std::setw(16)
<< std::scientific << EnErrors[i]/d << std::setw(13)
<< std::fixed << EnRates[i] << "\n";
}
out << "\n";
}
if (cont_type == 3 && fcounter)
{
out << " -------------------------------------------" << "\n";
out << " DG Face Jump Error " << "\n";
out << " -------------------------------------------"
<< "\n";
out << std::right<< std::setw(11)<< "DOFs "<< std::setw(13);
out << "Error ";
out << std::setw(15) << "Rate " << "\n";
out << " -------------------------------------------"
<< "\n";
out << std::setprecision(4);
for (int i =0; i<fcounter; i++)
{
out << std::right << std::setw(10)<< ndofs[i] << std::setw(16)
<< std::scientific << DGFaceErrors[i] << std::setw(13)
<< std::fixed << DGFaceRates[i] << "\n";
}
out << "\n";
}
}
}
}
} // namespace mfem
-149
View File
@@ -1,149 +0,0 @@
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_CONVERGENCE
#define MFEM_CONVERGENCE
#include "../linalg/linalg.hpp"
#include "gridfunc.hpp"
#ifdef MFEM_USE_MPI
#include "pgridfunc.hpp"
#endif
namespace mfem
{
/** @brief Class to compute error and convergence rates.
It supports H1, H(curl) (ND elements), H(div) (RT elements) and L2 (DG).
For "smooth enough" solutions the Galerkin error measured in the appropriate
norm satisfies || u - u_h || ~ h^k
Here, k is called the asymptotic rate of convergence
For successive uniform h-refinements the rate can be estimated by
k = log(||u - u_h|| / ||u - u_{h/2}||)/log(2)
*/
class ConvergenceStudy
{
private:
// counters for solutions/derivatives
int counter=0;
int dcounter=0;
int fcounter=0;
// space continuity type
int cont_type=-1;
// printing flag for helpful for MPI calls
int print_flag=1;
// exact solution and derivatives
double CoeffNorm;
double CoeffDNorm;
// Arrays to store error/rates
Array<double> L2Errors, DGFaceErrors, DErrors, EnErrors;
Array<double> L2Rates, DGFaceRates, DRates, EnRates;
Array<int> ndofs;
void AddL2Error(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *vector_u);
void AddGf(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *grad=nullptr,
Coefficient *ell_coeff=nullptr, double Nu=1.0);
void AddGf(GridFunction *gf, VectorCoefficient *vector_u,
VectorCoefficient *curl, Coefficient *div);
// returns the L2-norm of scalar_u or vector_u
double GetNorm(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *vector_u);
public:
/// Clear any internal data
void Reset();
/// Add L2 GridFunction, the exact solution and possibly its gradient and/or
/// DG face jumps parameters
void AddL2GridFunction(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *grad=nullptr,
Coefficient *ell_coeff=nullptr, double Nu=1.0)
{
AddGf(gf, scalar_u, grad, ell_coeff, Nu);
}
/// Add H1 GridFunction, the exact solution and possibly its gradient
void AddH1GridFunction(GridFunction *gf, Coefficient *scalar_u,
VectorCoefficient *grad=nullptr)
{
AddGf(gf, scalar_u, grad);
}
/// Add H(curl) GridFunction, the exact solution and possibly its curl
void AddHcurlGridFunction(GridFunction *gf, VectorCoefficient *vector_u,
VectorCoefficient *curl=nullptr)
{
AddGf(gf, vector_u, curl, nullptr);
}
/// Add H(div) GridFunction, the exact solution and possibly its div
void AddHdivGridFunction(GridFunction *gf, VectorCoefficient *vector_u,
Coefficient *div=nullptr)
{
AddGf(gf,vector_u, nullptr, div);
}
/// Get the L2 error at step n
double GetL2Error(int n)
{
MFEM_VERIFY( n <= counter,"Step out of bounds")
return L2Errors[n];
}
/// Get all L2 errors
void GetL2Errors(Array<double> & L2Errors_)
{
L2Errors_ = L2Errors;
}
/// Get the Grad/Curl/Div error at step n
double GetDError(int n)
{
MFEM_VERIFY(n <= dcounter,"Step out of bounds")
return DErrors[n];
}
/// Get all Grad/Curl/Div errors
void GetDErrors(Array<double> & DErrors_)
{
DErrors_ = DErrors;
}
/// Get the DGFaceJumps error at step n
double GetDGFaceJumpsError(int n)
{
MFEM_VERIFY(n<= fcounter,"Step out of bounds")
return DGFaceErrors[n];
}
/// Get all DGFaceJumps errors
void GetDGFaceJumpsErrors(Array<double> & DGFaceErrors_)
{
DGFaceErrors_ = DGFaceErrors;
}
/// Print rates and errors
void Print(bool relative = false, std::ostream &out = mfem::out);
};
} // namespace mfem
#endif // MFEM_CONVERGENCE
+8 -42
View File
@@ -415,6 +415,9 @@ void VisItDataCollection::SetMesh(MPI_Comm comm, Mesh *new_mesh)
void VisItDataCollection::RegisterField(const std::string& name,
GridFunction *gf)
{
DataCollection::RegisterField(name, gf);
field_info_map[name] = VisItFieldInfo("nodes", gf->VectorDim());
int LOD = 1;
if (gf->FESpace()->GetNURBSext())
{
@@ -428,27 +431,6 @@ void VisItDataCollection::RegisterField(const std::string& name,
}
}
DataCollection::RegisterField(name, gf);
field_info_map[name] = VisItFieldInfo("nodes", gf->VectorDim(), LOD);
visit_levels_of_detail = std::max(visit_levels_of_detail, LOD);
}
void VisItDataCollection::RegisterQField(const std::string& name,
QuadratureFunction *qf)
{
int LOD = -1;
Mesh *mesh = qf->GetSpace()->GetMesh();
for (int e=0; e<qf->GetSpace()->GetNE(); e++)
{
int locLOD = GlobGeometryRefiner.GetRefinementLevelFromElems(
mesh->GetElementBaseGeometry(e),
qf->GetElementIntRule(e).GetNPoints());
LOD = std::max(LOD,locLOD);
}
DataCollection::RegisterQField(name, qf);
field_info_map[name] = VisItFieldInfo("elements", 1, LOD);
visit_levels_of_detail = std::max(visit_levels_of_detail, LOD);
}
@@ -563,8 +545,6 @@ void VisItDataCollection::LoadVisItRootFile(const std::string& root_name)
void VisItDataCollection::LoadMesh()
{
// GetMeshFileName() uses 'serial', so we need to set it in advance.
serial = (format == SERIAL_FORMAT);
std::string mesh_fname = GetMeshFileName();
named_ifgzstream file(mesh_fname);
// TODO: in parallel, check for errors on all processors
@@ -618,28 +598,14 @@ void VisItDataCollection::LoadFields()
// TODO: 1) load parallel GridFunction on one processor
if (serial)
{
if ((it->second).association == "nodes")
{
field_map.Register(it->first, new GridFunction(mesh, file), own_data);
}
else if ((it->second).association == "elements")
{
q_field_map.Register(it->first, new QuadratureFunction(mesh, file), own_data);
}
field_map.Register(it->first, new GridFunction(mesh, file), own_data);
}
else
{
#ifdef MFEM_USE_MPI
if ((it->second).association == "nodes")
{
field_map.Register(
it->first,
new ParGridFunction(dynamic_cast<ParMesh*>(mesh), file), own_data);
}
else if ((it->second).association == "elements")
{
q_field_map.Register(it->first, new QuadratureFunction(mesh, file), own_data);
}
field_map.Register(
it->first,
new ParGridFunction(dynamic_cast<ParMesh*>(mesh), file), own_data);
#else
error = READ_ERROR;
MFEM_WARNING("Reading parallel format in serial is not supported");
@@ -674,7 +640,7 @@ std::string VisItDataCollection::GetVisItRootString()
{
ftags["assoc"] = picojson::value((it->second).association);
ftags["comps"] = picojson::value(to_string((it->second).num_components));
ftags["lod"] = picojson::value(to_string((it->second).lod));
ftags["lod"] = picojson::value(to_string(visit_levels_of_detail));
field["path"] = picojson::value(path_str + it->first + file_ext_format);
field["tags"] = picojson::value(ftags);
fields[it->first] = picojson::value(field);
+3 -10
View File
@@ -391,10 +391,9 @@ class VisItFieldInfo
public:
std::string association;
int num_components;
int lod;
VisItFieldInfo() { association = ""; num_components = 0; lod = 1;}
VisItFieldInfo(std::string _association, int _num_components, int _lod = 1)
{ association = _association; num_components = _num_components; lod =_lod;}
VisItFieldInfo() { association = ""; num_components = 0; }
VisItFieldInfo(std::string _association, int _num_components)
{ association = _association; num_components = _num_components; }
};
/// Data collection with VisIt I/O routines
@@ -446,12 +445,6 @@ public:
/// Add a grid function to the collection and update the root file
virtual void RegisterField(const std::string& field_name, GridFunction *gf);
/// Add a quadrature function to the collection and update the root file.
/** Visualization of quadrature function is not supported in VisIt(3.12).
A patch has been sent to VisIt developers in June 2020. */
virtual void RegisterQField(const std::string& q_field_name,
QuadratureFunction *qf);
/// Set VisIt parameter: default levels of detail for the MultiresControl
void SetLevelsOfDetail(int levels_of_detail);
+15 -21
View File
@@ -552,32 +552,26 @@ void IntegrationPointTransformation::Transform (const IntegrationRule &ir1,
}
}
void FaceElementTransformations::SetIntPoint(const IntegrationPoint *face_ip)
void FaceElementTransformations::SetIntPoint(const IntegrationPoint *ip)
{
IsoparametricTransformation::SetIntPoint(face_ip);
IsoparametricTransformation::SetIntPoint(ip);
if (mask & 4)
if (Elem1)
{
Loc1.Transform(*face_ip, eip1);
if (Elem1)
{
Elem1->SetIntPoint(&eip1);
}
Loc1.Transform(*ip, eip1);
Elem1->SetIntPoint(&eip1);
}
if (mask & 8)
if (Elem2)
{
Loc2.Transform(*face_ip, eip2);
if (Elem2)
{
Elem2->SetIntPoint(&eip2);
}
Loc2.Transform(*ip, eip2);
Elem2->SetIntPoint(&eip2);
}
}
ElementTransformation &
FaceElementTransformations::GetElement1Transformation()
{
MFEM_VERIFY(mask & HAVE_ELEM1 && Elem1 != NULL, "The ElementTransformation "
MFEM_VERIFY(mask & 1 && Elem1 != NULL, "The ElementTransformation "
"for the element has not been configured for side 1.");
return *Elem1;
}
@@ -585,7 +579,7 @@ FaceElementTransformations::GetElement1Transformation()
ElementTransformation &
FaceElementTransformations::GetElement2Transformation()
{
MFEM_VERIFY(mask & HAVE_ELEM2 && Elem2 != NULL, "The ElementTransformation "
MFEM_VERIFY(mask & 2 && Elem2 != NULL, "The ElementTransformation "
"for the element has not been configured for side 2.");
return *Elem2;
}
@@ -593,7 +587,7 @@ FaceElementTransformations::GetElement2Transformation()
IntegrationPointTransformation &
FaceElementTransformations::GetIntPoint1Transformation()
{
MFEM_VERIFY(mask & HAVE_LOC1, "The IntegrationPointTransformation "
MFEM_VERIFY(mask & 4, "The IntegrationPointTransformation "
"for the element has not been configured for side 1.");
return Loc1;
}
@@ -601,7 +595,7 @@ FaceElementTransformations::GetIntPoint1Transformation()
IntegrationPointTransformation &
FaceElementTransformations::GetIntPoint2Transformation()
{
MFEM_VERIFY(mask & HAVE_LOC2, "The IntegrationPointTransformation "
MFEM_VERIFY(mask & 8, "The IntegrationPointTransformation "
"for the element has not been configured for side 2.");
return Loc2;
}
@@ -609,7 +603,7 @@ FaceElementTransformations::GetIntPoint2Transformation()
void FaceElementTransformations::Transform(const IntegrationPoint &ip,
Vector &trans)
{
MFEM_VERIFY(mask & HAVE_FACE, "The ElementTransformation "
MFEM_VERIFY(mask & 16, "The ElementTransformation "
"for the face has not been configured.");
IsoparametricTransformation::Transform(ip, trans);
}
@@ -617,7 +611,7 @@ void FaceElementTransformations::Transform(const IntegrationPoint &ip,
void FaceElementTransformations::Transform(const IntegrationRule &ir,
DenseMatrix &tr)
{
MFEM_VERIFY(mask & HAVE_FACE, "The ElementTransformation "
MFEM_VERIFY(mask & 16, "The ElementTransformation "
"for the face has not been configured.");
IsoparametricTransformation::Transform(ir, tr);
}
@@ -625,7 +619,7 @@ void FaceElementTransformations::Transform(const IntegrationRule &ir,
void FaceElementTransformations::Transform(const DenseMatrix &matrix,
DenseMatrix &result)
{
MFEM_VERIFY(mask & HAVE_FACE, "The ElementTransformation "
MFEM_VERIFY(mask & 16, "The ElementTransformation "
"for the face has not been configured.");
IsoparametricTransformation::Transform(matrix, result);
}
+11 -100
View File
@@ -77,9 +77,6 @@ public:
ElementTransformation();
/** @brief Force the reevaluation of the Jacobian in the next call. */
void Reset() { EvalState = 0; }
/** @brief Set the integration point @a ip that weights and Jacobians will
be evaluated at. */
void SetIntPoint(const IntegrationPoint *ip)
@@ -360,17 +357,9 @@ private:
// Evaluate the Hessian of the transformation at the IntPoint and store it
// in d2Fdx2.
virtual const DenseMatrix &EvalHessian();
public:
IsoparametricTransformation() : FElem(NULL) {}
/// Set the element that will be used to compute the transformations
void SetFE(const FiniteElement *FE)
{
MFEM_ASSERT(FE != NULL, "Must provide a valid FiniteElement object!");
EvalState = (FE != FElem) ? 0 : EvalState;
FElem = FE; geom = FE->GetGeomType();
}
void SetFE(const FiniteElement *FE) { FElem = FE; geom = FE->GetGeomType(); }
/// Get the current element used to compute the transformations
const FiniteElement* GetFE() const { return FElem; }
@@ -385,15 +374,12 @@ public:
the column-vector of all basis functions evaluated at \f$ \hat x \f$ .
