Merge remote-tracking branch 'origin/master' into aniso-diffusion-dev

# Conflicts:
#	fem/bilininteg.hpp
#	fem/coefficient.cpp
#	fem/coefficient.hpp
#	linalg/hypre.cpp
#	linalg/hypre.hpp
#	linalg/solvers.cpp
#	makefile
#	miniapps/common/pfem_extras.hpp
#	miniapps/electromagnetics/tesla_solver.hpp

.github/actions/sanitize/config/action.yml

@@ -1,154 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: Sanitizer Config
-description: Sets up environment variables for MFEM sanitizer workflow
-
-inputs:
-  DEBUG:
-    description: If true, use intermediate caches to speed up the workflow
-                 by reusing previous builds.
-    default: false
-
-  REPOSITORY:
-    description: Repository to checkout
-    default: mfem/mfem
-
-  BRANCH:
-    description: Branch to checkout
-    default: ubsan
-
-  CLANG_VER:
-    description: CLANG version to use
-    default: 18
-
-  # https://github.com/llvm/llvm-project/releases
-  LLVM_VER:
-    description: LLVM version to use
-    default: 19.1.7
-
-  # https://github.com/hypre-space/hypre/releases
-  HYPRE_VER:
-    description: HYPRE version to use
-    default: 2.19.0
-
-  METIS_VER:
-    description: METIS version to use
-    default: 4.0.3
-
-  CTEST:
-    description: CTest command to use
-    default: ctest -j --test-load $(nproc)
-                      --schedule-random
-                      --stop-on-failure --output-on-failure
-                      --test-dir
-
-  # https://clang.llvm.org/docs/AddressSanitizer.html
-  ASAN_OPTIONS:
-    default: detect_leaks=1,
-             strict_init_order=1,
-             strict_string_checks=1,
-             check_initialization_order=1,
-             detect_stack_use_after_return=1
-  ASAN_CXXFLAGS:
-    default: -fsanitize=address
-             -fsanitize-address-use-after-scope
-  ASAN_LDFLAGS:
-    default: -fsanitize=address
-
-  # https://clang.llvm.org/docs/UndefinedBehaviorSanitizer.html
-  UBSAN_OPTIONS:
-    default: halt_on_error=1, print_stacktrace=1
-  UBSAN_CXXFLAGS:
-    default: -fsanitize=undefined
-  UBSAN_LDFLAGS:
-    default: -fsanitize=undefined
-
-  # https://clang.llvm.org/docs/MemorySanitizer.html
-  MSAN_OPTIONS:
-    default: "poison_in_dtor=1"
-  MSAN_CXXFLAGS:
-    default: -fsanitize=memory
-             -fsanitize-memory-track-origins
-             -fsanitize-memory-use-after-dtor
-  MSAN_LDFLAGS:
-    default: -fsanitize=memory
-
-  LSAN_DIR:
-    description: LSAN suppression directory
-    default: lsan
-
-  LSAN_FILE:
-    description: LSAN suppression file
-    default: lsan.supp
-
-  NO_FLAGS:
-    description: If true, do not set any CXXFLAGS or LDFLAGS.
-    default: false
-
-runs:
-  using: 'composite'
-  steps:
-    - name: Env (Inputs)
-      run: |
-        echo DEBUG=${{inputs.DEBUG}} >> $GITHUB_ENV
-        echo REPOSITORY=${{inputs.REPOSITORY}} >> $GITHUB_ENV
-        echo BRANCH=${{inputs.BRANCH}} >> $GITHUB_ENV
-        echo CLANG_VER=${{inputs.CLANG_VER}} >> $GITHUB_ENV
-        echo LLVM_VER=${{inputs.LLVM_VER}} >> $GITHUB_ENV
-        echo HYPRE_VER=${{inputs.HYPRE_VER}} >> $GITHUB_ENV
-        echo METIS_VER=${{inputs.METIS_VER}} >> $GITHUB_ENV
-        echo CTEST=${{inputs.CTEST}} >> $GITHUB_ENV
-        echo ASAN_OPTIONS=${{inputs.ASAN_OPTIONS}} >> $GITHUB_ENV
-        echo UBSAN_OPTIONS=${{inputs.UBSAN_OPTIONS}} >> $GITHUB_ENV
-        echo MSAN_OPTIONS=${{inputs.MSAN_OPTIONS}} >> $GITHUB_ENV
-        echo LSAN_DIR=${{inputs.LSAN_DIR}} >> $GITHUB_ENV
-        echo LSAN_FILE=${{inputs.LSAN_FILE}} >> $GITHUB_ENV
-        echo ASAN_CXXFLAGS=${{inputs.ASAN_CXXFLAGS}} >> $GITHUB_ENV
-        echo ASAN_LDFLAGS=${{inputs.ASAN_LDFLAGS}} >> $GITHUB_ENV
-        echo UBSAN_CXXFLAGS=${{inputs.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
-        echo UBSAN_LDFLAGS=${{inputs.UBSAN_LDFLAGS}} >> $GITHUB_ENV
-        echo MSAN_CXXFLAGS=${{inputs.MSAN_CXXFLAGS}} >> $GITHUB_ENV
-        echo MSAN_LDFLAGS=${{inputs.MSAN_LDFLAGS}} >> $GITHUB_ENV
-      shell: bash
-
-    - name: Env (dir)
-      run: |
-        echo LLVM_DIR=${{github.workspace}}/llvm >> $GITHUB_ENV
-        echo HYPRE_DIR=hypre-${{inputs.HYPRE_VER}} >> $GITHUB_ENV
-        echo METIS_DIR=metis-${{inputs.METIS_VER}} >> $GITHUB_ENV
-      shell: bash
-
-    - name: Env (bis)
-      run: |
-        echo CC=clang-${{inputs.CLANG_VER}} >> $GITHUB_ENV
-        echo CXX=clang++-${{inputs.CLANG_VER}} >> $GITHUB_ENV
-        echo LLVM_INC=${{env.LLVM_DIR}}/include/c++/v1 >> $GITHUB_ENV
-        echo LLVM_LIB=${{env.LLVM_DIR}}/lib >> $GITHUB_ENV
-        echo HYPRE_TGZ=v${{inputs.HYPRE_VER}}.tar.gz >> $GITHUB_ENV
-        echo METIS_TGZ=metis-${{inputs.METIS_VER}}.tar.gz >> $GITHUB_ENV
-        LSAN_SUPPRESSIONS="${{github.workspace}}/${{inputs.LSAN_DIR}}/${{inputs.LSAN_FILE}}"
-        echo "LSAN_OPTIONS=suppressions=$LSAN_SUPPRESSIONS" >> $GITHUB_ENV
-      shell: bash
-
-    - name: Env (ter)
-      if: ${{ inputs.NO_FLAGS != 'true' }}
-      run: |
-        echo LLVM_CXXFLAGS=-stdlib=libc++ -I${{env.LLVM_INC}} -Isystem${{env.LLVM_INC}} >> $GITHUB_ENV
-        echo LLVM_LDFLAGS=-L${{env.LLVM_LIB}} -lc++abi -Wl,-rpath,${{env.LLVM_LIB}} >> $GITHUB_ENV
-      shell: bash
-
-    - name: Env (quater)
-      if: ${{ inputs.NO_FLAGS != 'true' }}
-      run: |
-        echo CXXFLAGS=${{env.LLVM_CXXFLAGS}} >> $GITHUB_ENV
-        echo LDFLAGS=${{env.LLVM_LDFLAGS}} >> $GITHUB_ENV
-      shell: bash

.github/actions/sanitize/mfem/action.yml

@@ -1,91 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: 'MFEM Compilation'
-description: 'MFEM Compilation'
-
-inputs:
-  par:
-    description: 'Whether to build for parallel (true/false)'
-    default: false
-  sanitizer:
-    description: 'Sanitizer to use (asan, msan, ubsan)'
-    default: asan
-
-runs:
-  using: 'composite'
-  steps:
-    - uses: ./.github/actions/sanitize/config
-
-    - uses: actions/cache@v4
-      if: ${{env.DEBUG == 'true'}}
-      id: debug
-      with:
-        path: mfem/build
-        key: build-${{inputs.par}}-${{inputs.sanitizer}}
-
-    - uses: ./.github/actions/sanitize/setup
-      if: ${{steps.debug.outputs.cache-hit != 'true'}}
-      with:
-        par: ${{inputs.par}}
-        sanitizer: ${{inputs.sanitizer}}
-
-    - name: Build with ASAN
-      if: inputs.sanitizer == 'asan'
-      run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.ASAN_CXXFLAGS}} >> $GITHUB_ENV
-      shell: bash
-
-    - name: Build with MSAN
-      if: inputs.sanitizer == 'msan'
-      run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MSAN_CXXFLAGS}} >> $GITHUB_ENV
-      shell: bash
-
-    - name: Build with UBSAN
-      if: inputs.sanitizer == 'ubsan'
-      run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
-      shell: bash
-
-    - uses: mfem/github-actions/build-mfem@v2.5
-      if: ${{steps.debug.outputs.cache-hit != 'true'}}
-      env:
-        CXXFLAGS: ${{env.CXXFLAGS}}
-        LDFLAGS: ${{env.LDFLAGS}}
-      with:
-        mpi: ${{inputs.par == 'false' && 'seq' || 'par'}}
-        mfem-dir: mfem
-        os: ${{runner.os}}
-        library-only: true
-        build-system: cmake
-        hypre-dir: ${{env.HYPRE_DIR}}
-        metis-dir: ${{env.METIS_DIR}}
-        config-options: >-
-          -GNinja
-          -DMPICXX=${{env.CXX}}
-          -DCMAKE_CXX_STANDARD=17
-          -DMFEM_USE_MEMALLOC=OFF
-          -DCMAKE_BUILD_TYPE=Release
-          -DCMAKE_VERBOSE_MAKEFILE=ON
-          -DCMAKE_CXX_COMPILER=${{env.CXX}}
-          -DCMAKE_CXX_FLAGS_RELEASE='-g -O1 -fno-omit-frame-pointer'
-
-    - name: Delete object files
-      if: ${{steps.debug.outputs.cache-hit != 'true'}}
-      working-directory: mfem/build
-      run: find . -type f -name '*.o' -delete
-      shell: bash
-
-    - uses: actions/upload-artifact@v4
-      with:
-        name: build-${{inputs.par}}-${{inputs.sanitizer}}
-        path: mfem/build
-        if-no-files-found: error
-        retention-days: 1
-        overwrite: false

.github/actions/sanitize/mpi/action.yml

@@ -1,33 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: 'Install MPI'
-description: 'Installs MPI and set up its environment variables'
-
-runs:
-  using: 'composite'
-  steps:
-    - name: Install
-      run: sudo apt-get install openmpi-bin libopenmpi-dev
-      shell: bash
-
-    - name: Env
-      run: |
-        echo PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe >> $GITHUB_ENV
-        echo MPI_INC=$(mpicxx --showme:compile) >> $GITHUB_ENV
-        echo MPI_LIB=$(mpicxx --showme:link) >> $GITHUB_ENV
-      shell: bash
-
-    - name: Env (bis)
-      run: |
-        echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MPI_INC}} >> $GITHUB_ENV
-        echo LDFLAGS=${{env.LDFLAGS}} ${{env.MPI_LIB}} >> $GITHUB_ENV
-      shell: bash

.github/actions/sanitize/restore/action.yml

@@ -1,71 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: 'Restore state'
-description: 'Restore state to be able to run checks, tests'
-
-inputs:
-  par:
-    description: 'Whether to build for parallel (true/false)'
-    default: false
-  sanitizer:
-    description: 'Sanitizer to use (asan, msan, ubsan)'
-    default: asan
-  cache-path:
-    description: 'path to what needs to be restored'
-    default: none
-  cache-skip:
-    description: 'Skip cache restoration'
-    default: false
-
-outputs:
-  cache-hit:
-    description: 'Output from a specific step'
-    value: ${{steps.debug.outputs.cache-hit}}
-
-runs:
-  using: 'composite'
-  steps:
-    - uses: ./.github/actions/sanitize/config
-
-    - uses: actions/cache@v4
-      if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
-      id: debug
-      with:
-        path: ${{inputs.cache-path}}
-        key: ${{github.job}}-${{inputs.par}}-${{inputs.sanitizer}}
-
-    - uses: ./.github/actions/sanitize/setup
-      if: ${{steps.debug.outputs.cache-hit != 'true'}}
-      with:
-        par: ${{inputs.par}}
-        sanitizer: ${{inputs.sanitizer}}
-
-    - uses: actions/download-artifact@v4
-      with:
-        name: build-${{inputs.par}}-${{inputs.sanitizer}}
-        path: mfem/build
-
-    - name: Ninja Patch
-      working-directory: mfem/build
-      run: |
-        sed -i -e 's/CXX_STATIC_LIBRARY_LINKER__mfem_Release.*/CUSTOM_COMMAND/' build.ninja
-        sed -i -e '/build tests\/unit\/all:/ s/tests\/unit\/[^ ]*unit_tests[^ ]*//g' build.ninja
-        sed -i -e '/^add_test(\[=\[\(unit_tests\|punit_tests\)\]=\]/ s/)/ "--input-file .\/list-test-names-${{matrix.tag}}" "--min-duration 1")/' tests/unit/CTestTestfile.cmake
-      shell: bash
-
-    - name: Copy Data
-      if: ${{steps.debug.outputs.cache-hit != 'true'}}
-      working-directory: mfem/build
-      run: |
-        ninja cmake_object_order_depends_target_unit_tests
-        cp -pR ../tests/unit/data tests/unit
-      shell: bash

.github/actions/sanitize/setup/action.yml

@@ -1,64 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: 'Setup state'
-description: 'Sets up the state to be able to run build & run'
-
-inputs:
-  par:
-    description: 'Whether to build for parallel (true/false)'
-    default: false
-  sanitizer:
-    description: 'Sanitizer to use (asan, msan, ubsan)'
-    default: asan
-
-runs:
-  using: 'composite'
-  steps:
-    - uses: actions/cache/restore@v4  # Cache for LLVM libcxx
-      with:
-        path: ${{env.LLVM_DIR}}
-        fail-on-cache-miss: true
-        key: build-libcxx-${{env.LLVM_VER}}-${{inputs.sanitizer}}
-
-    - uses: ./.github/actions/sanitize/mpi
-      if: ${{inputs.par == 'true'}}
-
-    - uses: actions/cache/restore@v4  # Cache for Hypre
-      if: ${{inputs.par == 'true'}}
-      with:
-        path: ${{env.HYPRE_DIR}}
-        fail-on-cache-miss: true
-        key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
-
-    - uses: actions/cache/restore@v4  # Cache for Metis
-      if: ${{inputs.par == 'true'}}
-      with:
-        path: ${{env.METIS_DIR}}
-        fail-on-cache-miss: true
-        key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
-
-    - name: Hypre/Metis links
-      if: ${{inputs.par == 'true'}}
-      run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
-      shell: bash
-
-    - uses: actions/cache/restore@v4  # Cache for LSAN suppression file
-      with:
-        path: ${{env.LSAN_DIR}}
-        fail-on-cache-miss: true
-        key: build-lsan-suppression-file
-
-    - uses: actions/checkout@v4  # Checkout the repository
-      with:
-        path: mfem
-        # ref: ${{env.BRANCH}}
-        # repository: ${{env.REPOSITORY}}

.github/workflows/README.md

@@ -7,17 +7,18 @@
 
                                https://mfem.org
 
+
 This directory contains the GitHub CI scripts for MFEM.
 
 Note that some of these scripts use the shared MFEM GitHub Actions from the external mfem/github-actions repository:
 
-  <https://github.com/mfem/github-actions>
+  https://github.com/mfem/github-actions
 
-For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch in the above from which the action is taken.
+For a particular action, e.g. `mfem/github-actions/build-mfem@v2.1`, the `v2.1` suffix denotes the branch in the above from which the action is taken.
 
 The current CI workflows are:
 
-## `repo-check.yml`
+### `repo-check.yml`
 
 Runs a number of static repository-level sanity checks.
 
@@ -29,39 +30,19 @@ Runs a number of static repository-level sanity checks.
 
 - `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
 
-## `mfem-analysis.yml` (`build-analysis`)
+### `mfem-analysis.yml` (`build-analysis`)
 
 Checks if the code builds and satisfies minimal requirements.
 
 - `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
 
-## `builds-and-tests.yml`
+### `builds-and-tests.yml`
 
 Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
 
-Uses the following GitHub Actions from <https://github.com/mfem/github-actions>:
+Uses the following GitHub Actions from https://github.com/mfem/github-actions:
 
 - `mfem/github-actions/build-hypre`
 - `mfem/github-actions/build-metis`
 - `mfem/github-actions/build-mfem`
 - `mfem/github-actions/upload-coverage`
-
-## Sanitizer Workflow for MFEM Verification
-
-This workflow validates MFEM unit tests, examples, and miniapps using sanitizer tools.
-
-- `sanitizers.yml` orchestrates:
-  - Building and caching dependencies: HYPRE, METIS, LSAN suppression file, and LLVM libcxx.
-  - Launching fine-grained jobs for serial (ASAN, MSAN, UBSAN) and parallel (ASAN, UBSAN) sanitizers.
-- `sanitize-tests.yml` is a reusable workflow accepting `par` mode (`true` for parallel) and `sanitizer` (ASAN, MSAN, or UBSAN) as inputs. It executes the following jobs:
-  - **Build**: Compiles the MFEM library with specified parallel and sanitizer settings.
-  - **Check**: Runs verification checks.
-  - Parallel jobs to test the following: **Examples**, **Miniapps** and **Unit tests**
-
-The workflow leverages composite actions in `.github/actions/sanitize/`:
-
-- `config`: Centralizes settings for the sanitizer workflow.
-- `mfem`: Manages the MFEM library build process.
-- `mpi`: Installs MPI and applies additional compilation flags.
-- `restore`: Restores the testing environment state.
-- `setup`: Builds or restores cached dependencies.

.github/workflows/builds-and-tests.yml

@@ -58,7 +58,6 @@ jobs:
         build-system: [make, cmake]
         hypre-target: [int32]
         precision: [fp64]
-        enzyme: [false]
         exclude:
           - os: ubuntu-latest
             build-system: cmake
@@ -81,17 +80,15 @@ jobs:
             codecov: YES
           - os: ubuntu-latest
             target: dbg
-            config-opts: "CPPFLAGS+=-Og"
+            config-opts: 'CPPFLAGS+=-Og'
           - os: macos-latest
             codecov: NO
           - os: windows-latest
             codecov: NO
-            # config-opts: '-G "Ninja Multi-Config"'
           - os: windows-latest
             target: opt
             mpi: par
-            config-opts: "-DBUILD_SHARED_LIBS=ON"
-            # config-opts: '-DBUILD_SHARED_LIBS=ON -G "Ninja Multi-Config"'
+            config-opts: '-DBUILD_SHARED_LIBS=ON'
           - os: ubuntu-latest
             target: opt
             codecov: NO
@@ -99,7 +96,7 @@ jobs:
             build-system: cmake
             hypre-target: int32
             precision: fp64
-            config-opts: "-DCMAKE_INSTALL_PREFIX=../cmake-install"
+            config-opts: '-DCMAKE_INSTALL_PREFIX=../cmake-install'
             # This option can be set to pass additional configuration options to
             # the MFEM configuration command.
             # config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
@@ -117,37 +114,18 @@ jobs:
             build-system: make
             hypre-target: int32
             precision: fp32
-          - os: macos-latest
-            target: opt
-            codecov: NO
-            mpi: par
-            build-system: make
-            hypre-target: int32
-            precision: fp32
-          - os: macos-latest
-            target: opt
-            codecov: NO
-            mpi: par
-            build-system: make
-            hypre-target: int32
-            precision: fp64
-            enzyme: true
-            config-opts: MFEM_USE_ENZYME=YES ENZYME_DIR=$(brew --prefix enzyme) LDFLAGS=-L$LLVM_PREFIX/lib/c++
-
-    name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}
+    name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
 
     runs-on: ${{ matrix.os }}
 
-    continue-on-error: ${{ matrix.enzyme && true || false }}
-
     steps:
       # Fix 'No space left on device' errors for Ubuntu builds.
       - name: Run Actions Cleaner
         if: matrix.os == 'ubuntu-latest'
         uses: easimon/maximize-build-space@v8
         with:
-          overprovision-lvm: "true"
-          remove-android: "true"
+          overprovision-lvm: 'true'
+          remove-android: 'true'
 
       # Checkout MFEM in "mfem" subdirectory. Final path:
       # /home/runner/work/mfem/mfem/mfem
@@ -159,24 +137,10 @@ jobs:
           # Fetch the complete history for codecov to access commits ID
           fetch-depth: 0
 
-      - name: Windows environment - PowerShell [debug]
-        if: matrix.os == 'windows-latest'
-        run: |
-          ls env: | fl
-
-      - name: Windows environment - Bash [debug]
-        if: matrix.os == 'windows-latest'
-        run: |
-          env
-        shell: bash
-
-      # For info on Xcode see:
-      #  - https://github.com/actions/runner-images/issues/12541
-      #  - https://github.com/actions/runner-images/blob/releases/macos-15-arm64/20250811/images/macos/macos-15-arm64-Readme.md#xcode
       - name: Xcode version setup (MacOS)
         if: matrix.os == 'macos-latest'
         run: |
-          XCODE_PATH="/Applications/Xcode_16.4.app"
+          XCODE_PATH="/Applications/Xcode_15.3.app"
           echo "> sudo xcode-select -s ${XCODE_PATH}"
           sudo xcode-select -s ${XCODE_PATH}
           echo "> g++ -v"
@@ -190,8 +154,7 @@ jobs:
       - name: get MPI (Linux)
         if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
         run: |
-          sudo apt-get install openmpi-bin libopenmpi-dev
-          export OMPI_MCA_rmaps_base_oversubscribe=1
+          sudo apt-get install mpich libmpich-dev
 
       - name: get lcov (Linux)
         if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
@@ -228,7 +191,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: ${{ env.HYPRE_TOP_DIR }}
-          key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
+          key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
 
       - name: get hypre
         if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
@@ -287,20 +250,6 @@ jobs:
         run: |
           vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
 
-      # It's usually fine to build the above TPLs with a different compiler.
-      #
-      - name: install Enzyme (macOS w/ Enzyme)
-        if: matrix.enzyme && matrix.os == 'macos-latest'
-        run: |
-          export HOMEBREW_NO_INSTALL_CLEANUP=1
-          brew update
-          brew install enzyme
-          ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
-          LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
-          echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
-          echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
-          echo "OMPI_CXX=$LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
-
       # MFEM build and test
       - name: build
         uses: mfem/github-actions/build-mfem@v2.5

.github/workflows/mfem-analysis.yml

@@ -45,15 +45,14 @@ jobs:
 
       - name: Get MPI (Linux)
         run: |
-          sudo apt-get install openmpi-bin libopenmpi-dev
-          export OMPI_MCA_rmaps_base_oversubscribe=1
+          sudo apt-get install mpich libmpich-dev
 
       - name: Cache Hypre Install
         id: hypre-cache
         uses: actions/cache@v4
         with:
           path: ${{ env.HYPRE_TOP_DIR }}
-          key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
+          key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.5
 
       - name: Get Hypre
         if: steps.hypre-cache.outputs.cache-hit != 'true'

.github/workflows/mfem-sanitizer.yml

@@ -0,0 +1,69 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+name: "Sanitizer"
+
+permissions:
+  actions: write
+
+on:
+  push:
+    branches:
+      - master
+      - next
+  pull_request:
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  Serial:
+    runs-on: ubuntu-24.04
+
+    steps:
+      - name: MFEM Checkout
+        uses: actions/checkout@v4
+        with:
+          path: mfem
+
+      - name: MFEM Build
+        uses: mfem/github-actions/build-mfem@v2.5
+        with:
+          os: ${{ runner.os }}
+          target: opt
+          mpi: seq
+          hypre-dir: unused-hypre-dir
+          metis-dir: unused-metis-dir
+          mfem-dir: mfem
+          build-system: make
+          library-only: false
+          config-options:
+            CXX="clang++-18"
+            CXXFLAGS="-g -O1 -std=c++11
+                      -fsanitize=address
+                      -fno-omit-frame-pointer
+                      -fsanitize-address-use-after-scope"
+
+      - name: MFEM Info
+        working-directory: mfem
+        run: make info
+
+      - name: MFEM Sanitize
+        working-directory: mfem
+        run:
+          ASAN_OPTIONS="detect_leaks=1,
+                        strict_init_order=1,
+                        strict_string_checks=1,
+                        check_initialization_order=1,
+                        detect_stack_use_after_return=1"
+          make test

.github/workflows/sanitize-build-hypre.yml

@@ -1,39 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: build-hypre
-on:
-  workflow_call:
-jobs:
-  build-hypre:
-    runs-on: ubuntu-latest
-    name: 2.19.0
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/config
-      - name: Cache
-        id: cache
-        uses: actions/cache@v4
-        with:
-          path: ${{env.HYPRE_DIR}}
-          key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
-      - name: Setup
-        if: steps.cache.outputs.cache-hit != 'true'
-        uses: ./.github/actions/sanitize/mpi
-      - name: Build
-        if: steps.cache.outputs.cache-hit != 'true'
-        uses: mfem/github-actions/build-hypre@v2.5
-        with:
-          archive: ${{env.HYPRE_TGZ}}
-          dir: ${{env.HYPRE_DIR}}
-          target: int32
-          precision: fp64
-          build-system: make

.github/workflows/sanitize-build-libcxx.yml

@@ -1,76 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: build-libcxx
-on:
-  workflow_call:
-jobs:
-  build-llvm-libcxx:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        sanitizer: [asan, msan, ubsan]
-        include:
-          - sanitizer: asan
-            llvm_use_sanitizer: "Address"
-          - sanitizer: msan
-            llvm_use_sanitizer: "MemoryWithOrigins"
-          - sanitizer: ubsan
-            llvm_use_sanitizer: "Undefined"
-    name: ${{matrix.sanitizer}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/config
-        with:
-          NO_FLAGS: true
-      - name: Cache
-        id: cache
-        uses: actions/cache@v4
-        with:
-          path: ${{env.LLVM_DIR}}
-          key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
-      - name: Clone
-        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
-        run: >
-          git clone --filter=blob:none --depth=1
-          --branch llvmorg-${{env.LLVM_VER}}
-          --no-checkout https://github.com/llvm/llvm-project.git llvm-project
-      - name: Checkout
-        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
-        working-directory: llvm-project
-        run: |
-          git sparse-checkout set --cone
-          git checkout llvmorg-${{env.LLVM_VER}}
-          git sparse-checkout set cmake llvm/cmake runtimes libcxx libcxxabi
-      - name: Mkdir
-        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
-        run: mkdir ${{env.LLVM_DIR}}
-      - name: CMake
-        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
-        working-directory: ${{env.LLVM_DIR}}
-        run: >
-          VERBOSE=1
-          cmake -GNinja ../llvm-project/runtimes/
-          -DCMAKE_C_COMPILER=${{env.CC}}
-          -DCMAKE_CXX_COMPILER=${{env.CXX}}
-          -DCMAKE_BUILD_TYPE=RelWithDebInfo
-          -DCMAKE_INSTALL_PREFIX=/usr
-          -DLLVM_USE_SANITIZER=${{matrix.llvm_use_sanitizer}}
-          -DLLVM_BUILD_32_BITS=OFF
-          -DLIBCXXABI_USE_LLVM_UNWINDER=OFF
-          -DLLVM_INCLUDE_TESTS=OFF
-          -DLIBCXX_INCLUDE_TESTS=OFF
-          -DLIBCXX_INCLUDE_BENCHMARKS=OFF
-          -DLLVM_ENABLE_RUNTIMES='libcxx;libcxxabi'
-      - name: Build
-        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
-        working-directory: ${{env.LLVM_DIR}}
-        run: cmake --build . -- cxx cxxabi

.github/workflows/sanitize-build-lsan.yml

@@ -1,38 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: build-file-lsan
-on:
-  workflow_call:
-jobs:
-  build-file-lsan:
-    runs-on: ubuntu-latest
-    name: lsan.supp
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/config
-      - name: Cache
-        id: cache
-        uses: actions/cache@v4
-        with:
-          path: ${{env.LSAN_DIR}}
-          key: build-lsan-suppression-file
-      - name: Setup
-        if: steps.cache.outputs.cache-hit != 'true'
-        run: |
-          mkdir -p ${{env.LSAN_DIR}}
-          cat << EOF > ${{env.LSAN_DIR}}/${{env.LSAN_FILE}}
-          leak:libevent_core-2.1.so
-          leak:ompi_mpi_finalize
-          leak:ompi_mpi_init
-          leak:PMPI_Init
-          leak:strdup
-          EOF

.github/workflows/sanitize-build-metis.yml

@@ -1,36 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: build-metis
-on:
-  workflow_call:
-jobs:
-  build-metis:
-    runs-on: ubuntu-latest
-    name: 4.0.3
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/config
-      - name: Cache
-        id: cache
-        uses: actions/cache@v4
-        with:
-          path: ${{env.METIS_DIR}}
-          key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
-      - name: Setup
-        if: steps.cache.outputs.cache-hit != 'true'
-        uses: ./.github/actions/sanitize/mpi
-      - name: Build
-        if: steps.cache.outputs.cache-hit != 'true'
-        uses: mfem/github-actions/build-metis@v2.5
-        with:
-          archive: ${{env.METIS_TGZ}}
-          dir: ${{env.METIS_DIR}}

