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Author SHA1 Message Date
blaz 390a9d1d36 anderson accelation 2026-01-12 09:18:05 -08:00
blaz 97ef765a8c initial filter 2026-01-08 23:05:02 -08:00
blaz 64d85b1413 draft 2026-01-06 08:22:41 -08:00
bslazarov 349ae2dd25 forward filter 2025-12-23 15:44:38 -08:00
blaz 727cdd8034 more code 2025-12-23 09:43:21 -08:00
blaz 100ceb28c0 Merge branch 'master' into mtop_filter 2025-12-22 22:11:27 -08:00
blaz d6daac45b9 modifications 2025-12-22 22:09:32 -08:00
blaz c3b2f36cbd mtop-solvers filter 2025-12-11 11:20:43 -08:00
blaz 4b576c12c5 update on the pde filter 2025-12-10 09:15:19 -08:00
blaz 78770a9673 fist version of the filters 2025-12-09 10:03:13 -08:00
163 changed files with 5110 additions and 13286 deletions
-10
View File
@@ -313,8 +313,6 @@ miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex3
miniapps/nurbs/nurbs_ex5
miniapps/nurbs/nurbs_ex10
miniapps/nurbs/nurbs_ex10p
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_ex24
miniapps/nurbs/nurbs_solenoidal
@@ -340,14 +338,7 @@ miniapps/nurbs/nurbs_naca_cmesh
miniapps/nurbs/naca-cmesh.mesh
miniapps/nurbs/glvis_naca-cmesh.mesh
miniapps/nurbs/Naca_cmesh
miniapps/nurbs/nurbs_mesh_info
miniapps/nurbs/k*_*.dat
miniapps/nurbs/*-Surface.mesh
miniapps/nurbs/*.mesh
miniapps/nurbs/*.sol
miniapps/nurbs/deformed.*
miniapps/nurbs/elastic_energy.*
miniapps/nurbs/velocity.*
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -369,7 +360,6 @@ miniapps/shifted/lsf_integral
miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/compare-dc
miniapps/tools/gridfunction-bounds
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
-33
View File
@@ -11,22 +11,6 @@
Version 4.9.1 (development)
===========================
Discretization improvements
---------------------------
- Improved the gridfunction projection routines. Projections work for Scalar,
Vector and VectorFE, also NURBS versions. Optionally different types of
projections can be selected, default behaviour has not changed.
Meshing improvements
--------------------
- Improved support for 1D NURBS meshes with variable order, including using
the patches construct for 1D NURBS meshes.
New and updated examples and miniapps
-------------------------------------
- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
capability.
Version 4.9, released on Dec 11, 2025
=====================================
@@ -111,23 +95,6 @@ Linear and nonlinear solvers
Filtering (AMGF), providing robust preconditioning for linear systems arising
in constrained optimization problems such as frictionless contact.
Added 'GetResiduals' and 'GetFinalAbsResidualNorm' to 'HyprePCG',
'HypreGMRES', and 'HypreFGMRES' to get 'r' and '|r|_p'. Note that the latter
computes '|r|_p' from 'r' instead of returning a cached value like the
relative 'GetFinalResidualNorm'. These require Hypre >= 2.15.0.
Changed the default solver parameters for 'HyprePCG' to 'tol=1e-6' and
'max_iter=1000'. This matches the default parameters in Hypre 3.0.
Added various helper functions for querying/modifying Hypre solvers:
'HypreSmoother::GetType', 'HypreSmoother::GetSOROptions',
'HypreSmoother::GetPolyOptions', 'HypreSmoother::GetWindowParameters',
'HypreSmoother::IsOperatorSymmetric', 'HyprePCG::GetTol',
'HyprePCG::GetAbsTol', 'HyprePCG::GetMaxIter', 'HyprePCG::SetUseTwoNorm',
'HypreGMRES::GetTol', 'HypreGMRES::GetAbsTol', 'HypreGMRES::GetMaxIter',
'HypreGMRES::GetKDim', 'HypreFGMRES::GetTol', 'HypreFGMRES::GetMaxIter',
'HypreFGMRES::GetKDim', and 'HypreBoomerAMG::GetMaxIter'.
GPU computing
-------------
- Added the 'gpu', 'raja-gpu', and 'ceed-gpu' backend aliases/shortcuts which
+5 -11
View File
@@ -723,7 +723,6 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX})
# Declaring the library
mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
target_compile_features(mfem PUBLIC cxx_std_${CMAKE_CXX_STANDARD})
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES} ${TPL_TARGETS})
if (TPL_TARGETS)
@@ -870,12 +869,11 @@ add_dependencies(exec
# - https://cmake.org/Bug/view.php?id=8438
# Add a target to copy the mfem data directory to the build directory
# Implementable as a single copy_directory_if_different command w/ CMake >= 3.26
file(GLOB DATA_FILES CONFIGURE_DEPENDS ${PROJECT_SOURCE_DIR}/data/*)
add_custom_target(copy_data
COMMAND ${CMAKE_COMMAND} -E make_directory data
COMMAND ${CMAKE_COMMAND} -E copy_if_different ${DATA_FILES} data
COMMENT "Syncing the data directory ...")