The columns of @a P represent the control points in physical space
defining the transformation. */
void SetPointMat(const DenseMatrix &pm) { PointMat = pm; EvalState = 0; }
void SetPointMat(const DenseMatrix &pm) { PointMat = pm; }
/// Return the stored point matrix.
const DenseMatrix &GetPointMat() const { return PointMat; }
/// @brief Write access to the stored point matrix. Use with caution.
/** If the point matrix is altered using this member function the Reset
function should also be called to force the reevaluation of the
Jacobian, etc.. */
/// Write access to the stored point matrix. Use with caution.
DenseMatrix &GetPointMat() { return PointMat; }
/// Set the FiniteElement Geometry for the reference elements being used.
@@ -453,57 +439,15 @@ public:
void Transform (const IntegrationRule &, IntegrationRule &);
};
/** @brief A specialized ElementTransformation class representing a face and
its two neighboring elements.
This class can be used as a container for the element transformation data
needed for integrating discontinuous fields on element interfaces in a
Discontinuous Galerkin (DG) context.
The secondary purpose of this class is to enable the
GridFunction::GetValue function, and various related functions, to properly
evaluate fields with limited continuity on boundary elements.
*/
class FaceElementTransformations : public IsoparametricTransformation
{
private:
// Bitwise OR of ConfigMasks
int mask;
IntegrationPoint eip1, eip2;
protected: // interface for Mesh to be able to configure this object.
friend class Mesh;
#ifdef MFEM_USE_MPI
friend class ParMesh;
#endif
/// Set the mask indicating which portions of the object have been setup
/** The argument @a m is a bitmask used in
Mesh::GetFaceElementTransformations to indicate which portions of the
FaceElementTransformations object have been configured.
mask & 1: Elem1 is configured
mask & 2: Elem2 is configured
mask & 4: Loc1 is configured
mask & 8: Loc2 is configured
mask & 16: The Face transformation itself is configured
*/
void SetConfigurationMask(int m) { mask = m; }
public:
enum ConfigMasks
{
HAVE_ELEM1 = 1, ///< Element on side 1 is configured
HAVE_ELEM2 = 2, ///< Element on side 2 is configured
HAVE_LOC1 = 4, ///< Point transformation for side 1 is configured
HAVE_LOC2 = 8, ///< Point transformation for side 2 is configured
HAVE_FACE = 16 ///< Face transformation is configured
};
int Elem1No, Elem2No;
Geometry::Type &FaceGeom; ///< @deprecated Use GetGeometryType instead
ElementTransformation *Elem1, *Elem2;
@@ -522,10 +466,10 @@ public:
*/
void SetGeometryType(Geometry::Type g) { geom = g; }
/** @brief Return the mask defining the configuration state.
The mask value indicates which portions of FaceElementTransformations
object have been configured.
/// Set the mask indicating which portions of the object have been setup
/** The argument @a m is a bitmask used in
Mesh::GetFaceElementTransformations to indicate which portions of the
FaceElement Transformations object have been configured.
mask & 1: Elem1 is configured
mask & 2: Elem2 is configured
@@ -533,45 +477,12 @@ public:
mask & 8: Loc2 is configured
mask & 16: The Face transformation itself is configured
*/
int GetConfigurationMask() const { return mask; }
void SetConfigurationMask(int m) { mask = m; }
int GetConfigurationMask() const { return mask; }
/** @brief Set the integration point in the Face and the two neighboring
elements, if present.
The point @a face_ip must be in the reference coordinate system of the
face.
*/
void SetIntPoint(const IntegrationPoint *face_ip);
/** @brief Set the integration point in the Face and the two neighboring
elements, if present.
This is a more expressive member function name than SetIntPoint, which
in this special case, does the same thing. This function can be used for
greater code clarity.
*/
inline void SetAllIntPoints(const IntegrationPoint *face_ip)
{ FaceElementTransformations::SetIntPoint(face_ip); }
/** @brief Get a const reference to the integration point in neighboring
element 1 corresponding to the currently set integration point on the
face.
This IntegrationPoint object will only contain up-to-date data if
SetIntPoint or SetAllIntPoints has been called with the latest
integration point for the face and the appropriate point transformation
has been configured. */
const IntegrationPoint &GetElement1IntPoint() { return eip1; }
/** @brief Get a const reference to the integration point in neighboring
element 2 corresponding to the currently set integration point on the
face.
This IntegrationPoint object will only contain up-to-date data if
SetIntPoint or SetAllIntPoints has been called with the latest
integration point for the face and the appropriate point transformation
has been configured. */
const IntegrationPoint &GetElement2IntPoint() { return eip2; }
elements, if present. */
void SetIntPoint(const IntegrationPoint *ip);
virtual void Transform(const IntegrationPoint &, Vector &);
virtual void Transform(const IntegrationRule &, DenseMatrix &);
-203
View File
@@ -139,12 +139,6 @@ void FiniteElement::Project (
mfem_error ("FiniteElement::Project (...) (vector) is not overloaded !");
}
void FiniteElement::ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{
mfem_error ("FiniteElement::ProjectFromNodes() (vector) is not overloaded!");
}
void FiniteElement::ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{
@@ -931,23 +925,6 @@ void VectorFiniteElement::Project_RT(
}
}
void VectorFiniteElement::Project_RT(
const double *nk, const Array<int> &d2n,
Vector &vc, ElementTransformation &Trans, Vector &dofs) const
{
const int sdim = Trans.GetSpaceDim();
const bool square_J = (dim == sdim);
for (int k = 0; k < dof; k++)
{
Trans.SetIntPoint(&Nodes.IntPoint(k));
// dof_k = nk^t adj(J) xk
Vector vk(vc.GetData()+k*sdim, sdim);
dofs(k) = Trans.AdjugateJacobian().InnerProduct(vk, nk + d2n[k]*dim);
if (!square_J) { dofs(k) /= Trans.Weight(); }
}
}
void VectorFiniteElement::ProjectMatrixCoefficient_RT(
const double *nk, const Array<int> &d2n,
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
@@ -1124,19 +1101,6 @@ void VectorFiniteElement::Project_ND(
}
}
void VectorFiniteElement::Project_ND(
const double *tk, const Array<int> &d2t,
Vector &vc, ElementTransformation &Trans, Vector &dofs) const
{
for (int k = 0; k < dof; k++)
{
Trans.SetIntPoint(&Nodes.IntPoint(k));
Vector vk(vc.GetData()+k*dim, dim);
// dof_k = xk^t J tk
dofs(k) = Trans.Jacobian().InnerProduct(tk + d2t[k]*dim, vk);
}
}
void VectorFiniteElement::ProjectMatrixCoefficient_ND(
const double *tk, const Array<int> &d2t,
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
@@ -7070,95 +7034,6 @@ void Poly_1D::Basis::Eval(const double y, Vector &u, Vector &d) const
}
}
void Poly_1D::Basis::Eval(const double y, Vector &u, Vector &d,
Vector &d2) const
{
MFEM_VERIFY(etype == Barycentric,
"Basis::Eval with second order derivatives not implemented for"
" etype = " << etype);
switch (etype)
{
case ChangeOfBasis:
{
CalcBasis(Ai.Width() - 1, y, x, w);
Ai.Mult(x, u);
Ai.Mult(w, d);
// set d2 (not implemented yet)
break;
}
case Barycentric:
{
int i, k, p = x.Size() - 1;
double l, lp, lp2, lk, sk, si, sk2;
if (p == 0)
{
u(0) = 1.0;
d(0) = 0.0;
d2(0) = 0.0;
return;
}
lk = 1.0;
for (k = 0; k < p; k++)
{
if (y >= (x(k) + x(k+1))/2)
{
lk *= y - x(k);
}
else
{
for (i = k+1; i <= p; i++)
{
lk *= y - x(i);
}
break;
}
}
l = lk * (y - x(k));
sk = 0.0;
sk2 = 0.0;
for (i = 0; i < k; i++)
{
si = 1.0/(y - x(i));
sk += si;
sk2 -= si * si;
u(i) = l * si * w(i);
}
u(k) = lk * w(k);
for (i++; i <= p; i++)
{
si = 1.0/(y - x(i));
sk += si;
sk2 -= si * si;
u(i) = l * si * w(i);
}
lp = l * sk + lk;
lp2 = lp * sk + l * sk2 + sk * lk;
for (i = 0; i < k; i++)
{
d(i) = (lp * w(i) - u(i))/(y - x(i));
d2(i) = (lp2 * w(i) - 2 * d(i))/(y - x(i));
}
d(k) = sk * u(k);
d2(k) = sk2 * u(k) + sk * d(k);
for (i++; i <= p; i++)
{
d(i) = (lp * w(i) - u(i))/(y - x(i));
d2(i) = (lp2 * w(i) - 2 * d(i))/(y - x(i));
}
break;
}
case Positive:
CalcBernstein(x.Size() - 1, y, u, d);
break;
default: break;
}
}
const int *Poly_1D::Binom(const int p)
{
if (binom.NumCols() <= p)
@@ -7714,7 +7589,6 @@ H1_SegmentElement::H1_SegmentElement(const int p, const int btype)
#ifndef MFEM_THREAD_SAFE
shape_x.SetSize(p+1);
dshape_x.SetSize(p+1);
d2shape_x.SetSize(p+1);
#endif
Nodes.IntPoint(0).x = cp[0];
@@ -7763,25 +7637,6 @@ void H1_SegmentElement::CalcDShape(const IntegrationPoint &ip,
}
}
void H1_SegmentElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p+1), dshape_x(p+1), d2shape_x(p+1);
#endif
basis1d.Eval(ip.x, shape_x, dshape_x, d2shape_x);
Hessian(0,0) = d2shape_x(0);
Hessian(1,0) = d2shape_x(p);
for (int i = 1; i < p; i++)
{
Hessian(i+1,0) = d2shape_x(i);
}
}
void H1_SegmentElement::ProjectDelta(int vertex, Vector &dofs) const
{
const int p = order;
@@ -7822,8 +7677,6 @@ H1_QuadrilateralElement::H1_QuadrilateralElement(const int p, const int btype)
shape_y.SetSize(p1);
dshape_x.SetSize(p1);
dshape_y.SetSize(p1);
d2shape_x.SetSize(p1);
d2shape_y.SetSize(p1);
#endif
int o = 0;
@@ -7877,30 +7730,6 @@ void H1_QuadrilateralElement::CalcDShape(const IntegrationPoint &ip,
}
}
void H1_QuadrilateralElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p+1), shape_y(p+1), dshape_x(p+1), dshape_y(p+1),
d2shape_x(p+1), d2shape_y(p+1);
#endif
basis1d.Eval(ip.x, shape_x, dshape_x, d2shape_x);
basis1d.Eval(ip.y, shape_y, dshape_y, d2shape_y);
for (int o = 0, j = 0; j <= p; j++)
{
for (int i = 0; i <= p; i++)
{
Hessian(dof_map[o],0) = d2shape_x(i)* shape_y(j);
Hessian(dof_map[o],1) = dshape_x(i)* dshape_y(j);
Hessian(dof_map[o],2) = shape_x(i)*d2shape_y(j); o++;
}
}
}
void H1_QuadrilateralElement::ProjectDelta(int vertex, Vector &dofs) const
{
const int p = order;
@@ -7964,9 +7793,6 @@ H1_HexahedronElement::H1_HexahedronElement(const int p, const int btype)
dshape_x.SetSize(p1);
dshape_y.SetSize(p1);
dshape_z.SetSize(p1);
d2shape_x.SetSize(p1);
d2shape_y.SetSize(p1);
d2shape_z.SetSize(p1);
#endif
int o = 0;
@@ -8023,35 +7849,6 @@ void H1_HexahedronElement::CalcDShape(const IntegrationPoint &ip,
}
}
void H1_HexahedronElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p+1), shape_y(p+1), shape_z(p+1);
Vector dshape_x(p+1), dshape_y(p+1), dshape_z(p+1);
Vector d2shape_x(p+1), d2shape_y(p+1), ds2hape_z(p+1);
#endif
basis1d.Eval(ip.x, shape_x, dshape_x, d2shape_x);
basis1d.Eval(ip.y, shape_y, dshape_y, d2shape_y);
basis1d.Eval(ip.z, shape_z, dshape_z, d2shape_z);
for (int o = 0, k = 0; k <= p; k++)
for (int j = 0; j <= p; j++)
for (int i = 0; i <= p; i++)
{
Hessian(dof_map[o],0) = d2shape_x(i)* shape_y(j)* shape_z(k);
Hessian(dof_map[o],1) = dshape_x(i)* dshape_y(j)* shape_z(k);
Hessian(dof_map[o],2) = dshape_x(i)* shape_y(j)* dshape_z(k);
Hessian(dof_map[o],3) = shape_x(i)*d2shape_y(j)* shape_z(k);
Hessian(dof_map[o],4) = shape_x(i)* dshape_y(j)* dshape_z(k);
Hessian(dof_map[o],5) = shape_x(i)* shape_y(j)*d2shape_z(k);
o++;
}
}
void H1_HexahedronElement::ProjectDelta(int vertex, Vector &dofs) const
{
const int p = order;
+11 -64
View File
@@ -37,8 +37,7 @@ public:
ClosedUniform = 4, ///< Nodes: x_i = i/(n-1), i=0,...,n-1
OpenHalfUniform = 5, ///< Nodes: x_i = (i+1/2)/n, i=0,...,n-1
Serendipity = 6, ///< Serendipity basis (squares / cubes)
ClosedGL = 7, ///< Closed GaussLegendre
NumBasisTypes = 8 /**< Keep track of maximum types to prevent
NumBasisTypes = 7 /**< Keep track of maximum types to prevent
hard-coding */
};
/** @brief If the input does not represents a valid BasisType, abort with an
@@ -70,7 +69,6 @@ public:
case ClosedUniform: return Quadrature1D::ClosedUniform;
case OpenHalfUniform: return Quadrature1D::OpenHalfUniform;
case Serendipity: return Quadrature1D::GaussLobatto;
case ClosedGL: return Quadrature1D::ClosedGL;
}
return Quadrature1D::Invalid;
}
@@ -84,7 +82,6 @@ public:
case Quadrature1D::OpenUniform: return OpenUniform;
case Quadrature1D::ClosedUniform: return ClosedUniform;
case Quadrature1D::OpenHalfUniform: return OpenHalfUniform;
case Quadrature1D::ClosedGL: return ClosedGL;
}
return Invalid;
}
@@ -446,7 +443,7 @@ public:
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
part of the Hessian of one shape function.