.github/workflows/sanitize-tests.yml

@@ -1,197 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: Sanitize
-on:
-  workflow_call:
-    inputs:
-      par:
-        description: 'Whether to build for parallel (true/false)'
-        required: false
-        default: false
-        type: boolean
-      sanitizer:
-        description: 'Sanitizer to use (asan, msan, ubsan)'
-        required: true
-        default: asan
-        type: string
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/mfem
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-
-  check:
-    needs: [build]
-    runs-on: ubuntu-latest
-    env:
-      ex: ${{inputs.par && 'ex1p' || 'ex1'}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/restore
-        id: restore
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-          cache-path: mfem/build/examples/${{env.ex}}
-      - name: MFEM Check
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: ninja -v check
-
-  examples:
-    needs: [check]
-    runs-on: ubuntu-latest
-    env:
-      exclude: ${{inputs.par && '-E "_ser"' || ''}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/restore
-        id: restore
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-          cache-path: mfem/build/examples/ex1
-      - name: Build Examples
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: ninja -v examples
-      - name: Test Examples
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: |
-          ${{env.CTEST}} examples ${{env.exclude}} --show-only
-          ${{env.CTEST}} examples ${{env.exclude}}
-
-  miniapps:
-    needs: [check]
-    runs-on: ubuntu-latest
-    env:
-      exclude: ${{inputs.par && '-E "_ser"' || ''}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/restore
-        id: restore
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-          cache-path: mfem/build/miniapps/meshing/minimal-surface
-      - name: Build Miniapps
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: ninja -v miniapps
-      - name: Test Miniapps
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: |
-          ${{env.CTEST}} miniapps ${{env.exclude}} --show-only
-          ${{env.CTEST}} miniapps ${{env.exclude}}
-
-  tests-miniapps:
-    needs: [check]
-    runs-on: ubuntu-latest
-    env:
-      run: ${{inputs.par && '-R "_cpu_np"' || ''}}
-      exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/restore
-        id: restore
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-          cache-path: mfem/build/tests/unit/sedov_tests_cpu
-      - name: Build Tests Unit Miniapps
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: ninja -v tests/unit/all
-      - name: Run Tests Unit Miniapps
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: |
-          ${{env.CTEST}} tests/unit -E ${{env.exclude}} ${{env.run}} --show-only
-          ${{env.CTEST}} tests/unit -E ${{env.exclude}} ${{env.run}}
-
-  tests-unit-build:
-    needs: [check]
-    runs-on: ubuntu-latest
-    env:
-      unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/restore
-        id: restore
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-          cache-path: mfem/build/tests/unit/${{env.unit_tests}}
-      - name: Build Unit Tests
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: ninja -v ${{env.unit_tests}}
-      - name: Delete object files
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build/tests/unit
-        run: find . -type f -name '*.o' -delete
-      - uses: actions/upload-artifact@v4
-        with:
-          name: tests-${{inputs.par}}-${{inputs.sanitizer}}
-          path: mfem/build/tests/unit/${{env.unit_tests}}
-          if-no-files-found: error
-          retention-days: 1
-          overwrite: false
-
-  tests-unit-run:
-    needs: [tests-unit-build]
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        tag: [0, 1, 2, 3]
-    name: tests-unit-run-${{matrix.tag}}
-    env:
-      unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
-      np: ${{inputs.par && '_np=2' || ''}}
-    steps:
-      - uses: actions/checkout@v4
-      - uses: ./.github/actions/sanitize/restore
-        id: restore
-        with:
-          par: ${{inputs.par}}
-          sanitizer: ${{inputs.sanitizer}}
-          cache-path: mfem/build/tests/unit/${{env.unit_tests}}
-      - uses: actions/download-artifact@v4
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        with:
-          name: tests-${{inputs.par}}-${{inputs.sanitizer}}
-          path: mfem/build/tests/unit
-      - name: Split Unit Tests
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build/tests/unit
-        run: |
-          chmod 755 ${{env.unit_tests}}
-          ./${{env.unit_tests}} --list-test-names-only | tail -n +2 > list-test-names
-          shuf list-test-names -o list-test-names
-          split --verbose -n l/4 -d -a 1 list-test-names list-test-names-
-      - name: Cat Unit Tests ${{matrix.tag}}
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build/tests/unit
-        run: cat list-test-names-${{matrix.tag}}
-      - name: Run Unit Tests ${{matrix.tag}}
-        if: ${{steps.restore.outputs.cache-hit != 'true'}}
-        working-directory: mfem/build
-        run: |
-          ${{env.CTEST}} tests/unit -R "${{env.unit_tests}}${{env.np}}" --show-only
-          ${{env.CTEST}} tests/unit -R "${{env.unit_tests}}${{env.np}}"

.github/workflows/sanitizers.yml

@@ -1,73 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
----
-name: Sanitizers
-
-permissions:
-  actions: write
-
-on:
-  push:
-    branches: ["master", "next"]
-  pull_request:
-  workflow_dispatch:
-
-concurrency:
-  group: ${{github.workflow}}-${{github.ref}}
-  cancel-in-progress: true
-
-jobs:
-
-  # Build steps for dependencies
-  build-hypre:
-    uses: ./.github/workflows/sanitize-build-hypre.yml
-
-  build-metis:
-    uses: ./.github/workflows/sanitize-build-metis.yml
-
-  build-lsan:
-    uses: ./.github/workflows/sanitize-build-lsan.yml
-
-  build-libcxx:
-    uses: ./.github/workflows/sanitize-build-libcxx.yml
-
-  # Serial sanitizers: asan, msan, ubsan
-  seq-asan:
-    needs: [build-libcxx]
-    uses: ./.github/workflows/sanitize-tests.yml
-    with:
-      sanitizer: asan
-
-  seq-msan:
-    needs: [build-libcxx]
-    uses: ./.github/workflows/sanitize-tests.yml
-    with:
-      sanitizer: msan
-
-  seq-ubsan:
-    needs: [build-libcxx]
-    uses: ./.github/workflows/sanitize-tests.yml
-    with:
-      sanitizer: ubsan
-
-  # Parallel sanitizers: asan, ubsan
-  par-asan:
-    needs: [build-libcxx, build-hypre, build-metis]
-    uses: ./.github/workflows/sanitize-tests.yml
-    with:
-      par: true
-      sanitizer: asan
-  par-ubsan:
-    needs: [build-libcxx, build-hypre, build-metis]
-    uses: ./.github/workflows/sanitize-tests.yml
-    with:
-      par: true
-      sanitizer: ubsan

.github/workflows/stale.yml

@@ -29,47 +29,3 @@ jobs:
         operations-per-run: 500
         exempt-issue-labels: "bug,WIP,ready-for-review,in-review,in-next"
         exempt-pr-labels: "bug,WIP,ready-for-review,in-review,in-next"
-
-  # Stale action for PRs with "in-review" label.
-  stale-in-review-pr:
-
-    runs-on: ubuntu-latest
-    permissions:
-      issues: write
-      pull-requests: write
-      actions: write
-
-    steps:
-    - uses: actions/stale@v9
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 150 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
-        only-pr-labels: "in-review"
-        days-before-pr-stale: 150
-        days-before-pr-close: 30
-        days-before-issue-stale: -1
-        days-before-issue-close: -1
-        stale-pr-label: 'stale'
-        operations-per-run: 500
-
-  # Stale action for PRs with "WIP" label.
-  stale-wip-pr:
-
-    runs-on: ubuntu-latest
-    permissions:
-      issues: write
-      pull-requests: write
-      actions: write
-
-    steps:
-    - uses: actions/stale@v9
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 300 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
-        only-pr-labels: "WIP"
-        days-before-pr-stale: 300
-        days-before-pr-close: 30
-        days-before-issue-stale: -1
-        days-before-issue-close: -1
-        stale-pr-label: 'stale'
-        operations-per-run: 500

.gitignore

@@ -19,15 +19,9 @@ CMakeFiles/
 # Clangd server cache
 *.cache*
 
-#vscode settings
-/.vscode/
-
 # Backup files
 *~
 
-# clangd index
-/.cache/
-
 # Default install location
 /mfem/
 
@@ -85,17 +79,11 @@ examples/sol_u.*
 examples/sol_p.*
 examples/sol_r.*
 examples/sol_i.*
-examples/sol_z.*
 examples/ex6p-checkpoint.*
-examples/order.*
 examples/ex9.mesh
 examples/ex9-mesh.*
 examples/ex9-init.*
 examples/ex9-final.*
-examples/ex41.mesh
-examples/ex41-mesh.*
-examples/ex41-init.*
-examples/ex41-final.*
 examples/deformed.*
 examples/velocity.*
 examples/elastic_energy.*
@@ -212,23 +200,14 @@ examples/superlu/sol.*
 miniapps/adjoint/cvsRoberts_ASAi_dns
 miniapps/adjoint/adjoint_advection_diffusion
 
-miniapps/dfem/dfem-minimal-surface
-miniapps/dfem/dfem-minimal-surface-output
-
 miniapps/electromagnetics/volta
 miniapps/electromagnetics/tesla
 miniapps/electromagnetics/maxwell
 miniapps/electromagnetics/joule
-miniapps/electromagnetics/lorentz
 miniapps/electromagnetics/Volta-AMR*
 miniapps/electromagnetics/Tesla-AMR*
 miniapps/electromagnetics/Maxwell-Parallel*
-miniapps/electromagnetics/Joule_[0-9]*
-miniapps/electromagnetics/Lorentz_[0-9]*
-miniapps/electromagnetics/Lorentz.dat
-
-miniapps/fluids/schrodinger-flow/schrodinger_flow
-miniapps/fluids/schrodinger-flow/pschrodinger_flow
+miniapps/electromagnetics/Joule_*
 
 miniapps/gslib/field-diff
 miniapps/gslib/field-interp
@@ -237,7 +216,6 @@ miniapps/gslib/pfindpts
 miniapps/gslib/schwarz_ex1
 miniapps/gslib/schwarz_ex1p
 miniapps/gslib/interpolated.gf
-miniapps/gslib/particles_redist
 
 miniapps/meshing/mobius-strip
 miniapps/meshing/klein-bottle
@@ -250,7 +228,6 @@ miniapps/meshing/fit-node-position
 miniapps/meshing/trimmer
 miniapps/meshing/reflector
 miniapps/meshing/ref321
-miniapps/meshing/mesh-bounding-boxes
 miniapps/meshing/mesh-optimizer
 miniapps/meshing/pmesh-optimizer
 miniapps/meshing/pmesh-fitting
@@ -258,8 +235,6 @@ miniapps/meshing/minimal-surface
 miniapps/meshing/pminimal-surface
 miniapps/meshing/polar-nc
 miniapps/meshing/mesh-quality
-miniapps/meshing/hpref
-miniapps/meshing/phpref
 miniapps/meshing/mobius-strip.mesh
 miniapps/meshing/klein-bottle.mesh
 miniapps/meshing/toroid-*.mesh
@@ -277,15 +252,11 @@ miniapps/meshing/sol.gf
 miniapps/meshing/optimized*
 miniapps/meshing/perturbed*
 miniapps/meshing/polar-nc.mesh
-miniapps/meshing/mesh.*
-miniapps/meshing/order.*
-miniapps/meshing/sol.*
-miniapps/meshing/refined.mesh
-miniapps/meshing/bounding-box*
-miniapps/meshing/jacobian-determinant*
 
-miniapps/mtop/ParaView/
-miniapps/mtop/mtop_test_iso_elasticity
+miniapps/mtop/parheat
+miniapps/mtop/ParHeat*
+miniapps/mtop/seqheat
+miniapps/mtop/SeqHeat*
 
 miniapps/autodiff/paradiff
 miniapps/autodiff/seqadiff
@@ -293,35 +264,29 @@ miniapps/autodiff/seqtest
 miniapps/autodiff/par_example
 miniapps/autodiff/seq_example
 miniapps/autodiff/seq_test
-miniapps/autodiff/Example/*
+miniapps/autodiff/Exampl*
 
-miniapps/fluids/navier/navier_mms
-miniapps/fluids/navier/navier_kovasznay
-miniapps/fluids/navier/navier_kovasznay_vs
-miniapps/fluids/navier/navier_tgv
-miniapps/fluids/navier/navier_shear
-miniapps/fluids/navier/navier_3dfoc
-miniapps/fluids/navier/navier_turbchan
-miniapps/fluids/navier/navier_cht
-miniapps/fluids/navier/navier_bifurcation
-miniapps/fluids/navier/Navier_Bifurcation_[0-9]*
-miniapps/fluids/navier/ParaView
-miniapps/fluids/navier/tgv_out*.txt
-miniapps/fluids/navier/*_output
+miniapps/navier/navier_mms
+miniapps/navier/navier_kovasznay
+miniapps/navier/navier_kovasznay_vs
+miniapps/navier/navier_tgv
+miniapps/navier/navier_shear
+miniapps/navier/navier_3dfoc
+miniapps/navier/navier_turbchan
+miniapps/navier/navier_cht
+miniapps/navier/tgv_out*.txt
+miniapps/navier/*_output
 
 miniapps/nurbs/nurbs_ex1
 miniapps/nurbs/nurbs_ex1p
 miniapps/nurbs/nurbs_ex3
 miniapps/nurbs/nurbs_ex5
-miniapps/nurbs/nurbs_ex10
-miniapps/nurbs/nurbs_ex10p
 miniapps/nurbs/nurbs_ex11p
 miniapps/nurbs/nurbs_ex24
 miniapps/nurbs/nurbs_solenoidal
 miniapps/nurbs/nurbs_printfunc
 miniapps/nurbs/nurbs_patch_ex1
 miniapps/nurbs/nurbs_curveint
-miniapps/nurbs/nurbs_surface
 miniapps/nurbs/refined.mesh
 miniapps/nurbs/mesh.*
 miniapps/nurbs/sol_?.gf
@@ -340,14 +305,6 @@ miniapps/nurbs/nurbs_naca_cmesh
 miniapps/nurbs/naca-cmesh.mesh
 miniapps/nurbs/glvis_naca-cmesh.mesh
 miniapps/nurbs/Naca_cmesh
-miniapps/nurbs/nurbs_mesh_info
-miniapps/nurbs/k*_*.dat
-miniapps/nurbs/*-Surface.mesh
-miniapps/nurbs/*.mesh
-miniapps/nurbs/*.sol
-miniapps/nurbs/deformed.*
-miniapps/nurbs/elastic_energy.*
-miniapps/nurbs/velocity.*
 
 miniapps/performance/ex1
 miniapps/performance/ex1p
@@ -369,8 +326,6 @@ miniapps/shifted/lsf_integral
 miniapps/tools/display-basis
 miniapps/tools/load-dc
 miniapps/tools/convert-dc
-miniapps/tools/compare-dc
-miniapps/tools/gridfunction-bounds
 miniapps/tools/lor-transfer
 miniapps/tools/plor-transfer
 miniapps/tools/get-values
@@ -437,18 +392,12 @@ miniapps/spde/ParaView
 
 miniapps/tribol/contact-patch-test
 
-miniapps/diag-smoothers/abs-l1-jacobi
-miniapps/diag-smoothers/mg-abs-l1-jacobi
-
-miniapps/contact/contact
-miniapps/contact/ParaView
-
 # Unit test binary and outputs
 tests/unit/output_meshes
 tests/unit/unit_tests
 tests/unit/punit_tests
-tests/unit/gpu_unit_tests
-tests/unit/pgpu_unit_tests
+tests/unit/cunit_tests
+tests/unit/pcunit_tests
 tests/unit/sedov_tests_*
 tests/unit/psedov_tests_*
 tests/unit/tmop_pa_tests_*

.gitlab-ci.yml

@@ -9,550 +9,91 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# DESCRIPTION:
-###############################################################################
 # General GitLab pipelines configurations for supercomputers and Linux clusters
-# at Lawrence Livermore National Laboratory (LLNL).
-# This entire pipeline is LLNL-specific
-#
-# Important note: This file is a template provided by llnl/radiuss-shared-ci.
-# Remains to set variable values, change the reference to the radiuss-shared-ci
-# repo, opt-in and out optional features. The project can then extend it with
-# additional stages.
-#
-# In addition, each project should copy over and complete:
-# - .gitlab/custom-jobs-and-variables.yml
-# - .gitlab/subscribed-pipelines.yml
-#
-# The jobs should be specified in a file local to the project,
-# - .gitlab/jobs/${CI_MACHINE}.yml
-# or generated (see LLNL/Umpire for an example).
-###############################################################################
-#   MAP OF GITLAB CI
-#######################
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# File dependencies: direct, through jobs, through variables
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# .gitlab-ci.yml
-#  ├── .build-and-test  [job]
-#  │    ├── .gitlab/custom-jobs-and-variables.yml
-#  │    │    ├── .custom_job          [job]
-#  │    │    ├── .reproducer_vars     [job]
-#  │    │    ├── .report_job_success  [job]
-#  │    │    │    └── .gitlab/scripts/report_build_and_test    [script]
-#  │    │    │         ├── .gitlab/scripts/safe_create_rundir  [script]
-#  │    │    │         └── .gitlab/scripts/git_try_to_push     [script]
-#  │    │    ├── .report_job_failure  [job]
-#  │    │    │    └── .gitlab/scripts/report_build_and_test    [script]
-#  │    │    │         ├── .gitlab/scripts/safe_create_rundir  [script]
-#  │    │    │         └── .gitlab/scripts/git_try_to_push     [script]
-#  │    │    └── JOB_CMD              [var]
-#  │    │         └── tests/gitlab/build_and_test            [script]
-#  │    │              └── tests/gitlab/get_mfem_uberenv     [script]
-#  │    ├── <radiuss-shared-ci>/pipelines/matrix.yml  [conditional]
-#  │    │    ├── .on_matrix               [job]
-#  │    │    ├── .matrix_reproducer_init  [job]
-#  │    │    ├── .matrix_reproducer_vars  [job]
-#  │    │    ├── .matrix_reproducer_job   [job]
-#  │    │    ├── .matrix_job_command      [job]
-#  │    │    └── .job_on_matrix           [job]
-#  │    ├── <radiuss-shared-ci>/pipelines/dane.yml  [conditional]
-#  │    │    ├── .on_dane               [job]
-#  │    │    ├── .dane_reproducer_init  [job]
-#  │    │    ├── .dane_reproducer_vars  [job]
-#  │    │    ├── .dane_reproducer_job   [job]
-#  │    │    ├── .dane_job_command      [job]
-#  │    │    ├── .job_on_dane           [job]
-#  │    │    ├── allocate_resources     [job]
-#  │    │    └── release_resources      [job]
-#  │    ├── <radiuss-shared-ci>/pipelines/tioga.yml  [conditional]
-#  │    │    ├── .on_tioga               [job]
-#  │    │    ├── .tioga_reproducer_init  [job]
-#  │    │    ├── .tioga_reproducer_vars  [job]
-#  │    │    ├── .tioga_reproducer_job   [job]
-#  │    │    ├── .tioga_job_command      [job]
-#  │    │    ├── .job_on_tioga           [job]
-#  │    │    ├── allocate_resources      [job]
-#  │    │    └── release_resources       [job]
-#  │    ├── <artifact>/matrix-jobs.yml  [conditional, from 'generate-job-lists']
-#  │    │    ├── .gitlab/jobs/matrix.yml
-#  │    │    │    ├── .matrix_reproducer_vars      [job]
-#  │    │    │    ├── setup                        [job]
-#  │    │    │    │    └── ./tests/gitlab/build_and_test_setup  [script]
-#  │    │    │    ├── opt_mpi_cuda_gcc             [job]
-#  │    │    │    └── opt_mpi_cuda_hypre_cuda_gcc  [job]
-#  │    │    └── .gitlab/jobs/matrix-reports.yml  [used conditionally]
-#  │    │         ├── report_job_success
-#  │    │         └── report_job_failure
-#  │    ├── <artifact>/dane-jobs.yml    [conditional, from 'generate-job-lists']
-#  │    │    ├── .gitlab/jobs/dane.yml
-#  │    │    │    ├── .dane_reproducer_vars    [job]
-#  │    │    │    ├── setup                    [job]
-#  │    │    │    │    └── ./tests/gitlab/build_and_test_setup  [script]
-#  │    │    │    ├── debug_ser_gcc_10         [job]
-#  │    │    │    ├── debug_par_gcc_10         [job]
-#  │    │    │    ├── opt_ser_gcc_10           [job]
-#  │    │    │    ├── opt_par_gcc_10           [job]
-#  │    │    │    ├── opt_par_gcc_10_sundials  [job]
-#  │    │    │    ├── opt_par_gcc_10_petsc     [job]
-#  │    │    │    └── opt_par_gcc_10_pumi      [job]
-#  │    │    └── .gitlab/jobs/dane-reports.yml    [used conditionally]
-#  │    │         ├── report_job_success
-#  │    │         └── report_job_failure
-#  │    └── <artifact>/tioga-jobs.yml   [conditional, from 'generate-job-lists']
-#  │         ├── .gitlab/jobs/tioga.yml
-#  │         │    ├── .tioga_reproducer_vars  [job]
-#  │         │    ├── setup                   [job]
-#  │         │    │    └── ./tests/gitlab/build_and_test_setup  [script]
-#  │         │    └── cce_16_0_1              [job]
-#  │         └── .gitlab/jobs/tioga-reports.yml   [used conditionally]
-#  │              ├── report_job_success
-#  │              └── report_job_failure
-#  └── .gitlab/subscribed-pipelines.yml
-#       ├── .machine-check         [job]
-#       ├── generate-job-lists     [job]
-#       ├── dane-up-check          [job]
-#       ├── dane-build-and-test    [job]
-#       ├── dane-baseline          [job]
-#       │    └── .gitlab/dane-baseline.yml
-#       │         ├── .on_dane                       [job]
-#       │         ├── baselinecheck_mfem_intel_dane  [job]
-#       │         │    └── .gitlab/scripts/baseline            [script]
-#       │         ├── cleanup                        [job]
-#       │         ├── report_baseline                [job]
-#       │         │    ├── .gitlab/scripts/safe_create_rundir  [script]
-#       │         │    └── .gitlab/scripts/git_try_to_push     [script]
-#       │         ├── baselinepublish_mfem_dane      [job]
-#       │         │    └── .gitlab/scripts/rebaseline          [script]
-#       │         ├── .gitlab/custom-jobs-and-variables.yml
-#       │         │    └── <same as above: see .gitlab-ci.yml/.build-and-test>
-#       │         └── .gitlab/configs/setup-baseline.yml
-#       │              └── setup_baseline            [job]
-#       ├── tioga-up-check         [job]
-#       ├── tioga-build-and-test   [job]
-#       ├── matrix-up-check        [job]
-#       └── matrix-build-and-test  [job]
-#
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# File tree hierarchy with file contents highlights
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# In addition to the files in the MFEM repo, the Gitlab CI uses files from the
-# radiuss/radiuss-shared-ci project, see below, after the <mfem-root> tree.
-#
-# <mfem root>
-#  ├── .gitlab-ci.yml  [this file]
-#  │    ├── <jobs>
-#  │    │    └── .build-and-test
-#  │    ├── <included files>
-#  │    │    ├── .gitlab/subscribed-pipelines.yml
-#  │    │    ├── .gitlab/custom-jobs-and-variables.yml  [by ".build-and-test"]
-#  │    │    ├── <artifact>  [by ".build-and-test"]
-#  │    │    │    ├── artifact: '${CI_MACHINE}-jobs.yml'
-#  │    │    │    └── job:      'generate-job-lists'
-#  │    │    └── <external>  [by ".build-and-test"]
-#  │    │         ├── project: 'radiuss/radiuss-shared-ci'
-#  │    │         ├── ref:     'v2025.09.1'
-#  │    │         └── file:    'pipelines/${CI_MACHINE}.yml'
-#  │    └── <defined variables>
-#  │         ├── CUSTOM_CI_BUILDS_DIR
-#  │         ├── USER_CI_TOP_DIR
-#  │         ├── SHARED_REPOS_DIR
-#  │         ├── AUTOTEST_ROOT
-#  │         ├── MFEM_DATA_DIR
-#  │         ├── AUTOTEST
-#  │         ├── AUTOTEST_COMMIT
-#  │         ├── REBASELINE
-#  │         ├── GITHUB_PROJECT_NAME
-#  │         └── GITHUB_PROJECT_ORG
-#  ├── .gitlab
-#  │    ├── configs
-#  │    │    └── setup-baseline.yml
-#  │    │         ├── <jobs>
-#  │    │         │    └── setup_baseline
-#  │    │         └── <used variables>
-#  │    │              ├── MACHINE_NAME
-#  │    │              ├── REBASELINE
-#  │    │              ├── AUTOTEST
-#  │    │              ├── AUTOTEST_COMMIT
-#  │    │              ├── BUILD_ROOT
-#  │    │              ├── TPLS_REPO
-#  │    │              ├── TESTS_REPO
-#  │    │              ├── AUTOTEST_ROOT
-#  │    │              └── AUTOTEST_REPO
-#  │    ├── jobs
-#  │    │    ├── matrix-reports.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── report_job_success
-#  │    │    │    │    └── report_job_failure
-#  │    │    │    └── <used jobs>
-#  │    │    │         ├── .on_matrix
-#  │    │    │         ├── .report_job_success
-#  │    │    │         └── .report_job_failure
-#  │    │    ├── matrix.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── .matrix_reproducer_vars
-#  │    │    │    │    ├── setup
-#  │    │    │    │    ├── opt_mpi_cuda_gcc
-#  │    │    │    │    └── opt_mpi_cuda_hypre_cuda_gcc
-#  │    │    │    ├── <used jobs>
-#  │    │    │    │    ├── .reproducer_vars
-#  │    │    │    │    ├── .on_matrix
-#  │    │    │    │    └── .job_on_matrix
-#  │    │    │    ├── <included and used files>
-#  │    │    │    │    └── tests/gitlab/build_and_test_setup  [by "setup"]
-#  │    │    │    └── <defined variables>
-#  │    │    │         └── SPEC
-#  │    │    ├── dane-reports.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── report_job_success
-#  │    │    │    │    └── report_job_failure
-#  │    │    │    └── <used jobs>
-#  │    │    │         ├── .on_dane
-#  │    │    │         ├── .report_job_success
-#  │    │    │         └── .report_job_failure
-#  │    │    ├── dane.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── .dane_reproducer_vars
-#  │    │    │    │    ├── setup
-#  │    │    │    │    ├── debug_ser_gcc_10
-#  │    │    │    │    ├── debug_par_gcc_10
-#  │    │    │    │    ├── opt_ser_gcc_10
-#  │    │    │    │    ├── opt_par_gcc_10
-#  │    │    │    │    ├── opt_par_gcc_10_sundials
-#  │    │    │    │    ├── opt_par_gcc_10_petsc
-#  │    │    │    │    └── opt_par_gcc_10_pumi
-#  │    │    │    ├── <used jobs>
-#  │    │    │    │    ├── .reproducer_vars
-#  │    │    │    │    ├── .on_dane
-#  │    │    │    │    └── .job_on_dane
-#  │    │    │    ├── <included and used files>
-#  │    │    │    │    └── tests/gitlab/build_and_test_setup  [by "setup"]
-#  │    │    │    └── <defined variables>
-#  │    │    │         ├── SPEC
-#  │    │    │         └── THREADS
-#  │    │    ├── tioga-reports.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── report_job_success
-#  │    │    │    │    └── report_job_failure
-#  │    │    │    └── <used jobs>
-#  │    │    │         ├── .on_tioga
-#  │    │    │         ├── .report_job_success
-#  │    │    │         └── .report_job_failure
-#  │    │    └── tioga.yml
-#  │    │         ├── <jobs>
-#  │    │         │    ├── .tioga_reproducer_vars
-#  │    │         │    ├── setup
-#  │    │         │    └── opt_mpi_rocm_hypre_rocm
-#  │    │         ├── <used jobs>
-#  │    │         │    ├── .reproducer_vars
-#  │    │         │    ├── .on_tioga
-#  │    │         │    └── .job_on_tioga
-#  │    │         ├── <included and used files>
-#  │    │         │    └── tests/gitlab/build_and_test_setup  [by "setup"]
-#  │    │         └── <defined variables>
-#  │    │              ├── SPEC
-#  │    │              └── THREADS
-#  │    ├── scripts
-#  │    │    ├── baseline
-#  │    │    │    └── <used variables>
-#  │    │    │         ├── BASELINE_TEST
-#  │    │    │         ├── SYS_TYPE
-#  │    │    │         ├── MACHINE_NAME
-#  │    │    │         ├── CI_PROJECT_DIR
-#  │    │    │         ├── ARTIFACTS_DIR
-#  │    │    │         ├── BUILD_ROOT
-#  │    │    │         └── TPLS_DIR
-#  │    │    ├── git_try_to_push
-#  │    │    ├── rebaseline
-#  │    │    │    └── <used variables>
-#  │    │    │         ├── CI_PROJECT_DIR
-#  │    │    │         ├── ARTIFACTS_DIR
-#  │    │    │         ├── SYS_TYPE
-#  │    │    │         ├── BUILD_ROOT
-#  │    │    │         ├── MACHINE_NAME
-#  │    │    │         └── CI_PIPELINE_ID
-#  │    │    ├── report_build_and_test
-#  │    │    │    ├── <used files>
-#  │    │    │    │    ├── .gitlab/scripts/safe_create_rundir
-#  │    │    │    │    └── .gitlab/scripts/git_try_to_push
-#  │    │    │    └── <used variables>
-#  │    │    │         ├── AUTOTEST_ROOT
-#  │    │    │         ├── CI_COMMIT_REF_SLUG
-#  │    │    │         ├── CI_PROJECT_DIR
-#  │    │    │         ├── CI_PIPELINE_URL
-#  │    │    │         ├── AUTOTEST_COMMIT
-#  │    │    │         └── CI_MACHINE
-#  │    │    └── safe_create_rundir
-#  │    ├── custom-jobs-and-variables.yml
-#  │    │    ├── <jobs>
-#  │    │    │    ├── .custom_job
-#  │    │    │    ├── .reproducer_vars
-#  │    │    │    ├── .report_job_success
-#  │    │    │    └── .report_job_failure
-#  │    │    ├── <used files>
-#  │    │    │    ├── tests/gitlab/build_and_test  [in JOB_CMD]
-#  │    │    │    └── .gitlab/scripts/report_build_and_test [by .report_job_*]
-#  │    │    ├── <defined variables>
-#  │    │    │    ├── JOB_CMD
-#  │    │    │    ├── BUILD_ROOT
-#  │    │    │    ├── ALLOC_NAME
-#  │    │    │    ├── TPLS_REPO
-#  │    │    │    ├── TESTS_REPO
-#  │    │    │    ├── AUTOTEST_REPO
-#  │    │    │    ├── MFEM_DATA_REPO
-#  │    │    │    ├── ARTIFACTS_DIR: artifacts
-#  │    │    │    ├── SLURM_OVERLAP: 1
-#  │    │    │    ├── DANE_SHARED_ALLOC
-#  │    │    │    ├── DANE_JOB_ALLOC
-#  │    │    │    ├── TIOGA_SHARED_ALLOC
-#  │    │    │    ├── TIOGA_JOB_ALLOC
-#  │    │    │    └── MATRIX_JOB_ALLOC
-#  │    │    └── <used variables>
-#  │    │         ├── SPEC
-#  │    │         ├── BUILD_ROOT
-#  │    │         └── ...
-#  │    ├── dane-baseline.yml
-#  │    │    ├── <jobs>
-#  │    │    │    ├── .on_dane
-#  │    │    │    ├── baselinecheck_mfem_intel_dane
-#  │    │    │    ├── cleanup
-#  │    │    │    ├── report_baseline
-#  │    │    │    └── baselinepublish_mfem_dane
-#  │    │    ├── <included and used files>
-#  │    │    │    ├── .gitlab/custom-jobs-and-variables.yml
-#  │    │    │    ├── .gitlab/configs/setup-baseline.yml
-#  │    │    │    ├── .gitlab/scripts/rebaseline
-#  │    │    │    ├── .gitlab/scripts/baseline
-#  │    │    │    └── .gitlab/scripts/git_try_to_push
-#  │    │    ├── <defined variables>
-#  │    │    │    ├── BASELINE_TEST: baseline
-#  │    │    │    ├── MACHINE_NAME: dane
-#  │    │    │    ├── TPLS_DIR
-#  │    │    │    └── export MFEM_TEST_NP
-#  │    │    └── <used variables>
-#  │    │         ├── ON_DANE
-#  │    │         ├── AUTOTEST       [defined by .gitlab-ci.yml]
-#  │    │         ├── BUILD_ROOT     [defined by custom-jobs-and-variables.yml]
-#  │    │         ├── TPLS_DIR       [defined by this file]
-#  │    │         ├── ARTIFACTS_DIR  [defined by custom-jobs-and-variables.yml]
-#  │    │         ├── MACHINE_NAME   [defined by this file]
-#  │    │         ├── AUTOTEST_COMMIT  [defined by .gitlab-ci.yml]
-#  │    │         ├── AUTOTEST_ROOT  [defined by .gitlab-ci.yml]
-#  │    │         ├── BASELINE_TEST  [defined by this file]
-#  │    │         └── REBASELINE     [defined by .gitlab-ci.yml]
-#  │    └── subscribed-pipelines.yml
-#  │         ├── <jobs>
-#  │         │    ├── .machine-check
-#  │         │    ├── generate-job-lists
-#  │         │    ├── dane-up-check
-#  │         │    ├── dane-build-and-test
-#  │         │    ├── dane-baseline
-#  │         │    ├── tioga-up-check
-#  │         │    ├── tioga-build-and-test
-#  │         │    ├── matrix-up-check
-#  │         │    └── matrix-build-and-test
-#  │         ├── <used jobs>
-#  │         │    └── .build-and-test  [from ".gitlab-ci.yml"]
-#  │         ├── <included files>
-#  │         │    └── .gitlab/dane-baseline.yml  [by "dane-baseline"]
-#  │         └── <used variables>
-#  │              ├── GITHUB_PROJECT_ORG
-#  │              ├── GITHUB_PROJECT_NAME
-#  │              ├── AUTOTEST
-#  │              ├── AUTOTEST_COMMIT
-#  │              └── REBASELINE
-#  └── tests
-#       ├── gitlab
-#       │    ├── build_and_test
-#       │    │    ├── <builds and tests a given MFEM spec with uberenv>
-#       │    │    ├── <used files>
-#       │    │    │    ├── tests/uberenv/uberenv.py        [deps mode, cloned]
-#       │    │    │    └── tests/gitlab/get_mfem_uberenv   [deps mode]
-#       │    │    └── <used variables>
-#       │    │         ├── SYS_TYPE
-#       │    │         ├── THREADS      [num. parallel jobs to build MFEM]
-#       │    │         ├── MODULE_LIST  [modules to load]
-#       │    │         ├── CI_JOB_ID
-#       │    │         ├── USE_DEV_SHM
-#       │    │         ├── SPACK_DEBUG
-#       │    │         ├── DEBUG_MODE
-#       │    │         ├── REGISTRY_TOKEN
-#       │    │         ├── CI_REGISTRY_USER  (defined by Gitlab)
-#       │    │         ├── USER
-#       │    │         ├── CI_REGISTRY_IMAGE (defined by Gitlab)
-#       │    │         └── CI_JOB_TOKEN      (defined by Gitlab)
-#       │    ├── build_and_test_setup
-#       │    │    ├── <updates MFEM_DATA_REPO and AUTOTEST_REPO using locks>
-#       │    │    └── <used variables>
-#       │    │         ├── MFEM_DATA_REPO
-#       │    │         ├── SHARED_REPOS_DIR
-#       │    │         ├── AUTOTEST_REPO
-#       │    │         └── AUTOTEST_ROOT
-#       │    └── get_mfem_uberenv
-#       │         ├── <github.com/mfem/mfem-uberenv.git -> tests/uberenv>
-#       │         └── <defines the uberenv hash to use>
-#       └── uberenv  [cloned by tests/gitlab/get_mfem_uberenv]
-#            └── uberenv.py
-#
-# <root of radiuss/radiuss-shared-ci, ref: 'v2025.09.1'>
-#  └── pipelines
-#       ├── matrix.yml
-#       │    ├── <jobs>
-#       │    │    ├── .on_matrix
-#       │    │    ├── .matrix_reproducer_init
-#       │    │    ├── .matrix_reproducer_vars
-#       │    │    ├── .matrix_reproducer_job
-#       │    │    ├── .matrix_job_command
-#       │    │    └── .job_on_matrix
-#       │    ├── <used jobs>
-#       │    │    └── .custom_job  [from .gitlab/custom-jobs-and-variables.yml]
-#       │    └── <used variables>
-#       │         ├── ON_MATRIX
-#       │         ├── ADVANCED_JOB
-#       │         ├── ALL_TARGETS
-#       │         ├── SYS_TYPE
-#       │         ├── LLNL_SERVICE_USER
-#       │         ├── USER
-#       │         ├── GITHUB_PROJECT_NAME
-#       │         ├── GITHUB_PROJECT_ORG
-#       │         ├── MATRIX_JOB_ALLOC
-#       │         └── JOB_CMD
-#       ├── dane.yml
-#       │    ├── <jobs>
-#       │    │    ├── .on_dane
-#       │    │    ├── .dane_reproducer_init
-#       │    │    ├── .dane_reproducer_vars
-#       │    │    ├── .dane_reproducer_job
-#       │    │    ├── .dane_job_command
-#       │    │    ├── .job_on_dane
-#       │    │    ├── allocate_resources
-#       │    │    └── release_resources
-#       │    ├── <used jobs>
-#       │    │    └── .custom_job  [from .gitlab/custom-jobs-and-variables.yml]
-#       │    ├── <defined variables>
-#       │    │    └── export JOBID
-#       │    └── <used variables>
-#       │         ├── ON_DANE
-#       │         ├── ADVANCED_JOB
-#       │         ├── ALL_TARGETS
-#       │         ├── SYS_TYPE
-#       │         ├── LLNL_SERVICE_USER
-#       │         ├── USER
-#       │         ├── GITHUB_PROJECT_NAME
-#       │         ├── GITHUB_PROJECT_ORG
-#       │         ├── DANE_JOB_ALLOC
-#       │         ├── JOB_CMD
-#       │         ├── JOBID
-#       │         ├── ALLOC_NAME
-#       │         └── DANE_SHARED_ALLOC
-#       └── tioga.yml
-#            ├── <jobs>
-#            │    ├── .on_tioga
-#            │    ├── .tioga_reproducer_init
-#            │    ├── .tioga_reproducer_vars
-#            │    ├── .tioga_reproducer_job
-#            │    ├── .tioga_job_command
-#            │    ├── .job_on_tioga
-#            │    ├── allocate_resources
-#            │    └── release_resources
-#            ├── <used jobs>
-#            │    └── .custom_job  [from .gitlab/custom-jobs-and-variables.yml]
-#            ├── <defined variables>
-#            │    └── PROXY
-#            └── <used variables>
-#                 ├── ON_TIOGA
-#                 ├── ADVANCED_JOB
-#                 ├── ALL_TARGETS
-#                 ├── SYS_TYPE
-#                 ├── LLNL_SERVICE_USER
-#                 ├── USER
-#                 ├── GITHUB_PROJECT_NAME
-#                 ├── GITHUB_PROJECT_ORG
-#                 ├── TIOGA_JOB_ALLOC
-#                 ├── JOB_CMD
-#                 ├── PROXY
-#                 ├── ALLOC_NAME
-#                 └── TIOGA_SHARED_ALLOC
+# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
+# LLNL-specific!
+
+include:
+  - project: 'lc-templates/id_tokens'
+    file: 'id_tokens.yml'
+
+# The pipeline is divided into stages. Usually, jobs in a given stage wait for
+# the preceding stages to complete before to start. However, we sometimes use
+# the "needs" keyword and express the DAG of jobs for more efficiency.
+# - We use setup and setup_baseline phases to download content outside of mfem
+#   directory.
+# - Allocate/Release is where ruby resource are allocated/released once for all.
+# - Build and Test is where we build and MFEM for multiple toolchains.
+# - Baseline_checks gathers baseline-type test suites execution
+# - Baseline_publish, only available on master, allows to update baseline
+#   results
+stages:
+  - sub-pipelines
 