add_custom_command(OUTPUT data_is_copied
COMMAND ${CMAKE_COMMAND} -E copy_directory ${PROJECT_SOURCE_DIR}/data data
COMMAND ${CMAKE_COMMAND} -E touch data_is_copied
COMMENT "Copying the data directory ...")
add_custom_target(copy_data DEPENDS data_is_copied)
# Add 'copy_data' as a prerequisite for all executables, if the source and the
# build directories are not the same.
if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
@@ -1007,10 +1005,6 @@ install(FILES
install(EXPORT ${PROJECT_NAME_UC}Targets
DESTINATION ${INSTALL_CMAKE_DIR})
# Install the data directory if present, i.e. if the copy_data target is built
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
DESTINATION ${MFEM_INSTALL_DIR} OPTIONAL)
#-------------------------------------------------------------------------------
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
# define install rules for 'config.mk' and 'test.mk'
+1 -3
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@@ -725,9 +725,7 @@ The specific libraries and their options are:
URL: https://ginkgo-project.github.io
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
Debug).
Versions: Ginkgo >= 1.9.0. When building Ginkgo with distributed support, a
recent version of the "develop" branch is required (1.11 as defined
in include/ginkgo/config.hpp).
Versions: Ginkgo >= 1.9.0.
- AmgX (optional), used when MFEM_USE_AMGX = YES.
URL: https://github.com/NVIDIA/AMGX
+1 -2
View File
@@ -18,7 +18,6 @@
# Some choices below are based on the OS type:
NOTMAC := $(subst Darwin,,$(shell uname -s))
ASTYLE_BIN = astyle
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
@@ -408,7 +407,7 @@ AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
# MAGMA library configuration
MAGMA_DIR = @MFEM_DIR@/../magma
MAGMA_OPT = -I$(MAGMA_DIR)/include
MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a $(LAPACK_LIB)
MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a -lcublas -lcusparse $(LAPACK_LIB)
# GnuTLS library configuration
GNUTLS_OPT =
@@ -1,86 +0,0 @@
MFEM NURBS mesh v1.0
dimension
1
# Four segments with different NURBS orders, described via patches.
elements
4
1 1 0 1
2 1 2 3
3 1 4 5
4 1 6 7
boundary
0
edges
4
0 0 1
1 2 3
2 4 5
3 6 7
vertices
8
patches
# Patch 0: linear (order 1, 3 spans)
knotvectors
1
1 4 0 0 .4 .6 1 1
dimension
2
controlpoints
0.0 0.0 1.0
0.6 0.4 1.0
0.4 0.6 1.0
1.0 1.0 1.0
# Patch 1: quadratic (order 2, 2 spans)
knotvectors
1
2 4 0 0 0 .5 1 1 1
dimension
2
controlpoints
1.0 0.0 1.0
1.9 0.0 1.21
2.0 0.9 1.22
2.0 1.0 1.0
# Patch 2: cubic (order 3, 3 spans)
knotvectors
1
3 6 0 0 0 0 .33 .66 1 1 1 1
dimension
2
controlpoints
2.0 0.0 1.0
2.1 0.2 1.31
3.5 0.4 1.32
2.5 0.6 1.33
2.9 1.0 1.34
3.0 1.0 1.0
# Patch 3: quartic (order 4, 1 span)
knotvectors
1
4 5 0 0 0 0 0 1 1 1 1 1
dimension
2
controlpoints
3.0 0.0 1.0
3.45 0.5 1.41
3.50 1.0 1.42
3.75 0.8 1.43
4.0 0.0 1.0
-79
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@@ -1,79 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
# Three segments with different NURBS orders, described via patches.
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
patches
# Patch 0: linear (order 1, 2 control points)
knotvectors
1
1 2 0 0 1 1
dimension
2
controlpoints
0.0 0.0 1.0
1.0 1.0 1.0
# Patch 1: quadratic (order 2, 3 control points)
knotvectors
1
2 3 0 0 0 1 1 1
dimension
2
controlpoints
1.0 0.0 1.0
1.02 1.02 1.2
2.0 1.0 1.0
# Patch 2: cubic (order 3, 4 control points)
knotvectors
1
3 4 0 0 0 0 1 1 1 1
dimension
2
controlpoints
2.0 0.0 1.0
2.03 0.83 1.31
2.33 1.03 1.32
3.0 1.0 1.0
-72
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@@ -1,72 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
# Edge 0: linear (order 1, 2 control points)
# Edge 1: quadratic (order 2, 3 control points)
# Edge 2: cubic (order 3, 4 control points)
knotvectors
3
1 2 0 0 1 1
2 3 0 0 0 1 1 1
3 4 0 0 0 0 1 1 1 1
# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
weights
1
1
1
1
1
1
1.2
1.31
1.32
FiniteElementSpace
FiniteElementCollection: NURBS
VDim: 2
Ordering: 1
0.0 0.0
1.0 1.0
1.0 0.0
2.0 1.0
2.0 0.0
3.0 1.0
1.02 1.02
2.03 0.83
2.33 1.03
-79
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@@ -1,79 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