The order in 2D is {u_xx, u_xy, u_yy}.
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
The size (#dof x (#dim (#dim-1)/2) of @a Hessian must be set in advance.*/
virtual void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
@@ -504,21 +501,14 @@ public:
/** @brief Given a coefficient and a transformation, compute its projection
(approximation) in the local finite dimensional space in terms
of the degrees of freedom. */
virtual void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const;
virtual void Project (Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const;
/** @brief Given a vector coefficient and a transformation, compute its
projection (approximation) in the local finite dimensional space
in terms of the degrees of freedom. (VectorFiniteElements) */
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const;
/** @brief Given a vector of values at the finite element nodes and a
transformation, compute its projection (approximation) in the local
finite dimensional space in terms of the degrees of freedom. Valid for
VectorFiniteElements. */
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const;
virtual void Project (VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const;
/** @brief Given a matrix coefficient and a transformation, compute an
approximation ("projection") in the local finite dimensional space in
@@ -804,12 +794,7 @@ protected:
VectorCoefficient &vc, ElementTransformation &Trans,
Vector &dofs) const;
/// Projects the vector of values given at FE nodes to RT space
void Project_RT(const double *nk, const Array<int> &d2n,
Vector &vc, ElementTransformation &Trans,
Vector &dofs) const;
/// Project the rows of the matrix coefficient in an RT space
// project the rows of the matrix coefficient in an RT space
void ProjectMatrixCoefficient_RT(
const double *nk, const Array<int> &d2n,
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const;
@@ -837,12 +822,7 @@ protected:
VectorCoefficient &vc, ElementTransformation &Trans,
Vector &dofs) const;
/// Projects the vector of values given at FE nodes to ND space
void Project_ND(const double *tk, const Array<int> &d2t,
Vector &vc, ElementTransformation &Trans,
Vector &dofs) const;
/// Project the rows of the matrix coefficient in an ND space
/// project the rows of the matrix coefficient in an ND space
void ProjectMatrixCoefficient_ND(
const double *tk, const Array<int> &d2t,
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const;
@@ -1867,7 +1847,6 @@ public:
Basis(const int p, const double *nodes, EvalType etype = Barycentric);
void Eval(const double x, Vector &u) const;
void Eval(const double x, Vector &u, Vector &d) const;
void Eval(const double x, Vector &u, Vector &d, Vector &d2) const;
};
private:
@@ -2118,7 +2097,7 @@ class H1_SegmentElement : public NodalTensorFiniteElement
{
private:
#ifndef MFEM_THREAD_SAFE
mutable Vector shape_x, dshape_x, d2shape_x;
mutable Vector shape_x, dshape_x;
#endif
public:
@@ -2127,8 +2106,6 @@ public:
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
virtual void ProjectDelta(int vertex, Vector &dofs) const;
};
@@ -2138,7 +2115,7 @@ class H1_QuadrilateralElement : public NodalTensorFiniteElement
{
private:
#ifndef MFEM_THREAD_SAFE
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
mutable Vector shape_x, shape_y, dshape_x, dshape_y;
#endif
public:
@@ -2148,8 +2125,6 @@ public:
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
virtual void ProjectDelta(int vertex, Vector &dofs) const;
};
@@ -2159,8 +2134,7 @@ class H1_HexahedronElement : public NodalTensorFiniteElement
{
private:
#ifndef MFEM_THREAD_SAFE
mutable Vector shape_x, shape_y, shape_z, dshape_x, dshape_y, dshape_z,
d2shape_x, d2shape_y, d2shape_z;
mutable Vector shape_x, shape_y, shape_z, dshape_x, dshape_y, dshape_z;
#endif
public:
@@ -2169,8 +2143,6 @@ public:
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
virtual void ProjectDelta(int vertex, Vector &dofs) const;
};
@@ -2706,9 +2678,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_RT(nk, dof2nk, mc, T, dofs); }
@@ -2767,9 +2736,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_RT(nk, dof2nk, mc, T, dofs); }
@@ -2821,9 +2787,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_RT(nk, dof2nk, mc, T, dofs); }
@@ -2881,9 +2844,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_RT(nk, dof2nk, mc, T, dofs); }
@@ -2943,10 +2903,6 @@ public:
ElementTransformation &Trans, Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_ND(tk, dof2tk, mc, T, dofs); }
@@ -3006,9 +2962,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_ND(tk, dof2tk, mc, T, dofs); }
@@ -3060,9 +3013,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_ND(tk, dof2tk, mc, T, dofs); }
@@ -3119,9 +3069,6 @@ public:
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectFromNodes(Vector &vc, ElementTransformation &Trans,
Vector &dofs) const
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_ND(tk, dof2tk, mc, T, dofs); }
-1
View File
@@ -19,7 +19,6 @@
#include "eltrans.hpp"
#include "coefficient.hpp"
#include "complex_fem.hpp"
#include "convergence.hpp"
#include "lininteg.hpp"
#include "nonlininteg.hpp"
#include "bilininteg.hpp"
-3
View File
@@ -440,7 +440,6 @@ void FiniteElementSpace::MarkerToList(const Array<int> &marker,
if (marker[i]) { num_marked++; }
}
list.SetSize(0);
list.HostWrite();
list.Reserve(num_marked);
for (int i = 0; i < marker.Size(); i++)
{
@@ -452,9 +451,7 @@ void FiniteElementSpace::MarkerToList(const Array<int> &marker,
void FiniteElementSpace::ListToMarker(const Array<int> &list, int marker_size,
Array<int> &marker, int mark_val)
{
list.HostRead(); // make sure we can read the array on host
marker.SetSize(marker_size);
marker.HostWrite();
marker = 0;
for (int i = 0; i < list.Size(); i++)
{
-6
View File
@@ -756,12 +756,6 @@ public:
/// Return the total number of quadrature points.
int GetSize() const { return size; }
/// Returns the mesh
inline Mesh *GetMesh() const { return mesh; }
/// Returns number of elements in the mesh.
inline int GetNE() const { return mesh->GetNE(); }
/// Get the IntegrationRule associated with mesh element @a idx.
const IntegrationRule &GetElementIntRule(int idx) const
{ return *int_rule[mesh->GetElementBaseGeometry(idx)]; }
+33 -141
View File
@@ -1344,14 +1344,15 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
return NULL;
}
ir = FindInIntPts(Geom, Times-1);
if (ir) { return ir; }
ir = new IntegrationRule(Times-1);
for (int i = 1; i < Times; i++)
if (ir == NULL)
{
IntegrationPoint &ip = ir->IntPoint(i-1);
ip.x = double(i) / Times;
ip.y = ip.z = 0.0;
ir = new IntegrationRule(Times-1);
for (int i = 1; i < Times; i++)
{
IntegrationPoint &ip = ir->IntPoint(i-1);
ip.x = double(i) / Times;
ip.y = ip.z = 0.0;
}
}
}
break;
@@ -1363,17 +1364,18 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
return NULL;
}
ir = FindInIntPts(Geom, ((Times-1)*(Times-2))/2);
if (ir) { return ir; }
ir = new IntegrationRule(((Times-1)*(Times-2))/2);
for (int k = 0, j = 1; j < Times-1; j++)
for (int i = 1; i < Times-j; i++, k++)
{
IntegrationPoint &ip = ir->IntPoint(k);
ip.x = double(i) / Times;
ip.y = double(j) / Times;
ip.z = 0.0;
}
if (ir == NULL)
{
ir = new IntegrationRule(((Times-1)*(Times-2))/2);
for (int k = 0, j = 1; j < Times-1; j++)
for (int i = 1; i < Times-j; i++, k++)
{
IntegrationPoint &ip = ir->IntPoint(k);
ip.x = double(i) / Times;
ip.y = double(j) / Times;
ip.z = 0.0;
}
}
}
break;
@@ -1384,17 +1386,18 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
return NULL;
}
ir = FindInIntPts(Geom, (Times-1)*(Times-1));
if (ir) { return ir; }
ir = new IntegrationRule((Times-1)*(Times-1));
for (int k = 0, j = 1; j < Times; j++)
for (int i = 1; i < Times; i++, k++)
{
IntegrationPoint &ip = ir->IntPoint(k);
ip.x = double(i) / Times;
ip.y = double(j) / Times;
ip.z = 0.0;
}
if (ir == NULL)
{
ir = new IntegrationRule((Times-1)*(Times-1));
for (int k = 0, j = 1; j < Times; j++)
for (int i = 1; i < Times; i++, k++)
{
IntegrationPoint &ip = ir->IntPoint(k);
ip.x = double(i) / Times;
ip.y = double(j) / Times;
ip.z = 0.0;
}
}
}
break;
@@ -1402,121 +1405,10 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
mfem_error("GeometryRefiner::RefineInterior(...)");
}
MFEM_ASSERT(ir != NULL, "Failed to construct the refined IntegrationRule.");
IntPts[Geom].Append(ir);
if (ir) { IntPts[Geom].Append(ir); }
return ir;
}
int GeometryRefiner::GetRefinementLevelFromPoints(Geometry::Type geom, int Npts)
{
switch (geom)
{
case Geometry::POINT:
{
return -1;
}
case Geometry::SEGMENT:
{
return Npts -1;
}
case Geometry::TRIANGLE:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+1)*(n+2)/2;
if (np == Npts) { return n; }
}
return -1;
}
case Geometry::SQUARE:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+1)*(n+1);
if (np == Npts) { return n; }
}
return -1;
}
case Geometry::CUBE:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+1)*(n+1)*(n+1);
if (np == Npts) { return n; }
}
return -1;
}
case Geometry::TETRAHEDRON:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+3)*(n+2)*(n+1)/6;
if (np == Npts) { return n; }
}
return -1;
}
case Geometry::PRISM:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+1)*(n+1)*(n+2)/2;
if (np == Npts) { return n; }
}
return -1;
}
default:
{
mfem_error("Non existing Geometry.");
}
}
return -1;
}
int GeometryRefiner::GetRefinementLevelFromElems(Geometry::Type geom, int Nels)
{
switch (geom)
{
case Geometry::POINT:
{
return -1;
}
case Geometry::SEGMENT:
{
return Nels;
}
case Geometry::TRIANGLE:
case Geometry::SQUARE:
{
for (int n = 0; (n < 15) && (n*n < Nels+1) ; n++)
{
if (n*n == Nels) { return n-1; }
}
return -1;
}
case Geometry::CUBE:
case Geometry::TETRAHEDRON:
case Geometry::PRISM:
{
for (int n = 0; (n < 15) && (n*n*n < Nels+1) ; n++)
{
if (n*n*n == Nels) { return n-1; }
}
return -1;
}
default:
{
mfem_error("Non existing Geometry.");
}
}
return -1;
}
GeometryRefiner GlobGeometryRefiner;
}
-6
View File
@@ -273,12 +273,6 @@ public:
/// @note This method always uses Quadrature1D::OpenUniform points.