-###############################################################################
-# We define the following GitLab pipeline variables:
 variables:
-##### LC GITLAB CONFIGURATION
   CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
-
-##### PROJECT VARIABLES
   USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
   SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
   AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
+  # MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
+  # used in '.gitlab/configs/<machine>-config.yml':
   MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
-# AUTOTEST: enable (ON/YES) or disable (any other value) test reporting. See
-# also AUTOTEST_COMMIT.
-  AUTOTEST: "OFF"
-# AUTOTEST_COMMIT: used only when AUTOTEST is set to ON/YES.
-# * If AUTOTEST_COMMIT is set to ON/YES, reporting jobs will commit their
-#   files to the MFEM/autotest repo.
-# * If AUTOTEST_COMMIT is NOT set to ON/YES, reporting jobs will NOT commit
-#   their files to the MFEM/autotest repo. Instead they will just show the
-#   contents of the report files and remove them.
-  AUTOTEST_COMMIT: "ON"
-# REBASELINE:
+
 # Defines the default choice for updating the saved baseline results. By default
 # the baseline can only be updated from the master branch. This variable offers
 # the option to manually ask for rebaselining from another branch if necessary.
-  REBASELINE: "OFF"
+  REBASELINE: "NO"
+  AUTOTEST: "NO"
+  # AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
+  # * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
+  #   files to the MFEM/autotest repo.
+  # * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
+  #   files to the MFEM/autotest repo. Instead they will just show the contents
+  #   of the report files and remove them.
+  AUTOTEST_COMMIT: "YES"
 
-##### SHARED_CI CONFIGURATION
-# Required information about GitHub repository
-  GITHUB_PROJECT_NAME: "mfem"
-  GITHUB_PROJECT_ORG: "MFEM"
-# Override the pattern describing branches that will skip the "draft PR filter
-# test".  Add protected branches here. See default value in
-# preliminary-ignore-draft-pr.yml.
-#  ALWAYS_RUN_PATTERN: ""
-
-###############################################################################
-##### High level stages
-# We organize the test-pipelines stage with sub-pipelines. Each sub-pipeline
-# corresponds to a test batch on a given machine.
-stages:
-  - prerequisites
-  - test-pipelines
-
-###############################################################################
-# Template for jobs triggering a build-and-test sub-pipeline:
-.build-and-test:
-  stage: test-pipelines
+# Trigger subpipelines:
+ruby-build-and-test:
+  stage: sub-pipelines
   variables:
-    # Explicitly pass down values that are not always propagated to child
-    # pipelines, e.g. when a variable is set in the "Settings -> CI" web
-    # interface (project variables).
-    # Note: in some cases, this does not work as expected, e.g. when the
-    # variable is not re-defined in the web interface; in such cases, the child
-    # pipeline gets a definition like '${AUTOTEST}', i.e. it behaves as if
-    # AUTOTEST is undefined, even though there is a default value in
-    # .gitlab-ci.yml.
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
     AUTOTEST: "${AUTOTEST}"
     AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
   trigger:
-    include:
-      - local: '.gitlab/custom-jobs-and-variables.yml'
-      - project: 'radiuss/radiuss-shared-ci'
-        ref: 'v2025.09.1'
-        file: 'pipelines/${CI_MACHINE}.yml'
-      - artifact: '${CI_MACHINE}-jobs.yml'
-        job: 'generate-job-lists'
+    include: .gitlab/ruby-build-and-test.yml
     strategy: depend
-    forward:
-      pipeline_variables: true
 
-###############################################################################
-include:
-  # Sets ID tokens for every job using `default:`
-  - project: 'lc-templates/id_tokens'
-    file: 'id_tokens.yml'
-  # [Optional] checks preliminary to running the actual CI test
-  #- project: 'radiuss/radiuss-shared-ci'
-  #  ref: 'v2025.09.1'
-  #  file: 'preliminary-ignore-draft-pr.yml'
-  # pipelines subscribed by the project
-  - local: '.gitlab/subscribed-pipelines.yml'
+ruby-baseline:
+  stage: sub-pipelines
+  variables:
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
+    REBASELINE: "${REBASELINE}"
+    AUTOTEST: "${AUTOTEST}"
+    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
+  trigger:
+    include: .gitlab/ruby-baseline.yml
+    strategy: depend
+
+lassen-build-and-test:
+  stage: sub-pipelines
+  variables:
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
+    AUTOTEST: "${AUTOTEST}"
+    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
+  trigger:
+    include: .gitlab/lassen-build-and-test.yml
+    strategy: depend
+
+corona-build-and-test:
+  stage: sub-pipelines
+  variables:
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
+    AUTOTEST: "${AUTOTEST}"
+    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
+  trigger:
+    include: .gitlab/corona-build-and-test.yml
+    strategy: depend

.gitlab/README.md

@@ -15,18 +15,18 @@ and nightly testing on GitLab.
 
 ## Top level
 
-The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo. This
-file only defines three stages, a prerequisites one, and two main stages in
-which we trigger several sub-pipelines.
+The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo.
+This file only defines one stage, in which we trigger several
+sub-pipelines.
 
 We use sub-pipelines to isolate the test for one combination of `machine`
 and `test type`.
 
 Machines typically include:
 
-* Dane: Intel Sapphire Rapids
-* Matrix: Intel Sapphire Rapids + Nvidia H100 GPU
-* Tioga: AMD MI250X GPU
+* Ruby: 2nd Gen Intel Xeon (Cascade Lake)
+* Lassen: Power9 + Nvidia GPU
+* Corona: AMD GPU
 
 Test types include:
 
@@ -39,31 +39,9 @@ altering the scheduling, execution and displaying of the others.
 
 ## Sub-pipelines
 
-### build-and-test
-
-The build-and-test sub-pipelines leverage RADIUSS Shared CI to share most of
-the CI implementation. RADIUSS Shared CI provides a shared CI infrastructure
-vetted on most LC systems of interest and efficiently leveraging each machine
-scheduler to increase CI throughput. The maintenance of RADIUSS Shared CI is
-shared among several RADIUSS projects.
-
-Jobs for the build-and-test sub-pipelines are defined in the jobs directory.
-Because build-and-test jobs leverage Uberenv and Spack to build the
-dependencies automatically, the jobs essentially consists in a `spack spec`
-defined in the jobs files, and some scheduling parameters defined in the
-`.gitlab/custom-jobs-and-variables.yml` file.
-
-Build-and-test jobs all run the `tests/gitlab/build_and_test` script.
-
-The build-and-test pipelines are controlled by the
-`.gitlab/subscribed-pipelines.yml` which defines which machines to run on and
-implements additional features like machine availability check, and job list
-generation.
-
-### baseline
-
-Baseline sub-pipelines are described by files with names reflecting the
-machine it runs on, e.g. `dane-baseline`.
+Each file is this directory is the root configuration file for one
+sub-pipeline. The naming reflects the corresponding couple (`machine`,
+`test_type`).
 
 Those files define the *stages* and the *jobs* for the sub-pipeline. They
 also contain any configuration that cannot be shared. For the most part
@@ -85,11 +63,11 @@ usage function. This should be improved.
 
 # More testing
 
-## Adding a new target to a build-and-test pipeline
+## Adding a new target to a build_and_test pipeline
 
-`build-and-test` pipelines rely on Spack to install dependencies. Spack is
+`build_and_test` pipelines rely on Spack to install dependencies. Spack is
 driven by Uberenv which helps freezing Spack configuration: the goal being to
-point to a specific commit in Spack and isolate its configuration so that it is
+point to specific commit in Spack and isolate its configuration so that it is
 not influenced by the user environment. More documentation about this can be
 found in `tests/gitlab`.
 
@@ -98,13 +76,13 @@ with a spack spec of MFEM, within the limits permitted by the MFEM spack
 package.
 
 In any build-and-test sub-pipeline a job basically consists in defining the
-spack spec to use. Adding a job on Dane for example resumes to:
+spack spec to use. Adding a job on ruby for example resumes to:
 
 ```yaml
 <job_name>:
   variables:
     SPEC: "<spack_spec>"
-  extends: .job_on_dane
+  extends: .build_and_test_on_ruby
 ```
 
 The remaining and non trivial work is to make sure this spec is working. To

.gitlab/configs/common.yml

@@ -0,0 +1,40 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+include:
+  - project: 'lc-templates/id_tokens'
+    file: 'id_tokens.yml'
+
+# We define the following GitLab pipeline variables:
+variables:
+
+# The path to the shared resource between all jobs. For example, external
+# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
+# once for all targets, so that build happen here. The BUILD_ROOT is unique to
+# the pipeline, preventing any form of concurrency with other pipelines. This
+# also means that the BUILD_ROOT directory will never be cleaned.
+# TODO: add a clean-up mechanism
+  BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
+
+# On LLNL's ruby, there is only one allocation shared among jobs in order to
+# save time and resource. This allocation has to be uniquely named so that we
+# are sure to retrieve it.
+  ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
+
+# Git repositories used in the pipeline
+  TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
+  TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
+  AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
+  MFEM_DATA_REPO: https://github.com/mfem/data.git
+
+# Directory used to place artifacts.
+  ARTIFACTS_DIR: artifacts
+  SLURM_OVERLAP: 1

.gitlab/configs/corona-config.yml

@@ -0,0 +1,59 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# GitLab pipeline configuration for the Corona machine at LLNL
+variables:
+  MACHINE_NAME: corona
+
+.on_corona:
+  tags:
+    - shell
+    - corona
+  rules:
+    # Don't run corona jobs if...
+    # Note: This makes corona an "opt-in" machine. To activate builds on corona
+    # for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
+    # "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
+    # pipeline there.
+    - if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
+      when: never
+    # Don't run autotest update if...
+    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
+      when: never
+    # Report success on success status
+    - if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
+      when: on_success
+    # Report failure on failure status
+    - if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
+      when: on_failure
+    # Always release resource
+    - if: '$CI_JOB_NAME =~ /release_resource/'
+      when: always
+    # Always cleanup
+    - if: '$CI_JOB_NAME =~ /cleanup/'
+      when: always
+    # Default is to run if previous stage succeeded
+    - when: on_success
+
+# Spack helped builds
+# Generic corona build job, extending build script
+.build_and_test_on_corona:
+  extends: [.on_corona]
+  stage: build_and_test
+  script:
+    # THREADS is used by 'tests/gitlab/build_and_test', run below
+    - export THREADS=12
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - echo ${MFEM_DATA_DIR}
+    - echo ${SPEC}
+    - srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data

.gitlab/configs/lassen-config.yml

@@ -0,0 +1,48 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# GitLab pipelines configurations for the Lassen machine at LLNL
+variables:
+  MACHINE_NAME: lassen
+
+.on_lassen:
+  tags:
+    - shell
+    - lassen
+  rules:
+    - if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
+      when: never
+    # Don't run autotest update if...
+    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
+      when: never
+    # Report success on success status
+    - if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
+      when: on_success
+    # Report failure on failure status
+    - if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
+      when: on_failure
+    # Always cleanup
+    - if: '$CI_JOB_NAME =~ /cleanup/'
+      when: always
+    - when: on_success
+
+# Lassen uses a different job scheduler (spectrum lsf) that does not allow
+# pre-allocation the same way slurm does.  We use the pci queue on lassen
+# to speed-up the allocation.
+.build_and_test_on_lassen:
+  extends: [.on_lassen]
+  stage: build_and_test
+  script:
+    - echo ${MFEM_DATA_DIR}
+    - echo ${SPEC}
+    # Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
+    - lalloc 1 -W 45 -q pci --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+  needs: [setup]

.gitlab/configs/report-build-and-test.yml

@@ -0,0 +1,77 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# Jobs report
+.report_job_success:
+  script:
+    - echo ${MACHINE_NAME}
+    - echo ${AUTOTEST}
+    - echo ${AUTOTEST_COMMIT}
+    - echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
+    - cd ${AUTOTEST_ROOT}
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
+        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/autotest.lock'"
+        date
+        # Report SUCCESS while holding the file lock on 'autotest.lock'.
+        # The next script uses the following environment variables:
+        # - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
+        # - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
+        # It also calls the script '.gitlab/scripts/safe_create_rundir'.
+        ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
+        err=$?
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> autotest.lock
+
+.report_job_failure:
+  script:
+    - echo ${MACHINE_NAME}
+    - echo ${AUTOTEST}
+    - echo ${AUTOTEST_COMMIT}
+    - echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
+    - cd ${AUTOTEST_ROOT}
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
+        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/autotest.lock'"
+        date
+        # Report FAILURE while holding the file lock on 'autotest.lock'.
+        # The next script uses the following environment variables:
+        # - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
+        # - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
+        # It also calls the script '.gitlab/scripts/safe_create_rundir'.
+        ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
+        err=$?
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> autotest.lock

.gitlab/configs/ruby-config.yml

@@ -0,0 +1,55 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# GitLab pipelines configurations for the Ruby machine at LLNL
+variables:
+  MACHINE_NAME: ruby
+
+.on_ruby:
+  tags:
+    - shell
+    - ruby
+  rules:
+    # Don't run ruby jobs if...
+    - if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_RUBY == "OFF"'
+      when: never
+    # Don't run autotest update if...
+    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
+      when: never
+    # Report success on success status
+    - if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
+      when: on_success
+    # Report failure on failure status
+    - if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
+      when: on_failure
+    # Always release resource
+    - if: '$CI_JOB_NAME =~ /release_resource/'
+      when: always
+    # Always cleanup
+    - if: '$CI_JOB_NAME =~ /cleanup/'
+      when: always
+    # Default is to run if previous stage succeeded
+    - when: on_success
+
+# Spack helped builds
+# Generic ruby build job, extending build script
+.build_and_test_on_ruby:
+  extends: [.on_ruby]
+  stage: build_and_test
+  script:
+    # THREADS is used by 'tests/gitlab/build_and_test', run below
+    - export THREADS=16
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - echo ${MFEM_DATA_DIR}
+    - echo ${SPEC}
+    - srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data

.gitlab/configs/setup-baseline.yml

@@ -18,7 +18,7 @@
 setup_baseline:
   tags:
     - shell
-    - dane
+    - ruby
   stage: setup
   variables:
     GIT_STRATEGY: none

.gitlab/configs/setup-build-and-test.yml

@@ -0,0 +1,90 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
+# script then symlinks the repo to the parent directory of the MFEM source
+# directory. Unit tests that depend on the mfem/data repo will then detect that
+# this directory is present and be enabled.
+setup:
+  tags:
+    - shell
+    - ruby
+  stage: setup
+  variables:
+    GIT_STRATEGY: none
+  script:
+    #
+    # Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
+    # and '.gitlab/configs/<machine>-config.yml'
+    #
+    - echo "MACHINE_NAME = ${MACHINE_NAME}"
+    - echo "AUTOTEST = ${AUTOTEST}"
+    - echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
+    - echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
+    - mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
+    - command -v flock || echo "Required command 'flock' not found"
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
+        # try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
+        # try every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/mfem-data.lock'"
+        date
+        # clone/update the mfem/data repo while holding the file lock on
+        # 'mfem-data.lock'
+        err=0
+        if [[ ! -d "mfem-data" ]]; then
+          git clone ${MFEM_DATA_REPO} "mfem-data"
+        else
+          cd "mfem-data" && git pull && cd ..
+        fi || err=1
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> mfem-data.lock
+    #
+    # Setup ${AUTOTEST_ROOT}/autotest:
+    #
+    - echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
+    - mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
+        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/autotest.lock'"
+        date
+        # clone/update the autotest repo while holding the file lock on
+        # 'autotest.lock'
+        err=0
+        if [[ ! -d "autotest" ]]; then
+          git clone ${AUTOTEST_REPO}
+        else
+          cd autotest && git pull && cd ..
+        fi || err=1
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> autotest.lock

.gitlab/corona-build-and-test.yml

@@ -0,0 +1,67 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+stages:
+  - setup
+  - allocate_resource
+  - build_and_test
+  - release_resource_and_report
+
+# Slurm shared allocation
+allocate_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_corona
+  stage: allocate_resource
+  script:
+    - echo ${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --partition=mi60 --time=45 --no-shell --job-name=${ALLOC_NAME}
+  timeout: 6h
+  needs: [setup]
+
+# Build and test jobs, simply provide a spec
+rocm_gcc_8.3.1:
+  variables:
+    SPEC: "@develop%gcc@8.3.1+rocm amdgpu_target=gfx906"
+  extends: .build_and_test_on_corona
+  needs: [allocate_resource]
+
+# Release slurm allocation
+release_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_corona
+  stage: release_resource_and_report
+  script:
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - ([[ -n "${JOBID}" ]] && scancel ${JOBID})
+  needs: [rocm_gcc_8.3.1]
+
+# Jobs report
+report_job_success:
+  stage: release_resource_and_report
+  extends:
+    - .on_corona
+    - .report_job_success
+
+report_job_failure:
+  stage: release_resource_and_report
+  extends:
+    - .on_corona
+    - .report_job_failure
+
+include:
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/corona-config.yml
+  - local: .gitlab/configs/setup-build-and-test.yml
+  - local: .gitlab/configs/report-build-and-test.yml

.gitlab/custom-jobs-and-variables.yml

@@ -1,132 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-include:
-  - project: 'lc-templates/id_tokens'
-    file: 'id_tokens.yml'
-
-# We define the following GitLab pipeline variables:
-variables:
-# Set the build-and-test command.
-# Nested variables are allowed and useful to customize the job command. We
-# protect variables with quotes so that their value may remain a string even if
-# they contain whitespaces.
-  JOB_CMD:
-    value: tests/gitlab/build_and_test --spec \"${SPEC}\" --data-dir ${MFEM_DATA_DIR} --data
-# The path to the shared resource between all jobs in the 'dane-baseline'
-# pipeline. For example, external repositories like 'tests' and 'tpls' are
-# cloned here. Also, 'tpls' is built once for all targets, so that build happens
-# here. The BUILD_ROOT is unique to the pipeline, preventing any form of
-# concurrency with other pipelines. This directory is removed by the 'cleanup'
-# stage in the 'dane-baseline' pipeline.
-  BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${CI_MACHINE}-pipeline-${CI_PIPELINE_ID}
-
-# On LLNL's dane and tioga, the 'build-and-test' pipelines creates only one
-# allocation shared among jobs in the pipeline in order to save time and
-# resources. This allocation has to be uniquely named so that we are sure to
-# retrieve it and avoid collisions.
-  ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
-
-# Git repositories used in the pipelines:
-# - TPLS_REPO and TESTS_REPO are used only by the 'dane-baseline' pipeline
-# - AUTOTEST_REPO is used by all pipelines
-# - MFEM_DATA_REPO is used only by the 'build-and-test' pipelines
-  TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
-  TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
-  AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
-  MFEM_DATA_REPO: https://github.com/mfem/data.git
-
-# Directory used to place artifacts:
-# - ARTIFACTS_DIR is only used by the 'dane-baseline' pipeline
-  ARTIFACTS_DIR: artifacts
-  SLURM_OVERLAP: 1
-
-# Dane
-# Arguments for top level allocation
-  DANE_SHARED_ALLOC: "--exclusive --reservation=ci --time=60 --nodes=1"
-# Arguments for job level allocation
-# Note: We repeat the reservation, necessary when jobs are manually re-triggered.
-  DANE_JOB_ALLOC: "--reservation=ci --overlap --nodes=1"
-
-# Tioga
-# Arguments for top level allocation
-  TIOGA_SHARED_ALLOC: "--queue=pci --exclusive --time-limit=45m --nodes=1"
-# Arguments for job level allocation
-  TIOGA_JOB_ALLOC: "--nodes=1 --begin-time=+5s"
-
-# Matrix
-# Arguments for top level allocation
-  MATRIX_SHARED_ALLOC: "-p pdebug --exclusive --time=45 --nodes=1 -G 4"
-# Arguments for job level allocation
-# Note: We repeat the reservation, necessary when jobs are manually re-triggered.
-  MATRIX_JOB_ALLOC: "--overlap --nodes=1"
-
-# Configuration shared by build and test jobs specific to this project.
-# Not all configuration can be shared. Here projects can fine tune the
-# CI behavior.
-# See Umpire for an example (export junit test reports).
-.custom_job:
-  artifacts:
-    reports:
-
-# Note: this part is not used by the 'dane-baseline' pipeline.
-# FIXME: BUILD_ROOT, TPLS_REPO, TESTS_REPO are not needed here.
-#        Also, the definition of SHARED_REPOS_DIR is wrong.
-.reproducer_vars:
-  script:
-    - |
-      echo -e "
-      # Variables \n
-      export SPEC=\"${SPEC//\"/\\\"}\" \n
-      # Directories \n
-      export BUILD_ROOT=\"\${working_dir}\" \n
-      export SHARED_REPOS_DIR=\"\${BUILD_ROOT}/..\" \n
-      export MFEM_DATA_DIR=\"\${SHARED_REPOS_DIR}/mfem-data\" \n
-      # Repositories \n
-      export TPLS_REPO=\"${TPLS_REPO//\"/\\\"}\" \n
-      export TESTS_REPO=\"${TESTS_REPO//\"/\\\"}\" \n
-      export AUTOTEST_REPO=\"${AUTOTEST_REPO//\"/\\\"}\" \n
-      export MFEM_DATA_REPO=\"${MFEM_DATA_REPO//\"/\\\"}\" \n
-      # Setup directories \n
-      ./tests/gitlab/build_and_test_setup \n
-      # Using the CI build cache is optional and requires a token. Set it like so: \n
-      # export REGISTRY_TOKEN=\"<your token here>\" \n"
-      #
-
-# Jobs report
-.report_job_success:
-  script:
-    - ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test SUCCESS
-  rules:
-    - when: on_success
-
-.report_job_failure:
-  script:
-    - ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test FAILURE
-  rules:
-    - when: on_failure
-
-# Keep the following for debugging purposes: renaming this job from
-# '.show_variables' to 'show_variables' will insert this debug job at the
-# beginning of all child pipelines.
-.show_variables:
-  tags: [shell, oslic]
-  variables:
-    GIT_STRATEGY: none
-  stage: .pre
-  script:
-    - |
-      echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
-      echo "AUTOTEST=${AUTOTEST}"
-      echo "AUTOTEST_COMMIT=${AUTOTEST_COMMIT}"
-      echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
-      # Fail the job on purpose to prevent the rest of the pipeline from running
-      false

.gitlab/jobs/dane-reports.yml

@@ -1,19 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Jobs report
-report_job_success:
-  extends: [.on_dane, .report_job_success]
-  stage: jobs-stage-3
-
-report_job_failure:
-  extends: [.on_dane, .report_job_failure]
-  stage: jobs-stage-3

.gitlab/jobs/dane.yml

@@ -1,87 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Override reproducer section to define MFEM specific variables.
-.dane_reproducer_vars:
-  script:
-    - !reference [.reproducer_vars, script]
-
-# TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY
-#       cannot be "none" anymore).
-
-# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
-# script then symlinks the repo to the parent directory of the MFEM source
-# directory. Unit tests that depend on the mfem/data repo will then detect that
-# this directory is present and be enabled.
-setup:
-  extends: .on_dane
-  stage: jobs-stage-1
-  script:
-    - ./tests/gitlab/build_and_test_setup
-
-
-########################
-# Overridden shared jobs
-########################
-# When using shared jobs, we can duplicate them here to override description and
-# add necessary changes.
-# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
-# the comparison with the original job is easier.
-
-
-############
-# Extra jobs
-############
-# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
-# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
-# describe the spec here.
-
-.mfem_job_on_dane:
-  extends: .job_on_dane
-  stage: jobs-stage-2
-  variables:
-    # Dane has 224 threads/node and we run 7 separate jobs: 224=7*32
-    THREADS: 28
-
-debug_ser_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +debug~mpi"
-
-debug_par_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +debug+mpi"
-
-opt_ser_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 ~mpi"
-
-opt_par_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1"
-
-opt_par_gcc_10_sundials:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +sundials"
-
-opt_par_gcc_10_petsc:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
-
-opt_par_gcc_10_pumi:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +pumi"

.gitlab/jobs/matrix-reports.yml

@@ -1,19 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Jobs report
-report_job_success:
-  extends: [.on_matrix, .report_job_success]
-  stage: jobs-stage-3
-
-report_job_failure:
-  extends: [.on_matrix, .report_job_failure]
-  stage: jobs-stage-3