# Three segments with different NURBS orders, described via patches.
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
patches
# Patch 0: linear (order 1, 2 control points)
knotvectors
1
1 2 0 0 1 1
dimension
3
controlpoints
0.0 0.0 0.01 1.0
1.0 1.0 1.01 1.0
# Patch 1: quadratic (order 2, 3 control points)
knotvectors
1
2 3 0 0 0 1 1 1
dimension
3
controlpoints
1.0 0.0 0.02 1.0
1.02 1.02 0.52 1.2
2.0 1.0 1.02 1.0
# Patch 2: cubic (order 3, 4 control points)
knotvectors
1
3 4 0 0 0 0 1 1 1 1
dimension
3
controlpoints
2.0 0.0 0.03 1.0
2.03 0.83 0.33 1.31
2.33 1.03 0.63 1.32
3.0 1.0 1.03 1.0
-72
View File
@@ -1,72 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
# Edge 0: linear (order 1, 2 control points)
# Edge 1: quadratic (order 2, 3 control points)
# Edge 2: cubic (order 3, 4 control points)
knotvectors
3
1 2 0 0 1 1
2 3 0 0 0 1 1 1
3 4 0 0 0 0 1 1 1 1
# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
weights
1
1
1
1
1
1
1.2
1.31
1.32
FiniteElementSpace
FiniteElementCollection: NURBS
VDim: 3
Ordering: 1
0.0 0.0 0.01
1.0 1.0 1.01
1.0 0.0 0.02
2.0 1.0 1.02
2.0 0.0 0.03
3.0 1.0 1.03
1.02 1.02 0.52
2.03 0.83 0.33
2.33 1.03 0.63
-3
View File
@@ -190,8 +190,6 @@ namespace mfem {
* <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
* <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
* <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
* <a class="el" href="nurbs__ex10_8cpp_source.html">10</a>,
* <a class="el" href="nurbs__ex10p_8cpp_source.html">10p</a>,
* <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
* <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
* demonstrating howto perform NURBS-based Isogeometric Analysis.
@@ -200,7 +198,6 @@ namespace mfem {
* - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
* - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
*
* <H3>Miniapps</H3>
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
+6 -29
View File
@@ -105,7 +105,6 @@ int main(int argc, char *argv[])
bool visualization = true;
bool visit = false;
int vis_steps = 5;
bool solve_implicit_state = false;
int precision = 8;
cout.precision(precision);
@@ -127,9 +126,6 @@ int main(int argc, char *argv[])
"Alpha coefficient.");
args.AddOption(&kappa, "-k", "--kappa",
"Kappa coefficient offset.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -183,11 +179,6 @@ int main(int argc, char *argv[])
// 7. Initialize the conduction operator and the visualization.
ConductionOperator oper(fespace, alpha, kappa, u);
using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
oper.SetImplicitVariableType(imp_var);
u_gf.SetFromTrueDofs(u);
{
@@ -325,14 +316,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
}
void ConductionOperator::ImplicitSolve(const real_t dt,
const Vector &u, Vector &k)
const Vector &u, Vector &du_dt)
{
// Solve the equation:
// M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
// or
// M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
// where K is linearized by using u from the previous timestep, and
// the stage-state and slope relation: du/dt = (u_s - u)/dt.
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt, where K is linearized by using u from the previous timestep
if (!T)
{
T = Add(1.0, Mmat, dt, Kmat);
@@ -340,20 +328,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
T_solver.SetOperator(*T);
}
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u_s
Mmat.Mult(u, z);
}
else
{
// k, on return, is the stage slope du/dt
Kmat.Mult(u, z);
z.Neg();
}
T_solver.Mult(z, k);
Kmat.Mult(u, z);
z.Neg();
T_solver.Mult(z, du_dt);
}
void ConductionOperator::SetParameters(const Vector &u)
+6 -29
View File
@@ -115,7 +115,6 @@ int main(int argc, char *argv[])
bool visit = false;
int vis_steps = 5;
bool adios2 = false;
bool solve_implicit_state = false;
int precision = 8;
cout.precision(precision);
@@ -139,9 +138,6 @@ int main(int argc, char *argv[])
"Alpha coefficient.");
args.AddOption(&kappa, "-k", "--kappa",
"Kappa coefficient offset.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -216,11 +212,6 @@ int main(int argc, char *argv[])
// 9. Initialize the conduction operator and the VisIt visualization.