const IntegrationRule *RefineInterior(Geometry::Type Geom, int Times);
/// Get the Refinement level based on number of points
virtual int GetRefinementLevelFromPoints(Geometry::Type Geom, int Npts);
/// Get the Refinement level based on number of elements
virtual int GetRefinementLevelFromElems(Geometry::Type geom, int Npts);
~GeometryRefiner();
};
+222 -567
View File
@@ -199,7 +199,8 @@ void GridFunction::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
if (f != fes) { Destroy(); }
fes = f;
v.UseDevice(true);
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
NewMemoryAndSize(Memory<double>(v.GetMemory(), v_offset, fes->GetVSize()),
fes->GetVSize(), true);
sequence = fes->GetSequence();
}
@@ -396,16 +397,8 @@ const
fes->DofsToVDofs(vdim-1, dofs);
Vector DofVal(dofs.Size()), LocVec;
const FiniteElement *fe = fes->GetFE(i);
if (fe->GetMapType() == FiniteElement::VALUE)
{
fe->CalcShape(ip, DofVal);
}
else
{
ElementTransformation *Tr = fes->GetElementTransformation(i);
Tr->SetIntPoint(&ip);
fe->CalcPhysShape(*Tr, DofVal);
}
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE, "invalid FE map type");
fe->CalcShape(ip, DofVal);
GetSubVector(dofs, LocVec);
return (DofVal * LocVec);
@@ -422,17 +415,10 @@ void GridFunction::GetVectorValue(int i, const IntegrationPoint &ip,
GetSubVector(vdofs, loc_data);
if (FElem->GetRangeType() == FiniteElement::SCALAR)
{
MFEM_ASSERT(FElem->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
Vector shape(dof);
if (FElem->GetMapType() == FiniteElement::VALUE)
{
FElem->CalcShape(ip, shape);
}
else
{
ElementTransformation *Tr = fes->GetElementTransformation(i);
Tr->SetIntPoint(&ip);
FElem->CalcPhysShape(*Tr, shape);
}
FElem->CalcShape(ip, shape);
int vdim = fes->GetVDim();
val.SetSize(vdim);
for (int k = 0; k < vdim; k++)
@@ -766,21 +752,19 @@ double GridFunction::GetValue(ElementTransformation &T,
IntegrationPoint fip;
be_to_bfe(FET->GetGeometryType(), o, ip, fip);
// Compute and set the point in element 1 from fip
FET->SetAllIntPoints(&fip);
FET->SetIntPoint(&fip);
ElementTransformation & T1 = FET->GetElement1Transformation();
return GetValue(T1, T1.GetIntPoint(), comp);
}
break;
}
break;
case ElementTransformation::BDR_FACE:
{
FaceElementTransformations * FET =
dynamic_cast<FaceElementTransformations *>(&T);
// Evaluate in neighboring element for both continuous and
// discontinuous fields (the integration point in T1 should have
// already been set).
// discontinuous fields.
ElementTransformation & T1 = FET->GetElement1Transformation();
return GetValue(T1, T1.GetIntPoint(), comp);
}
@@ -904,21 +888,19 @@ void GridFunction::GetVectorValue(ElementTransformation &T,
IntegrationPoint fip;
be_to_bfe(FET->GetGeometryType(), o, ip, fip);
// Compute and set the point in element 1 from fip
FET->SetAllIntPoints(&fip);
FET->SetIntPoint(&fip);
ElementTransformation & T1 = FET->GetElement1Transformation();
return GetVectorValue(T1, T1.GetIntPoint(), val);
}
break;
}
break;
case ElementTransformation::BDR_FACE:
{
FaceElementTransformations * FET =
dynamic_cast<FaceElementTransformations *>(&T);
// Evaluate in neighboring element for both continuous and
// discontinuous fields (the integration point in T1 should have
// already been set).
// discontinuous fields.
ElementTransformation & T1 = FET->GetElement1Transformation();
return GetVectorValue(T1, T1.GetIntPoint(), val);
}
@@ -1356,262 +1338,107 @@ void GridFunction::GetVectorGradientHat(
MultAtB(loc_data_mat, dshape, gh);
}
double GridFunction::GetDivergence(ElementTransformation &T) const
double GridFunction::GetDivergence(ElementTransformation &tr) const
{
switch (T.ElementType)
double div_v;
int elNo = tr.ElementNo;
const FiniteElement *FElem = fes->GetFE(elNo);
if (FElem->GetRangeType() == FiniteElement::SCALAR)
{
case ElementTransformation::ELEMENT:
MFEM_ASSERT(FElem->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
DenseMatrix grad_hat;
GetVectorGradientHat(tr, grad_hat);
const DenseMatrix &Jinv = tr.InverseJacobian();
div_v = 0.0;
for (int i = 0; i < Jinv.Width(); i++)
{
int elNo = T.ElementNo;
const FiniteElement *fe = fes->GetFE(elNo);
if (fe->GetRangeType() == FiniteElement::SCALAR)
for (int j = 0; j < Jinv.Height(); j++)
{
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
DenseMatrix grad_hat;
GetVectorGradientHat(T, grad_hat);
const DenseMatrix &Jinv = T.InverseJacobian();
double div_v = 0.0;
for (int i = 0; i < Jinv.Width(); i++)
{
for (int j = 0; j < Jinv.Height(); j++)
{
div_v += grad_hat(i, j) * Jinv(j, i);
}
}
return div_v;
div_v += grad_hat(i, j) * Jinv(j, i);
}
else
{
// Assuming RT-type space
Array<int> dofs;
fes->GetElementDofs(elNo, dofs);
Vector loc_data, divshape(fe->GetDof());
GetSubVector(dofs, loc_data);
fe->CalcDivShape(T.GetIntPoint(), divshape);
return (loc_data * divshape) / T.Weight();
}
}
break;
case ElementTransformation::BDR_ELEMENT:
{
// In order to properly capture the derivative of the normal component
// of the field (as well as the transverse divergence of the
// tangential compoents) we must evaluate it in the neighboring
// element.
FaceElementTransformations * FET =
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
// Boundary elements and Boundary Faces may have different
// orientations so adjust the integration point if necessary.
int o = 0;
if (fes->GetMesh()->Dimension() == 3)
{
int f;
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
}
IntegrationPoint fip;
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
// Compute and set the point in element 1 from fip
FET->SetAllIntPoints(&fip);
ElementTransformation & T1 = FET->GetElement1Transformation();
return GetDivergence(T1);
}
break;
case ElementTransformation::BDR_FACE:
{
// This must be a DG context so this dynamic cast must succeed.
FaceElementTransformations * FET =
dynamic_cast<FaceElementTransformations *>(&T);
// Evaluate in neighboring element (the integration point in T1 should
// have already been set).
ElementTransformation & T1 = FET->GetElement1Transformation();
return GetDivergence(T1);
}
break;
default:
{
MFEM_ABORT("GridFunction::GetDivergence: Unsupported element type \""
<< T.ElementType << "\"");
}
}
return 0.0; // never reached
else
{
// Assuming RT-type space
Array<int> dofs;
fes->GetElementDofs(elNo, dofs);
Vector loc_data, divshape(FElem->GetDof());
GetSubVector(dofs, loc_data);
FElem->CalcDivShape(tr.GetIntPoint(), divshape);
div_v = (loc_data * divshape) / tr.Weight();
}
return div_v;
}
void GridFunction::GetCurl(ElementTransformation &T, Vector &curl) const
void GridFunction::GetCurl(ElementTransformation &tr, Vector &curl) const
{
switch (T.ElementType)
int elNo = tr.ElementNo;
const FiniteElement *FElem = fes->GetFE(elNo);
if (FElem->GetRangeType() == FiniteElement::SCALAR)
{
case ElementTransformation::ELEMENT:
MFEM_ASSERT(FElem->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
DenseMatrix grad_hat;
GetVectorGradientHat(tr, grad_hat);
const DenseMatrix &Jinv = tr.InverseJacobian();
DenseMatrix grad(grad_hat.Height(), Jinv.Width()); // vdim x FElem->Dim
Mult(grad_hat, Jinv, grad);
MFEM_ASSERT(grad.Height() == grad.Width(), "");
if (grad.Height() == 3)
{
int elNo = T.ElementNo;
const FiniteElement *fe = fes->GetFE(elNo);
if (fe->GetRangeType() == FiniteElement::SCALAR)
{
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
DenseMatrix grad_hat;
GetVectorGradientHat(T, grad_hat);
const DenseMatrix &Jinv = T.InverseJacobian();
// Dimensions of grad are vdim x FElem->Dim
DenseMatrix grad(grad_hat.Height(), Jinv.Width());
Mult(grad_hat, Jinv, grad);
MFEM_ASSERT(grad.Height() == grad.Width(), "");
if (grad.Height() == 3)
{
curl.SetSize(3);
curl(0) = grad(2,1) - grad(1,2);
curl(1) = grad(0,2) - grad(2,0);
curl(2) = grad(1,0) - grad(0,1);
}
else if (grad.Height() == 2)
{
curl.SetSize(1);
curl(0) = grad(1,0) - grad(0,1);
}
}
else
{
// Assuming ND-type space
Array<int> dofs;
fes->GetElementDofs(elNo, dofs);
Vector loc_data;
GetSubVector(dofs, loc_data);
DenseMatrix curl_shape(fe->GetDof(), fe->GetDim() == 3 ? 3 : 1);
fe->CalcCurlShape(T.GetIntPoint(), curl_shape);
curl.SetSize(curl_shape.Width());
if (curl_shape.Width() == 3)
{
double curl_hat[3];
curl_shape.MultTranspose(loc_data, curl_hat);
T.Jacobian().Mult(curl_hat, curl);
}
else
{
curl_shape.MultTranspose(loc_data, curl);
}
curl /= T.Weight();
}
curl.SetSize(3);
curl(0) = grad(2,1) - grad(1,2);
curl(1) = grad(0,2) - grad(2,0);
curl(2) = grad(1,0) - grad(0,1);
}
break;
case ElementTransformation::BDR_ELEMENT:
else if (grad.Height() == 2)
{
// In order to capture the tangential components of the curl we
// must evaluate it in the neighboring element.
FaceElementTransformations * FET =
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
// Boundary elements and Boundary Faces may have different
// orientations so adjust the integration point if necessary.
int o = 0;
if (fes->GetMesh()->Dimension() == 3)
{
int f;
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
}
IntegrationPoint fip;
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
// Compute and set the point in element 1 from fip
FET->SetAllIntPoints(&fip);
ElementTransformation & T1 = FET->GetElement1Transformation();
GetCurl(T1, curl);
curl.SetSize(1);
curl(0) = grad(1,0) - grad(0,1);
}
break;
case ElementTransformation::BDR_FACE:
}
else
{
// Assuming ND-type space
Array<int> dofs;
fes->GetElementDofs(elNo, dofs);
Vector loc_data;
GetSubVector(dofs, loc_data);
DenseMatrix curl_shape(FElem->GetDof(), FElem->GetDim() == 3 ? 3 : 1);
FElem->CalcCurlShape(tr.GetIntPoint(), curl_shape);
curl.SetSize(curl_shape.Width());
if (curl_shape.Width() == 3)
{
// This must be a DG context so this dynamic cast must succeed.
FaceElementTransformations * FET =
dynamic_cast<FaceElementTransformations *>(&T);
// Evaluate in neighboring element (the integration point in T1 should
// have already been set).
ElementTransformation & T1 = FET->GetElement1Transformation();
GetCurl(T1, curl);
double curl_hat[3];
curl_shape.MultTranspose(loc_data, curl_hat);
tr.Jacobian().Mult(curl_hat, curl);
}
break;
default:
else
{
MFEM_ABORT("GridFunction::GetCurl: Unsupported element type \""
<< T.ElementType << "\"");
curl_shape.MultTranspose(loc_data, curl);
}
curl /= tr.Weight();
}
}
void GridFunction::GetGradient(ElementTransformation &T, Vector &grad) const
void GridFunction::GetGradient(ElementTransformation &tr, Vector &grad) const
{
switch (T.ElementType)
{
case ElementTransformation::ELEMENT:
{
const FiniteElement * fe = fes->GetFE(T.ElementNo);
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
int spaceDim = fes->GetMesh()->SpaceDimension();
int dim = fe->GetDim(), dof = fe->GetDof();
DenseMatrix dshape(dof, dim);
Vector lval, gh(dim);
Array<int> dofs;
int elNo = tr.ElementNo;
const FiniteElement *fe = fes->GetFE(elNo);
MFEM_ASSERT(fe->GetMapType() == FiniteElement::VALUE, "invalid FE map type");
int dim = fe->GetDim(), dof = fe->GetDof();
DenseMatrix dshape(dof, dim);
Vector lval, gh(dim);
Array<int> dofs;
grad.SetSize(spaceDim);
fes->GetElementDofs(T.ElementNo, dofs);
GetSubVector(dofs, lval);
fe->CalcDShape(T.GetIntPoint(), dshape);
dshape.MultTranspose(lval, gh);
T.InverseJacobian().MultTranspose(gh, grad);
}
break;
case ElementTransformation::BDR_ELEMENT:
{
// In order to properly capture the normal component of the gradient
// as well as its tangential components we must evaluate it in the
// neighboring element.