.gitlab/jobs/matrix.yml

@@ -1,65 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Override reproducer section to define UMPIRE specific variables.
-.matrix_reproducer_vars:
-  script:
-    - !reference [.reproducer_vars, script]
-
-#TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY cannot be "none" anymore).
-
-# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
-# script then symlinks the repo to the parent directory of the MFEM source
-# directory. Unit tests that depend on the mfem/data repo will then detect that
-# this directory is present and be enabled.
-setup:
-  extends: .on_matrix
-  stage: jobs-stage-1
-  script:
-    - ./tests/gitlab/build_and_test_setup
-
-
-########################
-# Overridden shared jobs
-########################
-# When using shared jobs , we can duplicate them here to override description and add necessary changes.
-# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
-# the comparison with the original job is easier.
-
-
-############
-# Extra jobs
-############
-# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
-# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
-# describe the spec here.
-
-.mfem_job_on_matrix:
-  extends: .job_on_matrix
-  stage: jobs-stage-2
-  variables:
-    # We run 2 jobs on 1 node that has 112 threads
-    THREADS: 48
-    # These modules need to be consistent with the uberenv configurations:
-    MODULE_LIST: "gcc/10.3.1-magic cuda/12.9.1"
-
-allocate_resources:
-  timeout: 4h
-
-opt_mpi_cuda_gcc:
-  extends: .mfem_job_on_matrix
-  variables:
-    SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90"
-
-opt_mpi_cuda_hypre_cuda_gcc:
-  extends: .mfem_job_on_matrix
-  variables:
-    SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90 ^hypre+cuda"

.gitlab/jobs/tioga-reports.yml

@@ -1,20 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Jobs report
-report_job_success:
-  extends: [.on_tioga, .report_job_success]
-  stage: jobs-stage-3
-
-report_job_failure:
-  extends: [.on_tioga, .report_job_failure]
-  stage: jobs-stage-3
-

.gitlab/jobs/tioga.yml

@@ -1,70 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Override reproducer section to define UMPIRE specific variables.
-.tioga_reproducer_vars:
-  script:
-    - !reference [.reproducer_vars, script]
-
-#TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY cannot be "none" anymore).
-
-# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
-# script then symlinks the repo to the parent directory of the MFEM source
-# directory. Unit tests that depend on the mfem/data repo will then detect that
-# this directory is present and be enabled.
-setup:
-  extends: .on_tioga
-  stage: jobs-stage-1
-  script:
-    - ./tests/gitlab/build_and_test_setup
-
-########################
-# Overridden shared jobs
-########################
-# When using shared jobs , we can duplicate them here to override description and add necessary changes.
-# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
-# the comparison with the original job is easier.
-
-
-############
-# Extra jobs
-############
-# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
-# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
-# describe the spec here.
-
-# Build and test jobs, simply provide a spec
-
-#.tioga_job_command:
-#  script:
-#    - echo PROXY="${PROXY}"
-#    - echo TIOGA_JOB_ALLOC="${TIOGA_JOB_ALLOC}"
-#    - "printf '#!/bin/bash\n%s\n' \"${JOB_CMD}\" > flux_script.sh"
-#    - cat flux_script.sh
-#    - ${PROXY} flux watch $( ${PROXY} flux batch -o output.stdout.type=kvs ${TIOGA_JOB_ALLOC} flux_script.sh )
-#    - rm -f flux_script.sh
-
-.mfem_job_on_tioga:
-  extends: .job_on_tioga
-  stage: jobs-stage-2
-  variables:
-    # We run 1 job on 1 node that has 64 threads
-    THREADS: 64
-
-opt_mpi_rocm_hypre_rocm:
-  extends: .mfem_job_on_tioga
-  variables:
-    SPEC: "%rocmcc@=6.3.1 +rocm amdgpu_target=gfx90a ^hypre+rocm"
-
-# cce_16_0_1:
-#   extends: .mfem_job_on_tioga
-#   variables:
-#     SPEC: "%cce@=16.0.1"

.gitlab/lassen-build-and-test.yml

@@ -0,0 +1,44 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+stages:
+  - setup
+  - build_and_test
+  - report
+
+opt_mpi_cuda_gcc:
+  variables:
+    SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70"
+  extends: .build_and_test_on_lassen
+
+opt_mpi_cuda_hypre_cuda_gcc:
+  variables:
+    SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
+  extends: .build_and_test_on_lassen
+
+# Jobs report
+report_job_success:
+  stage: report
+  extends:
+    - .on_lassen
+    - .report_job_success
+
+report_job_failure:
+  stage: report
+  extends:
+    - .on_lassen
+    - .report_job_failure
+
+include:
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/lassen-config.yml
+  - local: .gitlab/configs/setup-build-and-test.yml
+  - local: .gitlab/configs/report-build-and-test.yml

.gitlab/ruby-baseline.yml

@@ -11,7 +11,6 @@
 
 variables:
   BASELINE_TEST: baseline
-  MACHINE_NAME: dane
 
 stages:
   - setup
@@ -20,27 +19,8 @@ stages:
   - cleanup
   - baseline_publish
 
-.on_dane:
-  tags:
-    - shell
-    - dane
-  rules:
-    # Don't run dane jobs if...
-    - if: '$ON_DANE == "OFF"'
-      when: never
-    # Don't run autotest update if...
-    # Note: in some cases, the content of AUTOTEST can be '${AUTOTEST}', so we
-    # need to treat that value as the default value of 'OFF'.
-    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "ON" && $AUTOTEST != "YES"'
-      when: never
-    # Always cleanup
-    - if: '$CI_JOB_NAME =~ /cleanup/'
-      when: always
-    # Default is to run if previous stage succeeded
-    - when: on_success
-
-baselinecheck_mfem_intel_dane:
-  extends: [.on_dane]
+baselinecheck_mfem_intel_ruby:
+  extends: [.on_ruby]
   stage: baseline_check
   variables:
     # TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
@@ -49,13 +29,10 @@ baselinecheck_mfem_intel_dane:
     #       .gitlab/configs/setup-baseline.yml.
     TPLS_DIR: ${BUILD_ROOT}/tpls
   script:
-    - echo "AUTOTEST=$AUTOTEST"
-    - echo "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
-    - echo "AUTOTEST_ROOT=$AUTOTEST_ROOT"
     - echo ${BUILD_ROOT}
     - echo ${TPLS_DIR}
-    # Used by the tests in MFEM/tests, dane has 224 threads/node:
-    - export MFEM_TEST_NP=192
+    # Used by the tests in MFEM/tests:
+    - export MFEM_TEST_NP=48
     # The next script uses the following environment variables:
     # * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
     # * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
@@ -67,7 +44,7 @@ baselinecheck_mfem_intel_dane:
   allow_failure: true
 
 cleanup:
-  extends: .on_dane
+  extends: .on_ruby
   stage: cleanup
   variables:
     GIT_STRATEGY: none
@@ -76,7 +53,7 @@ cleanup:
     - rm -rf "${BUILD_ROOT}" || true
 
 report_baseline:
-  extends: [.on_dane]
+  extends: [.on_ruby]
   stage: baseline_report
   script:
     - echo ${MACHINE_NAME}
@@ -112,13 +89,7 @@ report_baseline:
           cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
         fi
         msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
-        # Note: in some cases, the content of AUTOTEST_COMMIT can be
-        # '${AUTOTEST_COMMIT}', so we need to treat that value as the default
-        # value of 'ON'.
-        if [[ "$AUTOTEST_COMMIT" == '${AUTOTEST_COMMIT}' ]]; then
-          AUTOTEST_COMMIT="ON"
-        fi
-        if [[ "$AUTOTEST_COMMIT" == "ON" || "$AUTOTEST_COMMIT" == "YES" ]]; then
+        if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
           git pull && \
           git add ${rundir} && \
           git commit -m "${msg}" && \
@@ -142,12 +113,12 @@ report_baseline:
         exit $err
       ) 9> autotest.lock
 
-baselinepublish_mfem_dane:
-  extends: [.on_dane]
+baselinepublish_mfem_ruby:
+  extends: [.on_ruby]
   stage: baseline_publish
   rules:
-    # - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "ON"'
-    - if: '$REBASELINE == "ON"'
+    # - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
+    - if: '$REBASELINE == "YES"'
       when: manual
   script:
     - echo ${BUILD_ROOT}
@@ -157,5 +128,6 @@ baselinepublish_mfem_dane:
     - .gitlab/scripts/rebaseline
 
 include:
-  - local: .gitlab/custom-jobs-and-variables.yml
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/ruby-config.yml
   - local: .gitlab/configs/setup-baseline.yml

.gitlab/ruby-build-and-test.yml

@@ -0,0 +1,94 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+stages:
+  - setup
+  - allocate_resource
+  - build_and_test
+  - release_resource_and_report
+
+# Allocate
+allocate_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_ruby
+  stage: allocate_resource
+  script:
+    - echo ${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
+  timeout: 6h
+
+# GitLab jobs for the Ruby machine at LLNL
+debug_ser_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1 +debug~mpi"
+  extends: .build_and_test_on_ruby
+
+debug_par_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1 +debug+mpi"
+  extends: .build_and_test_on_ruby
+
+opt_ser_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1 ~mpi"
+  extends: .build_and_test_on_ruby
+
+opt_par_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1"
+  extends: .build_and_test_on_ruby
+
+opt_par_gcc_10_sundials:
+  variables:
+    SPEC: "%gcc@10.3.1 +sundials"
+  extends: .build_and_test_on_ruby
+
+opt_par_gcc_10_petsc:
+  variables:
+    SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
+  extends: .build_and_test_on_ruby
+
+opt_par_gcc_10_pumi:
+  variables:
+    SPEC: "%gcc@10.3.1 +pumi"
+  extends: .build_and_test_on_ruby
+
+# Release
+release_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_ruby
+  stage: release_resource_and_report
+  script:
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - ([[ -n "${JOBID}" ]] && scancel ${JOBID})
+
+# Jobs report
+report_job_success:
+  stage: release_resource_and_report
+  extends:
+    - .on_ruby
+    - .report_job_success
+
+report_job_failure:
+  stage: release_resource_and_report
+  extends:
+    - .on_ruby
+    - .report_job_failure
+
+include:
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/ruby-config.yml
+  - local: .gitlab/configs/setup-build-and-test.yml
+  - local: .gitlab/configs/report-build-and-test.yml

.gitlab/scripts/baseline

@@ -14,7 +14,7 @@
 # locals
 glob_err=${BASELINE_TEST}.err
 base=${BASELINE_TEST}-${SYS_TYPE}
-if [[ "${MACHINE_NAME}" == "dane" ]]; then
+if [[ "${MACHINE_NAME}" == "ruby" ]]; then
   base="${BASELINE_TEST}-${MACHINE_NAME}"
 fi
 base_diff=${base}.diff
@@ -31,10 +31,12 @@ cd tests
 mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
 
 # run
-if [[ "${MACHINE_NAME}" == "dane" ]]; then
-  salloc --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
+if [[ "${MACHINE_NAME}" == "ruby" ]]; then
+  salloc --nodes=1 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
 elif [[ ${MACHINE_NAME} == "corona" ]]; then
   salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
+elif [[ ${MACHINE_NAME} == "lassen" ]]; then
+  lalloc 1 -q pci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
 else
   echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
   exit 1

.gitlab/scripts/rebaseline

@@ -11,7 +11,7 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# There will be collision between corona and dane baselines.
+# There will be collision between corona and ruby baselines.
 # Once the corresponding files have been generated, we can switch to machine
 # specific ref.
 ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}
@@ -21,7 +21,7 @@ PATCH_FILE=${ARTIFACT_PATH}.patch
 FULL_FILE=${ARTIFACT_PATH}.out
 DIFF_FILE=${ARTIFACT_PATH}.diff
 
-# There will be collision between corona and dane baselines.
+# There will be collision between corona and ruby baselines.
 # Once the corresponding files have been generated, we can switch to machine
 # specific ref.
 SAVED_NAME=baseline-${SYS_TYPE}.saved

.gitlab/scripts/report_build_and_test

@@ -1,118 +0,0 @@
-#!/bin/bash
-
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-function info_msg ()
-{
-  echo "[Information:] ${1}"
-}
-
-function error_msg ()
-{
-  echo "[Error:] ${1}"
-}
-
-# Perform a report while holding a lock file to prevent concurrency on
-# the destination.
-# Usage:
-# locked_clone <report_function> <lock_name>
-function locked_report ()
-{
-  if ! command -v flock
-  then
-    error_msg "Required command 'flock' not found"
-    exit 1
-  fi
-
-  info_msg "Will report ${1} while holding a lock in ${2}"
-
-  ( date; info_msg "Waiting to acquire lock on '${PWD}/${2}.lock' ..."
-    # try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
-    # try every 5 seconds; we may want to add a counter for the number of
-    # retries to interrupt a potential infinite loop
-    while ! flock -n 9; do sleep 5; done
-    date; info_msg "Acquired lock on '${PWD}/${2}.lock'"
-
-    report ${1}
-    err=$?
-
-    # sleep for a period to allow NFS to propagate the above changes;
-    # clearly, there is no guarantee that other NFS clients will see the
-    # changes even after the timeout
-    sleep 10
-    exit $err
-  ) 9> ${2}.lock
-}
-
-function report ()
-{
-  if [[ "${1}" == "SUCCESS" ]]
-  then
-    info_msg "All the ${MACHINE_NAME} jobs passed"
-    status_msg="The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL."
-  elif [[ "${1}" == "FAILURE" ]]
-  then
-    info_msg "At least one failure on ${MACHINE_NAME}"
-    status_msg="Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED."
-  else
-    error_msg "Unknown status: ${1} ... aborting"
-    exit 1
-  fi
-
-  cd ${AUTOTEST_ROOT}/autotest || \
-    { error_msg "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
-  mkdir -p ${MACHINE_NAME}
-
-  rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
-  rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
-
-  printf "%s\n" "${status_msg}" \
-    "Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
-
-  msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
-
-  if [[ "${1}" == "FAILURE" ]]
-  then
-    # Create 'autotest-email.html' to indicate failure:
-    cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
-  fi
-
-  # Note: in some cases, the content of AUTOTEST_COMMIT can be
-  # '${AUTOTEST_COMMIT}', so we need to treat that value as the default
-  # value of 'ON'.
-  if [[ "$AUTOTEST_COMMIT" == '${AUTOTEST_COMMIT}' ]]; then
-    AUTOTEST_COMMIT="ON"
-  fi
-  if [[ "$AUTOTEST_COMMIT" == "ON" || "$AUTOTEST_COMMIT" == "YES" ]]; then
-    git pull && \
-    git add ${rundir} && \
-    git commit -m "${msg}" && \
-    ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
-  else
-    for file in ${rundir}/*; do
-      echo "------------------------------"
-      echo "Content of '$file'"
-      echo "******************************"
-      cat $file
-      echo "******************************"
-    done
-    rm -rf ${rundir} || true
-  fi
-}
-
-export MACHINE_NAME=${CI_MACHINE}
-info_msg "MACHINE_NAME is ${MACHINE_NAME}"
-info_msg "AUTOTEST_ROOT is ${AUTOTEST_ROOT}"
-info_msg "AUTOTEST=$AUTOTEST"
-info_msg "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
-
-cd ${AUTOTEST_ROOT} && locked_report ${1} autotest

.gitlab/scripts/report_build_and_test_failure

@@ -0,0 +1,45 @@
+#!/bin/bash
+
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+echo "Runs if there was at least one failure on ${MACHINE_NAME}"
+
+cd ${AUTOTEST_ROOT}/autotest || \
+  { echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
+mkdir -p ${MACHINE_NAME}
+
+rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
+rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
+
+printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
+  "Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
+
+msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
+
+# Create 'autotest-email.html' to indicate failure:
+cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
+
+if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
+  git pull && \
+  git add ${rundir} && \
+  git commit -m "${msg}" && \
+  ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+else
+  for file in ${rundir}/*; do
+    echo "------------------------------"
+    echo "Content of '$file'"
+    echo "******************************"
+    cat $file
+    echo "******************************"
+  done
+  rm -rf ${rundir} || true
+fi

.gitlab/scripts/report_build_and_test_success

@@ -0,0 +1,42 @@
+#!/bin/bash
+
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+echo "Can only run if all the ${MACHINE_NAME} jobs passed"
+
+cd ${AUTOTEST_ROOT}/autotest || \
+  { echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
+mkdir -p ${MACHINE_NAME}
+
+rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
+rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
+
+printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
+  "Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
+
+msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
+
+if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
+  git pull && \
+  git add ${rundir} && \
+  git commit -m "${msg}" && \
+  ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+else
+  for file in ${rundir}/*; do
+    echo "------------------------------"
+    echo "Content of '$file'"
+    echo "******************************"
+    cat $file
+    echo "******************************"
+  done
+  rm -rf ${rundir} || true
+fi

.gitlab/subscribed-pipelines.yml

@@ -1,130 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# The template job to test whether a machine is up.
-# Expects CI_MACHINE defined to machine name.
-.machine-check:
-  stage: prerequisites
-  tags: [shell, oslic]
-  variables:
-    GIT_STRATEGY: none
-  script:
-    - |
-      if [[ $(jq '.[env.CI_MACHINE].total_nodes_up' /usr/global/tools/lorenz/data/loginnodeStatus) == 0 ]]
-      then
-        echo -e "\e[31mNo node available on ${CI_MACHINE}\e[0m"
-        false && \
-        curl --url "https://api.github.com/repos/${GITHUB_PROJECT_ORG}/${GITHUB_PROJECT_NAME}/statuses/${CI_COMMIT_SHA}" \
-             --header 'Content-Type: application/json' \
-             --header "authorization: Bearer ${GITHUB_TOKEN}" \
-             --data "{ \"state\": \"failure\", \"target_url\": \"${CI_PIPELINE_URL}\", \"description\": \"GitLab ${CI_MACHINE} down\", \"context\": \"ci/gitlab/${CI_MACHINE}\" }"
-        exit 1
-      fi
-
-###
-# Trigger a build-and-test pipeline for a machine.
-# Comment the jobs for machines you don’t need.
-###
-
-# One job to generate the job list for all the subpipelines
-generate-job-lists:
-  stage: prerequisites
-  tags: [shell, oslic]
-  variables:
-    LOCAL_JOBS_PATH: ".gitlab/jobs"
-  script:
-    - |
-      echo "AUTOTEST=$AUTOTEST"
-      echo "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
-      echo "AUTOTEST_ROOT=$AUTOTEST_ROOT"
-    - |
-      cat ${LOCAL_JOBS_PATH}/dane.yml > dane-jobs.yml
-      if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
-      then
-          cat ${LOCAL_JOBS_PATH}/dane-reports.yml >> dane-jobs.yml
-      fi
-    - |
-      cat ${LOCAL_JOBS_PATH}/matrix.yml > matrix-jobs.yml
-      if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
-      then
-          cat ${LOCAL_JOBS_PATH}/matrix-reports.yml >> matrix-jobs.yml
-      fi
-    - |
-      cat ${LOCAL_JOBS_PATH}/tioga.yml > tioga-jobs.yml
-      if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
-      then
-          cat ${LOCAL_JOBS_PATH}/tioga-reports.yml >> tioga-jobs.yml
-      fi
-  artifacts:
-    paths:
-      - dane-jobs.yml
-      - matrix-jobs.yml
-      - tioga-jobs.yml
-
-
-# DANE
-dane-up-check:
-  variables:
-    CI_MACHINE: "dane"
-  extends: [.machine-check]
-
-dane-build-and-test:
-  variables:
-    CI_MACHINE: "dane"
-  needs: [dane-up-check, generate-job-lists]
-  extends: [.build-and-test]
-
-# DANE, MFEM Specific
-dane-baseline:
-  stage: test-pipelines
-  variables:
-    # Explicitly pass down values that are not always propagated to child
-    # pipelines, e.g. when a variable is set in the "Settings -> CI" web
-    # interface (project variables).
-    # Note: in some cases, this does not work as expected, e.g. when the
-    # variable is not re-defined in the web interface; in such cases, the child
-    # pipeline gets a definition like '${AUTOTEST}', i.e. it behaves as if
-    # AUTOTEST is undefined, even though there is a default value in
-    # .gitlab-ci.yml.
-    AUTOTEST: "${AUTOTEST}"
-    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
-  trigger:
-    include: .gitlab/dane-baseline.yml
-    strategy: depend
-    forward:
-      pipeline_variables: true
-  needs: [dane-up-check]
-
-
-# TIOGA
-tioga-up-check:
-  variables:
-    CI_MACHINE: "tioga"
-  extends: [.machine-check]
-
-tioga-build-and-test:
-  variables:
-    CI_MACHINE: "tioga"
-  needs: [tioga-up-check, generate-job-lists]
-  extends: [.build-and-test]
-
-
-# Matrix
-matrix-up-check:
-  variables:
-    CI_MACHINE: "matrix"
-  extends: [.machine-check]
-
-matrix-build-and-test:
-  variables:
-    CI_MACHINE: "matrix"
-  needs: [matrix-up-check, generate-job-lists]
-  extends: [.build-and-test]

CHANGELOG

@@ -8,439 +8,159 @@
                                https://mfem.org
 
 
-Version 4.9.1 (development)
+Version 4.7.1 (development)
 ===========================
-
-Discretization improvements
----------------------------
-- Improved the gridfunction projection routines. Projections work for Scalar,
-  Vector and VectorFE, also NURBS versions. Optionally different types of
-  projections can be selected, default behaviour has not changed.
-
-Meshing improvements
---------------------
-- Improved support for 1D NURBS meshes with variable order, including using
-  the patches construct for 1D NURBS meshes.
-
-New and updated examples and miniapps
--------------------------------------
-- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
-  capability.
-
-
-Version 4.9, released on Dec 11, 2025
-=====================================
-
-Starting with this version, MFEM requires a C++17 compiler.
-
-Discretization improvements
----------------------------
-- Introduced dFEM: a new MFEM capability for Automatic Differentiation (AD) of
-  nonlinear finite element operators, based on Enzyme or dual numbers AD at
-  quadrature points. These features are part of the new mfem::future namespace
-  and some of the API can change in the future. See the new dFEM minimal surface
-  miniapp in the miniapps/dfem/ directory for illustration of dFEM's use. Using
-  Enzyme for AD in MFEM is tested with clang v19 and requires clang/LLVM built
-  with plugin support. See INSTALL for more details.
-
-- Introduced initial support for particle methods in MFEM with new classes
-  Particle, ParticleSet and ParticleVector.
-  * Particle is a convenient interface for individual particle data.
-  * ParticleSet manages and stores particle data in a struct-of-arrays form,
-    carrying particle coordinates and IDs along with an arbitrary number of
-    Vector and integer data for each particle.
-  * ParticleVector is a Vector-derived container that stores vector data for an
-    arbitrary number of particles contiguously based on specified vdim/ordering.
-  See the new particle miniapps in miniapps/gslib/ and miniapps/fluids/navier/.
-
-- Added a new miniapp and specialized AMG solver (AMGF) for optimization-based
-  contact mechanics. The miniapp solves large-scale frictionless contact using a
-  self-contained Interior Point (IP) solver, mortar-based contact constraints
-  provided by Tribol. The resulting linear systems are solved with the new AMGF
-  solver (see below). Benchmark examples include the two-block, ironing, and
-  beam-sphere problems. See the miniapps/contact/ directory.
-
-- Added support for boundary integration to the hyperbolic framework. Two new
-  classes BdrHyperbolicDirichletIntegrator and BoundaryHyperbolicFlowIntegrator
-  have been introduced for implementation of weak Dirichlet boundary conditions
-  with a general flux or for the linear case respectively.
-
-- Added a method to compute piecewise linear bounds on high-order functions on
-  tensor-product elements.
-
-- Added support for interior face integration enabling DG methods in
-  ParMixedBilinearForm, ParNonlinearForm and ParBlockNonlinearForm.
-
-- In the ParMoonolith integration, added support for variational resampling of
-  H1 vector fields.
-
-- Introduced IMEX ODE solvers based on a split-operator framework. Added
-  examples ex41 and ex41p demonstrating IMEX DG/CG discretizations of the
-  convection–diffusion equation, with ex41p using DG LOR preconditioning.
-
-Meshing improvements
---------------------
-- The TMOP kernel hierarchy has been restructured to reduce compilation time.
-  Most large kernels have been split into smaller specific kernels for each
-  metric. The directory structure has been updated with assemble, metrics, mult
-  and tools subdirectories. New kernel dispatch and specialization system has
-  also been integrated. Unit tests have been revised to ensure --all tests pass.
-
-- Introduced NC-patch NURBS meshes, which are conforming element-wise but allow
-  for nonconforming patch topology. This new mesh format supports element
-  spacing formulas for refinement, as well as local refinement factors for a
-  subset of knot vectors.
-
-- Added a new miniapp for interpolating a surface grid of points in 3D using a
-  smooth NURBS surface, that can then be sampled at arbitrary resolution while
-  staying close to the original geometry. See miniapps/nurbs/nurbs_surface.
-
-- Parallel anisotropic refinement of hexahedral meshes is now supported,
-  provided that neighboring hexahedra are not refined in conflicting directions.
-  A new ParMesh method is added to check for such conflicts, before refinement.
-
-- Added support for higher order meshes in (Par)Mesh::MakeSimplicial.
-
-Linear and nonlinear solvers
-----------------------------
-- Added FilteredSolver: a base class for solvers with filtering. It handles
-  cases where a solver performs well except in small subspaces, by adding a
-  filtering step formulated as a subspace correction.
-
-- Added AMGFSolver: a derived class of FilteredSolver, specialized for AMG with
-  Filtering (AMGF), providing robust preconditioning for linear systems arising
-  in constrained optimization problems such as frictionless contact.
-
-  Added 'GetResiduals' and 'GetFinalAbsResidualNorm' to 'HyprePCG',
-  'HypreGMRES', and 'HypreFGMRES' to get 'r' and '|r|_p'. Note that the latter
-  computes '|r|_p' from 'r' instead of returning a cached value like the
-  relative 'GetFinalResidualNorm'. These require Hypre >= 2.15.0.
-
-  Changed the default solver parameters for 'HyprePCG' to 'tol=1e-6' and
-  'max_iter=1000'. This matches the default parameters in Hypre 3.0.
-
-  Added various helper functions for querying/modifying Hypre solvers:
-  'HypreSmoother::GetType', 'HypreSmoother::GetSOROptions',
-  'HypreSmoother::GetPolyOptions', 'HypreSmoother::GetWindowParameters',
-  'HypreSmoother::IsOperatorSymmetric', 'HyprePCG::GetTol',
-  'HyprePCG::GetAbsTol', 'HyprePCG::GetMaxIter', 'HyprePCG::SetUseTwoNorm',
-  'HypreGMRES::GetTol', 'HypreGMRES::GetAbsTol', 'HypreGMRES::GetMaxIter',
-  'HypreGMRES::GetKDim', 'HypreFGMRES::GetTol', 'HypreFGMRES::GetMaxIter',
-  'HypreFGMRES::GetKDim', and 'HypreBoomerAMG::GetMaxIter'.
-
-GPU computing
--------------
-- Added the 'gpu', 'raja-gpu', and 'ceed-gpu' backend aliases/shortcuts which
-  automatically select between CUDA or HIP.
-
-- Added the option to enable GPU-aware MPI in MFEM using the environment
-  variable 'MFEM_GPU_AWARE_MPI' set to any value. Setting this environment
-  variable is an alternative to calling 'Device::SetGPUAwareMPI(true)'.
-
-- Implemented a GPU-accelerated matrix-free AMR derefinement GridFunction update
-  operator. This supports mixed geometry meshes and variable order spaces, and
-  is the default derefinement operator constructed by FiniteElementSpace::Update
-  and ParFiniteElementSpace::Update. The operator requires the finite element
-  space to be nonconforming.
-
-- Introduced MFEM_FOREACH_THREAD_DIRECT, which directly maps loop tasks to GPU
-  threads, assigning one task per thread.
-
-- The function Vector::SetSubVector(const Array<int> &, const real_t) now
-  executes on device if either the vector or the array have the device flag
-  set. This is most often used for setting constant essential BCs. A new method,
-  SetSubVectorHost, has been added for cases where host execution is always
-  needed (e.g. when the DOFs array is small).
-
-- Added GPU support in GradientGridFunction and InnerProduct Coefficient classes
-  by implementing their Project methods.
-
-- Added new method: GridFunction::GetGradients, with GPU support, for computing
-  the gradients of a GridFunction on all elements.
-
-- The CUDA-specific names used by some of the unit tests like 'cunit_tests' and
-  'pcunit_tests' were replaced by names using 'gpu' instead of 'c' (short for
-  CUDA) or 'cuda'. These tests automatically run the CUDA/HIP tests based on the
-  MFEM build configuration.
-
-New and updated examples and miniapps
--------------------------------------
-- Added the miniapps/fluids directory and moved the previous Navier and the new
-  incompressible Schrödinger flow miniapps into it.
-
-- Introduced the new Incompressible Schrödinger Flow (ISF) miniapp, which models
-  inviscid fluid dynamics by solving the linear Schrödinger equation, leveraging
-  the hydrodynamical analogy to quantum mechanics.
-
-- New particle-related miniapps:
-  * New transient Navier-Stokes fluid-particles solver NavierParticles in
-    miniapps/fluids/navier/navier_particles, for modeling tracer particles in
-    fluid flow, demonstrating use of the new ParticleSet class.
-  * New Navier miniapp, miniapps/fluids/navier/navier_bifurcation, showing the
-    use of NavierParticles in a 2D bifurcating channel flow.
-  * New FindPointsGSLIB miniapp, miniapps/gslib/particles_redist, showing
-    parallel-redistribution of particle data between MPI ranks.
-  * Particle visualization features in common/particles_extras for viewing
-    particle locations and trajectories (ParticleTrajectories) using GLVis.
-
-- Added a new miniapp (meshing/mesh-bounding-boxes) that computes the bounding
-  boxes for each element of a given mesh, and the bounds on the determinant of
-  the Jacobian of the transformation.
-
-- Added a new miniapp (tools/gridfunction-bounds) to compute piecewise linear
-  bounds on a given high-order grid function.
-
-- Added a new miniapp (electromagnetics/lorentz) which computes the trajectory
-  of a charged particle, subject to Lorentz forces, in electrostatic and/or
-  magnetostatic fields as computed by the volta or tesla miniapps.
-
-- Added miniapps to demonstrate an implementation of the absolute-value
-  l1-Jacobi preconditioners in partially assembled operators. This includes
-  Multigrid wrapper to demonstrate the effectiveness of these Jacobi-type
-  operators as smoothers. See the miniapps/diag-smoothers/ directory.
-
-- Updated the mtop miniapp with a GPU enabled forward and adjoint solver for
-  isotropic linear elasticity.
-
-Miscellaneous
--------------
-- Introduced MFEM_FETCH_TPLS CMake option to enable downloading, configuring,
-  and building of TPLs alongside MFEM (currently supported TPLs are hypre,
-  METIS, and GSLIB).
-
-- Added quadrature function support to the VisIt and Conduit data collections.
-
-- Added access to the internal parallel matrix in Par(Mixed)BilinearForm and
-  related utility methods for elimination of BCs.
-
-- FindPointsGSLIB has a new constructor that accepts the mesh object and
-  internally calls the Setup() method so users do not have to. The FreeData()
-  method has also been moved to the destructor so users do not need to manually
-  free-up the memory if the destructor is called before MPI_Finalize().
-
-- Added parallel Address Sanitizer, serial and parallel Undefined Behavior
-  Sanitizer and serial Memory Sanitizer GitHub actions tests on Ubuntu.
-
-API changes
------------
-- mfem::internal::tensor and mfem::internal::dual have been moved to
-  mfem::future::tensor and mfem::future::dual.
-
-- API addition: in class Operator, added virtual functions: AbsMult, and
-  AbsMultTranspose; in class Vector, added Abs and Pow.
-
-- ParBilinearForm::EliminateEssentialVDofsInRhs() has been deprecated in favor
-  of ParallelEliminateEssentialTDofsInRhs().
-
-
-Version 4.8, released on Apr 9, 2025
-====================================
-
-Discretization improvements
----------------------------
-- Added high-order basis functions on pyramid-shaped elements for all spaces in
-  the de Rham complex based on the paper "Orientation embedded high order shape
-  functions for the exact sequence elements of all shapes" by Fuentes, Keith,
-  Demkowicz and Nagaraj (doi.org/10.1016/j.camwa.2015.04.027). Positive basis
-  functions (Bernstein basis) for H1 and L2 on pyramids were also added.
-
-- Added support for parallel p- and hp-refinement on quad/hex meshes. For hp, we
-  currently support only isotropic refinement with L2 or H1 spaces. See the new
-  miniapps hpref and phpref in the miniapps/meshing/ directory.
-
-- Added several improvements for hyperbolic problems:
-  * Assembly of Jacobians in HyperbolicFormIntegrator
-  * Component-wise upwinded flux (ComponentwiseUpwindFlux)
-  * Average fluxes in NumericalFlux (formerly RiemannSolver) and FluxFunction
-
-- Added convenience methods to class FiniteElementSpace to directly identify all
-  degrees of freedom on the exterior faces of the domain, without referencing
-  boundary element attributes (GetExteriorVDofs and GetExteriorTrueDofs).
-
+- Refactored ALGOIM cut integration rules. The interface is unified with
+  the interface for moment based cut integration rules.
 - Altered (Par)GridFunction::Compute*Error functions to ensure they return
   non-negative values and therefore behave as "norms".
 