ConductionOperator oper(fespace, alpha, kappa, u);
using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
oper.SetImplicitVariableType(imp_var);
u_gf.SetFromTrueDofs(u);
{
@@ -416,14 +407,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
}
void ConductionOperator::ImplicitSolve(const real_t dt,
const Vector &u, Vector &k)
const Vector &u, Vector &du_dt)
{
// Solve the equation:
// M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
// or
// M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
// where K is linearized by using u from the previous timestep, and
// the stage-state and slope relation: du/dt = (u_s - u)/dt.
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt, where K is linearized by using u from the previous timestep
if (!T)
{
T = Add(1.0, Mmat, dt, Kmat);
@@ -431,20 +419,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
T_solver.SetOperator(*T);
}
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u
Mmat.Mult(u, z);
}
else
{
// k, on return, is the stage slope du/dt
Kmat.Mult(u, z);
z.Neg();
}
T_solver.Mult(z, k);
Kmat.Mult(u, z);
z.Neg();
T_solver.Mult(z, du_dt);
}
void ConductionOperator::SetParameters(const Vector &u)
+1 -1
View File
@@ -119,7 +119,7 @@ int main(int argc, char *argv[])
}
LinearForm b(&fespace);
b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
// 6. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
+1 -1
View File
@@ -140,7 +140,7 @@ int main(int argc, char *argv[])
}
ParLinearForm b(&fespace);
b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
// 6. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
+1 -5
View File
@@ -9,7 +9,6 @@
// ex4 -m ../data/beam-hex.mesh -o 2 -pa
// ex4 -m ../data/escher.mesh
// ex4 -m ../data/fichera.mesh -o 2 -hb
// ex4 -m ../data/fichera.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-q2.vtk
// ex4 -m ../data/fichera-q3.mesh -o 2 -sc
// ex4 -m ../data/square-disc-nurbs.mesh
@@ -19,7 +18,6 @@
// ex4 -m ../data/amr-quad.mesh
// ex4 -m ../data/amr-hex.mesh
// ex4 -m ../data/amr-hex.mesh -o 2 -hb
// ex4 -m ../data/amr-hex.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-amr.mesh -o 2 -sc
// ex4 -m ../data/ref-prism.mesh -o 1
// ex4 -m ../data/octahedron.mesh -o 1
@@ -27,8 +25,6 @@
//
// Device sample runs:
// ex4 -m ../data/star.mesh -pa -d cuda
// ex4 -m ../data/star.mesh -hb -ea -d cuda
// ex4 -m ../data/amr-quad.mesh -hb -ea -d cuda
// ex4 -m ../data/star.mesh -pa -d raja-cuda
// ex4 -m ../data/star.mesh -pa -d raja-omp
// ex4 -m ../data/beam-hex.mesh -pa -d cuda
@@ -197,7 +193,7 @@ int main(int argc, char *argv[])
cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (!pa && (!ea || hybridization))
if (!pa)
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
+1 -6
View File
@@ -9,7 +9,6 @@
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -o 2 -pa
// mpirun -np 4 ex4p -m ../data/escher.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex4p -m ../data/fichera-q3.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/square-disc-nurbs.mesh -o 3
@@ -18,18 +17,14 @@
// mpirun -np 4 ex4p -m ../data/periodic-cube.mesh -no-bc
// mpirun -np 4 ex4p -m ../data/amr-quad.mesh
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/ref-prism.mesh -o 1
// mpirun -np 4 ex4p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
//
// Device sample runs:
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-omp
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -pa -d cuda
@@ -235,7 +230,7 @@ int main(int argc, char *argv[])
pcg->SetMaxIter(2000);
pcg->SetPrintLevel(1);
if (hybridization) { prec = new HypreBoomerAMG(*A.As<HypreParMatrix>()); }
else if (pa || ea) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else if (pa) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else
{
ParFiniteElementSpace *prec_fespace =
+1 -20
View File
@@ -160,7 +160,6 @@ int main(int argc, char *argv[])
bool paraview = false;
bool binary = false;
int vis_steps = 5;
bool solve_implicit_state = false;
int precision = 8;
cout.precision(precision);
@@ -188,9 +187,6 @@ int main(int argc, char *argv[])
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
"Time step.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -370,11 +366,6 @@ int main(int argc, char *argv[])
// right-hand side, and perform time-integration (looping over the time
// iterations, ti, with a time-step dt).