FaceElementTransformations * FET =
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
// Boundary elements and Boundary Faces may have different
// orientations so adjust the integration point if necessary.
int o = 0;
if (fes->GetMesh()->Dimension() == 3)
{
int f;
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
}
IntegrationPoint fip;
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
// Compute and set the point in element 1 from fip
FET->SetAllIntPoints(&fip);
ElementTransformation & T1 = FET->GetElement1Transformation();
GetGradient(T1, grad);
}
break;
case ElementTransformation::BDR_FACE:
{
// This must be a DG context so this dynamic cast must succeed.
FaceElementTransformations * FET =
dynamic_cast<FaceElementTransformations *>(&T);
// Evaluate in neighboring element (the integration point in T1 should
// have already been set).
ElementTransformation & T1 = FET->GetElement1Transformation();
GetGradient(T1, grad);
}
break;
default:
{
MFEM_ABORT("GridFunction::GetGradient: Unsupported element type \""
<< T.ElementType << "\"");
}
}
grad.SetSize(dim);
fes->GetElementDofs(elNo, dofs);
GetSubVector(dofs, lval);
fe->CalcDShape(tr.GetIntPoint(), dshape);
dshape.MultTranspose(lval, gh);
tr.InverseJacobian().MultTranspose(gh, grad);
}
void GridFunction::GetGradients(ElementTransformation &tr,
@@ -1640,65 +1467,15 @@ void GridFunction::GetGradients(ElementTransformation &tr,
}
void GridFunction::GetVectorGradient(
ElementTransformation &T, DenseMatrix &grad) const
ElementTransformation &tr, DenseMatrix &grad) const
{
switch (T.ElementType)
{
case ElementTransformation::ELEMENT:
{
MFEM_ASSERT(fes->GetFE(T.ElementNo)->GetMapType() ==
FiniteElement::VALUE, "invalid FE map type");
DenseMatrix grad_hat;
GetVectorGradientHat(T, grad_hat);
const DenseMatrix &Jinv = T.InverseJacobian();
grad.SetSize(grad_hat.Height(), Jinv.Width());
Mult(grad_hat, Jinv, grad);
}
break;
case ElementTransformation::BDR_ELEMENT:
{
// In order to capture the normal component of the gradient we
// must evaluate it in the neighboring element.
FaceElementTransformations * FET =
fes->GetMesh()->GetBdrFaceTransformations(T.ElementNo);
// Boundary elements and Boundary Faces may have different
// orientations so adjust the integration point if necessary.
int o = 0;
if (fes->GetMesh()->Dimension() == 3)
{
int f;
fes->GetMesh()->GetBdrElementFace(T.ElementNo, &f, &o);
}
IntegrationPoint fip;
be_to_bfe(FET->GetGeometryType(), o, T.GetIntPoint(), fip);
// Compute and set the point in element 1 from fip
FET->SetAllIntPoints(&fip);
ElementTransformation & T1 = FET->GetElement1Transformation();
GetVectorGradient(T1, grad);
}
break;
case ElementTransformation::BDR_FACE:
{
// This must be a DG context so this dynamic cast must succeed.
FaceElementTransformations * FET =
dynamic_cast<FaceElementTransformations *>(&T);
// Evaluate in neighboring element (the integration point in T1 should
// have already been set).
ElementTransformation & T1 = FET->GetElement1Transformation();
GetVectorGradient(T1, grad);
}
break;
default:
{
MFEM_ABORT("GridFunction::GetVectorGradient: "
"Unsupported element type \"" << T.ElementType << "\"");
}
}
MFEM_ASSERT(fes->GetFE(tr.ElementNo)->GetMapType() == FiniteElement::VALUE,
"invalid FE map type");
DenseMatrix grad_hat;
GetVectorGradientHat(tr, grad_hat);
const DenseMatrix &Jinv = tr.InverseJacobian();
grad.SetSize(grad_hat.Height(), Jinv.Width());
Mult(grad_hat, Jinv, grad);
}
void GridFunction::GetElementAverages(GridFunction &avgs) const
@@ -1833,19 +1610,6 @@ void GridFunction::ImposeBounds(int i, const Vector &weights,
ImposeBounds(i, weights, minv, maxv);
}
void GridFunction::RestrictConforming()
{
const SparseMatrix *R = fes->GetRestrictionMatrix();
const Operator *P = fes->GetProlongationMatrix();
if (P && R)
{
Vector tmp(R->Height());
R->Mult(*this, tmp);
P->Mult(tmp, *this);
}
}
void GridFunction::GetNodalValues(Vector &nval, int vdim) const
{
int i, j;
@@ -2614,7 +2378,11 @@ double GridFunction::ComputeL2Error(
}
}
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
if (error < 0.0)
{
return -sqrt(-error);
}
return sqrt(error);
}
double GridFunction::ComputeL2Error(
@@ -2655,199 +2423,94 @@ double GridFunction::ComputeL2Error(
}
}
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
}
double GridFunction::ComputeGradError(VectorCoefficient *exgrad,
const IntegrationRule *irs[]) const
{
double error = 0.0;
const FiniteElement *fe;
ElementTransformation *Tr;
Array<int> dofs;
Vector grad;
int intorder;
int dim = fes->GetMesh()->SpaceDimension();
Vector vec(dim);
for (int i = 0; i < fes->GetNE(); i++)
if (error < 0.0)
{
fe = fes->GetFE(i);
Tr = fes->GetElementTransformation(i);
intorder = 2*fe->GetOrder() + 3; // <--------
const IntegrationRule *ir;
if (irs)
{
ir = irs[fe->GetGeomType()];
}
else
{
ir = &(IntRules.Get(fe->GetGeomType(), intorder));
}
fes->GetElementDofs(i, dofs);
for (int j = 0; j < ir->GetNPoints(); j++)
{
const IntegrationPoint &ip = ir->IntPoint(j);
Tr->SetIntPoint(&ip);
GetGradient(*Tr,grad);
exgrad->Eval(vec,*Tr,ip);
vec-=grad;
error += ip.weight * Tr->Weight() * (vec * vec);
}
return -sqrt(-error);
}
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
return sqrt(error);
}
double GridFunction::ComputeCurlError(VectorCoefficient *excurl,
const IntegrationRule *irs[]) const
double GridFunction::ComputeH1Error(
Coefficient *exsol, VectorCoefficient *exgrad,
Coefficient *ell_coeff, double Nu, int norm_type) const
{
double error = 0.0;
const FiniteElement *fe;
ElementTransformation *Tr;
Array<int> dofs;
Vector curl;
int intorder;
int dim = fes->GetMesh()->SpaceDimension();
int n = (dim == 3) ? dim : 1;
Vector vec(n);
for (int i = 0; i < fes->GetNE(); i++)
{
fe = fes->GetFE(i);
Tr = fes->GetElementTransformation(i);
intorder = 2*fe->GetOrder() + 3;
const IntegrationRule *ir;
if (irs)
{
ir = irs[fe->GetGeomType()];
}
else
{
ir = &(IntRules.Get(fe->GetGeomType(), intorder));
}
fes->GetElementDofs(i, dofs);
for (int j = 0; j < ir->GetNPoints(); j++)
{
const IntegrationPoint &ip = ir->IntPoint(j);
Tr->SetIntPoint(&ip);
GetCurl(*Tr,curl);
excurl->Eval(vec,*Tr,ip);
vec-=curl;
error += ip.weight * Tr->Weight() * ( vec * vec );
}
}
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
}
double GridFunction::ComputeDivError(
Coefficient *exdiv, const IntegrationRule *irs[]) const
{
double error = 0.0, a;
const FiniteElement *fe;
ElementTransformation *Tr;
Array<int> dofs;
int intorder;
for (int i = 0; i < fes->GetNE(); i++)
{
fe = fes->GetFE(i);
Tr = fes->GetElementTransformation(i);
intorder = 2*fe->GetOrder() + 3;
const IntegrationRule *ir;
if (irs)
{
ir = irs[fe->GetGeomType()];
}
else
{
ir = &(IntRules.Get(fe->GetGeomType(), intorder));
}
fes->GetElementDofs(i, dofs);
for (int j = 0; j < ir->GetNPoints(); j++)
{
const IntegrationPoint &ip = ir->IntPoint(j);
Tr->SetIntPoint (&ip);
a = GetDivergence(*Tr) - exdiv->Eval(*Tr, ip);
error += ip.weight * Tr->Weight() * a * a;
}
}
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
}
double GridFunction::ComputeDGFaceJumpError(Coefficient *exsol,
Coefficient *ell_coeff, double Nu,
const IntegrationRule *irs[]) const
{
int fdof, dim, intorder, k;
// assuming vdim is 1
int i, fdof, dim, intorder, j, k;
Mesh *mesh;
const FiniteElement *fe;
ElementTransformation *transf;
FaceElementTransformations *face_elem_transf;
Vector shape, el_dofs, err_val, ell_coeff_val;
Vector e_grad, a_grad, shape, el_dofs, err_val, ell_coeff_val;
DenseMatrix dshape, dshapet, Jinv;
Array<int> vdofs;
IntegrationPoint eip;
double error = 0.0;
mesh = fes->GetMesh();
dim = mesh->Dimension();
e_grad.SetSize(dim);
a_grad.SetSize(dim);
Jinv.SetSize(dim);
for (int i = 0; i < mesh->GetNumFaces(); i++)
{
face_elem_transf = mesh->GetFaceElementTransformations(i, 5);
int i1 = face_elem_transf->Elem1No;
int i2 = face_elem_transf->Elem2No;
intorder = fes->GetFE(i1)->GetOrder();
if (i2 >= 0)
if ( (k = fes->GetFE(i2)->GetOrder()) > intorder )
{
intorder = k;
}
intorder = 2 * intorder; // <-------------
const IntegrationRule *ir;
if (irs)
if (norm_type & 1)
for (i = 0; i < mesh->GetNE(); i++)
{
ir = irs[face_elem_transf->GetGeometryType()];
}
else
{
ir = &(IntRules.Get(face_elem_transf->GetGeometryType(), intorder));
}
err_val.SetSize(ir->GetNPoints());
ell_coeff_val.SetSize(ir->GetNPoints());
// side 1
transf = face_elem_transf->Elem1;
fe = fes->GetFE(i1);
fdof = fe->GetDof();
fes->GetElementVDofs(i1, vdofs);
shape.SetSize(fdof);
el_dofs.SetSize(fdof);
for (k = 0; k < fdof; k++)
if (vdofs[k] >= 0)
{
el_dofs(k) = (*this)(vdofs[k]);
}
else
{
el_dofs(k) = - (*this)(-1-vdofs[k]);
}
for (int j = 0; j < ir->GetNPoints(); j++)
{
face_elem_transf->Loc1.Transform(ir->IntPoint(j), eip);
fe->CalcShape(eip, shape);
transf->SetIntPoint(&eip);
ell_coeff_val(j) = ell_coeff->Eval(*transf, eip);
err_val(j) = exsol->Eval(*transf, eip) - (shape * el_dofs);
}
if (i2 >= 0)
{
// side 2
face_elem_transf = mesh->GetFaceElementTransformations(i, 10);
transf = face_elem_transf->Elem2;
fe = fes->GetFE(i2);
fe = fes->GetFE(i);
fdof = fe->GetDof();
fes->GetElementVDofs(i2, vdofs);
transf = mesh->GetElementTransformation(i);
el_dofs.SetSize(fdof);
dshape.SetSize(fdof, dim);
dshapet.SetSize(fdof, dim);
intorder = 2 * fe->GetOrder(); // <----------
const IntegrationRule &ir = IntRules.Get(fe->GetGeomType(), intorder);
fes->GetElementVDofs(i, vdofs);
for (k = 0; k < fdof; k++)
if (vdofs[k] >= 0)
{
el_dofs(k) = (*this)(vdofs[k]);
}
else
{
el_dofs(k) = - (*this)(-1-vdofs[k]);
}
for (j = 0; j < ir.GetNPoints(); j++)
{
const IntegrationPoint &ip = ir.IntPoint(j);
fe->CalcDShape(ip, dshape);
transf->SetIntPoint(&ip);
exgrad->Eval(e_grad, *transf, ip);
CalcInverse(transf->Jacobian(), Jinv);
Mult(dshape, Jinv, dshapet);
dshapet.MultTranspose(el_dofs, a_grad);
e_grad -= a_grad;
error += (ip.weight * transf->Weight() *
ell_coeff->Eval(*transf, ip) *
(e_grad * e_grad));
}
}
if (norm_type & 2)
for (i = 0; i < mesh->GetNFaces(); i++)
{
face_elem_transf = mesh->GetFaceElementTransformations(i, 5);
int i1 = face_elem_transf->Elem1No;
int i2 = face_elem_transf->Elem2No;
intorder = fes->GetFE(i1)->GetOrder();
if (i2 >= 0)
if ( (k = fes->GetFE(i2)->GetOrder()) > intorder )
{
intorder = k;
}
intorder = 2 * intorder; // <-------------
const IntegrationRule &ir =
IntRules.Get(face_elem_transf->GetGeometryType(), intorder);
err_val.SetSize(ir.GetNPoints());
ell_coeff_val.SetSize(ir.GetNPoints());
// side 1
transf = face_elem_transf->Elem1;
fe = fes->GetFE(i1);
fdof = fe->GetDof();
fes->GetElementVDofs(i1, vdofs);
shape.SetSize(fdof);
el_dofs.SetSize(fdof);
for (k = 0; k < fdof; k++)
@@ -2859,69 +2522,60 @@ double GridFunction::ComputeDGFaceJumpError(Coefficient *exsol,
{
el_dofs(k) = - (*this)(-1-vdofs[k]);
}
for (int j = 0; j < ir->GetNPoints(); j++)
for (j = 0; j < ir.GetNPoints(); j++)
{
face_elem_transf->Loc2.Transform(ir->IntPoint(j), eip);
face_elem_transf->Loc1.Transform(ir.IntPoint(j), eip);
fe->CalcShape(eip, shape);
transf->SetIntPoint(&eip);
ell_coeff_val(j) += ell_coeff->Eval(*transf, eip);
ell_coeff_val(j) *= 0.5;
err_val(j) -= (exsol->Eval(*transf, eip) - (shape * el_dofs));
ell_coeff_val(j) = ell_coeff->Eval(*transf, eip);