-- SubMesh and ParSubMesh have been extended to work on nonconforming meshes.
-  Extracting volume and exterior surface submeshes are both supported.
+Discretization improvements
+---------------------------
+- Added NURBS-based H(div) and H(curl) elements in 2D and 3D. Only on single
+  patch meshes. Only implemented for serial computations.
 
-- LinearFormIntegrator, BilinearFormIntegrator and NonlinearFormIntegrator now
-  inherit from a base class Integrator that centralizes the logic for selecting
-  quadrature rules. This includes a virtual method GetDefaultIntegrationRule,
-  which should be favored over directly defining a default integration rule in
-  the element-level assembly routines. The latter is still possible, by leaving
-  the new virtual method as its default base implementation of returning NULL.
+- Added support for boundary constraints to the hybridization class.
 
-- Added NURBS-based H(div) and H(curl) elements in 2D and 3D. Currently only for
-  single patch meshes in serial.
+- Added support for external boundary submeshes with nonconformal mesh adaptation.
 
-- Refactored ALGOIM cut integration rules. The interface is unified with the
-  interface for moment based cut integration rules.
+- Added assembly of Jacobians to `HyperbolicFormIntegrator`.
 
-- FiniteElementSpace has new methods to directly set the prolongation and
-  restriction operators to user-specified sparse matrices.
+- Added average fluxes to `NumericalFlux` (formerly `RiemannSolver`)
+  and `FluxFunction`.
 
-- Added support for H(div) spaces in class QuadratureInterpolator. Currently only
+- Added component-wise upwinded flux (`ComponentwiseUpwindFlux`).
+
+- Added support for H(div) spaces in class QuadratureInterpolator. For now, only
   (vector) VALUES, (vector) PHYSICAL_VALUES, and PHYSICAL_MAGNITUDES evaluations
-  are implemented.
-
-- Added support for boundary constraints to class Hybridization.
-
-- Added support for custom interpolation procedure in FindPointsGSLIB.
-
-- Added GSLIB-based gather-scatter operator.
+  are implemented. [PR #4669]
 
 Meshing improvements
 --------------------
-- Added support for nonuniform anisotropic mesh refinement on serial quad/hex
-  meshes with arbitrary spacing in each direction. This enables in particular
-  3:1 refinement, as demonstrated in the new meshing miniapp ref321.
+- Added native AD support for numerous TMOP metrics that didn't have first or
+  second derivative implementations.
 
-- Added capabilities for optimization and adaptation of periodic meshes with
-  TMOP. The internals of TMOP were modified so that the optimization problem is
-  always solved with respect to mesh displacements.
+- The ExodusII reader now handles pyramid and wedge element types. Mixed meshes
+  are also supported.
 
-- New convenience methods for manipulating boundary attribute markers in class
-  Mesh: MarkExternalBoundaries, MarkNamedBoundaries, UnmarkInternalBoundaries
-  and UnmarkNamedBoundaries. See Examples 1/1p and 11p for basic usage.
+- Added support for nonuniform anisotropic (nonconforming) mesh refinement with
+  arbitrary spacing in each direction, for quadrilateral (2D) and hexahedral
+  (3D) meshes. This enables in particular 3:1 refinement, as demonstrated in the
+  new meshing miniapp ref321.
 
-- Added a new method, GetExteriorFaceMarker, to the serial and parallel mesh
-  classes for identifying faces on the exterior of the mesh irrespective of
-  their presence in the list of "boundary elements".
+New and updated examples and miniapps
+-------------------------------------
+- Added miniapps to demonstrate the H(div) and H(curl) NURBS elements.
 
-- Added native AD support for computing the derivatives of numerous TMOP metrics
-  that didn't have first or second derivative implementations.
+- Added an MFEM example for the eikonal equation. This new solver is based on
+  the proximal Galerkin method introduced by Keith and Surowiec.
 
-- Added ExodusII output capability which can handle in particular pyramid and
-  wedge element types. Mixed meshes are also supported.
+- Added a new toy miniapp that animates an interesting fidget spiral cone toy.
+  See miniapps/toys/spiral.cpp.
 
-- Added InverseElementTransformation::InitGuessType::EdgeScan as an alternative
-  initial guess type. This guess type tries solving with multiple initial guesses
-  along the r/s/t=0 edges of the element until a valid solution is found or all
-  initial guess points are exhausted.
-
-- Added new convenience constructors for NURBS patches and knot vectors.
+- Added a command line option to all miniapps (`-p` or `--send-port`) for
+  specifying the GLVis server socket port (19916 by default).
 
 GPU computing
 -------------
-- Extended FindPointsGSLIB to support general field interpolation on GPUs. Note
-  that this requires that switch from gslib v1.0.7 to v1.0.9.
-
 - Added support for GPU-accelerated batched linear algebra (using cuBLAS,
   hipBLAS, MAGMA, or native MFEM functionality) through the BatchedLinAlg class.
 
 - A new GPU kernel dispatch mechanism was introduced. Users can instantiate
   specialized kernels for specific combinations of (for example) polynomial
-  degree and number of quadrature points using method AddSpecialization in
-  classes DiffusionIntegrator and MassIntegrator (this functionality may be
-  added to more integrators in the future).
+  degree and number of quadrature points using
+  `DiffusionIntegrator::AddSpecialization` and
+  `MassIntegrator::AddSpecialization` (this functionality may be added to more
+  integrators in the future).
 
-- Added BatchInverseElementTransformation to batch InverseElementTransformation
-  searches. Batch searches are currently limited to meshes with a single element
-  geometry type of SEGMENT, SQUARE, or CUBE. Additional element geometry types
-  may be added in the future. Mixed element order meshes are supported. Batch
-  searches can be performed on the CPU (serial per MPI rank) or GPU. Embedded
-  elements (SEGMENT in 2D/3D space or SQUARE in 3D space) are supported, however
-  the existing solvers may struggle to find a valid solution.
+- Calls to slower fallback kernels can be reported to `mfem::err` by setting
+  the environment variable `MFEM_REPORT_KERNELS` to any value other than `NO`
+  or by explicitly calling `KernelReporter::Enable`. Users can then add
+  specializations for these kernels to achieve higher performance.
 
-- Calls to slower fallback kernels can be reported to mfem::err by setting the
-  environment variable MFEM_REPORT_KERNELS to any value other than NO or by
-  explicitly calling KernelReporter::Enable. For higher performance, users can
-  then add specializations for these kernels.
+- Element assembly kernels have been added for low-order refined to
+  high-order transfer operators. New kernels can be offloaded as device
+  kernels. Example usage may be found in lor-transfer.cpp under miniapps/tools.
 
-- Element assembly kernels have been added for low-order refined -> high-order
-  transfer operators. New kernels can be offloaded as device kernels. Example
-  usage may be found in lor-transfer.cpp in the miniapps/tools/ directory.
-
-- Added GPU acceleration and element assembly for DivDivIntegrator and
-  NormalTraceJumpIntegrator.
+- Added support for GPU accelerated FindPointsGSLIB. Note that this will require
+  the users to switch from gslib v1.0.7 to v1.0.9.
 
 - Allow BlockLowerTriangularPreconditioner to run on GPU.
 
 - Use device vectors in GMRES, FGMRES and other iterative methods.
 
-Linear and nonlinear solvers
-----------------------------
-- Added GPU acceleration of the algebraic hybridization solver for grad-div
-  problems in H(div). See Example 4.
-
-- Added a self-contained implementation of the Method of Moving Asymptotes (MMA)
-  for solving optimization problems.
-
+Miscellaneous
+-------------
 - Added support for SUNDIALS v7. See the section "API changes" for some small
   changes related to this new version.
 
-- Changed the name of class IterativeSolverMonitor to IterativeSolverController,
-  which now allows for specifying convergence by a user defined criterion. For
-  backward compatibility, the old name is still available.
+- Refactored the `ARKStepSolver` class (ARKODE interface) to use
+  `TimeDependentOperator::Mult` only when the associated ODE operator is
+  expressed in explicit form (i.e., `TimeDependentOperator::isExplicit()`),
+  otherwise `TimeDependentOperator::ExplicitMult` is used. A check has been
+  added to `ARKStepSolver` to verify that the associated ODE operator is not in
+  explicit form when a mass matrix solver is enabled via a call to either the
+  `UseMFEMMassLinearSolver` or `UseSundialsMassLinearSolver` methods. This is
+  because enabling a mass matrix solver assumes that F(u,k,t) = M k in the
+  associated ODE operator.
 
-- Refactored the ARKStepSolver class (ARKODE interface) to use the Mult() method
-  of TimeDependentOperator only when the associated ODE operator is expressed in
-  explicit form (i.e., TimeDependentOperator::isExplicit()), otherwise the
-  method ExplicitMult() is used. A check has been added to ARKStepSolver to
-  verify that the associated ODE operator is not in explicit form when a mass
-  matrix solver is enabled via a call to either the UseMFEMMassLinearSolver or
-  UseSundialsMassLinearSolver methods. This is because enabling a mass matrix
-  solver assumes that F(u,k,t) = M k in the associated ODE operator.
+- Added support for custom interpolation procedure in FindPointsGSLIB.
 
-- Added ODE solvers selection routines. This creates a uniformity across
-  examples, miniapps and other executables in regard to ODE (time-integrator)
-  selection.
+- `FiniteElementSpace` has new methods to directly set prolongation and
+  restriction operators to arbitrary sparse matrices.
 
-- Added new mechanism for retrieving and setting state vectors in ODE solvers.
-  This is relevant for AB/AM and gen-alpha solvers.
+- There are new convenience constructors for NURBS patches and knot vectors.
 
-- Added ODEsolver/ODEsolver2 unit tests to verify order of convergence and
-  read/write functionality.
+- Added convenience methods for manipulating boundary attribute marker arrays;
+  `(Par)Mesh::MarkExternalBoundaries`, `(Par)Mesh::UnmarkInternalBoundaries`,
+  `(Par)Mesh::MarkNamedBoundaries`, and `(Par)Mesh::UnmarkNamedBoundaries`.
+  See examples `ex1.cpp`, `ex1p.cpp`, and `ex11p.cpp` for basic usage.
 
-New and updated examples and miniapps
--------------------------------------
-- Added an MFEM example for the eikonal equation (examples/ex40) based on the
-  proximal Galerkin method introduced by Keith and Surowiec.
+- Added `(Par)Mesh::GetExteriorFaceMarker` for identifying faces on the
+  exterior of the mesh irrespective of their presence in the list of "boundary
+  elements".
 
-- Added miniapps to demonstrate the H(div) and H(curl) NURBS elements.
+- Added methods to `(Par)FiniteElementSpace` to identify all degrees of freedom
+  located on the exterior of the domain without reference to the list of
+  "boundary elements"; `GetExteriorVDofs` and `GetExteriorTrueDofs`.
 
-- Fixed element visualization in the Mesh explorer miniapp.
+- `LinearFormIntegrator` and `NonlinearFormIntegrator` (including
+  `BilinearFormIntegrator`) now all inherit from a base class `Integrator`
+  that combines some logic related to selecting quadrature rules. This includes
+  a virtual method `Integrator::GetDefaultIntegrationRule`, which should be
+  favored over directly defining a default integration rule in the element-level
+  assembly routines (although the latter is still possible, by leaving the new
+  virtual method as its default base implementation of returning `NULL`).
 
-- Added a command line option to all miniapps (-p or --send-port) for
-  specifying the GLVis server socket port (19916 by default).
-
-- Added a new toy miniapp that animates an interesting fidget spiral cone toy.
-  See miniapps/toys/spiral.cpp.
-
-Miscellaneous
--------------
 - Updated the benchmarks (in tests/benchmarks) to work with the latest Google
   Benchmarks classes (version 1.9.1). Renamed the MFEM_ENABLE_GOOGLE_BENCHMARKS
   CMake option to just MFEM_ENABLE_BENCHMARKS.
 
-- Updated the minimum CMake version requirements:
-  * CMake >= 3.12 for CPU builds,
-  * CMake >= 3.17 for CUDA builds, and
-  * CMake >= 3.14 for HIP builds (CMake >= 3.12 may work as well, not tested).
-
-- Various other simplifications, extensions, and bugfixes in the code.
+- Changed the name of `IterativeSolverMonitor` to `IterativeSolverController`
+  which now allows for declaring convergence by a user defined criterion. For
+  backward compatibility, the old name is still available.
 
 API changes
 -----------
-- In class GridFunction, fec was renamed to fec_owned.
+- API change: 'TMOP_Metric_skew2D' has been marked as deprecated.
 
-- RiemannSolver was renamed to NumericalFlux (the old name has been deprecated
-  through typedef).
+- API change: in class GridFunction, 'fec' was renamed to 'fec_owned'.
 
-- API changes due to SUNDIALS v7:
-  * the SUNDIALS types realtype and booleantype are no longer defined by v7
-    and therefore MFEM now uses the new type names sunrealtype and
-    sunbooleantype, respectively, which MFEM defines when using SUNDIALS < v6
+- API change: `RiemannSolver` was renamed to `NumericalFlux` (the old name has
+  been been deprecated through typedef)
+
+- API change: support for SUNDIALS v7:
+  * the SUNDIALS types `realtype` and `booleantype` are no longer defined by v7
+    and therefore MFEM now uses the new type names `sunrealtype` and
+    `sunbooleantype`, respectively, which MFEM defines when using SUNDIALS < v6
     where these types were not defined.
-  * The SUNDIALS macro SUNLS_SUCCESS and some other *_SUCCESS macros were
-    removed and replaced by SUN_SUCCESS in v7, so to avoid tedious checks for
-    SUNDIALS versions, MFEM now defines and uses the constant SUN_SUCCESS when
+  * The SUNDIALS macro `SUNLS_SUCCESS` and some other `*_SUCCESS` macros were
+    removed and replaced by `SUN_SUCCESS` in v7, so to avoid tedious checks for
+    SUNDIALS versions, MFEM now defines and uses the constant `SUN_SUCCESS` when
     using SUNDIALS < v7.
-  * The constants SUN_PREC_*, introduced by SUNDIALS v6 are now introduced by
+  * The constants `SUN_PREC_*`, introduced by SUNDIALS v6 are now introduced by
     MFEM when using SUNDIALS < v6 to avoid tedious version checks.
 
-- TMOP_Metric_skew2D has been marked as deprecated.
-
 
 Version 4.7, released on May 7, 2024
 ====================================
@@ -465,6 +185,9 @@ Meshing improvements
 
 - Added support for internal boundary elements in nonconforming meshes.
 
+- Added ExodusII output capability. The writer can handle first-order (Pyramid5,
+  Wedge6, Hex8, Tet4) and second-order FE types (Pyramid14, Wedge18, Hex27, Tet10).
+
 - The ReadCubit Genesis mesh importer has been rewritten to improve readability.
 
 Discretization improvements
@@ -524,6 +247,15 @@ New and updated examples and miniapps
 - Added two new example codes: 38 and 39/39p described above. Substantially
   updated Example 18/18p.
 
+- Added ODE solvers selection routines. This creates a uniformity across examples,
+  miniapps and other executables in regard to ODE(time-integrator) selection.
+
+- Added new mechanism for retrieving and setting state vectors in ODE solvers.
+  This is relevant for AB/AM and gen-alpha solvers.
+
+- Added ODEsolver/ODEsolver2 unit tests to verify order of convergence and
+  read/write functionality.
+
 Miscellaneous
 -------------
 - Updated the Doxygen documentation style, which now requires Doxygen version
@@ -537,6 +269,8 @@ Miscellaneous
 
 - Various other simplifications, extensions, and bugfixes in the code.
 
+- Added GSLIB-based gather-scatter operator.
+
 
 Version 4.6, released on September 27, 2023
 ===========================================

CMakeLists.txt

@@ -12,14 +12,13 @@
 # The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
 # Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
 # Version 3.8 or newer is required for direct CUDA support.
-# Version 3.12 or newer is required for setting maximum policy version.
-cmake_minimum_required(VERSION 3.12.0...4.0.0)
+cmake_minimum_required(VERSION 3.8)
 message(STATUS "CMake version: ${CMAKE_VERSION}")
 set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
   "Path to optional user configuration file.")
 
-# Require C++17 and disable compiler-specific extensions
-set(CMAKE_CXX_STANDARD 17 CACHE STRING "C++ standard to use.")
+# Require C++11 and disable compiler-specific extensions
+set(CMAKE_CXX_STANDARD 11 CACHE STRING "C++ standard to use.")
 set(CMAKE_CXX_STANDARD_REQUIRED ON CACHE BOOL
   "Force the use of the chosen C++ standard.")
 set(CMAKE_CXX_EXTENSIONS OFF CACHE BOOL "Enable C++ standard extensions.")
@@ -59,7 +58,7 @@ project(mfem NONE)
 # Current version of MFEM, see also `makefile`.
 #   mfem_VERSION = (string)
 #   MFEM_VERSION = (int)   [automatically derived from mfem_VERSION]
-set(${PROJECT_NAME}_VERSION 4.9.1)
+set(${PROJECT_NAME}_VERSION 4.7.1)
 
 # Prohibit in-source build
 if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -105,13 +104,6 @@ endif()
 # Include xSDK default CMake file.
 include("${CMAKE_CURRENT_SOURCE_DIR}/config/XSDKDefaults.cmake")
 
-# Path to MFEM's CMake modules and utilities.
-set(MFEM_CMAKE_PATH ${PROJECT_SOURCE_DIR}/config)
-set(CMAKE_MODULE_PATH ${MFEM_CMAKE_PATH}/cmake/modules)
-
-# Load MFEM CMake utilities.
-include(MfemCmakeUtilities)
-
 # Enable languages.
 enable_language(CXX)
 if (MINGW)
@@ -124,71 +116,42 @@ if (MFEM_USE_CUDA)
    if (MFEM_USE_HIP)
       message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
    endif()
-   # CUDAToolkit was added in CMake 3.17, so we require at least CMake 3.17 when
-   # CUDA is enabled:
-   if (CMAKE_VERSION VERSION_LESS 3.17.0)
-      message(FATAL_ERROR "CUDA support requires CMake >= 3.17")
-   endif()
    # Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
    if (NOT CMAKE_CUDA_HOST_COMPILER)
       set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
    endif()
-   if (NOT CMAKE_CUDA_ARCHITECTURES)
-      # make CUDA_ARCH resemble the same form as CMAKE_CUDA_ARCHITECTURES
-      string(REPLACE "sm_" "" CUDA_ARCH_TMP "${CUDA_ARCH}")
-      string(REPLACE "," ";" CUDA_ARCH "${CUDA_ARCH_TMP}")
-      set(CMAKE_CUDA_ARCHITECTURES "${CUDA_ARCH}")
-   else()
-      set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
-   endif()
-   message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
    enable_language(CUDA)
-   if (CMAKE_VERSION VERSION_LESS 3.18.0)
-      # backup try to detect if this is clang or nvcc
-      if(CMAKE_CUDA_COMPILER MATCHES "nvcc$")
-         # nvcc
-         set(MFEM_CUDA_COMPILER_IS_NVCC ON)
-         set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
-         if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-             OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-             OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
-            set(CUDA_FLAGS "-arch=${CMAKE_CUDA_ARCHITECTURES} ${CUDA_FLAGS}")
-         else()
-            # build -gencode sequence for multiple architectures
-            foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
-               set(CUDA_FLAGS
-                   "-gencode arch=compute_${ENTRY},code=sm_${ENTRY} ${CUDA_FLAGS}")
-            endforeach()
-         endif()
-      else()
-         # build cuda-gpu-arch sequence for multiple architectures
-         # does not support all/all-major/native
-         foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
-            set(CUDA_FLAGS "-cuda-gpu-arch=sm_${ENTRY} ${CUDA_FLAGS}")
-         endforeach()
-      endif()
-   else()
-      # TODO: all, native, all-major require CMake 3.24+
-      # backport support for CMake 3.18 to 3.24
-      if (CMAKE_CUDA_COMPILER_ID STREQUAL "NVIDIA")
-         # nvcc
-         set(MFEM_CUDA_COMPILER_IS_NVCC ON)
-         set(CUDA_FLAGS
-             "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
-      endif()
-   endif()
    set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
       "CUDA standard to use.")
    set(CMAKE_CUDA_STANDARD_REQUIRED ON CACHE BOOL
       "Force the use of the chosen CUDA standard.")
    set(CMAKE_CUDA_EXTENSIONS OFF CACHE BOOL "Enable CUDA standard extensions.")
+   set(CUDA_FLAGS "--expt-extended-lambda")
+   if (CMAKE_VERSION VERSION_LESS 3.18.0)
+      set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
+   elseif (NOT CMAKE_CUDA_ARCHITECTURES)
+      string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
+      if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
+         set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
+      else()
+         message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
+      endif()
+   else()
+      set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
+   endif()
+   message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
+   if (CMAKE_VERSION VERSION_LESS 3.12.0)
+      # CMake versions 3.8 and 3.9 require this to work; 3.10 and 3.11 are not
+      # tested and may not actually need this (but should be ok to keep).
+      set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
+      set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
+   endif()
    set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
    find_package(CUDAToolkit REQUIRED)
    set(CUSPARSE_FOUND TRUE)
    set(CUBLAS_FOUND TRUE)
-   # Initialize CUSPARSE_LIBRARIES and CUBLAS_LIBRARIES:
-   mfem_culib_set_libraries(CUSPARSE cusparse)
-   mfem_culib_set_libraries(CUBLAS cublas)
+   get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
+   get_target_property(CUBLAS_LIBRARIES CUDA::cublas LOCATION)
 endif()
 
 if (XSDK_ENABLE_C)
@@ -201,6 +164,13 @@ endif()
 # Suppress warnings about MACOSX_RPATH
 set(CMAKE_MACOSX_RPATH OFF CACHE BOOL "")
 
+# CMake needs to know where to find things
+set(MFEM_CMAKE_PATH ${PROJECT_SOURCE_DIR}/config)
+set(CMAKE_MODULE_PATH ${MFEM_CMAKE_PATH}/cmake/modules)
+
+# Load MFEM CMake utilities.
+include(MfemCmakeUtilities)
+
 string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UC)
 mfem_version_to_int(${${PROJECT_NAME}_VERSION} ${PROJECT_NAME_UC}_VERSION)
 set(${PROJECT_NAME_UC}_VERSION_STRING ${${PROJECT_NAME}_VERSION})
@@ -258,16 +228,10 @@ endif()
 
 # AMD HIP
 if (MFEM_USE_HIP)
-  if (NOT CMAKE_HIP_ARCHITECTURES)
-    if (HIP_ARCH)
-      set(CMAKE_HIP_ARCHITECTURES CACHE STRING "HIP targets to compile for" "${HIP_ARCH}")
-      set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for" FORCE)
-    endif()
-  else()
-    set(HIP_ARCH CACHE STRING "HIP targets to compile for" "${CMAKE_HIP_ARCHITECTURES}")
-    set(GPU_TARGETS "${CMAKE_HIP_ARCHITECTURES}" CACHE STRING "HIP targets to compile for" FORCE)
+  if (HIP_ARCH)
+    message(STATUS "Using HIP architecture: ${HIP_ARCH}")
+    set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for")
   endif()
-  message(STATUS "Using HIP architecture: ${CMAKE_HIP_ARCHITECTURES}")
   if (ROCM_PATH)
     list(INSERT CMAKE_PREFIX_PATH 0 ${ROCM_PATH})
   endif()
@@ -291,31 +255,11 @@ if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
   if (OPENMP_FOUND)
     set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
     if (MFEM_USE_CUDA)
-      if(MFEM_CUDA_COMPILER_IS_NVCC)
-        set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
-      else()
-        set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${OpenMP_CXX_FLAGS}")
-      endif()
+      set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
     endif()
   endif()
 endif()
 
-# Warn user if deprecated FETCH_TPLS is provided
-if (DEFINED FETCH_TPLS)
-  message(STATUS "Setting MFEM_FETCH_TPLS to user-provided value of FETCH_TPLS (i.e., MFEM_FETCH_TPLS=${FETCH_TPLS})")
-  set (MFEM_FETCH_TPLS FETCH_TPLS)
-  message(DEPRECATION "The use of FETCH_TPLS is deprecated and will be removed in future verison. Please use MFEM_FETCH_TPLS instead.")
-endif()
-
-  # Umpire (must be included before hypre, so hypre can use it if needed)
-if (MFEM_USE_UMPIRE)
-   # umpire uses FindCUDA, which needs CMP0146=OLD in CMake >= 3.27
-   if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.27.0)
-      cmake_policy(SET CMP0146 OLD)
-   endif()
-   find_package(UMPIRE REQUIRED)
-endif()
-
 # MPI -> hypre; PETSc (optional)
 if (MFEM_USE_MPI)
   find_package(MPI REQUIRED)
@@ -443,11 +387,6 @@ if (MFEM_USE_GSLIB)
   find_package(GSLIB REQUIRED)
 endif()
 
-# HDF5
-if (MFEM_USE_HDF5)
-  find_package(HDF5 REQUIRED)
-endif()
-
 # NetCDF
 if (MFEM_USE_NETCDF)
   find_package(NetCDF REQUIRED)
@@ -533,13 +472,14 @@ endif()
 
 # RAJA
 if (MFEM_USE_RAJA)
-   # RAJA uses FindCUDA, which needs CMP0146=OLD in CMake >= 3.27
-   if(CMAKE_VERSION VERSION_GREATER_EQUAL 3.27.0)
-      cmake_policy(SET CMP0146 OLD)
-   endif()
    find_package(RAJA REQUIRED)
 endif()
 
+# UMPIRE
+if (MFEM_USE_UMPIRE)
+   find_package(UMPIRE REQUIRED)
+endif()
+
 # GOOGLE-BENCHMARK
 if (MFEM_USE_BENCHMARK)
    find_package(Benchmark REQUIRED)
@@ -586,10 +526,9 @@ if (MFEM_USE_TRIBOL)
   endif()
 endif()
 
+# Enzyme
 if (MFEM_USE_ENZYME)
-    find_package(Enzyme REQUIRED HINTS ${ENZYME_DIR})
-    message(STATUS "Enzyme found in ${ENZYME_DIR}.")
-    set(ENZYME_INCLUDE_DIRS ${ENZYME_DIR}/include)
+   find_package(ENZYME REQUIRED)
 endif()
 
 # MFEM_TIMER_TYPE
@@ -629,29 +568,22 @@ find_package(Threads REQUIRED)
 #    integers, the METIS header (with 32-bit indices, as used by mfem) needs to
 #    be before SuiteSparse.
 set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
-    SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB HDF5
+    SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
     NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
     ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CALIPER CODIPACK
     BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
-    ALGOIM ENZYME CUDA::cudart)
+    ALGOIM ENZYME)
 
-# Add all created targets and *_FOUND libraries in the variables TPL_TARGETS and
-# TPL_LIBRARIES, respectively.
-set(TPL_TARGETS)
+# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
 set(TPL_LIBRARIES "")
 set(TPL_INCLUDE_DIRS "")
 foreach(TPL IN LISTS MFEM_TPLS)
-  if (${TPL}_FOUND OR TARGET ${TPL})
+  if (${TPL}_FOUND)
     message(STATUS "MFEM: using package ${TPL}")
-    if (TARGET ${TPL})
-      list(APPEND TPL_TARGETS ${TPL})
-    else()
-      list(APPEND TPL_LIBRARIES ${${TPL}_LIBRARIES})
-      list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
-    endif()
+    list(APPEND TPL_LIBRARIES ${${TPL}_LIBRARIES})
+    list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
   endif()
 endforeach(TPL)
-
 list(REVERSE TPL_LIBRARIES)
 list(REMOVE_DUPLICATES TPL_LIBRARIES)
 list(REVERSE TPL_LIBRARIES)
@@ -723,12 +655,8 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX})
 
 # Declaring the library
 mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
-target_compile_features(mfem PUBLIC cxx_std_${CMAKE_CXX_STANDARD})
 # message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
-target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES} ${TPL_TARGETS})
-if (TPL_TARGETS)
-  add_dependencies(mfem ${TPL_TARGETS})
-endif()
+target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
 if (MINGW)
   target_link_libraries(mfem PRIVATE ws2_32)
 endif()
@@ -752,9 +680,6 @@ if (MFEM_USE_MPI)
     target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
   endif()
 endif()
-if (MFEM_USE_ENZYME)
-  target_link_libraries(mfem PUBLIC ClangEnzymeFlags)
-endif()
 
 set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
 set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
@@ -870,12 +795,11 @@ add_dependencies(exec
 #  - https://cmake.org/Bug/view.php?id=8438
 
 # Add a target to copy the mfem data directory to the build directory
-# Implementable as a single copy_directory_if_different command w/ CMake >= 3.26
-file(GLOB DATA_FILES CONFIGURE_DEPENDS ${PROJECT_SOURCE_DIR}/data/*)
-add_custom_target(copy_data
-  COMMAND ${CMAKE_COMMAND} -E make_directory data
-  COMMAND ${CMAKE_COMMAND} -E copy_if_different ${DATA_FILES} data
-  COMMENT "Syncing the data directory ...")
+add_custom_command(OUTPUT data_is_copied
+  COMMAND ${CMAKE_COMMAND} -E copy_directory ${PROJECT_SOURCE_DIR}/data data
+  COMMAND ${CMAKE_COMMAND} -E touch data_is_copied
+  COMMENT "Copying the data directory ...")
+add_custom_target(copy_data DEPENDS data_is_copied)
 # Add 'copy_data' as a prerequisite for all executables, if the source and the
 # build directories are not the same.
 if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
@@ -1007,10 +931,6 @@ install(FILES
 install(EXPORT ${PROJECT_NAME_UC}Targets
     DESTINATION ${INSTALL_CMAKE_DIR})
 
-# Install the data directory if present, i.e. if the copy_data target is built
-install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
-  DESTINATION ${MFEM_INSTALL_DIR} OPTIONAL)
-
 #-------------------------------------------------------------------------------
 # Create 'config.mk' from 'config.mk.in' for the build and install locations and
 # define install rules for 'config.mk' and 'test.mk'

CONTRIBUTING.md

@@ -120,22 +120,14 @@ The MFEM source code has the following structure:
   |   └── superlu
   ├── fem
   │   ├── ceed
-  │   ├── dfem
-  │   ├── eltrans
   │   ├── fe
-  │   ├── gslib
   │   ├── integ
   │   ├── lor
   │   ├── moonolith
   │   ├── qinterp
   │   └── tmop
-  │   |   ├── assemble
-  │   |   ├── metrics
-  │   |   ├── mult
-  │   |   └── tools
   ├── general
   ├── linalg
-  │   ├── batched
   │   └── simd
   ├── mesh
   │   └── submesh
@@ -143,19 +135,15 @@ The MFEM source code has the following structure:
   │   ├── adjoint
   │   ├── autodiff
   │   ├── common
-  │   ├── contact
-  │   ├── dfem
   │   ├── dpg
   │   ├── electromagnetics
-  │   ├── fluids
-  │   │   ├── navier
-  │   │   └── schrodinger-flow
   │   ├── gslib
   │   ├── hdiv-linear-solver
   │   ├── hooke
   │   ├── meshing
   │   ├── mtop
   │   ├── multidomain
+  │   ├── navier
   │   ├── nurbs
   │   ├── parelag
   │   ├── performance
@@ -558,8 +546,6 @@ Before a PR can be merged, it should satisfy the following:
       - [ ] Add a short description of the example in the "Extensive Examples" section of `features.md`.
 - [ ] New miniapps:
    - [ ] All sample runs at the top of the miniapp source file work.
-   - [ ] Add to internal testing repo, if sample runs should be included in nightly tests [internally](#tests-at-llnl).
-   - [ ] Exclude long sample runs from automated testing, with `* ` (one space) before the command.
    - [ ] Update top-level `makefile` and `makefile` in corresponding miniapp directory.
    - [ ] Add the miniapp binary and any files generated by it to the top-level `.gitignore` file.
    - [ ] Update CMake build system:
@@ -754,7 +740,7 @@ and debug build is performed with a simple run of `ex1` to verify the executable
 - We mirror the `master` and `next` branches internally (to `gh-master` and
   `gh-next`) and run longer nightly tests via cron. On the weekends, a more
   extensive test is run which extracts and executes all the different sample
-  runs from each example and most miniapps.
+  runs from each example.
 