FE_Evolution adv(m, k, b);
using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
adv.SetImplicitVariableType(imp_var);
real_t t = 0.0;
adv.SetTime(t);
@@ -468,17 +459,7 @@ void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
{
MFEM_VERIFY(dg_solver != NULL,
"Implicit time integration is not supported with partial assembly");
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u
M.Mult(x, z);
}
else
{
// k, on return, is the stage slope du/dt
K.Mult(x, z);
}
K.Mult(x, z);
z += b;
dg_solver->SetTimeStep(dt);
dg_solver->Mult(z, k);
+1 -20
View File
@@ -257,7 +257,6 @@ int main(int argc, char *argv[])
bool adios2 = false;
bool binary = false;
int vis_steps = 5;
bool solve_implicit_state = false;
#if MFEM_HYPRE_VERSION >= 21800
PrecType prec_type = PrecType::AIR;
#else
@@ -291,9 +290,6 @@ int main(int argc, char *argv[])
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
"Time step.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption((int *)&prec_type, "-pt", "--prec-type", "Preconditioner for "
"implicit solves. 0 for ILU, 1 for pAIR-AMG.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
@@ -540,11 +536,6 @@ int main(int argc, char *argv[])
// right-hand side, and perform time-integration (looping over the time
// iterations, ti, with a time-step dt).
FE_Evolution adv(*m, *k, *B, prec_type);
using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
adv.SetImplicitVariableType(imp_var);
real_t t = 0.0;
adv.SetTime(t);
@@ -685,17 +676,7 @@ FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
// (M - dt*K) d = K*u + b
void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
{
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u
M->Mult(x, z);
}
else
{
// k, on return, is the stage slope du/dt
K->Mult(x, z);
}
K->Mult(x, z);
z += b;
dg_solver->SetTimeStep(dt);
dg_solver->Mult(z, k);
-6
View File
@@ -14,12 +14,6 @@ list(APPEND GINKGO_EXAMPLES_SRCS
ex1.cpp
)
if (MFEM_USE_MPI AND GINKGO_BUILD_MPI)
list(APPEND GINKGO_EXAMPLES_SRCS
ex1p.cpp
)
endif()
# Include the source directory where mfem.hpp and mfem-performance.hpp are.
include_directories(BEFORE ${PROJECT_BINARY_DIR})
+3 -3
View File
@@ -207,7 +207,7 @@ int main(int argc, char *argv[])
Ginkgo::IcPreconditioner ginkgo_precond(exec, "paric", 30);
Ginkgo::CGSolver ginkgo_solver(exec, ginkgo_precond);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
@@ -225,7 +225,7 @@ int main(int argc, char *argv[])
Ginkgo::MFEMPreconditioner gko_M(exec, M);
Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
@@ -283,7 +283,7 @@ int main(int argc, char *argv[])
Ginkgo::MFEMPreconditioner gko_M(exec, M);
Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
-436
View File
@@ -1,436 +0,0 @@
// MFEM Example 1 - Parallel Version
// GINKGO Modification
//
// Compile with: make ex1p
//
// Sample runs: mpirun -np 4 ex1p -m ../data/square-disc.mesh
// mpirun -np 4 ex1p -m ../data/star.mesh
// mpirun -np 4 ex1p -m ../data/star-mixed.mesh
// mpirun -np 4 ex1p -m ../data/escher.mesh
// mpirun -np 4 ex1p -m ../data/fichera.mesh
// mpirun -np 4 ex1p -m ../data/fichera-mixed.mesh
// mpirun -np 4 ex1p -m ../data/toroid-wedge.mesh
// mpirun -np 4 ex1p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex1p -m ../data/periodic-annulus-sector.msh
// mpirun -np 4 ex1p -m ../data/periodic-torus-sector.msh
// mpirun -np 4 ex1p -m ../data/square-disc-p2.vtk -o 2
// mpirun -np 4 ex1p -m ../data/square-disc-p3.mesh -o 3
// mpirun -np 4 ex1p -m ../data/square-disc-nurbs.mesh -o -1
// mpirun -np 4 ex1p -m ../data/star-mixed-p2.mesh -o 2
// mpirun -np 4 ex1p -m ../data/disc-nurbs.mesh -o -1
// mpirun -np 4 ex1p -m ../data/pipe-nurbs.mesh -o -1
// mpirun -np 4 ex1p -m ../data/ball-nurbs.mesh -o 2
// mpirun -np 4 ex1p -m ../data/fichera-mixed-p2.mesh -o 2
// mpirun -np 4 ex1p -m ../data/star-surf.mesh
// mpirun -np 4 ex1p -m ../data/square-disc-surf.mesh
// mpirun -np 4 ex1p -m ../data/inline-segment.mesh
// mpirun -np 4 ex1p -m ../data/amr-quad.mesh
// mpirun -np 4 ex1p -m ../data/amr-hex.mesh
// mpirun -np 4 ex1p -m ../data/mobius-strip.mesh
// mpirun -np 4 ex1p -m ../data/mobius-strip.mesh -o -1 -sc
//
// Device sample runs:
// mpirun -np 4 ex1p -pa -d cuda
// mpirun -np 4 ex1p -fa -d cuda
// mpirun -np 4 ex1p -pa -d occa-cuda
// mpirun -np 4 ex1p -pa -d raja-omp
// mpirun -np 4 ex1p -pa -d ceed-cpu
// mpirun -np 4 ex1p -pa -d ceed-cpu -o 4 -a
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/square-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/fichera-mixed.mesh
// * mpirun -np 4 ex1p -pa -d ceed-cuda
// * mpirun -np 4 ex1p -pa -d ceed-hip
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Laplace problem
// -Delta u = 1 with homogeneous Dirichlet boundary conditions.