err_val(j) = exsol->Eval(*transf, eip) - (shape * el_dofs);
}
if (i2 >= 0)
{
// side 2
face_elem_transf = mesh->GetFaceElementTransformations(i, 10);
transf = face_elem_transf->Elem2;
fe = fes->GetFE(i2);
fdof = fe->GetDof();
fes->GetElementVDofs(i2, vdofs);
shape.SetSize(fdof);
el_dofs.SetSize(fdof);
for (k = 0; k < fdof; k++)
if (vdofs[k] >= 0)
{
el_dofs(k) = (*this)(vdofs[k]);
}
else
{
el_dofs(k) = - (*this)(-1-vdofs[k]);
}
for (j = 0; j < ir.GetNPoints(); j++)
{
face_elem_transf->Loc2.Transform(ir.IntPoint(j), eip);
fe->CalcShape(eip, shape);
transf->SetIntPoint(&eip);
ell_coeff_val(j) += ell_coeff->Eval(*transf, eip);
ell_coeff_val(j) *= 0.5;
err_val(j) -= (exsol->Eval(*transf, eip) - (shape * el_dofs));
}
}
face_elem_transf = mesh->GetFaceElementTransformations(i, 16);
transf = face_elem_transf;
for (j = 0; j < ir.GetNPoints(); j++)
{
const IntegrationPoint &ip = ir.IntPoint(j);
transf->SetIntPoint(&ip);
error += (ip.weight * Nu * ell_coeff_val(j) *
pow(transf->Weight(), 1.0-1.0/(dim-1)) *
err_val(j) * err_val(j));
}
}
face_elem_transf = mesh->GetFaceElementTransformations(i, 16);
transf = face_elem_transf;
for (int j = 0; j < ir->GetNPoints(); j++)
{
const IntegrationPoint &ip = ir->IntPoint(j);
transf->SetIntPoint(&ip);
error += (ip.weight * Nu * ell_coeff_val(j) *
pow(transf->Weight(), 1.0-1.0/(dim-1)) *
err_val(j) * err_val(j));
}
if (error < 0.0)
{
return -sqrt(-error);
}
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
}
double GridFunction::ComputeH1Error(Coefficient *exsol,
VectorCoefficient *exgrad,
Coefficient *ell_coef, double Nu,
int norm_type) const
{
double error1 = 0.0;
double error2 = 0.0;
if (norm_type & 1) { error1 = GridFunction::ComputeGradError(exgrad); }
if (norm_type & 2) { error2 = GridFunction::ComputeDGFaceJumpError(exsol,ell_coef,Nu); }
return sqrt(error1 * error1 + error2 * error2);
}
double GridFunction::ComputeH1Error(Coefficient *exsol,
VectorCoefficient *exgrad,
const IntegrationRule *irs[]) const
{
double L2error = GridFunction::ComputeLpError(2.0,*exsol,NULL,irs);
double GradError = ComputeGradError(exgrad,irs);
return sqrt(L2error*L2error + GradError*GradError);
}
double GridFunction::ComputeHDivError(VectorCoefficient *exsol,
Coefficient *exdiv,
const IntegrationRule *irs[]) const
{
double L2error = GridFunction::ComputeLpError(2.0,*exsol,NULL,NULL,irs);
double DivError = ComputeDivError(exdiv,irs);
return sqrt(L2error*L2error + DivError*DivError);
}
double GridFunction::ComputeHCurlError(VectorCoefficient *exsol,
VectorCoefficient *excurl,
const IntegrationRule *irs[]) const
{
double L2error = GridFunction::ComputeLpError(2.0,*exsol,NULL,NULL,irs);
double CurlError = ComputeCurlError(excurl,irs);
return sqrt(L2error*L2error + CurlError*CurlError);
return sqrt(error);
}
double GridFunction::ComputeMaxError(
@@ -2977,6 +2631,7 @@ double GridFunction::ComputeMaxError(
}
}
}
return error;
}
+7 -55
View File
@@ -105,7 +105,7 @@ public:
have the same size.
@note Defining this method overwrites the implicitly defined copy
assignment operator. */
assignemnt operator. */
GridFunction &operator=(const GridFunction &rhs)
{ return operator=((const Vector &)rhs); }
@@ -162,8 +162,7 @@ public:
int vdim = 1) const;
/** Return a vector value from within the given element. */
virtual void GetVectorValue(int i, const IntegrationPoint &ip,
Vector &val) const;
void GetVectorValue(int i, const IntegrationPoint &ip, Vector &val) const;
///@}
/** @name Element Index Get Values Methods
@@ -209,14 +208,13 @@ public:
///@{
/** Return a scalar value from within the element indicated by the
ElementTransformation Object. */
virtual double GetValue(ElementTransformation &T, const IntegrationPoint &ip,
int comp = 0, Vector *tr = NULL) const;
double GetValue(ElementTransformation &T, const IntegrationPoint &ip,
int comp = 0, Vector *tr = NULL) const;
/** Return a vector value from within the element indicated by the
ElementTransformation Object. */
virtual void GetVectorValue(ElementTransformation &T,
const IntegrationPoint &ip,
Vector &val, Vector *tr = NULL) const;
void GetVectorValue(ElementTransformation &T, const IntegrationPoint &ip,
Vector &val, Vector *tr = NULL) const;
///@}
/** @name ElementTransformation Get Values Methods
@@ -334,11 +332,6 @@ public:
void ImposeBounds(int i, const Vector &weights,
double _min = 0.0, double _max = infinity());
/** On a non-conforming mesh, make sure the function lies in the conforming
space by multiplying with R and then with P, the conforming restriction
and prolongation matrices of the space, respectively. */
void RestrictConforming();
/** @brief Project the @a src GridFunction to @a this GridFunction, both of
which must be on the same mesh. */
/** The current implementation assumes that all elements use the same
@@ -427,7 +420,6 @@ public:
virtual void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
Array<int> &bdr_attr);
virtual double ComputeL2Error(Coefficient &exsol,
const IntegrationRule *irs[] = NULL) const
{ return ComputeLpError(2.0, exsol, NULL, irs); }
@@ -439,50 +431,10 @@ public:
const IntegrationRule *irs[] = NULL,
Array<int> *elems = NULL) const;
/// Returns ||grad u_ex - grad u_h||_L2 for H1 or L2 elements
virtual double ComputeGradError(VectorCoefficient *exgrad,
const IntegrationRule *irs[] = NULL) const;
/// Returns ||curl u_ex - curl u_h||_L2 for ND elements
virtual double ComputeCurlError(VectorCoefficient *excurl,
const IntegrationRule *irs[] = NULL) const;
/// Returns ||div u_ex - div u_h||_L2 for RT elements
virtual double ComputeDivError(Coefficient *exdiv,
const IntegrationRule *irs[] = NULL) const;
/// Returns the Face Jumps error for L2 elements
virtual double ComputeDGFaceJumpError(Coefficient *exsol,
Coefficient *ell_coeff,
double Nu,
const IntegrationRule *irs[] = NULL)
const;
/** This method is kept for backward compatibility.
Returns either the H1-seminorm, or the DG face jumps error, or both
depending on norm_type = 1, 2, 3. Additional arguments for the DG face
jumps norm: ell_coeff: mesh-depended coefficient (weight) Nu: scalar
constant weight */
virtual double ComputeH1Error(Coefficient *exsol, VectorCoefficient *exgrad,
Coefficient *ell_coef, double Nu,
int norm_type) const;
/// Returns the error measured in H1-norm for H1 elements or in "broken"
/// H1-norm for L2 elements
virtual double ComputeH1Error(Coefficient *exsol, VectorCoefficient *exgrad,
const IntegrationRule *irs[] = NULL) const;
/// Returns the error measured in H(div)-norm for RT elements
virtual double ComputeHDivError(VectorCoefficient *exsol,
Coefficient *exdiv,
const IntegrationRule *irs[] = NULL) const;
/// Returns the error measured in H(curl)-norm for ND elements
virtual double ComputeHCurlError(VectorCoefficient *exsol,
VectorCoefficient *excurl,
const IntegrationRule *irs[] = NULL) const;
virtual double ComputeMaxError(Coefficient &exsol,
const IntegrationRule *irs[] = NULL) const
{
@@ -760,7 +712,7 @@ public:
the same size.
@note Defining this method overwrites the implicitly defined copy
assignment operator. */
assignemnt operator. */
QuadratureFunction &operator=(const QuadratureFunction &v);
/// Get the IntegrationRule associated with mesh element @a idx.
+85 -403
View File
@@ -29,13 +29,10 @@ namespace mfem
{
FindPointsGSLIB::FindPointsGSLIB()
: mesh(NULL), meshsplit(NULL), ir_simplex(NULL),
fdata2D(NULL), fdata3D(NULL), cr(NULL), gsl_comm(NULL),
dim(-1), points_cnt(0), setupflag(false), default_interp_value(0),
avgtype(AvgType::ARITHMETIC)
: mesh(NULL), ir_simplex(NULL), fdata2D(NULL), fdata3D(NULL),
dim(-1), gsl_mesh(), gsl_ref(), gsl_dist(), setupflag(false)
{
gsl_comm = new comm;
cr = new crystal;
#ifdef MFEM_USE_MPI
int initialized;
MPI_Initialized(&initialized);
@@ -50,20 +47,15 @@ FindPointsGSLIB::FindPointsGSLIB()
FindPointsGSLIB::~FindPointsGSLIB()
{
delete gsl_comm;
delete cr;
delete ir_simplex;
delete meshsplit;
}
#ifdef MFEM_USE_MPI
FindPointsGSLIB::FindPointsGSLIB(MPI_Comm _comm)
: mesh(NULL), meshsplit(NULL), ir_simplex(NULL),
fdata2D(NULL), fdata3D(NULL), cr(NULL), gsl_comm(NULL),
dim(-1), points_cnt(0), setupflag(false), default_interp_value(0),
avgtype(AvgType::ARITHMETIC)
: mesh(NULL), ir_simplex(NULL), fdata2D(NULL), fdata3D(NULL),
dim(-1), gsl_mesh(), gsl_ref(), gsl_dist(), setupflag(false)
{
gsl_comm = new comm;
cr = new crystal;
comm_init(gsl_comm, _comm);
}
#endif
@@ -78,7 +70,6 @@ void FindPointsGSLIB::Setup(Mesh &m, const double bb_t, const double newt_tol,
// call FreeData if FindPointsGSLIB::Setup has been called already
if (setupflag) { FreeData(); }
crystal_init(cr, gsl_comm);
mesh = &m;
dim = mesh->Dimension();
const FiniteElement *fe = mesh->GetNodalFESpace()->GetFE(0);
@@ -122,16 +113,14 @@ void FindPointsGSLIB::Setup(Mesh &m, const double bb_t, const double newt_tol,
setupflag = true;
}
void FindPointsGSLIB::FindPoints(const Vector &point_pos)
void FindPointsGSLIB::FindPoints(const Vector &point_pos,
Array<unsigned int> &codes,
Array<unsigned int> &proc_ids,
Array<unsigned int> &elem_ids,
Vector &ref_pos, Vector &dist)
{
MFEM_VERIFY(setupflag, "Use FindPointsGSLIB::Setup before finding points.");
points_cnt = point_pos.Size() / dim;
gsl_code.SetSize(points_cnt);
gsl_proc.SetSize(points_cnt);
gsl_elem.SetSize(points_cnt);
gsl_ref.SetSize(points_cnt * dim);
gsl_dist.SetSize(points_cnt);
const int points_cnt = point_pos.Size() / dim;
if (dim == 2)
{
const double *xv_base[2];
@@ -140,11 +129,11 @@ void FindPointsGSLIB::FindPoints(const Vector &point_pos)
unsigned xv_stride[2];
xv_stride[0] = sizeof(double);
xv_stride[1] = sizeof(double);
findpts_2(gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
gsl_ref.GetData(), sizeof(double) * dim,
gsl_dist.GetData(), sizeof(double),
findpts_2(codes.GetData(), sizeof(unsigned int),
proc_ids.GetData(), sizeof(unsigned int),
elem_ids.GetData(), sizeof(unsigned int),
ref_pos.GetData(), sizeof(double) * dim,
dist.GetData(), sizeof(double),
xv_base, xv_stride, points_cnt, fdata2D);
}
else
@@ -157,27 +146,25 @@ void FindPointsGSLIB::FindPoints(const Vector &point_pos)
xv_stride[0] = sizeof(double);
xv_stride[1] = sizeof(double);
xv_stride[2] = sizeof(double);
findpts_3(gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
gsl_ref.GetData(), sizeof(double) * dim,
gsl_dist.GetData(), sizeof(double),
findpts_3(codes.GetData(), sizeof(unsigned int),
proc_ids.GetData(), sizeof(unsigned int),
elem_ids.GetData(), sizeof(unsigned int),
ref_pos.GetData(), sizeof(double) * dim,
dist.GetData(), sizeof(double),
xv_base, xv_stride, points_cnt, fdata3D);
}
}
// Set the element number and reference position to 0 for points not found
for (int i = 0; i < points_cnt; i++)
{
if (gsl_code[i] == 2)
{
gsl_elem[i] = 0;
for (int d = 0; d < dim; d++) { gsl_ref(i*dim + d) = -1.; }
}
}
void FindPointsGSLIB::FindPoints(const Vector &point_pos)
{
const int points_cnt = point_pos.Size() / dim;
gsl_code.SetSize(points_cnt);
gsl_proc.SetSize(points_cnt);
gsl_elem.SetSize(points_cnt);
gsl_ref.SetSize(points_cnt * dim);
gsl_dist.SetSize(points_cnt);
// Map element number for simplices, and ref_pos from [-1,1] to [0,1] for
// both simplices and quads.