 - We also mirror PRs on the LLNL GitLab instance. PR mirroring can only be
   triggered by _LLNL developers_, but test status is publicly available. Only

INSTALL

@@ -121,20 +121,10 @@ Parallel build:
    make -j 4
 (For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
 
-Parallel build with fetching of hypre and METIS:
-   mkdir <mfem-buil-dir> ; cd <mfem-build-dir>
-   cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DMFEM_FETCH_TPLS=YES
-   make -j 4
-
 CUDA build:
-   (this build requires CMake 3.17 or newer)
+   (this build requires CMake 3.8 or newer)
    mkdir <mfem-build-dir> ; cd <mfem-build-dir>
-   cmake <mfem-source-dir> -DMFEM_USE_CUDA=YES -DCUDA_ARCH=sm_70
-   make -j 4
-
-HIP build:
-   mkdir <mfem-build-dir> ; cd <mfem-build-dir>
-   cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 -DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
+   cmake <mfem-source-dir> -DMFEM_USE_CUDA=YES
    make -j 4
 
 Example codes (serial/parallel, depending on the build):
@@ -268,7 +258,7 @@ See the configuration file config/defaults.mk for the default settings.
 Compilers:
    CXX      - C++ compiler, serial build
    MPICXX   - MPI C++ compiler, parallel build
-   CUDA_CXX - The CUDA compiler, 'nvcc' or 'clang++'
+   CUDA_CXX - The CUDA compiler, 'nvcc'
 
 Compiler options:
    OPTIM_FLAGS - Options for optimized build
@@ -428,10 +418,6 @@ MFEM_USE_GNUTLS = YES/NO
    When MFEM_USE_GNUTLS is enabled, the additional build options, GNUTLS_*, are
    also used, see below.
 
-MFEM_USE_HDF5 = YES/NO
-   The HDF5 library is used for input and output of HDF5 files, for example
-   Cubit mesh files or VTKHDF files for ParaView.
-
 MFEM_USE_NETCDF = YES/NO
    NetCDF is the library that is used by the SNL Cubit mesh generator to create
    Genesis mesh files. This option enables a reader for these files, which
@@ -613,12 +599,11 @@ MFEM_USE_TRIBOL = YES/NO
 
 MFEM_USE_ENZYME = YES/NO
    Enables automatic differentiation support through the LLVM plugin Enzyme.
-   This requires the compiler to be set to clang (>=14.0.0). We also advise the
-   use of the link time optimization (LTO) plugin, so functions defined over
-   multiple files (compilation units) can be differentiated automatically. This
-   requires to also use LLVM/LLD for linking. The recommended options are in
-   config/defaults.mk. For more detailed instructions, see the section "Specific
-   options for Enzyme" below.
+   This requires the compiler to be set to clang (>=14.0.0). We also advise to
+   use the link time optimization (LTO) plugin, to enable functions that you
+   define over multiple files (compilation units) and want to be differentiated
+   automatically, to work. This requires to also use LLVM/LLD for linking.
+   Recommended options are in config/defaults.mk.
 
 MFEM_BUILD_TAG = (any value)
    An optional tag to characterize the build. Exported to config/config.mk.
@@ -668,7 +653,6 @@ The specific libraries and their options are:
 - OpenMP (optional), usually part of compiler, used when either MFEM_USE_OPENMP
   or MFEM_USE_LEGACY_OPENMP is set to YES.
   Options: OPENMP_OPT, OPENMP_LIB.
-  Versions: OpenMP >= 3.1 when MFEM_USE_OPENMP=YES.
 
 - High-resolution POSIX clocks: when using MFEM_TIMER_TYPE = 2, it may be
   necessary to link with a system library (e.g. librt.so).
@@ -725,9 +709,7 @@ The specific libraries and their options are:
   URL: https://ginkgo-project.github.io
   Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
            Debug).
-  Versions: Ginkgo >= 1.9.0. When building Ginkgo with distributed support, a
-            recent version of the "develop" branch is required (1.11 as defined
-            in include/ginkgo/config.hpp).
+  Versions: Ginkgo >= 1.9.0.
 
 - AmgX (optional), used when MFEM_USE_AMGX = YES.
   URL: https://github.com/NVIDIA/AMGX
@@ -746,9 +728,6 @@ The specific libraries and their options are:
   Options: GNUTLS_OPT, GNUTLS_LIB.
   Versions: GnuTLS >= 2.12.0, older versions may work too.
 
-- HDF5 (optional), used when MFEM_USE_HDF5 = YES, required for reading and
-  writing files in VTKHDF format.
-
 - NetCDF (optional), used when MFEM_USE_NETCDF = YES, required for reading Cubit
   mesh files. Also requires installation of HDF5 and ZLIB, as explained at the
   NetCDF web site. Note that we use the plain vanilla "C" version of NetCDF, you
@@ -844,13 +823,12 @@ The specific libraries and their options are:
 
 - CUDA (optional), used when MFEM_USE_CUDA = YES.
   URL: https://developer.nvidia.com/cuda-toolkit
-  Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB, CUDA_DIR (when CUDA_CXX=clang++).
+  Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
   Versions: CUDA >= 10.1.168.
 
 - HIP (optional), used when MFEM_USE_HIP = YES.
   URL: https://rocmdocs.amd.com
   Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
-  Versions: ROCm >= 5.6.1.
 
 - OCCA (optional), used when MFEM_USE_OCCA = YES.
   URL: https://libocca.org
@@ -861,7 +839,7 @@ The specific libraries and their options are:
   URL: https://github.com/CEED/libCEED
        https://ceed.exascaleproject.org/libceed
   Options: CEED_DIR, CEED_OPT, CEED_LIB.
-  Versions: libCEED >= 0.12.0.
+  Versions: libCEED >= 0.12.
 
 - RAJA (optional), used when MFEM_USE_RAJA = YES.
   Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
@@ -921,7 +899,7 @@ The specific libraries and their options are:
 - Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
   URL: https://github.com/EnzymeAD/Enzyme
   Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
-  Versions: Enzyme >= v0.0.176.
+  Versions: Enzyme >= v0.0.33.
 
 
 Building with CMake
@@ -1024,7 +1002,7 @@ Configuration variables (CMake)
 ===============================
 See the configuration file config/defaults.cmake for the default settings.
 
-Note: the option MFEM_USE_CUDA requires CMake version 3.17 or newer!
+Note: the option MFEM_USE_CUDA requires CMake version 3.8 or newer!
 
 Non-standard CMake variables for compilers:
    CXX    - If set, overwrite the auto-detected C++ compiler, serial build
@@ -1055,7 +1033,6 @@ MFEM_USE_STRUMPACK
 MFEM_USE_GINKGO
 MFEM_USE_AMGX
 MFEM_USE_GNUTLS
-MFEM_USE_HDF5
 MFEM_USE_NETCDF
 MFEM_USE_MPFR
 MFEM_USE_ZLIB
@@ -1083,10 +1060,6 @@ The following options are CMake specific:
 MFEM_ENABLE_TESTING  - Enable the ctest framework for testing.
 MFEM_ENABLE_EXAMPLES - Build all of the examples by default.
 MFEM_ENABLE_MINIAPPS - Build all of the miniapps by default.
-MFEM_FETCH_TPLS      - Enable fetching of all supported third-party libraries.
-MFEM_FETCH_GSLIB     - Enable fetching of gslib.
-MFEM_FETCH_HYPRE     - Enable fetching of hypre.
-MFEM_FETCH_METIS     - Enable fetching of metis.
 
 External libraries (CMake):
 ---------------------------
@@ -1148,13 +1121,6 @@ The following built-in CMake packages are also used:
       set the <LIBNAME>_LIBRARIES option directly; the configuration option
       <LIBNAME>_DIR is not supported.
 
-The MFEM CMake build system also provides fetching (automated building) for the
-packages/libraries listed below. Note that when fetching is enabled, any related
-auto-detection functionality is disabled.
-
- - GSLIB
- - HYPRE
- - METIS
 
 Building without GNU make or CMake
 ==================================
@@ -1195,89 +1161,6 @@ larger problems, there are two options:
 1. Building hypre with '--enable-bigint' defines the local and global indices to
    be 64-bit. This is convenient, but requires more memory than necessary.
 
-2. Building hypre with '--enable-mixedint' defines the local indices to be
+2. Building hypre with '--enable-mixedint' defines the local indiced to be
    32-bit, while using a 64-bit storage for global indices. This option is
    currently tested only in ex1p, and may not work in more general settings.
-
-Specific options for HIP
-========================
-MFEM expects the `ROCM_PATH` environment variable to be set to the path of the
-ROCM install, as well as having `$ROCM_PATH/bin` in `PATH`.
-
-Specific options for RAJA+HIP+MPI
-=================================
-RAJA uses CMake's built-in HIP support (added in CMake 3.21), while MFEM uses
-the older HIP C++ library build/linkage. To ensure proper build and linkage
-check that `CMAKE_CXX_COMPILER` and `CMAKE_HIP_COMPILER` are set to the same
-compiler. This is especially important when using an MPI compiler (for example
-crayCC) where some linker flags may get dropped if these two are not identical.
-
-Specific options for Enzyme
-===========================
-To work properly, MFEM and Enzyme need to use the same LLVM/Clang configuration.
-For example, on macOS this can be done by using Homebrew: first install Enzyme,
-which in turn installs LLVM as a dependency (as of May 2025, this is LLVM 19):
-
-   brew install enzyme
-
-In order to ensure the correct compiler choice for the MFEM makefile build, set
-
-   CXX = $(shell brew --prefix llvm@19)/bin/clang++
-
-in the user.mk file (adapted from config/defaults.mk, see the section "Building
-with GNU make" above). With MPI, it is convenient to set
-
-   MPICXX = OMPI_CXX=$(CXX) mpicxx
-
-for OpenMPI and
-
-   MPICXX = MPICH_CXX=$(CXX) mpicxx
-
-for MPICH.
-
-Additionally, the Enzyme directory needs to be set in user.mk as follows:
-
-   ENZYME_DIR = $(shell brew --prefix enzyme)
-
-Specifically, a full build on a Mac can be tested by adding the following
-user.mk file in the config/ directory
-
-   MFEM_USE_ENZYME = YES
-   ENZYME_DIR = $(shell brew --prefix enzyme)
-   LLVM_DIR = $(shell brew --prefix llvm@19)
-   CXX = $(LLVM_DIR)/bin/clang++
-   MFEM_USE_MPI = YES
-   MPICXX = OMPI_CXX=$(CXX) mpicxx
-
-and running
-
-   make config
-   make -j
-   cd miniapps/dfem
-   make
-   ./dfem-minimal-surface
-
-On Linux systems, for example Ubuntu 24.04, use the package manager to install
-the Enzyme dependencies
-
-   sudo apt install libclang-dev libzstd-dev llvm-dev clang
-
-and then clone and build Enzyme
-
-   cd $HOME
-   git clone https://github.com/EnzymeAD/Enzyme.git
-   cd Enzyme/enzyme && mkdir build && cd build
-   CC=clang CXX=clang++ cmake .. -DLLVM_DIR=/usr/lib/llvm-18/lib/cmake -DCMAKE_INSTALL_PREFIX=$HOME/Enzyme/enzyme/build
-   make -j
-   make install
-
-From here, one can proceed in the same way using the following user.mk settings
-
-   MFEM_USE_ENZYME = YES
-   ENZYME_DIR = $(HOME)/Enzyme/enzyme/build
-   CXX = clang++
-   MFEM_USE_MPI = YES
-   MPICXX = OMPI_CXX=$(CXX) mpicxx
-
-On other Linux systems the LLVM packages may have different names, for example
-on RHEL9, one needs to "sudo yum install llvm-devel libzstd clang-devel".

config/cmake/MFEMConfig.cmake.in

@@ -41,7 +41,6 @@ set(MFEM_USE_MAGMA @MFEM_USE_MAGMA@)
 set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
 set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
 set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
-set(MFEM_USE_HDF5 @MFEM_USE_HDF5@)
 set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
 set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
 set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
@@ -84,31 +83,6 @@ set_and_check(MFEM_LIBRARY_DIR "@PACKAGE_LIB_INSTALL_DIR@")
 
 check_required_components(MFEM)
 
-include(CMakeFindDependencyMacro)
-
-if (MFEM_USE_CUDA)
-  # required for projects linking to MFEM+CUDA, even if they don't use CUDA directly
-  find_dependency(CUDAToolkit)
-endif (MFEM_USE_CUDA)
-
-if (MFEM_USE_HIP)
-  # hip/rocm uses the modern MFEM way of linking to targets, need to find dependencies
-  find_dependency(HIP)
-  find_dependency(HIPBLAS)
-  find_dependency(HIPSPARSE)
-  if (MFEM_USE_MPI)
-    # assume HYPRE uses HIP
-    # alternatively could check HYPRE_USING_HIP
-    find_dependency(rocsparse)
-    find_dependency(rocrand)
-    find_dependency(rocsolver)
-  endif (MFEM_USE_MPI)
-endif (MFEM_USE_HIP)
-
-if (MFEM_USE_RAJA)
-   find_dependency(RAJA)
-endif()
-
 if (NOT TARGET mfem)
   include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
 endif (NOT TARGET mfem)

config/cmake/config.hpp.in

@@ -132,9 +132,6 @@
 // Enable Conduit support.
 #cmakedefine MFEM_USE_CONDUIT
 
-// Enable functionality based on the HDF5 library (reading VTKHDF files).
-#cmakedefine MFEM_USE_HDF5
-
 // Enable functionality based on the NetCDF library (reading CUBIT files).
 #cmakedefine MFEM_USE_NETCDF
 

config/cmake/modules/FindENZYME.cmake

@@ -0,0 +1,27 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+message(STATUS "Looking for ENZYME ...")
+message(STATUS "   in ENZYME_DIR = ${ENZYME_DIR}")
+
+# Make sure the directory and version combination works. Do nothing otherwise.
+if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
+  message(STATUS "Found ENZYME: ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
+
+  # Set ENZYME_FOUND
+  set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
+
+  # Set CXX flags to accommodate the Enzyme Clang plugin
+  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
+  set(MFEM_USE_ENZYME YES)
+else()
+
+endif()

config/cmake/modules/FindGSLIB.cmake

@@ -9,47 +9,10 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# Defines the following variables if fetching of TPLs is disabled (default):
+# Defines the following variables:
 #   - GSLIB_FOUND
 #   - GSLIB_LIBRARIES
 #   - GSLIB_INCLUDE_DIRS
-# otherwise, the following are defined:
-#   - GSLIB (imported library target)
-
-if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
-  enable_language(C)
-  string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
-  set(GSLIB_FETCH_VERSION 1.0.9)
-  set(GSLIB_C_FLAGS ${CMAKE_C_FLAGS_${BUILD_TYPE}})
-  if (CMAKE_C_FLAGS)
-    set(GSLIB_C_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
-  endif()
-  if (BUILD_SHARED_LIBS)
-    set(GSLIB_C_FLAGS "${GSLIB_C_FLAGS} -fPIC")
-  endif()
-  add_library(GSLIB STATIC IMPORTED)
-  # define external project and create future include directory so it is present
-  # to pass CMake checks at end of MFEM configuration step
-  message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_C_FLAGS}")
-  set(PREFIX ${CMAKE_BINARY_DIR}/fetch/gslib)
-  include(ExternalProject)
-  ExternalProject_Add(gslib
-    GIT_REPOSITORY https://github.com/Nek5000/gslib
-    GIT_TAG v${GSLIB_FETCH_VERSION}
-    GIT_SHALLOW TRUE
-    UPDATE_DISCONNECTED TRUE
-    PREFIX ${PREFIX}
-    CONFIGURE_COMMAND ""
-    BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS= ${GSLIB_C_FLAGS}"
-    INSTALL_COMMAND "")
-  file(MAKE_DIRECTORY ${PREFIX}/include)
-  # set imported library target properties
-  add_dependencies(GSLIB gslib)
-  set_target_properties(GSLIB PROPERTIES
-    IMPORTED_LOCATION ${PREFIX}/lib/libgs.a
-    INTERFACE_INCLUDE_DIRECTORIES ${PREFIX}/include)
-  return()
-endif()
 
 include(MfemCmakeUtilities)
 mfem_find_package(GSLIB GSLIB GSLIB_DIR "include" gslib.h "lib" gs

config/cmake/modules/FindHYPRE.cmake

@@ -9,119 +9,21 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# Defines the following variables if fetching of TPLs is disabled (default):
+# Defines the following variables:
 #   - HYPRE_FOUND
 #   - HYPRE_LIBRARIES
 #   - HYPRE_INCLUDE_DIRS
 #   - HYPRE_VERSION
 #   - HYPRE_USING_CUDA (internal)
 #   - HYPRE_USING_HIP (internal)
-# otherwise, the following are defined:
-#   - HYPRE (imported library target)
-#   - HYPRE_VERSION (cache variable)
 
-if (HYPRE_FOUND OR TARGET HYPRE)
+if (HYPRE_FOUND)
   if (HYPRE_USING_CUDA)
     find_package(CUDAToolkit REQUIRED)
   endif()
   if (HYPRE_USING_HIP)
     find_package(rocsparse REQUIRED)
     find_package(rocrand REQUIRED)
-    find_package(rocsolver REQUIRED)
-  endif()
-  if (HYPRE_LIBRARIES AND HYPRE_INCLUDE_DIRS AND HYPRE_VERSION)
-    find_package_handle_standard_args(HYPRE
-      REQUIRED_VARS HYPRE_LIBRARIES HYPRE_INCLUDE_DIRS HYPRE_VERSION
-    )
-    return()
-  endif()
-endif()
-
-if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
-  set(HYPRE_FETCH_VERSION 2.33.0)
-  set(HYPRE_FETCH_TAG "v${HYPRE_FETCH_VERSION}" CACHE STRING "Tag, branch, or commit for HYPRE")
-  add_library(HYPRE STATIC IMPORTED)
-  # set options and associated dependencies
-  set(HYPRE_CMAKE_OPTIONS "")
-  list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
-  # collect all HYPRE_ENABLE variables and pass them to hypre, assuming they are BOOL.
-  get_cmake_property(all_vars VARIABLES)
-  foreach(var ${all_vars})
-    if(var MATCHES "^HYPRE_ENABLE")
-      list(APPEND HYPRE_CMAKE_OPTIONS "-D${var}:BOOL=${${var}}")
-    endif()
-  endforeach()
-  # process all MFEM_USE variables that impact hypre
-  if (MFEM_USE_CUDA)
-    list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_CUDA:BOOL=ON -DCMAKE_CUDA_ARCHITECTURES:STRING=${CMAKE_CUDA_ARCHITECTURES})
-    find_package(CUDAToolkit REQUIRED)
-    target_link_libraries(HYPRE INTERFACE CUDA::cusparse CUDA::curand CUDA::cublas)
-  elseif (MFEM_USE_HIP)
-    list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_HIP:BOOL=ON)
-    find_package(rocsparse REQUIRED)
-    find_package(rocrand REQUIRED)
-    target_link_libraries(HYPRE INTERFACE rocsparse rocrand)
-  endif()
-  if (MFEM_USE_CUDA OR MFEM_USE_HIP)
-    if (MFEM_USE_UMPIRE)
-      if (EXISTS ${umpire_DIR})
-        list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_UMPIRE:BOOL=ON -Dumpire_DIR:PATH=${umpire_DIR})
-      else()
-        message(FATAL_ERROR "MFEM_USE_UMPIRE=ON, however umpire_DIR isn't visible to HYPRE")
-      endif()
-    else()
-      list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_UMPIRE:BOOL=OFF)
-      message(WARNING
-"================================================================================
- Umpire is disabled while building HYPRE with GPU support.
- This is not recommended for performance reasons!
- Consider enabling Umpire with -DMFEM_USE_UMPIRE=ON and providing -DUMPIRE_DIR.
-================================================================================")
-    endif()
-  endif()
-  if (MFEM_USE_SINGLE)
-    list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_SINGLE:BOOL=ON)
-  endif()
-  # define external project and create future include directory so it is present
-  # to pass CMake checks at end of MFEM configuration step
-  message(STATUS "Will fetch HYPRE ${HYPRE_FETCH_TAG} to be built with ${HYPRE_CMAKE_OPTIONS}")
-  set(HYPRE_INSTALL ${CMAKE_BINARY_DIR}/fetch/hypre)
-  include(ExternalProject)
-  ExternalProject_Add(hypre
-    GIT_REPOSITORY https://github.com/hypre-space/hypre.git
-    GIT_TAG ${HYPRE_FETCH_TAG}
-    GIT_SHALLOW TRUE
-    GIT_PROGRESS TRUE
-    UPDATE_DISCONNECTED TRUE
-    SOURCE_SUBDIR src
-    PREFIX ${HYPRE_INSTALL}
-    BUILD_COMMAND ${CMAKE_COMMAND} --build . -- -j${CMAKE_BUILD_PARALLEL_LEVEL}
-    CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${HYPRE_INSTALL} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${HYPRE_CMAKE_OPTIONS})
-  file(MAKE_DIRECTORY ${HYPRE_INSTALL}/include)
-  # set imported library target properties
-  add_dependencies(HYPRE hypre)
-  set_target_properties(HYPRE PROPERTIES
-    IMPORTED_LOCATION ${HYPRE_INSTALL}/lib/libHYPRE.a
-    INTERFACE_INCLUDE_DIRECTORIES ${HYPRE_INSTALL}/include)
-  # convert HYPRE version to integer
-  if (HYPRE_FETCH_TAG MATCHES "^v?([0-9]+)\\.([0-9]+)\\.([0-9]+)$")
-    # Exact release tag X.Y.Z
-    string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION "${HYPRE_FETCH_TAG}")
-  elseif (HYPRE_FETCH_VERSION MATCHES "([0-9]+)\\.([0-9]+)(\\.([0-9]+))?")
-    string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION "${HYPRE_FETCH_VERSION}")
-  else (NOT DEFINED HYPRE_VERSION)
-    message(FATAL_ERROR "Unable to find HYPRE release version. Please provide it via -DHYPRE_VERSION")
-  endif()
-  if (HYPRE_SPLIT_VERSION AND NOT DEFINED HYPRE_VERSION)
-    list(GET HYPRE_SPLIT_VERSION 0 HYPRE_MAJOR_VERSION)
-    list(GET HYPRE_SPLIT_VERSION 1 HYPRE_MINOR_VERSION)
-    if (HYPRE_SPLIT_VERSION GREATER 2)
-      list(GET HYPRE_SPLIT_VERSION 2 HYPRE_PATCH_VERSION)
-    else()
-      set(HYPRE_PATCH_VERSION 0)
-    endif()
-    math(EXPR HYPRE_VERSION "10000*${HYPRE_MAJOR_VERSION} + 100*${HYPRE_MINOR_VERSION} + ${HYPRE_PATCH_VERSION}")
-    set(HYPRE_VERSION ${HYPRE_VERSION} CACHE STRING "HYPRE version." FORCE)
   endif()
   return()
 endif()
@@ -175,13 +77,11 @@ endif()
 
 if (HYPRE_FOUND AND HYPRE_USING_CUDA)
   find_package(CUDAToolkit REQUIRED)
-  # Initialize CUSPARSE_LIBRARIES, CURAND_LIBRARIES, and CUBLAS_LIBRARIES:
-  mfem_culib_set_libraries(CUSPARSE cusparse)
-  mfem_culib_set_libraries(CURAND curand)
-  mfem_culib_set_libraries(CUBLAS cublas)
-  mfem_culib_set_libraries(CUSOLVER cusolver)
+  get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
+  get_target_property(CURAND_LIBRARIES CUDA::curand LOCATION)
+  get_target_property(CUBLAS_LIBRARIES CUDA::cublas LOCATION)
   list(APPEND HYPRE_LIBRARIES ${CUSPARSE_LIBRARIES} ${CURAND_LIBRARIES}
-       ${CUBLAS_LIBRARIES} ${CUSOLVER_LIBRARIES})
+       ${CUBLAS_LIBRARIES})
   set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
       "HYPRE libraries + dependencies." FORCE)
   message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
@@ -190,13 +90,8 @@ endif()
 if (HYPRE_FOUND AND HYPRE_USING_HIP)
   find_package(rocsparse REQUIRED)
   find_package(rocrand REQUIRED)
-  find_package(rocsolver REQUIRED)
-  list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES} roc::rocsolver roc::rocblas)
+  list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES})
   set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
       "HYPRE libraries + dependencies." FORCE)
   message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
 endif()
-
-find_package_handle_standard_args(HYPRE
-  REQUIRED_VARS HYPRE_LIBRARIES HYPRE_INCLUDE_DIRS HYPRE_VERSION
-)

config/cmake/modules/FindMAGMA.cmake

@@ -19,10 +19,8 @@ mfem_find_package(MAGMA MAGMA MAGMA_DIR "include" "magma.h" "lib" "magma"
   "Paths to headers required by MAGMA." "Libraries required by MAGMA.")
 
 if (MAGMA_FOUND AND MFEM_USE_CUDA)
-  find_package(CUDAToolkit REQUIRED)
-  # Initialize CUSPARSE_LIBRARIES and CUBLAS_LIBRARIES:
-  mfem_culib_set_libraries(CUSPARSE cusparse)
-  mfem_culib_set_libraries(CUBLAS cublas)
+  get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
+  get_target_property(CUBLAS_LIBRARIES CUDA::cublas LOCATION)
   list(APPEND MAGMA_LIBRARIES ${CUSPARSE_LIBRARIES} ${CUBLAS_LIBRARIES})
   set(MAGMA_LIBRARIES ${MAGMA_LIBRARIES} CACHE STRING
       "MAGMA libraries + dependencies." FORCE)

config/cmake/modules/FindMETIS.cmake

@@ -9,39 +9,10 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# Defines the following variables if fetching of TPLs is disabled (default):
+# Defines the following variables:
 #   - METIS_FOUND
 #   - METIS_LIBRARIES
 #   - METIS_INCLUDE_DIRS
-#   - METIS_VERSION_5
-# otherwise, the following are defined:
-#   - METIS (imported library target)
-#   - METIS_VERSION_5 (cache variable)
-
-if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
-  set(METIS_FETCH_VERSION 4.0.3)
-  add_library(METIS STATIC IMPORTED)
-  # define external project
-  message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with default options")
-  set(PREFIX ${CMAKE_BINARY_DIR}/fetch/metis)
-  include(ExternalProject)
-  ExternalProject_Add(metis
-    GIT_REPOSITORY https://github.com/mfem/tpls
-    GIT_TAG b60352fbe9675d374b00828055e55be4584c7995 # tag from 1/16/25
-    GIT_SHALLOW TRUE
-    UPDATE_DISCONNECTED TRUE
-    PREFIX ${PREFIX}
-    CONFIGURE_COMMAND tar -xzf ../metis/metis-${METIS_FETCH_VERSION}-mac.tgz --strip=1
-    BUILD_COMMAND $(MAKE) COPTIONS=-Wno-incompatible-pointer-types
-    INSTALL_COMMAND mkdir -p ${PREFIX}/lib && cp libmetis.a ${PREFIX}/lib/)
-  # set imported library target properties
-  add_dependencies(METIS metis)
-  set_target_properties(METIS PROPERTIES
-    IMPORTED_LOCATION ${PREFIX}/lib/libmetis.a)
-  # set cache variables that would otherwise be set after mfem_find_package call
-  set(METIS_VERSION_5 FALSE CACHE BOOL "Is METIS version 5?")
-  return()
-endif()
 
 include(MfemCmakeUtilities)
 mfem_find_package(METIS METIS METIS_DIR "include;Lib" "metis.h"

config/cmake/modules/MfemCmakeUtilities.cmake

@@ -123,10 +123,15 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
 
   # If CUDA is enabled, tag source files to be compiled with nvcc.
   if (MFEM_USE_CUDA)
-    set_source_files_properties(${MAIN_LIST} ${EXTRA_SOURCES_LIST}
-      PROPERTIES LANGUAGE CUDA)
-    if (MFEM_CUDA_COMPILER_IS_NVCC)
+    set_source_files_properties(${MAIN_LIST} ${EXTRA_SOURCES_LIST} PROPERTIES LANGUAGE CUDA)
+    if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.12.0)
       list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
+    else()
+      set(LIST_)
+      foreach(item IN LISTS EXTRA_OPTIONS_LIST)
+        list(APPEND LIST_ "-Xcompiler=${item}")
+      endforeach()
+      set(EXTRA_OPTIONS_LIST ${LIST_})
     endif()
   endif()
 
@@ -152,21 +157,6 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
   endif()
 endmacro()
 