// Specifically, we discretize using a FE space of the specified
// order, or if order < 1 using an isoparametric/isogeometric
// space (i.e. quadratic for quadratic curvilinear mesh, NURBS for
// NURBS mesh, etc.)
//
// The example highlights the use of mesh refinement, finite
// element grid functions, as well as linear and bilinear forms
// corresponding to the left-hand side and right-hand side of the
// discrete linear system. We also cover the explicit elimination
// of essential boundary conditions, static condensation, and the
// optional connection to the GLVis tool for visualization.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#ifndef MFEM_USE_GINKGO
#error This example requires that MFEM is built with MFEM_USE_GINKGO=YES
#endif
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
Mpi::Init();
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
// 2. Parse command-line options.
const char *mesh_file = "../../data/star.mesh";
int order = 1;
bool static_cond = false;
bool pa = false;
bool fa = false;
const char *device_config = "cpu";
bool visualization = true;
int solver_config = 0;
int print_lvl = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
"--no-full-assembly", "Enable Full Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&solver_config, "-s", "--solver-config",
"Solver and preconditioner combination: \n\t"
" 0 - Ginkgo solver and Ginkgo preconditioner, \n\t"
" 1 - Ginkgo solver and MFEM preconditioner, \n\t"
" 2 - MFEM solver and Ginkgo preconditioner, \n\t"
" 3 - MFEM solver and MFEM preconditioner.");
args.AddOption(&print_lvl, "-pl", "--print-level",
"Print level for iterative solver (1 prints every iteration).");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.SetGPUAwareMPI(true);
if (myid == 0) { device.Print(); }
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
// 5. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement. We choose
// 'ref_levels' to be the largest number that gives a final mesh with no
// more than 10,000 elements.
{
int ref_levels =
(int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
}
}
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
{
int par_ref_levels = 2;
for (int l = 0; l < par_ref_levels; l++)
{
pmesh.UniformRefinement();
}
}
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (pmesh.GetNodes())
{
fec = pmesh.GetNodes()->OwnFEC();
delete_fec = false;
if (myid == 0)
{
cout << "Using isoparametric FEs: " << fec->Name() << endl;
}
}
else
{
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
ParFiniteElementSpace fespace(&pmesh, fec);
HYPRE_BigInt size = fespace.GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
}
// 8. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
if (pmesh.bdr_attributes.Size())
{
Array<int> ess_bdr(pmesh.bdr_attributes.Max());
ess_bdr = 1;
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 9. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system, which in this case is
// (1,phi_i) where phi_i are the basis functions in fespace.
ParLinearForm b(&fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
b.Assemble();
// 10. Define the solution vector x as a parallel finite element grid
// function corresponding to fespace. Initialize x with initial guess of
// zero, which satisfies the boundary conditions.
ParGridFunction x(&fespace);
x = 0.0;
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the
// Diffusion domain integrator.
ParBilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
if (fa)
{
a.SetAssemblyLevel(AssemblyLevel::FULL);
// Sort the matrix column indices when running on GPU or with OpenMP (i.e.
// when Device::IsEnabled() returns true). This makes the results
// bit-for-bit deterministic at the cost of somewhat longer run time.
a.EnableSparseMatrixSorting(Device::IsEnabled());
}
a.AddDomainIntegrator(new DiffusionIntegrator(one));
// 12. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation, etc.
if (static_cond) { a.EnableStaticCondensation(); }
a.Assemble();
OperatorPtr A;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
// 13. Solve the linear system A X = B.
if (!pa)
{
switch (solver_config)
{
// Solve the linear system with CG + Schwarz (with IC) from Ginkgo
case 0:
{
if (myid == 0) { cout << "Using Ginkgo solver + preconditioner...\n"; }
Ginkgo::GinkgoExecutor exec(device);
Ginkgo::IcPreconditioner local_solver(exec, "exact");
Ginkgo::SchwarzPreconditioner gko_M(exec, MPI_COMM_WORLD, local_solver);
Ginkgo::CGSolver ginkgo_solver(exec, MPI_COMM_WORLD, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
ginkgo_solver.Mult(B, X);
break;
}
// Solve the linear system with CG from Ginkgo + MFEM preconditioner
case 1:
{
if (myid == 0) { cout << "Using Ginkgo solver + MFEM preconditioner...\n"; }
Ginkgo::GinkgoExecutor exec(device);
//Create MFEM preconditioner and wrap it for Ginkgo's use.