MapRefPosAndElemIndices();
FindPoints(point_pos, gsl_code, gsl_proc, gsl_elem, gsl_ref, gsl_dist);
}
void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
@@ -191,24 +178,71 @@ void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
FindPoints(point_pos);
}
void FindPointsGSLIB::Interpolate(Array<unsigned int> &codes,
Array<unsigned int> &proc_ids,
Array<unsigned int> &elem_ids,
Vector &ref_pos, const GridFunction &field_in,
Vector &field_out)
{
FiniteElementSpace ind_fes(mesh, field_in.FESpace()->FEColl());
GridFunction field_in_scalar(&ind_fes);
Vector node_vals;
const int ncomp = field_in.FESpace()->GetVDim(),
points_fld = field_in.Size() / ncomp,
points_cnt = codes.Size();
for (int i = 0; i < ncomp; i++)
{
const int dataptrin = i*points_fld,
dataptrout = i*points_cnt;
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
GetNodeValues(field_in_scalar, node_vals);
if (dim==2)
{
findpts_eval_2(field_out.GetData()+dataptrout, sizeof(double),
codes.GetData(), sizeof(unsigned int),
proc_ids.GetData(), sizeof(unsigned int),
elem_ids.GetData(), sizeof(unsigned int),
ref_pos.GetData(), sizeof(double) * dim,
points_cnt, node_vals.GetData(), fdata2D);
}
else
{
findpts_eval_3(field_out.GetData()+dataptrout, sizeof(double),
codes.GetData(), sizeof(unsigned int),
proc_ids.GetData(), sizeof(unsigned int),
elem_ids.GetData(), sizeof(unsigned int),
ref_pos.GetData(), sizeof(double) * dim,
points_cnt, node_vals.GetData(), fdata3D);
}
}
}
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out)
{
Interpolate(gsl_code, gsl_proc, gsl_elem, gsl_ref, field_in, field_out);
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in, Vector &field_out)
{
FindPoints(point_pos);
Interpolate(field_in, field_out);
Interpolate(gsl_code, gsl_proc, gsl_elem, gsl_ref, field_in, field_out);
}
void FindPointsGSLIB::Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out)
{
FindPoints(m, point_pos);
Interpolate(field_in, field_out);
Interpolate(gsl_code, gsl_proc, gsl_elem, gsl_ref, field_in, field_out);
}
void FindPointsGSLIB::FreeData()
{
if (!setupflag) { return; }
crystal_free(cr);
if (dim == 2)
{
findpts_free_2(fdata2D);
@@ -217,13 +251,13 @@ void FindPointsGSLIB::FreeData()
{
findpts_free_3(fdata3D);
}
setupflag = false;
gsl_code.DeleteAll();
gsl_proc.DeleteAll();
gsl_elem.DeleteAll();
gsl_mesh.Destroy();
gsl_ref.Destroy();
gsl_dist.Destroy();
setupflag = false;
}
void FindPointsGSLIB::GetNodeValues(const GridFunction &gf_in,
@@ -323,8 +357,9 @@ void FindPointsGSLIB::GetSimplexNodalCoordinates()
const FiniteElement *fe = mesh->GetNodalFESpace()->GetFE(0);
const Geometry::Type gt = fe->GetGeomType();
const GridFunction *nodes = mesh->GetNodes();
Mesh *meshsplit = NULL;
const int NE = mesh->GetNE();
int NEsplit = 0;
int NEsplit = -1;
// Split the reference element into a reference submesh of quads or hexes.
if (gt == Geometry::TRIANGLE)
@@ -480,361 +515,8 @@ void FindPointsGSLIB::GetSimplexNodalCoordinates()
pt_id++;
}
}
}
void FindPointsGSLIB::MapRefPosAndElemIndices()
{
gsl_mfem_ref = gsl_ref;
gsl_mfem_elem = gsl_elem;
const FiniteElement *fe = mesh->GetNodalFESpace()->GetFE(0);
const Geometry::Type gt = fe->GetGeomType();
int NEsplit = 0;
gsl_mfem_ref -= -1.; // map [-1, 1] to
gsl_mfem_ref *= 0.5; // [0, 1]
if (gt == Geometry::SQUARE || gt == Geometry::CUBE) { return; }
H1_FECollection feclin(1, dim);
FiniteElementSpace nodal_fes_lin(meshsplit, &feclin, dim);
GridFunction gf_lin(&nodal_fes_lin);
if (gt == Geometry::TRIANGLE)
{
const double quad_v[7][2] =
{
{0, 0}, {0.5, 0}, {1, 0}, {0, 0.5},
{1./3., 1./3.}, {0.5, 0.5}, {0, 1}
};
for (int k = 0; k < dim; k++)
{
for (int j = 0; j < gf_lin.Size()/dim; j++)
{
gf_lin(j+k*gf_lin.Size()/dim) = quad_v[j][k];
}
}
NEsplit = 3;
}
else if (gt == Geometry::TETRAHEDRON)
{
const double hex_v[15][3] =
{
{0, 0, 0.}, {1, 0., 0.}, {0., 1., 0.}, {0, 0., 1.},
{0.5, 0., 0.}, {0.5, 0.5, 0.}, {0., 0.5, 0.},
{0., 0., 0.5}, {0.5, 0., 0.5}, {0., 0.5, 0.5},
{1./3., 0., 1./3.}, {1./3., 1./3., 1./3.}, {0, 1./3., 1./3.},
{1./3., 1./3., 0}, {0.25, 0.25, 0.25}
};
for (int k = 0; k < dim; k++)
{
for (int j = 0; j < gf_lin.Size()/dim; j++)
{
gf_lin(j+k*gf_lin.Size()/dim) = hex_v[j][k];
}
}
NEsplit = 4;
}
else if (gt == Geometry::PRISM)
{
const double hex_v[14][3] =
{
{0, 0, 0}, {0.5, 0, 0}, {1, 0, 0}, {0, 0.5, 0},
{1./3., 1./3., 0}, {0.5, 0.5, 0}, {0, 1, 0},
{0, 0, 1}, {0.5, 0, 1}, {1, 0, 1}, {0, 0.5, 1},
{1./3., 1./3., 1}, {0.5, 0.5, 1}, {0, 1, 1}
};
for (int k = 0; k < dim; k++)
{
for (int j = 0; j < gf_lin.Size()/dim; j++)
{
gf_lin(j+k*gf_lin.Size()/dim) = hex_v[j][k];
}
}
NEsplit = 3;
}
else
{
MFEM_ABORT("Element type not currently supported.");
}
// Simplices are split into quads/hexes for GSLIB. For MFEM, we need to find
// the original element number and map the rst from micro to macro element.
for (int i = 0; i < points_cnt; i++)
{
if (gsl_code[i] == 2) { continue; }
int local_elem = gsl_elem[i]%NEsplit;
gsl_mfem_elem[i] = (gsl_elem[i] - local_elem)/NEsplit; // macro element number
IntegrationPoint ip;
Vector mfem_ref(gsl_mfem_ref.GetData()+i*dim, dim);
ip.Set2(mfem_ref.GetData());
if (dim == 3) { ip.z = mfem_ref(2); }
gf_lin.GetVectorValue(local_elem, ip, mfem_ref); // map to rst of macro element
}
}
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out)
{
const int gf_order = field_in.FESpace()->GetFE(0)->GetOrder(),
mesh_order = mesh->GetNodalFESpace()->GetFE(0)->GetOrder();
const FiniteElementCollection *fec_in = field_in.FESpace()->FEColl();
const H1_FECollection *fec_h1 = dynamic_cast<const H1_FECollection *>(fec_in);
const L2_FECollection *fec_l2 = dynamic_cast<const L2_FECollection *>(fec_in);
if (fec_h1 && gf_order == mesh_order &&
fec_h1->GetBasisType() == BasisType::GaussLobatto)
{
InterpolateH1(field_in, field_out);
return;
}
else
{
InterpolateGeneral(field_in, field_out);
if (!fec_l2 || avgtype == AvgType::NONE) { return; }
}
// For points on element borders, project the L2 GridFunction to H1 and
// re-interpolate.