-# Macro for setting variables like '<culib>_LIBRARIES' where <culib> is a CUDA
-# library like cublas. This macro assumes that the CUDAToolkit module was loaded
-# successfully. Example usage:
-#   mfem_culib_set_libraries(CUBLAS cublas)
-macro(mfem_culib_set_libraries _CULIB _culib)
-  # The following command does not work with older CMake versions, e.g. 3.20:
-  #   get_target_property(${_CULIB}_LIBRARIES CUDA::${_culib} LOCATION)
-  # Therefore, we use the respective internal variable:
-  set(${_CULIB}_LIBRARIES ${CUDA_${_culib}_LIBRARY})
-  if (NOT ${_CULIB}_LIBRARIES)
-    message(FATAL_ERROR
-      "Error setting ${_CULIB}_LIBRARIES: ${${_CULIB}_LIBRARIES}")
-  endif()
-endmacro()
-
 
 # Auxiliary function, used in mfem_find_package().
 function(mfem_find_component Prefix DirVar IncSuffixes Header LibSuffixes Lib
@@ -718,7 +708,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
   get_target_property(IsImported ${tgt} IMPORTED)
   # message(STATUS "${tgt}[IMPORTED]: ${IsImported}")
   # Generally, the possible target types are: STATIC_LIBRARY, MODULE_LIBRARY,
-  # SHARED_LIBRARY, INTERFACE_LIBRARY, UNKNOWN_LIBRARY, EXECUTABLE.
+  # SHARED_LIBRARY, INTERFACE_LIBRARY, EXECUTABLE.
   get_target_property(type ${tgt} TYPE)
   # message(STATUS "${tgt}[TYPE]: ${type}")
   unset(ImportConfig)
@@ -766,7 +756,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
     else()
       message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
     endif()
-  elseif ("${type}" STREQUAL "SHARED_LIBRARY" OR "${type}" STREQUAL "UNKNOWN_LIBRARY")
+  elseif ("${type}" STREQUAL "SHARED_LIBRARY")
     get_target_property(Location ${tgt} LOCATION)
     if (Location)
       get_filename_component(Dir ${Location} DIRECTORY)
@@ -879,8 +869,7 @@ function(mfem_export_mk_files)
       MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER MFEM_USE_UMPIRE MFEM_USE_SIMD
       MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO MFEM_USE_MKL_PARDISO
       MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
-      MFEM_USE_TRIBOL MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME
-      MFEM_USE_HDF5)
+      MFEM_USE_TRIBOL MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
   foreach(var ${CONFIG_MK_BOOL_VARS})
     if (${var})
       set(${var} YES)
@@ -932,14 +921,12 @@ function(mfem_export_mk_files)
   endif()
   set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
   set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
-  # For the next 4 variables, these are the values for the build-tree version of
+  # For the next 4 variable, these are the values for the build-tree version of
   # 'config.mk'
   set(MFEM_INC_DIR "${PROJECT_BINARY_DIR}")
   set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
   set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
   set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
-  # TODO: CUDA/HIP support:
-  set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
   set(MFEM_MPIEXEC ${MPIEXEC})
   if (NOT MFEM_MPIEXEC)
     set(MFEM_MPIEXEC "mpirun")

config/cmake/modules/ResolveCompilerPaths.cmake

@@ -93,17 +93,17 @@ macro (RESOLVE_LIBRARIES LIBS LINK_LINE)
         set (_directory_list ${_directory_list} ${libpath})
         set (token ${libname})
       endif (token MATCHES "^/")
-      set (_lib "NOTFOUND")
+      set (_lib "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
       find_library (_lib ${token} HINTS ${_directory_list} ${_root})
       if (_lib)
-        string (REPLACE "//" "/" _lib ${_lib})
+	string (REPLACE "//" "/" _lib ${_lib})
         list (APPEND _libs_found ${_lib})
       else (_lib)
         message (STATUS "Unable to find library ${token}")
       endif (_lib)
-      unset(_lib CACHE)
     endif (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
   endforeach (token)
+  set (_lib "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
   # only the LAST occurrence of each library is required since there should be no circular dependencies
   if (_libs_found)
     list (REVERSE _libs_found)

config/config.hpp

@@ -23,14 +23,11 @@
 #include "_config.hpp"
 #endif
 
-#include <cstdint>
-#include <climits>
-
 namespace mfem
 {
 
 #if (defined(MFEM_USE_CUDA) && defined(__CUDACC__)) || \
-    (defined(MFEM_USE_HIP) && defined(__HIP__))
+    (defined(MFEM_USE_HIP) && defined(__HIPCC__))
 #define MFEM_HOST_DEVICE __host__ __device__
 #else
 #define MFEM_HOST_DEVICE

config/config.hpp.in

@@ -132,9 +132,6 @@
 // Enable Conduit support.
 // #define MFEM_USE_CONDUIT
 
-// Enable functionality based on the HDF5 library
-// #define MFEM_USE_HDF5
-
 // Enable functionality based on the NetCDF library (reading CUBIT files).
 // #define MFEM_USE_NETCDF
 

config/config.mk.in

@@ -40,7 +40,6 @@ MFEM_USE_GINKGO        = @MFEM_USE_GINKGO@
 MFEM_USE_AMGX          = @MFEM_USE_AMGX@
 MFEM_USE_MAGMA         = @MFEM_USE_MAGMA@
 MFEM_USE_GNUTLS        = @MFEM_USE_GNUTLS@
-MFEM_USE_HDF5          = @MFEM_USE_HDF5@
 MFEM_USE_NETCDF        = @MFEM_USE_NETCDF@
 MFEM_USE_PETSC         = @MFEM_USE_PETSC@
 MFEM_USE_SLEPC         = @MFEM_USE_SLEPC@
@@ -88,7 +87,6 @@ MFEM_BUILD_TAG = @MFEM_BUILD_TAG@
 MFEM_PREFIX    = @MFEM_PREFIX@
 MFEM_INC_DIR   = @MFEM_INC_DIR@
 MFEM_LIB_DIR   = @MFEM_LIB_DIR@
-MFEM_XLINKER   = @MFEM_XLINKER@
 
 # Location of test.mk
 MFEM_TEST_MK = @MFEM_TEST_MK@
@@ -99,7 +97,7 @@ MFEM_MPIEXEC_NP = @MFEM_MPIEXEC_NP@
 MFEM_MPI_NP     = @MFEM_MPI_NP@
 
 # The NVCC compiler cannot link with -x=cu
-MFEM_LINK_FLAGS := $(filter-out -x=cu -xcuda -xhip, $(MFEM_FLAGS))
+MFEM_LINK_FLAGS := $(filter-out -x=cu -xhip, $(MFEM_FLAGS))
 
 # Optional extra configuration
 @MFEM_CONFIG_EXTRA@

config/defaults.cmake

@@ -43,7 +43,6 @@ option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
 option(MFEM_USE_MAGMA "Enable MAGMA usage" OFF)
 option(MFEM_USE_GNUTLS "Enable GNUTLS usage" OFF)
 option(MFEM_USE_GSLIB "Enable GSLIB usage" OFF)
-option(MFEM_USE_HDF5 "Enable HDF5 usage" OFF)
 option(MFEM_USE_NETCDF "Enable NETCDF usage" OFF)
 option(MFEM_USE_PETSC "Enable PETSc support." OFF)
 option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
@@ -89,13 +88,6 @@ option(MFEM_ENABLE_EXAMPLES "Build all of the examples" OFF)
 option(MFEM_ENABLE_MINIAPPS "Build all of the miniapps" OFF)
 option(MFEM_ENABLE_BENCHMARKS "Build all of the benchmarks" OFF)
 
-# Allow a user to specify fetching of certain third-party libraries instead of
-# searching for existing installations.
-option(MFEM_FETCH_TPLS "Enable fetching of all supported third-party libraries" OFF)
-option(MFEM_FETCH_GSLIB "Enable fetching of GSLIB" OFF)
-option(MFEM_FETCH_HYPRE "Enable fetching of hypre" OFF)
-option(MFEM_FETCH_METIS "Enable fetching of METIS" OFF)
-
 # Setting CXX/MPICXX on the command line or in user.cmake will overwrite the
 # autodetected C++ compiler.
 # set(CXX g++)
@@ -275,8 +267,6 @@ set(TRIBOL_DIR "${MFEM_DIR}/../tribol" CACHE PATH "Path to Tribol")
 set(Tribol_REQUIRED_PACKAGES "Axom/core/mint/slam/slic" CACHE STRING
     "Additional packages required by Tribol")
 
-set(ENZYME_DIR "${MFEM_DIR}/../enzyme" CACHE PATH "Path to Enzyme")
-
 set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
 set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
 set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")

config/defaults.mk

@@ -18,14 +18,13 @@
 # Some choices below are based on the OS type:
 NOTMAC := $(subst Darwin,,$(shell uname -s))
 
-ASTYLE_BIN = astyle
 ETAGS_BIN = $(shell command -v etags 2> /dev/null)
 EGREP_BIN = $(shell command -v egrep 2> /dev/null)
 
 CXX = g++
 MPICXX = mpicxx
 
-BASE_FLAGS  = -std=c++17
+BASE_FLAGS  = -std=c++11
 OPTIM_FLAGS = -O3 $(BASE_FLAGS)
 DEBUG_FLAGS = -g $(XCOMPILER)-Wall $(BASE_FLAGS)
 
@@ -44,23 +43,12 @@ SHARED = NO
 
 # CUDA configuration options
 #
-# If you set MFEM_USE_ENZYME=YES, must use CUDA_CXX=clang++
+# If you set MFEM_USE_ENZYME=YES, CUDA_CXX has to be configured to use cuda with
+# clang as its host compiler.
 CUDA_CXX = nvcc
 CUDA_ARCH = sm_60
-# Base CUDA install directory, only needed if building with clang+cuda:
-# The default setting is:
-# 1. If CUDA_HOME is defined and non-empty, use that.
-# 2. If nvcc is in the path, use the directory two levels up from that.
-# 3. Use /usr/local/cuda
-CUDA_DIR = $(or $(CUDA_HOME),$(patsubst %/,%,$(dir \
- $(patsubst %/,%,$(dir $(shell command -v nvcc))))),/usr/local/cuda)
-# flags for clang+cuda
-CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) --cuda-gpu-arch=$(CUDA_ARCH)
-# flags for nvcc
-NVCC_FLAGS = -x=cu --expt-extended-lambda --expt-relaxed-constexpr \
- -arch=$(CUDA_ARCH) -isystem "$(CUDA_DIR)/include"
-# Prefixes for passing flags to the host compiler and linker when using
-# CUDA_CXX=nvcc
+CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
+# Prefixes for passing flags to the host compiler and linker when using CUDA_CXX
 CUDA_XCOMPILER = -Xcompiler=
 CUDA_XLINKER   = -Xlinker=
 
@@ -157,7 +145,6 @@ MFEM_USE_GINKGO        = NO
 MFEM_USE_AMGX          = NO
 MFEM_USE_MAGMA         = NO
 MFEM_USE_GNUTLS        = NO
-MFEM_USE_HDF5          = NO
 MFEM_USE_NETCDF        = NO
 MFEM_USE_PETSC         = NO
 MFEM_USE_SLEPC         = NO
@@ -239,7 +226,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
 HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
 ifeq (YES,$(MFEM_USE_CUDA))
    # This is only necessary when hypre is built with cuda:
-   HYPRE_LIB += -lcusolver -lcusparse -lcurand -lcublas
+   HYPRE_LIB += -lcusparse -lcurand -lcublas
 endif
 ifeq (YES,$(MFEM_USE_HIP))
    # This is only necessary when hypre is built with hip:
@@ -254,7 +241,7 @@ ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK)$(MFEM_USE_MUMPS),NONONO)
      METIS_OPT =
      METIS_LIB = -L$(METIS_DIR) -lmetis
    else
-     METIS_DIR = @MFEM_DIR@/../metis-5.1.0
+     METIS_DIR = @MFEM_DIR@/../metis-5.0
      METIS_OPT = -I$(METIS_DIR)/include
      METIS_LIB = -L$(METIS_DIR)/lib -lmetis
    endif
@@ -408,20 +395,15 @@ AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
 # MAGMA library configuration
 MAGMA_DIR = @MFEM_DIR@/../magma
 MAGMA_OPT = -I$(MAGMA_DIR)/include
-MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a $(LAPACK_LIB)
+MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a -lcublas -lcusparse $(LAPACK_LIB)
 
 # GnuTLS library configuration
 GNUTLS_OPT =
 GNUTLS_LIB = -lgnutls
 
-# HDF5 library configuration
-HDF5_DIR   = $(HOME)/local
-HDF5_OPT = -I$(HDF5_DIR)/include
-HDF5_LIB = $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib -lhdf5_hl -lhdf5 \
-           $(ZLIB_LIB)
-
 # NetCDF library configuration
 NETCDF_DIR = $(HOME)/local
+HDF5_DIR   = $(HOME)/local
 NETCDF_OPT = -I$(NETCDF_DIR)/include -I$(HDF5_DIR)/include $(ZLIB_OPT)
 NETCDF_LIB = $(XLINKER)-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
  $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
@@ -502,8 +484,8 @@ SIDRE_LIB = \
 # Note that PUMI_DIR is needed -- it is used to check for gmi_sim.h
 PUMI_DIR = @MFEM_DIR@/../pumi-2.1.0
 PUMI_OPT = -I$(PUMI_DIR)/include
-PUMI_LIB = -L$(PUMI_DIR)/lib64 -L$(PUMI_DIR)/lib -lpumi -lcrv -lma -lmds -lapf\
-   -lpcu -lgmi -lparma -llion -lmth -lapf_zoltan -lspr
+PUMI_LIB = -L$(PUMI_DIR)/lib -lpumi -lcrv -lma -lmds -lapf -lpcu -lgmi -lparma\
+   -llion -lmth -lapf_zoltan -lspr
 
 # HIOP
 HIOP_DIR = @MFEM_DIR@/../hiop/install
@@ -523,9 +505,6 @@ GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
 # CUDA library configuration
 CUDA_OPT =
 CUDA_LIB = -lcusparse -lcublas
-CLANG_CUDA_LIB = -L$(CUDA_DIR)/lib64 -L$(CUDA_DIR)/lib \
- $(XLINKER)-rpath,$(CUDA_DIR)/lib64,-rpath,$(CUDA_DIR)/lib \
- -lcudart -ldl -lrt -pthread
 
 # HIP library configuration
 HIP_OPT =
@@ -589,11 +568,7 @@ RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
 # UMPIRE library configuration
 UMPIRE_DIR = @MFEM_DIR@/../umpire
 UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
-UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -L$(UMPIRE_DIR)/lib64 -lumpire $(CAMP_LIB)
-ifdef FMT_DIR
-   UMPIRE_OPT += -I$(FMT_DIR)/include
-   UMPIRE_LIB += -L$(FMT_DIR)/lib -L$(FMT_DIR)/lib64 -lfmt
-endif
+UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
 
 # MKL CPardiso library configuration
 MKL_CPARDISO_DIR ?=
@@ -625,20 +600,29 @@ TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mi
    -laxom_slam -laxom_slic -laxom_core
 
 # Enzyme configuration
-ENZYME_DIR = @MFEM_DIR@/../enzyme
-ENZYME_PLUGIN = $(abspath $(wildcard $(subst \
-   @MFEM_DIR@,$(MFEM_DIR),$(ENZYME_DIR))/lib/ClangEnzyme-*.$(SO_EXT)))
-ifeq ($(MAKECMDGOALS)-$(MFEM_USE_ENZYME),config-YES)
-   ifeq ($(ENZYME_PLUGIN),)
-      $(error Unable to find the Enzyme pluging! Please set ENZYME_DIR)
-   endif
-   ifneq ($(words $(ENZYME_PLUGIN)),1)
-      $(error Multiple versions of the Enzyme pluging found! \
-              Please set ENZYME_PLUGIN directly)
-   endif
+
+# If you want to enable automatic differentiation at compile time, use the
+# options below, adapted to your configuration. To be more flexible, we
+# recommend using the Enzyme plugin during link time optimization. One option is
+# to add your options to the global compiler/linker flags like
+#
+# BASE_FLAGS += -flto
+# CXX_XLINKER += -fuse-ld=lld -Wl,--lto-legacy-pass-manager\
+#                -Wl,-mllvm=-load=$(ENZYME_DIR)/LLDEnzyme-$(ENZYME_VERSION).so -Wl,
+#
+ENZYME_DIR ?= @MFEM_DIR@/../enzyme
+ENZYME_VERSION ?= 14
+ENZYME_OPT = -fno-experimental-new-pass-manager -Xclang -load -Xclang $(ENZYME_DIR)/ClangEnzyme-$(ENZYME_VERSION).so
+ENZYME_LIB = ""
+
+# Google Benchmark, SUNDIALS >= 6.4.0, STRUMPACK, RAJA, UMPIRE, and Tribol require C++14:
+ifneq ($(filter YES,$(MFEM_USE_BENCHMARK) $(MFEM_USE_SUNDIALS) $(MFEM_USE_STRUMPACK) $(MFEM_USE_RAJA) $(MFEM_USE_UMPIRE) $(MFEM_USE_TRIBOL)),)
+    BASE_FLAGS = -std=c++14
+endif
+# Ginkgo requires C++17:
+ifeq ($(MFEM_USE_GINKGO),YES)
+   BASE_FLAGS = -std=c++17
 endif
-ENZYME_OPT = -fplugin=$(ENZYME_PLUGIN)
-ENZYME_LIB =
 
 # If YES, enable some informational messages
 VERBOSE = NO

config/docker/README.md

@@ -17,7 +17,7 @@ We provide two containers, which you can either build or use directly from
 
 In the above, "ghcr.io" means "GitHub Container Registry" and
 is the [GitHub packages](https://github.com/features/packages) registry that supports
-Docker images and other OCI artifacts.
+Docker images and other OCI artifacts. 
 
 ### Ubuntu
 
@@ -101,7 +101,7 @@ $ cd ../miniapps
 $ ls
 CMakeLists.txt  common            meshing  nurbs        shifted  toys
 adjoint         electromagnetics  mtop     parelag      solvers
-autodiff        gslib             fluids   performance  tools
+autodiff        gslib             navier   performance  tools
 ```
 
 And an example in "toys"
@@ -132,7 +132,7 @@ examples.
 
 > Use this build for a development environment with spack and mfem
 
-This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
+This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base), 
 however you can build it locally too:
 