HypreBoomerAMG M((HypreParMatrix&)(*A));
Ginkgo::MFEMPreconditioner gko_M(exec, M, MPI_COMM_WORLD);
Ginkgo::CGSolver ginkgo_solver(exec, MPI_COMM_WORLD, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
ginkgo_solver.Mult(B, X);
break;
}
// Ginkgo Schwarz preconditioner (local ParIC) + MFEM CG solver
case 2:
{
if (myid == 0) { cout << "Using MFEM solver + Ginkgo preconditioner...\n"; }
Ginkgo::GinkgoExecutor exec(device);
Ginkgo::IcPreconditioner local_M(exec, "exact");
Ginkgo::SchwarzPreconditioner M(exec, MPI_COMM_WORLD, local_M);
M.SetOperator(*(A.Ptr())); // Generate the preconditioner for the matrix A.
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(sqrt(1e-12));
cg.SetMaxIter(400);
cg.SetPrintLevel(1);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(B, X);
break;
}
// MFEM solver + MFEM preconditioner
case 3:
{
if (myid == 0) { cout << "Using MFEM solver + MFEM preconditioner...\n"; }
HypreBoomerAMG M((HypreParMatrix&)(*A));
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(sqrt(1e-12));
cg.SetMaxIter(400);
cg.SetPrintLevel(1);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(B, X);
break;
}
} // End switch on solver_config
}
// Partial assembly mode. Cannot use Ginkgo preconditioners, but can use Ginkgo
// solvers.
else
{
if (UsesTensorBasis(fespace))
{
// Use Jacobi preconditioning in partial assembly mode.
OperatorJacobiSmoother M(a, ess_tdof_list);
switch (solver_config)
{
case 0:
{
if (myid == 0) { cout << "Using Ginkgo solver + preconditioner...\n"; }
MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
" Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
break;
}
// Use Ginkgo solver with MFEM preconditioner
case 1:
{
if (myid == 0) { cout << "Using Ginkgo solver + MFEM preconditioner...\n"; }
Ginkgo::GinkgoExecutor exec(device);
// Wrap MFEM preconditioner for Ginkgo's use.
Ginkgo::MFEMPreconditioner gko_M(exec, M, MPI_COMM_WORLD);
Ginkgo::CGSolver ginkgo_solver(exec, MPI_COMM_WORLD, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
ginkgo_solver.Mult(B, X);
break;
}
// No Ginkgo preconditioners work with matrix-free; error
case 2:
{
if (myid == 0) { cout << "Using Ginkgo solver + preconditioner...\n"; }
MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
" Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
break;
}
// Use MFEM solver and preconditioner
case 3:
{
if (myid == 0) { cout << "Using MFEM solver + MFEM preconditioner...\n"; }
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(sqrt(1e-12));
cg.SetMaxIter(400);
cg.SetPrintLevel(1);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(B, X);
break;
}
} // End switch on solver_config
}
else // CG with no preconditioning
{
if (myid == 0) { cout << "Using MFEM solver + no preconditioner...\n"; }
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(sqrt(1e-12));
cg.SetMaxIter(400);
cg.SetPrintLevel(1);
cg.SetOperator(*A);
cg.Mult(B, X);
}
}
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a.RecoverFEMSolution(X, b, x);
// 15. Save the refined mesh and the solution in parallel. This output can
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
{
ostringstream mesh_name, sol_name;
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
sol_name << "sol." << setfill('0') << setw(6) << myid;
ofstream mesh_ofs(mesh_name.str().c_str());
mesh_ofs.precision(8);
pmesh.Print(mesh_ofs);
ofstream sol_ofs(sol_name.str().c_str());
sol_ofs.precision(8);
x.Save(sol_ofs);
}
// 16. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock << "parallel " << num_procs << " " << myid << "\n";
sol_sock.precision(8);
sol_sock << "solution\n" << pmesh << x << flush;
}
// 17. Free the used memory.