if (fec_l2)
{
Array<int> indl2;
for (int i = 0; i < points_cnt; i++)
{
if (gsl_code[i] == 1) { indl2.Append(i); }
}
if (indl2.Size() == 0) { return; } // no points on element borders
Vector field_out_l2(field_out.Size());
VectorGridFunctionCoefficient field_in_dg(&field_in);
int gf_order_h1 = std::max(gf_order, 1); // H1 should be at least order 1
H1_FECollection fec(gf_order_h1, dim);
const int ncomp = field_in.FESpace()->GetVDim();
FiniteElementSpace fes(mesh, &fec, ncomp);
GridFunction field_in_h1(&fes);
if (avgtype == AvgType::ARITHMETIC)
{
field_in_h1.ProjectDiscCoefficient(field_in_dg, GridFunction::ARITHMETIC);
}
else if (avgtype == AvgType::HARMONIC)
{
field_in_h1.ProjectDiscCoefficient(field_in_dg, GridFunction::HARMONIC);
}
else
{
MFEM_ABORT("Invalid averaging type.");
}
if (gf_order_h1 == mesh_order) // basis is GaussLobatto by default
{
InterpolateH1(field_in_h1, field_out_l2);
}
else
{
InterpolateGeneral(field_in_h1, field_out_l2);
}
// Copy interpolated values for the points on element border
for (int j = 0; j < ncomp; j++)
{
for (int i = 0; i < indl2.Size(); i++)
{
int idx = indl2[i] + j*points_cnt;
field_out(idx) = field_out_l2(idx);
}
}
}
}
void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
Vector &field_out)
{
FiniteElementSpace ind_fes(mesh, field_in.FESpace()->FEColl());
GridFunction field_in_scalar(&ind_fes);
Vector node_vals;
const int ncomp = field_in.FESpace()->GetVDim(),
points_fld = field_in.Size() / ncomp,
points_cnt = gsl_code.Size();
field_out.SetSize(points_cnt*ncomp);
field_out = default_interp_value;
for (int i = 0; i < ncomp; i++)
{
const int dataptrin = i*points_fld,
dataptrout = i*points_cnt;
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
GetNodeValues(field_in_scalar, node_vals);
if (dim==2)
{
findpts_eval_2(field_out.GetData()+dataptrout, sizeof(double),
gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
gsl_ref.GetData(), sizeof(double) * dim,
points_cnt, node_vals.GetData(), fdata2D);
}
else
{
findpts_eval_3(field_out.GetData()+dataptrout, sizeof(double),
gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
gsl_ref.GetData(), sizeof(double) * dim,
points_cnt, node_vals.GetData(), fdata3D);
}
}
}
void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
Vector &field_out)
{
int ncomp = field_in.VectorDim(),
nptorig = points_cnt,
npt = points_cnt;
field_out.SetSize(points_cnt*ncomp);
field_out = default_interp_value;
if (gsl_comm->np == 1) // serial
{
for (int index = 0; index < npt; index++)
{
if (gsl_code[index] == 2) { continue; }
IntegrationPoint ip;
ip.Set2(gsl_mfem_ref.GetData()+index*dim);
if (dim == 3) { ip.z = gsl_mfem_ref(index*dim + 2); }
Vector localval(ncomp);
field_in.GetVectorValue(gsl_mfem_elem[index], ip, localval);
for (int i = 0; i < ncomp; i++)
{
field_out(index + i*npt) = localval(i);
}
}
}
else // parallel
{
// Determine number of points to be sent
int nptsend = 0;
for (int index = 0; index < npt; index++)
{
if (gsl_code[index] != 2) { nptsend +=1; }
}
// Pack data to send via crystal router
struct array *outpt = new array;
struct out_pt { double r[3], ival; uint index, el, proc; };
struct out_pt *pt;
array_init(struct out_pt, outpt, nptsend);
outpt->n=nptsend;
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < npt; index++)
{
if (gsl_code[index] == 2) { continue; }
for (int d = 0; d < dim; ++d) { pt->r[d]= gsl_mfem_ref(index*dim + d); }
pt->index = index;
pt->proc = gsl_proc[index];
pt->el = gsl_mfem_elem[index];
++pt;
}
// Transfer data to target MPI ranks
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
if (ncomp == 1)
{
// Interpolate the grid function
npt = outpt->n;
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < npt; index++)
{
IntegrationPoint ip;
ip.Set3(&pt->r[0]);
pt->ival = field_in.GetValue(pt->el, ip, 1);
++pt;
}
// Transfer data back to source MPI rank
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
npt = outpt->n;
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < npt; index++)
{
field_out(pt->index) = pt->ival;
++pt;
}
array_free(outpt);
delete outpt;
}
else // ncomp > 1
{
// Interpolate data and store in a Vector
npt = outpt->n;
pt = (struct out_pt *)outpt->ptr;
Vector vec_int_vals(npt*ncomp);
for (int index = 0; index < npt; index++)
{
IntegrationPoint ip;
ip.Set3(&pt->r[0]);
Vector localval(vec_int_vals.GetData()+index*ncomp, ncomp);
field_in.GetVectorValue(pt->el, ip, localval);
++pt;
}
// Save index and proc data in a struct
struct array *savpt = new array;
struct sav_pt { uint index, proc; };
struct sav_pt *spt;
array_init(struct sav_pt, savpt, npt);
savpt->n=npt;
spt = (struct sav_pt *)savpt->ptr;
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < npt; index++)
{
spt->index = pt->index;
spt->proc = pt->proc;
++pt; ++spt;
}
array_free(outpt);
delete outpt;
// Copy data from save struct to send struct and send component wise
struct array *sendpt = new array;
struct send_pt { double ival; uint index, proc; };
struct send_pt *sdpt;
for (int j = 0; j < ncomp; j++)
{
array_init(struct send_pt, sendpt, npt);
sendpt->n=npt;
spt = (struct sav_pt *)savpt->ptr;
sdpt = (struct send_pt *)sendpt->ptr;
for (int index = 0; index < npt; index++)
{
sdpt->index = spt->index;
sdpt->proc = spt->proc;
sdpt->ival = vec_int_vals(j + index*ncomp);
++sdpt; ++spt;
}
sarray_transfer(struct send_pt, sendpt, proc, 1, cr);
sdpt = (struct send_pt *)sendpt->ptr;
for (int index = 0; index < nptorig; index++)
{
int idx = sdpt->index + j*nptorig;
field_out(idx) = sdpt->ival;
++sdpt;
}
array_free(sendpt);
}
array_free(savpt);
delete sendpt;
delete savpt;
} // ncomp > 1
} // parallel
delete meshsplit;
}
} // namespace mfem
+45 -93
View File
@@ -20,66 +20,28 @@
struct comm;
struct findpts_data_2;
struct findpts_data_3;
struct array;
struct crystal;
namespace mfem
{
/** \brief FindPointsGSLIB can robustly evaluate a GridFunction on an arbitrary
* collection of points. There are three key functions in FindPointsGSLIB:
*
* 1. Setup - constructs the internal data structures of gslib.
*
* 2. FindPoints - for any given arbitrary set of points in physical space,
* gslib finds the element number, MPI rank, and the reference space
* coordinates inside the element that each point is located in. gslib also
* returns a code that indicates whether the point was found inside an
* element, on element border, or not found in the domain.
*
* 3. Interpolate - Interpolates any grid function at the points found using 2.
*
* FindPointsGSLIB provides interface to use these functions individually or
* using a single call.
*/
class FindPointsGSLIB
{
public:
enum AvgType {NONE, ARITHMETIC, HARMONIC}; // Average type for L2 functions
protected:
Mesh *mesh, *meshsplit;
IntegrationRule *ir_simplex; // IntegrationRule to split quads/hex -> simplex
struct findpts_data_2 *fdata2D; // gslib's internal data
struct findpts_data_3 *fdata3D; // gslib's internal data
struct crystal *cr; // gslib's internal data
struct comm *gsl_comm; // gslib's internal data
int dim, points_cnt;
Array<unsigned int> gsl_code, gsl_proc, gsl_elem, gsl_mfem_elem;
Vector gsl_mesh, gsl_ref, gsl_dist, gsl_mfem_ref;
bool setupflag; // flag to indicate whether gslib data has been setup
double default_interp_value; // used for points that are not found in the mesh
AvgType avgtype; // average type used for L2 functions
Mesh *mesh;
IntegrationRule *ir_simplex;
struct findpts_data_2 *fdata2D;
struct findpts_data_3 *fdata3D;
int dim;
Array<unsigned int> gsl_code, gsl_proc, gsl_elem;
Vector gsl_mesh, gsl_ref, gsl_dist;
bool setupflag;
struct comm *gsl_comm;
/// Get GridFunction from MFEM format to GSLIB format
void GetNodeValues(const GridFunction &gf_in, Vector &node_vals);
/// Get nodal coordinates from mesh to the format expected by GSLIB for quads
/// and hexes
void GetQuadHexNodalCoordinates();
/// Convert simplices to quad/hexes and then get nodal coordinates for each
/// split element into format expected by GSLIB
void GetSimplexNodalCoordinates();
/// Use GSLIB for communication and interpolation
void InterpolateH1(const GridFunction &field_in, Vector &field_out);
/// Uses GSLIB Crystal Router for communication followed by MFEM's
/// interpolation functions
void InterpolateGeneral(const GridFunction &field_in, Vector &field_out);
/// Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For simplices mesh
/// find the original element number (that was split into micro quads/hexes
/// by GetSimplexNodalCoordinates())
void MapRefPosAndElemIndices();
public:
FindPointsGSLIB();
@@ -102,37 +64,45 @@ public:
void Setup(Mesh &m, const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
/** Searches positions given in physical space by @a point_pos. These positions
must by ordered by nodes: (XXX...,YYY...,ZZZ).
This function populates the following member variables:
#gsl_code Return codes for each point: inside element (0),
element boundary (1), not found (2).
#gsl_proc MPI proc ids where the points were found.
#gsl_elem Element ids where the points were found.
Defaults to 0 for points that were not found.
#gsl_mfem_elem Element ids corresponding to MFEM-mesh where the points
were found. #gsl_mfem_elem != #gsl_elem for simplices
Defaults to 0 for points that were not found.
#gsl_ref Reference coordinates of the found point.
Ordered by vdim (XYZ,XYZ,XYZ...). Defaults to -1 for
points that were not found. Note: the gslib reference
frame is [-1,1].
#gsl_mfem_ref Reference coordinates #gsl_ref mapped to [0,1].
Defaults to 0 for points that were not found.
#gsl_dist Distance between the sought and the found point
in physical space. */
/** Searches positions given in physical space by @a point_pos. All output
Arrays and Vectors are expected to have the correct size.
@param[in] point_pos Positions to be found. Must by ordered by nodes
(XXX...,YYY...,ZZZ).
@param[out] codes Return codes for each point: inside element (0),
element boundary (1), not found (2).
@param[out] proc_ids MPI proc ids where the points were found.
@param[out] elem_ids Element ids where the points were found.
@param[out] ref_pos Reference coordinates of the found point. Ordered
by vdim (XYZ,XYZ,XYZ...).
Note: the gslib reference frame is [-1,1].
@param[out] dist Distance between the sought and the found point
in physical space. */
void FindPoints(const Vector &point_pos, Array<unsigned int> &codes,
Array<unsigned int> &proc_ids, Array<unsigned int> &elem_ids,
Vector &ref_pos, Vector &dist);
void FindPoints(const Vector &point_pos);
/// Setup FindPoints and search positions
void FindPoints(Mesh &m, const Vector &point_pos, const double bb_t = 0.1,
const double newt_tol = 1.0e-12, const int npt_max = 256);
/** Interpolation of field values at prescribed reference space positions.
@param[in] codes Return codes for each point: inside element (0),
element boundary (1), not found (2).
@param[in] proc_ids MPI proc ids where the points were found.
@param[in] elem_ids Element ids where the points were found.
@param[in] ref_pos Reference coordinates of the found point. Ordered
by vdim (XYZ,XYZ,XYZ...).
Note: the gslib reference frame is [-1,1].
@param[in] field_in Function values that will be interpolated on the
reference positions. Note: it is assumed that
@a field_in is in H1 and in the same space as the
mesh that was given to Setup().
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value. */
@param[out] field_out Interpolated values. */
void Interpolate(Array<unsigned int> &codes, Array<unsigned int> &proc_ids,
Array<unsigned int> &elem_ids, Vector &ref_pos,
const GridFunction &field_in, Vector &field_out);
void Interpolate(const GridFunction &field_in, Vector &field_out);
/** Search positions and interpolate */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
@@ -141,45 +111,27 @@ public:
void Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out);
/// Average type to be used for L2 functions in-case a point is located at
/// an element boundary where the function might be multi-valued.
void SetL2AvgType(AvgType avgtype_) { avgtype = avgtype_; }
/// Set the default interpolation value for points that are not found in the
/// mesh.
void SetDefaultInterpolationValue(double interp_value_)
{
default_interp_value = interp_value_;
}
/** Cleans up memory allocated internally by gslib.
Note that in parallel, this must be called before MPI_Finalize(), as it
calls MPI_Comm_free() for internal gslib communicators. */
Note that in parallel, this must be called before MPI_Finalize(), as
it calls MPI_Comm_free() for internal gslib communicators. */
void FreeData();
/// Return code for each point searched by FindPoints: inside element (0), on
/// element boundary (1), or not found (2).
const Array<unsigned int> &GetCode() const { return gsl_code; }
/// Return element number for each point found by FindPoints.
const Array<unsigned int> &GetElem() const { return gsl_mfem_elem; }
const Array<unsigned int> &GetElem() const { return gsl_elem; }
/// Return MPI rank on which each point was found by FindPoints.
const Array<unsigned int> &GetProc() const { return gsl_proc; }
/// Return reference coordinates for each point found by FindPoints.
const Vector &GetReferencePosition() const { return gsl_mfem_ref; }
const Vector &GetReferencePosition() const { return gsl_ref; }
/// Return distance Distance between the sought and the found point
/// in physical space, for each point found by FindPoints.
const Vector &GetDist() const { return gsl_dist; }
/// Return element number for each point found by FindPoints corresponding to
/// GSLIB mesh. gsl_mfem_elem != gsl_elem for mesh with simplices.
const Array<unsigned int> &GetGSLIBElem() const { return gsl_elem; }
/// Return reference coordinates in [-1,1] (internal range in GSLIB) for each
/// point found by FindPoints.
const Vector &GetGSLIBReferencePosition() const { return gsl_ref; }
};
} // namespace mfem
#endif // MFEM_USE_GSLIB
#endif //MFEM_USE_GSLIB
#endif // MFEM_GSLIB
#endif //MFEM_GSLIB guard
-25
View File
@@ -618,26 +618,6 @@ void QuadratureFunctions1D::OpenHalfUniform(const int np, IntegrationRule* ir)
CalculateUniformWeights(ir, Quadrature1D::OpenHalfUniform);
}
void QuadratureFunctions1D::ClosedGL(const int np, IntegrationRule* ir)
{
ir->SetSize(np);
ir->IntPoint(0).x = 0.0;
ir->IntPoint(np-1).x = 1.0;
if ( np > 2 )
{
IntegrationRule gl_ir;
GaussLegendre(np-1, &gl_ir);
for (int i = 1; i < np-1; ++i)
{
ir->IntPoint(i).x = (gl_ir.IntPoint(i-1).x + gl_ir.IntPoint(i).x)/2;
}
}
CalculateUniformWeights(ir, Quadrature1D::ClosedGL);
}
void QuadratureFunctions1D::GivePolyPoints(const int np, double *pts,
const int type)
{
@@ -670,11 +650,6 @@ void QuadratureFunctions1D::GivePolyPoints(const int np, double *pts,
OpenHalfUniform(np, &ir);
break;
}
case Quadrature1D::ClosedGL:
{
ClosedGL(np, &ir);
break;
}
default:
{
MFEM_ABORT("Asking for an unknown type of 1D Quadrature points, "

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