 ```bash
@@ -197,7 +197,7 @@ Average reduction factor = 0.140201
 
 This container is likely ideal for someone that wants to develop mfem itself.
 For other use cases, we recommend using the slimmer image. As an example,
-if you want to develop with your own code base (and mfem as is in the container)
+if you want to develop with your own code base (and mfem as is in the container) 
 you can bind to somewhere else in the container (e.g., src)
 
 ```bash

config/sample-runs.sh

@@ -85,10 +85,6 @@ groups_serial=(
    "DPG miniapps:"
    "miniapps/dpg"
    "{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
-'"isf"
-   "Schrodinger flow miniapps:"
-   "miniapps/fluids/schrodinger-flow"
-   "schrodinger_flow.cpp"'
 '"gslib"
    "GSLIB miniapps:"
    "miniapps/gslib"
@@ -170,10 +166,6 @@ groups_parallel=(
    "miniapps/electromagnetics"
    "joule.cpp"'
 #   "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
-'"isf"
-   "Schrodinger flow miniapps:"
-   "miniapps/fluids/schrodinger-flow"
-   "pschrodinger_flow.cpp"'
 '"adjoint"
    "Adjoint miniapps:"
    "miniapps/adjoint"
@@ -199,7 +191,7 @@ groups_parallel=(
 # todo: miniapps/multidomain
 '"navier"
    "Navier miniapps:"
-   "miniapps/fluids/navier"
+   "miniapps/navier"
    "navier_cht.cpp"'
 # todo: add other navier miniapps
 '"nurbs"
@@ -289,10 +281,6 @@ groups_all=(
    "miniapps/electromagnetics"
    "joule.cpp"'
 #   "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
-'"isf"
-   "Schrodinger flow miniapps:"
-   "miniapps/fluids/schrodinger-flow"
-   "{,p}schrodinger_flow.cpp"'
 '"adjoint"
    "Adjoint miniapps:"
    "miniapps/adjoint"
@@ -320,7 +308,7 @@ groups_all=(
 # todo: miniapps/multidomain
 '"navier"
    "Navier miniapps:"
-   "miniapps/fluids/navier"
+   "miniapps/navier"
    "navier_cht.cpp"'
 # todo: add other navier miniapps
 '"nurbs"

config/vcpkg/ports/metis-mfem/cmake4.patch

@@ -1,20 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 186a320..39e5356 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -1,4 +1,4 @@
--cmake_minimum_required(VERSION 2.8)
-+cmake_minimum_required(VERSION 3.12.0...4.0.0)
- project(METIS)
- 
- set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/GKlib" CACHE PATH "path to GKlib")
-diff --git a/GKlib/CMakeLists.txt b/GKlib/CMakeLists.txt
-index 67b600a..44321a6 100644
---- a/GKlib/CMakeLists.txt
-+++ b/GKlib/CMakeLists.txt
-@@ -1,4 +1,4 @@
--cmake_minimum_required(VERSION 2.8)
-+cmake_minimum_required(VERSION 3.12.0...4.0.0)
- project(GKlib)
- 
- get_filename_component(abs "." ABSOLUTE)

config/vcpkg/ports/metis-mfem/portfile.cmake

@@ -22,7 +22,6 @@ vcpkg_extract_source_archive_ex(
         fix-linux-build-error.patch
         install-metisConfig.patch
         fix-INT_MIN_define.patch
-        cmake4.patch
 )
 
 vcpkg_configure_cmake(

data/channel-bifurcation-2d.mesh

@@ -1,156 +0,0 @@
-MFEM mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-# PYRAMID     = 7
-#
-
-dimension
-2
-
-elements
-25
-3 3 0 1 2 3
-3 3 1 4 5 2
-3 3 4 6 7 5
-3 3 6 8 9 7
-3 3 8 10 11 9
-3 3 10 12 13 11
-3 3 12 14 15 13
-3 3 14 16 17 15
-3 3 16 18 19 17
-3 3 18 20 21 19
-3 3 20 22 23 21
-3 3 22 24 25 23
-3 3 24 26 27 25
-3 3 26 28 29 27
-3 3 28 30 31 29
-3 3 30 32 33 31
-3 3 32 34 35 33
-3 3 17 19 36 37
-3 3 37 36 38 39
-3 3 39 38 40 41
-3 3 41 40 42 43
-3 3 43 42 44 45
-3 3 45 44 46 47
-3 3 47 46 48 49
-3 3 49 48 50 51
-
-boundary
-52
-2 1 0 1
-2 1 2 3
-1 1 3 0
-2 1 1 4
-2 1 5 2
-2 1 4 6
-2 1 7 5
-2 1 6 8
-2 1 9 7
-2 1 8 10
-2 1 11 9
-2 1 10 12
-2 1 13 11
-2 1 12 14
-2 1 15 13
-2 1 14 16
-2 1 17 15
-2 1 16 18
-2 1 18 20
-2 1 21 19
-2 1 20 22
-2 1 23 21
-2 1 22 24
-2 1 25 23
-2 1 24 26
-2 1 27 25
-2 1 26 28
-2 1 29 27
-2 1 28 30
-2 1 31 29
-2 1 30 32
-2 1 33 31
-2 1 32 34
-3 1 34 35
-2 1 35 33
-2 1 19 36
-2 1 37 17
-2 1 36 38
-2 1 39 37
-2 1 38 40
-2 1 41 39
-2 1 40 42
-2 1 43 41
-2 1 42 44
-2 1 45 43
-2 1 44 46
-2 1 47 45
-2 1 46 48
-2 1 49 47
-2 1 48 50
-4 1 50 51
-2 1 51 49
-
-vertices
-52
-2
-0 0
-1 0
-1 1
-0 1
-2 0
-2 1
-3 0
-3 1
-4 0
-4 1
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-6 0
-6 1
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-8 4
-9 5
-8 5
-9 6
-8 6
-9 7
-8 7
-9 8
-8 8
-9 9
-8 9

data/equilateral-pyramid.mesh

@@ -1,38 +0,0 @@
-MFEM mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-# PYRAMID     = 7
-#
-
-dimension
-3
-
-elements
-1
-1 7 0 1 2 3 4
-
-boundary
-5
-1 3 3 2 1 0
-2 2 0 1 4
-3 2 1 2 4
-4 2 2 3 4
-5 2 3 0 4
-
-vertices
-5
-3
--0.5 -0.5 0
-0.5 -0.5 0
-0.5 0.5 0
--0.5 0.5 0
-0 0 0.7071067811865475

data/escher-p2.mesh

@@ -115,7 +115,7 @@ vertices
 
 nodes
 FiniteElementSpace
-FiniteElementCollection: H1_3D_P2
+FiniteElementCollection: Quadratic
 VDim: 3
 Ordering: 0
 

data/fichera-mixed-16.mesh

@@ -1,108 +0,0 @@
-MFEM mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-# PYRAMID     = 7
-#
-
-dimension
-3
-
-elements
-16
-1 5 12 13 16 15 21 22 25 24
-1 6  9 12  8 18 21 17
-1 6 11  8 12 20 17 21
-1 6  3  2 12  6  5 15
-1 6 11 12  2 14 15  5
-1 6  3 12  0  4 13  1
-1 6  9  0 12 10  1 13
-1 7 12 13 22 21 19
-1 7 15 16 13 12  7
-1 7 12 21 24 15 23
-1 7  9 12 21 18 19
-1 7 11 20 21 12 23
-1 7  9 10 13 12 19
-1 7 11 12 15 14 23
-1 7  3  6 15 12  7
-1 7  3 12 13  4  7
-
-boundary
-39
- 1 3  5  6  3  2
- 2 2  6  7  3
- 2 2  7  4  3
- 3 3  3  4  1  0
- 4 2 11 12  8
- 4 2  9  8 12
- 5 2  3 12  2
- 5 2 11  2 12
- 6 3  0  1 10  9
- 7 2 10 19  9
- 7 2 18  9 19
- 8 3  8  9 18 17
- 9 2  4 13  1
- 9 2 10  1 13
-10 2  4  7 13
-10 2 16 13  7
-11 3 13 16 25 22
-12 2 10 13 19
-12 2 22 19 13
-13 2  6 15  7
-13 2 16  7 15
-14 2  6  5 15
-14 2 14 15  5
-15 2 14 23 15
-15 2 24 15 23
-16 3 16 15 24 25
-17 3  5  2 11 14
-18 2  3  0 12
-18 2  9 12  0
-19 3 11  8 17 20
-20 2 14 11 23
-20 2 20 23 11
-21 2 18 21 17
-21 2 20 17 21
-22 2 18 19 21
-22 2 22 21 19
-23 3 21 22 25 24
-24 2 20 21 23
-24 2 24 23 21
-
-vertices
-26
-3
-0 -1 -1
-1 -1 -1
--1 0 -1
-0 0 -1
-1 0 -1
--1 1 -1
-0 1 -1
-1 1 -1
--1 -1 0
-0 -1 0
-1 -1 0
--1 0 0
-0 0 0
-1 0 0
--1 1 0
-0 1 0
-1 1 0
--1 -1 1
-0 -1 1
-1 -1 1
--1 0 1
-0 0 1
-1 0 1
--1 1 1
-0 1 1
-1 1 1

data/fichera-q2.mesh

@@ -56,7 +56,7 @@ vertices
 
 nodes
 FiniteElementSpace
-FiniteElementCollection: H1_3D_P2
+FiniteElementCollection: Quadratic
 VDim: 3
 Ordering: 0
 

data/inline-pyramid.mesh

@@ -1,9 +1,9 @@
 MFEM INLINE mesh v1.0
 
 type = pyramid
-nx = 2
-ny = 2
-nz = 2
+nx = 4
+ny = 4
+nz = 4
 sx = 1.0
 sy = 1.0
 sz = 1.0

data/mfem.mesh

@@ -1,593 +0,0 @@
-MFEM mesh v1.0
-
-# Created by: Pointwise
-
-# MFEM Geometry Types:
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-
-dimension
-2
-
-elements
-160
-1 3 1 164 163 0
-1 3 164 165 162 163
-1 3 2 166 164 1
-1 3 166 132 165 164
-1 3 3 167 166 2
-1 3 167 131 132 166
-1 3 4 168 167 3
-1 3 168 130 131 167
-1 3 5 169 168 4
-1 3 169 129 130 168
-1 3 6 170 169 5
-1 3 170 128 129 169
-1 3 171 172 170 6
-1 3 172 127 128 170
-1 3 124 125 172 171
-1 3 125 126 127 172
-1 3 162 165 173 161
-1 3 165 132 133 173
-1 3 161 173 174 160
-1 3 173 133 134 174
-1 3 160 174 175 159
-1 3 174 134 135 175
-1 3 6 7 176 171
-1 3 7 8 177 176
-1 3 171 176 123 124
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-1 3 175 135 136 178
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-1 3 157 179 180 156
-1 3 179 137 138 180
-1 3 122 177 181 121
-1 3 177 8 182 181
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-1 3 9 10 184 183
-1 3 10 11 185 184
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-1 3 181 182 118 119
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data/nc-nurbs3d.mesh

@@ -1,342 +0,0 @@
-MFEM NURBS NC-patch mesh v1.0
-dimension
-3
-
-elements
-13
-0 1 5 0 8 10 11 9 4 6 7 5
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-
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-vertex_to_knotspan
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-FiniteElementSpace
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data/nc3-nurbs.mesh

@@ -1,96 +0,0 @@
-MFEM NURBS NC-patch mesh v1.0
-dimension
-2
-
-# rank attr geom ref_type nodes/children
-elements
-3
-0 1 3 0 0 4 5 1
-0 1 3 0 6 7 4 2
-0 1 3 0 6 3 5 7
-
-# attr geom nodes
-boundary
-7
-1 1 0 4
-1 1 5 1
-1 1 1 0
-1 1 2 6
-1 1 6 3
-1 1 4 2
-1 1 5 3
-
-vertex_to_knotspan
-1
-7 1 4 5
-
-# top-level node coordinates
-coordinates
-8
-2
-0 0
-0 1
-2 0
-2 1
-1 0
-1 1
-2 0.5
-1 0.5
-
-edges
-11
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-1 4 5
-0 1 5
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-2 6 7
-4 7 4
-2 2 4
-4 6 2
-3 6 3
-2 3 5
-3 7 5
-
-knotvectors
-5
-1 3 0 0 0.5 1 1
-1 3 0 0 0.5 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-
-spacing
-0
-
-weights
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-FiniteElementSpace
-FiniteElementCollection: NURBS1
-VDim: 2
-Ordering: 1
-
-0 0
-0 1
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-1 0
-1 1
-2 0.5
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-0.5 0.5
-mfem_mesh_end

data/nurbs-segments2d-patches-multispan.mesh

@@ -1,86 +0,0 @@
-MFEM NURBS mesh v1.0
-
-dimension
-1
-
-# Four segments with different NURBS orders, described via patches.
-elements
-4
-1 1 0 1
-2 1 2 3
-3 1 4 5
-4 1 6 7
-
-boundary
-0
-
-edges
-4
-0 0 1
-1 2 3
-2 4 5
-3 6 7
-
-vertices
-8
-
-patches
-
-# Patch 0: linear (order 1, 3 spans)
-knotvectors
-1
-1 4  0 0  .4 .6 1 1
-
-dimension
-2
-
-controlpoints
-0.0  0.0  1.0
-0.6  0.4  1.0
-0.4  0.6  1.0
-1.0  1.0  1.0
-
-# Patch 1: quadratic (order 2, 2 spans)
-knotvectors
-1
-2 4  0 0 0  .5 1 1 1
-
-dimension
-2
-
-controlpoints
-1.0  0.0  1.0
-1.9  0.0  1.21
-2.0  0.9  1.22
-2.0  1.0  1.0
-
-# Patch 2: cubic (order 3, 3 spans)
-knotvectors
-1
-3 6  0 0 0 0 .33 .66 1 1 1 1
-
-dimension
-2
-
-controlpoints
-2.0   0.0  1.0
-2.1   0.2  1.31
-3.5   0.4  1.32
-2.5   0.6  1.33
-2.9   1.0  1.34
-3.0   1.0  1.0
-
-# Patch 3: quartic (order 4, 1 span)
-knotvectors
-1
-4 5  0 0 0 0 0 1 1 1 1 1
-
-dimension
-2
-
-controlpoints
-3.0    0.0  1.0
-3.45   0.5  1.41
-3.50   1.0  1.42
-3.75   0.8  1.43
-4.0    0.0  1.0

data/nurbs-segments2d-patches.mesh

@@ -1,79 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-# Three segments with different NURBS orders, described via patches.
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-patches
-
-# Patch 0: linear (order 1, 2 control points)
-knotvectors
-1
-1 2  0 0  1 1
-
-dimension
-2
-
-controlpoints
-0.0  0.0  1.0
-1.0  1.0  1.0
-
-# Patch 1: quadratic (order 2, 3 control points)
-knotvectors
-1
-2 3  0 0 0  1 1 1
-
-dimension
-2
-
-controlpoints
-1.0  0.0   1.0
-1.02 1.02  1.2
-2.0  1.0   1.0
-
-# Patch 2: cubic (order 3, 4 control points)
-knotvectors
-1
-3 4  0 0 0 0  1 1 1 1
-
-dimension
-2
-
-controlpoints
-2.0   0.0   1.0
-2.03  0.83  1.31
-2.33  1.03  1.32
-3.0   1.0   1.0
-

data/nurbs-segments2d.mesh

@@ -1,72 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-# Edge 0: linear (order 1, 2 control points)
-# Edge 1: quadratic (order 2, 3 control points)
-# Edge 2: cubic (order 3, 4 control points)
-knotvectors
-3
-1 2  0 0  1 1
-2 3  0 0 0  1 1 1
-3 4  0 0 0 0  1 1 1 1
-
-# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
-weights
-1
-1
-1
-1
-1
-1
-1.2
-1.31
-1.32
-
-FiniteElementSpace
-FiniteElementCollection: NURBS
-VDim: 2
-Ordering: 1
-
-0.0  0.0
-1.0  1.0
-1.0  0.0
-2.0  1.0
-2.0  0.0
-3.0  1.0
-1.02 1.02
-2.03 0.83
-2.33 1.03

data/nurbs-segments3d-patches.mesh

@@ -1,79 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-# Three segments with different NURBS orders, described via patches.
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-patches
-
-# Patch 0: linear (order 1, 2 control points)
-knotvectors
-1
-1 2  0 0  1 1
-
-dimension
-3
-
-controlpoints
-0.0  0.0  0.01 1.0
-1.0  1.0  1.01 1.0
-
-# Patch 1: quadratic (order 2, 3 control points)
-knotvectors
-1
-2 3  0 0 0  1 1 1
-
-dimension
-3
-
-controlpoints
-1.0  0.0   0.02 1.0
-1.02 1.02  0.52 1.2
-2.0  1.0   1.02 1.0
-
-# Patch 2: cubic (order 3, 4 control points)
-knotvectors
-1
-3 4  0 0 0 0  1 1 1 1
-
-dimension
-3
-
-controlpoints
-2.0   0.0   0.03 1.0
-2.03  0.83  0.33 1.31
-2.33  1.03  0.63 1.32
-3.0   1.0   1.03 1.0
-

data/nurbs-segments3d.mesh

@@ -1,72 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-# Edge 0: linear (order 1, 2 control points)
-# Edge 1: quadratic (order 2, 3 control points)
-# Edge 2: cubic (order 3, 4 control points)
-knotvectors
-3
-1 2  0 0  1 1
-2 3  0 0 0  1 1 1
-3 4  0 0 0 0  1 1 1 1
-
-# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
-weights
-1
-1
-1
-1
-1
-1
-1.2
-1.31
-1.32
-
-FiniteElementSpace
-FiniteElementCollection: NURBS
-VDim: 3
-Ordering: 1
-
-0.0  0.0   0.01
-1.0  1.0   1.01
-1.0  0.0   0.02
-2.0  1.0   1.02
-2.0  0.0   0.03
-3.0  1.0   1.03
-1.02 1.02  0.52
-2.03 0.83  0.33
-2.33 1.03  0.63

data/square-disc-p2.mesh

@@ -227,7 +227,7 @@ vertices
 
 nodes
 FiniteElementSpace
-FiniteElementCollection: H1_2D_P2
+FiniteElementCollection: Quadratic
 VDim: 2
 Ordering: 0
 

data/star-q2.mesh

@@ -65,7 +65,7 @@ vertices
 
 nodes
 FiniteElementSpace
-FiniteElementCollection: H1_2D_P2
+FiniteElementCollection: Quadratic
 VDim: 2
 Ordering: 0
 

doc/CodeDocumentation.conf.in

@@ -48,7 +48,7 @@ PROJECT_NAME           = MFEM
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = v4.9.1
+PROJECT_NUMBER         = v4.7.1
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
@@ -951,11 +951,7 @@ INPUT                  = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
                          @MFEM_SOURCE_DIR@/fem/ceed/integrators/nlconvection \
                          @MFEM_SOURCE_DIR@/fem/ceed/interface \
                          @MFEM_SOURCE_DIR@/fem/ceed/solvers \
-                         @MFEM_SOURCE_DIR@/fem/dfem \
-                         @MFEM_SOURCE_DIR@/fem/eltrans \
                          @MFEM_SOURCE_DIR@/fem/fe \
-                         @MFEM_SOURCE_DIR@/fem/gslib \
-                         @MFEM_SOURCE_DIR@/fem/integ \
                          @MFEM_SOURCE_DIR@/fem/lor \
                          @MFEM_SOURCE_DIR@/fem/moonolith \
                          @MFEM_SOURCE_DIR@/fem/qinterp \
@@ -973,13 +969,7 @@ INPUT                  = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
                          @MFEM_SOURCE_DIR@/miniapps/adjoint \
                          @MFEM_SOURCE_DIR@/miniapps/autodiff \
                          @MFEM_SOURCE_DIR@/miniapps/common \
-                         @MFEM_SOURCE_DIR@/miniapps/contact \
-                         @MFEM_SOURCE_DIR@/miniapps/dfem \
-                         @MFEM_SOURCE_DIR@/miniapps/dpg \
-                         @MFEM_SOURCE_DIR@/miniapps/dpg/util \
                          @MFEM_SOURCE_DIR@/miniapps/electromagnetics \
-                         @MFEM_SOURCE_DIR@/miniapps/fluids/navier \
-                         @MFEM_SOURCE_DIR@/miniapps/fluids/schrodinger-flow \
                          @MFEM_SOURCE_DIR@/miniapps/gslib \
                          @MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
                          @MFEM_SOURCE_DIR@/miniapps/hooke \
@@ -990,15 +980,18 @@ INPUT                  = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
                          @MFEM_SOURCE_DIR@/miniapps/meshing \
                          @MFEM_SOURCE_DIR@/miniapps/mtop \
                          @MFEM_SOURCE_DIR@/miniapps/multidomain \
+                         @MFEM_SOURCE_DIR@/miniapps/navier \
                          @MFEM_SOURCE_DIR@/miniapps/nurbs \
                          @MFEM_SOURCE_DIR@/miniapps/parelag \
                          @MFEM_SOURCE_DIR@/miniapps/performance \
                          @MFEM_SOURCE_DIR@/miniapps/shifted \
                          @MFEM_SOURCE_DIR@/miniapps/solvers \
-                         @MFEM_SOURCE_DIR@/miniapps/spde \
                          @MFEM_SOURCE_DIR@/miniapps/tools \
                          @MFEM_SOURCE_DIR@/miniapps/toys \
-                         @MFEM_SOURCE_DIR@/miniapps/tribol
+                         @MFEM_SOURCE_DIR@/miniapps/tribol \
+                         @MFEM_SOURCE_DIR@/miniapps/spde \
+                         @MFEM_SOURCE_DIR@/miniapps/dpg \
+                         @MFEM_SOURCE_DIR@/miniapps/dpg/util
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses

doc/CodeDocumentation.dox

@@ -42,10 +42,10 @@ namespace mfem {
  * - mfem::forall functions in forall.hpp
  *
  * <H3>Example codes</H3>
- * - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Poisson problem
- * - <a class="el" href="ex0p_8cpp_source.html">Example 0p</a>: simplest parallel example, nodal H1 FEM for the Poisson problem
- * - <a class="el" href="examples_2ex1_8cpp_source.html">Example 1</a>: nodal H1 FEM for the Poisson problem (same discretization as ex0 but with more sophisticated options)
- * - <a class="el" href="examples_2ex1p_8cpp_source.html">Example 1p</a>: parallel nodal H1 FEM for the Poisson problem (same discretization as ex0p but with more sophisticated options)
+ * - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
+ * - <a class="el" href="ex0p_8cpp_source.html">Example 0p</a>: simplest parallel example, nodal H1 FEM for the Laplace problem
+ * - <a class="el" href="examples_2ex1_8cpp_source.html">Example 1</a>: nodal H1 FEM for the Laplace problem (same discretization as ex0 but with more sophisticated options)
+ * - <a class="el" href="examples_2ex1p_8cpp_source.html">Example 1p</a>: parallel nodal H1 FEM for the Laplace problem (same discretization as ex0p but with more sophisticated options)
  * - <a class="el" href="ex2_8cpp_source.html">Example 2</a>: vector FEM for linear elasticity
  * - <a class="el" href="ex2p_8cpp_source.html">Example 2p</a>: parallel vector FEM for linear elasticity
  * - <a class="el" href="ex3_8cpp_source.html">Example 3</a>: Nedelec H(curl) FEM for the definite Maxwell problem
@@ -54,12 +54,12 @@ namespace mfem {
  * - <a class="el" href="ex4p_8cpp_source.html">Example 4p</a>: parallel Raviart-Thomas H(div) FEM for the grad-div problem
  * - <a class="el" href="ex5_8cpp_source.html">Example 5</a>: mixed pressure-velocity FEM for the Darcy problem
  * - <a class="el" href="ex5p_8cpp_source.html">Example 5p</a>: parallel mixed pressure-velocity FEM for the Darcy problem
- * - <a class="el" href="ex6_8cpp_source.html">Example 6</a>: non-conforming adaptive mesh refinement for the Poisson problem
- * - <a class="el" href="ex6p_8cpp_source.html">Example 6p</a>: parallel non-conforming adaptive mesh refinement for the Poisson problem
- * - <a class="el" href="ex7_8cpp_source.html">Example 7</a>: screened Poisson problem on a surface (the unit sphere)
- * - <a class="el" href="ex7p_8cpp_source.html">Example 7p</a>: parallel screened Poisson problem on a surface (the unit sphere)
- * - <a class="el" href="ex8_8cpp_source.html">Example 8</a>: Discontinuous Petrov-Galerkin (DPG) for the Poisson problem
- * - <a class="el" href="ex8p_8cpp_source.html">Example 8p</a>: parallel Discontinuous Petrov-Galerkin (DPG) for the Poisson problem
+ * - <a class="el" href="ex6_8cpp_source.html">Example 6</a>: non-conforming adaptive mesh refinement for the Laplace problem
+ * - <a class="el" href="ex6p_8cpp_source.html">Example 6p</a>: parallel non-conforming adaptive mesh refinement for the Laplace problem
+ * - <a class="el" href="ex7_8cpp_source.html">Example 7</a>: Laplace problem on a surface (the unit sphere)
+ * - <a class="el" href="ex7p_8cpp_source.html">Example 7p</a>: parallel Laplace problem on a surface (the unit sphere)
+ * - <a class="el" href="ex8_8cpp_source.html">Example 8</a>: Discontinuous Petrov-Galerkin (DPG) for the Laplace problem
+ * - <a class="el" href="ex8p_8cpp_source.html">Example 8p</a>: parallel Discontinuous Petrov-Galerkin (DPG) for the Laplace problem
  * - <a class="el" href="ex9_8cpp_source.html">Example 9</a>: Discontinuous Galerkin (DG) time-dependent advection
  * - <a class="el" href="ex9p_8cpp_source.html">Example 9p</a>: parallel Discontinuous Galerkin (DG) time-dependent advection
  * - <a class="el" href="ex10_8cpp_source.html">Example 10</a>: time-dependent implicit nonlinear elasticity
@@ -67,8 +67,8 @@ namespace mfem {
  * - <a class="el" href="ex11p_8cpp_source.html">Example 11p</a>: parallel Laplace eigensolver
  * - <a class="el" href="ex12p_8cpp_source.html">Example 12p</a>: parallel linear elasticity eigensolver
  * - <a class="el" href="ex13p_8cpp_source.html">Example 13p</a>: parallel Maxwell eigensolver
- * - <a class="el" href="ex14_8cpp_source.html">Example 14</a>: Discontinuous Galerkin (DG) for the Poisson problem
- * - <a class="el" href="ex14p_8cpp_source.html">Example 14p</a>: parallel Discontinuous Galerkin (DG) for the Poisson problem
+ * - <a class="el" href="ex14_8cpp_source.html">Example 14</a>: Discontinuous Galerkin (DG) for the Laplace problem
+ * - <a class="el" href="ex14p_8cpp_source.html">Example 14p</a>: parallel Discontinuous Galerkin (DG) for the Laplace problem
  * - <a class="el" href="ex15_8cpp_source.html">Example 15</a>: dynamic AMR for Laplace with prescribed time-dependent source
  * - <a class="el" href="ex15p_8cpp_source.html">Example 15p</a>: parallel dynamic AMR for Laplace with prescribed time-dependent source
  * - <a class="el" href="ex16_8cpp_source.html">Example 16</a>: time-dependent nonlinear heat equation
@@ -90,8 +90,8 @@ namespace mfem {
  * - <a class="el" href="ex24p_8cpp_source.html">Example 24p</a>: parallel mixed finite element spaces and interpolators
  * - <a class="el" href="ex25_8cpp_source.html">Example 25</a>: simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
  * - <a class="el" href="ex25p_8cpp_source.html">Example 25p</a>: parallel simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
- * - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Poisson problem using nodal H1 FEM
- * - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Poisson problem using nodal H1 FEM
+ * - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Laplace problem using nodal H1 FEM
+ * - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Laplace problem using nodal H1 FEM
  * - <a class="el" href="ex27_8cpp_source.html">Example 27</a>: boundary conditions for the Laplace problem
  * - <a class="el" href="ex27p_8cpp_source.html">Example 27p</a>: parallel boundary conditions for the Laplace problem
  * - <a class="el" href="ex28_8cpp_source.html">Example 28</a>: sliding contact in elasticity
@@ -117,8 +117,6 @@ namespace mfem {
  * - <a class="el" href="ex39p_8cpp_source.html">Example 39p</a>: parallel named mesh attributes
  * - <a class="el" href="ex40_8cpp_source.html">Example 40</a>: eikonal equation
  * - <a class="el" href="ex40p_8cpp_source.html">Example 40p</a>: parallel eikonal equation
- * - <a class="el" href="ex41_8cpp_source.html">Example 41</a>: DG/CG IMEX time-dependent advection-diffusion
- * - <a class="el" href="ex41p_8cpp_source.html">Example 41p</a>: parallel DG/CG IMEX time-dependent advection-diffusion
  *
  * <H4>AmgX Examples</H4>
  * - Variants of Examples
@@ -190,8 +188,6 @@ namespace mfem {
  *  <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
  *  <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
  *  <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
- *  <a class="el" href="nurbs__ex10_8cpp_source.html">10</a>,
- *  <a class="el" href="nurbs__ex10p_8cpp_source.html">10p</a>,
  *  <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
  *  <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
  *   demonstrating howto perform NURBS-based Isogeometric Analysis.
@@ -200,14 +196,12 @@ namespace mfem {
  * - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
  * - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
  * - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
- * - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
  *
  * <H3>Miniapps</H3>
  * - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
  * - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
  * - <a class="el" href="maxwell_8cpp_source.html">Maxwell</a>: simple transient full-wave electromagnetics simulation code
  * - <a class="el" href="joule_8cpp_source.html">Joule</a>: transient magnetics and Joule heating miniapp
- * - <a class="el" href="lorentz_8cpp_source.html">Lorentz</a>: simple particle tracking code based on the Lorentz force
  * - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
  * - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
  * - <a class="el" href="klein-bottle_8cpp_source.html">Klein Bottle</a>: generate three types of Klein bottle surfaces
@@ -236,11 +230,10 @@ namespace mfem {
  * - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
  * - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
  * - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
- * - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Poisson problem
- * - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Poisson problem
+ * - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
+ * - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
  * - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
- * - <a class="el" href="contact-patch-test_8cpp_source.html">Tribol</a>: mortar contact patch test for elasticity
- * - <a class="el" href="contact_8cpp_source.html">Contact</a>: Frictionless contact examples using <a class="el" href="classmfem_1_1IPSolver.html#details">IP optimization</a> and the <a class="el" href="classmfem_1_1AMGFSolver.html#details">AMGF solver</a>
+ * - <a class="el" href="contact-patch-test_8cpp_source.html">Contact</a>: mortar contact patch test for elasticity
  * - <a class="el" href="multidomain_8cpp_source.html">Multidomain miniapp</a>: Multidomain and Submesh demonstration miniapp
  * - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
  * - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem

examples/CMakeLists.txt

@@ -46,7 +46,6 @@ list(APPEND ALL_EXE_SRCS
   ex38.cpp
   ex39.cpp
   ex40.cpp
-  ex41.cpp
   )
 
 if (MFEM_USE_MPI)
@@ -90,7 +89,6 @@ if (MFEM_USE_MPI)
     ex37p.cpp
     ex39p.cpp
     ex40p.cpp
-    ex41p.cpp
   )
 endif()
 
@@ -133,8 +131,6 @@ if (MFEM_ENABLE_TESTING)
       list(APPEND THIS_TEST_OPTIONS "-dg")
     elseif(${TEST_NAME} MATCHES "ex37p*")
       list(APPEND THIS_TEST_OPTIONS "-mi" "3")
-    elseif(${TEST_NAME} MATCHES "ex41p*")
-      list(APPEND THIS_TEST_OPTIONS "-tf" "1.0")
     endif()
 
     if (NOT (${TEST_NAME} MATCHES ".*p$"))
@@ -209,15 +205,6 @@ if (MFEM_ENABLE_TESTING)
       $<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
       ${MPIEXEC_POSTFLAGS})
   endif()
-
-  # Parallel libCEED example
-  if (MFEM_USE_CEED AND MFEM_USE_MPI)
-    add_test(NAME ex1p_ceed_np=${MFEM_MPI_NP}
-      COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
-      ${MPIEXEC_PREFLAGS}
-      $<TARGET_FILE:ex1p> "-no-vis" "-d ceed-cpu" "-pa" "-a"
-      ${MPIEXEC_POSTFLAGS})
-  endif()
 endif()
 
 # Include the examples/amgx directory if AmgX is enabled

examples/amgx/ex1.cpp

@@ -12,7 +12,7 @@
 //               ex1 --amgx-file precon.json --amgx-preconditioner -d cuda
 //
 // Description:  This example code demonstrates the use of MFEM to define a
-//               simple finite element discretization of the Poisson problem
+//               simple finite element discretization of the Laplace problem
 //               -Delta u = 1 with homogeneous Dirichlet boundary conditions.
 //               Specifically, we discretize using a FE space of the specified
 //               order, or if order < 1 using an isoparametric/isogeometric

examples/amgx/ex1p.cpp

@@ -10,7 +10,7 @@
 //               mpirun -np 4 ex1p --amgx-file amg_pcg.json
 //
 // Description:  This example code demonstrates the use of MFEM to define a
-//               simple finite element discretization of the Poisson problem
+//               simple finite element discretization of the Laplace problem
 //               -Delta u = 1 with homogeneous Dirichlet boundary conditions.
 //               Specifically, we discretize using a FE space of the specified
 //               order, or if order < 1 using an isoparametric/isogeometric

examples/ex0.cpp

@@ -7,7 +7,7 @@
 //               ex0 -m ../data/square-disc.mesh -o 2
 //
 // Description: This example code demonstrates the most basic usage of MFEM to
-//              define a simple finite element discretization of the Poisson
+//              define a simple finite element discretization of the Laplace
 //              problem -Delta u = 1 with zero Dirichlet boundary conditions.
 //              General 2D/3D mesh files and finite element polynomial degrees
 //              can be specified by command line options.

examples/ex0p.cpp

@@ -8,7 +8,7 @@
 //
 // Description: This example code demonstrates the most basic parallel usage of
 //              MFEM to define a simple finite element discretization of the
-//              Poisson problem -Delta u = 1 with zero Dirichlet boundary
+//              Laplace problem -Delta u = 1 with zero Dirichlet boundary
 //              conditions. General 2D/3D serial mesh files and finite element
 //              polynomial degrees can be specified by command line options.
 

examples/ex1.cpp

@@ -27,7 +27,6 @@
 //               ex1 -m ../data/fichera-amr.mesh
 //               ex1 -m ../data/mobius-strip.mesh
 //               ex1 -m ../data/mobius-strip.mesh -o -1 -sc
-//               ex1 -m ../data/nc3-nurbs.mesh -o -1
 //
 // Device sample runs:
 //               ex1 -pa -d cuda
@@ -51,7 +50,7 @@
 //               ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
 //
 // Description:  This example code demonstrates the use of MFEM to define a
-//               simple finite element discretization of the Poisson problem
+//               simple finite element discretization of the Laplace problem
 //               -Delta u = 1 with homogeneous Dirichlet boundary conditions.
 //               Specifically, we discretize using a FE space of the specified
 //               order, or if order < 1 using an isoparametric/isogeometric

examples/ex14.cpp

@@ -27,7 +27,7 @@
 //
 // Description:  This example code demonstrates the use of MFEM to define a
 //               discontinuous Galerkin (DG) finite element discretization of
-//               the Poisson problem -Delta u = 1 with homogeneous Dirichlet
+//               the Laplace problem -Delta u = 1 with homogeneous Dirichlet
 //               boundary conditions. Finite element spaces of any order,
 //               including zero on regular grids, are supported. The example
 //               highlights the use of discontinuous spaces and DG-specific face

examples/ex14p.cpp

@@ -26,7 +26,7 @@
 //
 // Description:  This example code demonstrates the use of MFEM to define a
 //               discontinuous Galerkin (DG) finite element discretization of
-//               the Poisson problem -Delta u = 1 with homogeneous Dirichlet
+//               the Laplace problem -Delta u = 1 with homogeneous Dirichlet
 //               boundary conditions. Finite element spaces of any order,
 //               including zero on regular grids, are supported. The example
 //               highlights the use of discontinuous spaces and DG-specific face

examples/ex15.cpp

@@ -159,7 +159,7 @@ int main(int argc, char *argv[])
    FiniteElementSpace fespace(&mesh, &fec);
 
    // 6. As in Example 1p, we set up bilinear and linear forms corresponding to
-   //    the Poisson problem -\Delta u = 1. We don't assemble the discrete
+   //    the Laplace problem -\Delta u = 1. We don't assemble the discrete
    //    problem yet, this will be done in the inner loop.
    BilinearForm a(&fespace);
    LinearForm b(&fespace);
@@ -446,7 +446,7 @@ real_t bdr_func(const Vector &pt, real_t t)
    return composite_func(pt, t, front, ball);
 }
 
-// Laplacian of the exact solution, used for the right hand side.
+// Laplace of the exact solution, used for the right hand side.
 real_t rhs_func(const Vector &pt, real_t t)
 {
    return composite_func(pt, t, front_laplace, ball_laplace);

examples/ex15p.cpp

@@ -181,7 +181,7 @@ int main(int argc, char *argv[])
    ParFiniteElementSpace fespace(&pmesh, &fec);
 
    // 7. As in Example 1p, we set up bilinear and linear forms corresponding to
-   //    the Poisson problem -\Delta u = 1. We don't assemble the discrete
+   //    the Laplace problem -\Delta u = 1. We don't assemble the discrete
    //    problem yet, this will be done in the inner loop.
    ParBilinearForm a(&fespace);
    ParLinearForm b(&fespace);
@@ -507,7 +507,7 @@ real_t bdr_func(const Vector &pt, real_t t)
    return composite_func(pt, t, front, ball);
 }
 
-// Laplacian of the exact solution, used for the right hand side.
+// Laplace of the exact solution, used for the right hand side.
 real_t rhs_func(const Vector &pt, real_t t)
 {
    return composite_func(pt, t, front_laplace, ball_laplace);

examples/ex16.cpp

@@ -105,7 +105,6 @@ int main(int argc, char *argv[])
    bool visualization = true;
    bool visit = false;
    int vis_steps = 5;
-   bool solve_implicit_state = false;
 
    int precision = 8;
    cout.precision(precision);
@@ -127,9 +126,6 @@ int main(int argc, char *argv[])
                   "Alpha coefficient.");
    args.AddOption(&kappa, "-k", "--kappa",
                   "Kappa coefficient offset.");
-   args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
-                  "-imp-slope", "--implicit-slope",
-                  "Implicitly solve for stage state or slope.");
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
@@ -183,11 +179,6 @@ int main(int argc, char *argv[])
 
    // 7. Initialize the conduction operator and the visualization.
    ConductionOperator oper(fespace, alpha, kappa, u);
-   using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
-   ImplicitVariableType imp_var = solve_implicit_state ?
-                                  ImplicitVariableType::STATE
-                                  : ImplicitVariableType::SLOPE;
-   oper.SetImplicitVariableType(imp_var);
 
    u_gf.SetFromTrueDofs(u);
    {
@@ -325,14 +316,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
 }
 
 void ConductionOperator::ImplicitSolve(const real_t dt,
-                                       const Vector &u, Vector &k)
+                                       const Vector &u, Vector &du_dt)
 {
    // Solve the equation:
-   //    M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
-   // or
-   //    M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
-   // where K is linearized by using u from the previous timestep, and
-   // the stage-state and slope relation: du/dt = (u_s - u)/dt.
+   //    du_dt = M^{-1}*[-K(u + dt*du_dt)]
+   // for du_dt, where K is linearized by using u from the previous timestep
    if (!T)
    {
       T = Add(1.0, Mmat, dt, Kmat);
@@ -340,20 +328,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
       T_solver.SetOperator(*T);
    }
    MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
-
-   // Construct current right-hand side for stage state vs. slope solve
-   if (ImplicitVarTypeIsState())
-   {
-      // k, on return, is the stage value u_s
-      Mmat.Mult(u, z);
-   }
-   else
-   {
-      // k, on return, is the stage slope du/dt
-      Kmat.Mult(u, z);
-      z.Neg();
-   }
-   T_solver.Mult(z, k);
+   Kmat.Mult(u, z);
+   z.Neg();
+   T_solver.Mult(z, du_dt);
 }
 
 void ConductionOperator::SetParameters(const Vector &u)

examples/ex16p.cpp

@@ -115,7 +115,6 @@ int main(int argc, char *argv[])
    bool visit = false;
    int vis_steps = 5;
    bool adios2 = false;
-   bool solve_implicit_state = false;
 
    int precision = 8;
    cout.precision(precision);
@@ -139,9 +138,6 @@ int main(int argc, char *argv[])
                   "Alpha coefficient.");
    args.AddOption(&kappa, "-k", "--kappa",
                   "Kappa coefficient offset.");
-   args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
-                  "-imp-slope", "--implicit-slope",
-                  "Implicitly solve for stage state or slope.");
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
@@ -216,11 +212,6 @@ int main(int argc, char *argv[])
 
    // 9. Initialize the conduction operator and the VisIt visualization.
    ConductionOperator oper(fespace, alpha, kappa, u);
-   using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
-   ImplicitVariableType imp_var = solve_implicit_state ?
-                                  ImplicitVariableType::STATE
-                                  : ImplicitVariableType::SLOPE;
-   oper.SetImplicitVariableType(imp_var);
 
    u_gf.SetFromTrueDofs(u);
    {
@@ -416,14 +407,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
 }
 
 void ConductionOperator::ImplicitSolve(const real_t dt,
-                                       const Vector &u, Vector &k)
+                                       const Vector &u, Vector &du_dt)
 {
    // Solve the equation:
-   //    M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
-   // or
-   //    M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
-   // where K is linearized by using u from the previous timestep, and
-   // the stage-state and slope relation: du/dt = (u_s - u)/dt.
+   //    du_dt = M^{-1}*[-K(u + dt*du_dt)]
+   // for du_dt, where K is linearized by using u from the previous timestep
    if (!T)
    {
       T = Add(1.0, Mmat, dt, Kmat);
@@ -431,20 +419,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
       T_solver.SetOperator(*T);
    }
    MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
-
-   // Construct current right-hand side for stage state vs. slope solve
-   if (ImplicitVarTypeIsState())
-   {
-      // k, on return, is the stage value u
-      Mmat.Mult(u, z);
-   }
-   else
-   {
-      // k, on return, is the stage slope du/dt
-      Kmat.Mult(u, z);
-      z.Neg();
-   }
-   T_solver.Mult(z, k);
+   Kmat.Mult(u, z);
+   z.Neg();
+   T_solver.Mult(z, du_dt);
 }
 
 void ConductionOperator::SetParameters(const Vector &u)

examples/ex1p.cpp

@@ -45,7 +45,7 @@
 //               mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
 //
 // Description:  This example code demonstrates the use of MFEM to define a
-//               simple finite element discretization of the Poisson problem
+//               simple finite element discretization of the Laplace problem
 //               -Delta u = 1 with homogeneous Dirichlet boundary conditions.
 //               Specifically, we discretize using a FE space of the specified
 //               order, or if order < 1 using an isoparametric/isogeometric

examples/ex21.cpp

@@ -119,7 +119,7 @@ int main(int argc, char *argv[])
    }
 
    LinearForm b(&fespace);
-   b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
+   b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
 
    // 6. Set up the bilinear form a(.,.) on the finite element space
    //    corresponding to the linear elasticity integrator with piece-wise

examples/ex21p.cpp

@@ -140,7 +140,7 @@ int main(int argc, char *argv[])
    }
 
    ParLinearForm b(&fespace);
-   b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
+   b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
 
    // 6. Set up the bilinear form a(.,.) on the finite element space
    //    corresponding to the linear elasticity integrator with piece-wise

examples/ex22.cpp

@@ -471,13 +471,10 @@ int main(int argc, char *argv[])
 
       ofstream sol_r_ofs("sol_r.gf");
       ofstream sol_i_ofs("sol_i.gf");
-      ofstream sol_z_ofs("sol_z.gf");
       sol_r_ofs.precision(8);
       sol_i_ofs.precision(8);
-      sol_z_ofs.precision(8);
       u.real().Save(sol_r_ofs);
       u.imag().Save(sol_i_ofs);
-      u.Save(sol_z_ofs);
    }
 
    // 14. Send the solution by socket to a GLVis server.