if (delete_fec)
{
delete fec;
}
return 0;
}
+2 -1
View File
@@ -20,8 +20,9 @@ CONFIG_MK = $(or $(wildcard $(MFEM_BUILD_DIR)/config/config.mk),\
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
# Currently there are only serial Ginkgo examples
SEQ_EXAMPLES = ex1
PAR_EXAMPLES = ex1p
PAR_EXAMPLES =
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
+6 -35
View File
@@ -825,46 +825,14 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
Vector &b, OperatorHandle &A, Vector &X,
Vector &B, int copy_interior)
{
const SparseMatrix *P = fes->GetConformingProlongation();
const SparseMatrix *R = fes->GetConformingRestriction();
if (ext)
{
if (hybridization)
{
FormSystemMatrix(ess_tdof_list, A);
std::unique_ptr<ConstrainedOperator> A_constrained([&]()
{
Operator *op;
Operator::FormSystemOperator(ess_tdof_list, op);
return dynamic_cast<ConstrainedOperator*>(op);
}());
MFEM_ASSERT(A_constrained != nullptr, "");
Vector conf_b, conf_x;
if (P)
{
// Nonconforming
conf_b.SetSize(P->Width());
conf_x.SetSize(P->Width());
P->MultTranspose(b, conf_b);
R->Mult(x, conf_x);
}
else
{
// Conforming
conf_b.MakeRef(b, 0, b.Size());
conf_x.MakeRef(x, 0, x.Size());
}
A_constrained->EliminateRHS(conf_x, conf_b);
if (P)
{
R->MultTranspose(conf_b, b); // store eliminated rhs in b
}
hybridization->ReduceRHS(conf_b, B);
ConstrainedOperator A_constrained(this, ess_tdof_list);
A_constrained.EliminateRHS(x, b);
hybridization->ReduceRHS(b, B);
X.SetSize(B.Size());
X = 0.0;
}
@@ -874,6 +842,7 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
}
return;
}
const SparseMatrix *P = fes->GetConformingProlongation();
FormSystemMatrix(ess_tdof_list, A);
// Transform the system and perform the elimination in B, based on the
@@ -909,6 +878,7 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
if (hybridization)
{
// Reduction to the Lagrange multipliers system
const SparseMatrix *R = fes->GetConformingRestriction();
Vector conf_b(P->Width()), conf_x(P->Width());
P->MultTranspose(b, conf_b);
R->Mult(x, conf_x);
@@ -921,6 +891,7 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
else
{
// Variational restriction with P
const SparseMatrix *R = fes->GetConformingRestriction();
B.SetSize(P->Width());
P->MultTranspose(b, B);
X.SetSize(R->Height());
-67
View File
@@ -1302,73 +1302,6 @@ real_t TraceCoefficient::Eval(ElementTransformation &T,
return ma.Trace();
}
VectorComponentCoefficient::VectorComponentCoefficient(VectorCoefficient &A,
int c)
: a(&A), va(A.GetVDim())
{
SetComponent(c);
}
void VectorComponentCoefficient::SetComponent(int c)
{
MFEM_ASSERT(c < a->GetVDim() && c >= 0,
"VectorComponentCoefficient: "
"Index not in range.");
component = c;
}
void VectorComponentCoefficient::SetTime(real_t t)
{
if (a) { a->SetTime(t); }
this->Coefficient::SetTime(t);
}
real_t VectorComponentCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
a->Eval(va, T, ip);
return va[component];
}
MatrixComponentCoefficient::MatrixComponentCoefficient(MatrixCoefficient &A,
int ri, int ci)
: a(&A), ma(A.GetHeight(), A.GetWidth())
{
SetRowIndex(ri);
SetColumnIndex(ci);
}
void MatrixComponentCoefficient::SetRowIndex(int ri)
{
MFEM_ASSERT(ri < a->GetHeight() && ri >= 0,
"MatrixComponentCoefficient: "
"Row index not in range.");
row_idx = ri;
}
void MatrixComponentCoefficient::SetColumnIndex(int ci)
{
MFEM_ASSERT(ci < a->GetWidth() && ci >= 0,
"MatrixComponentCoefficient: "
"Column index not in range.");
col_idx = ci;
}
void MatrixComponentCoefficient::SetTime(real_t t)
{
if (a) { a->SetTime(t); }
this->Coefficient::SetTime(t);
}
real_t MatrixComponentCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
a->Eval(ma, T, ip);
return ma(row_idx,col_idx);
}
VectorSumCoefficient::VectorSumCoefficient(int dim)
: VectorCoefficient(dim),
ACoef(NULL), BCoef(NULL),
+5 -83
View File
@@ -114,10 +114,11 @@ public:
/// Construct the constant coefficient using a vector of constants.
/** @a c should be a vector defined by attributes, so for region with
attribute @a i @a c[i-1] is the coefficient in that region */
PWConstCoefficient(const Vector &c) { UpdateConstants(c); }
PWConstCoefficient(Vector &c)
{ constants.SetSize(c.Size()); constants=c; }
/// Update the constants with vector @a c.
void UpdateConstants(const Vector &c) { constants = c; }
void UpdateConstants(Vector &c) { constants.SetSize(c.Size()); constants=c; }
/// Return a reference to the i-th constant
real_t &operator()(int i) { return constants(i-1); }
@@ -1331,8 +1332,8 @@ public:
/// Get the coefficient located at (i,j) in the matrix.
Coefficient* GetCoeff (int i, int j) { return Coeff[i*width+j]; }
/** @brief Set the coefficient located at (i,j) in the matrix. By default
this will take ownership of the Coefficient passed in, but this
/** @brief Set the coefficient located at (i,j) in the matrix. By default by
default this will take ownership of the Coefficient passed in, but this
can be overridden with the @a own parameter. */
void Set(int i, int j, Coefficient * c, bool own=true);
@@ -1872,85 +1873,6 @@ public:
const IntegrationPoint &ip) override;
};
/// Scalar coefficient defined as component of a vector coefficient
class VectorComponentCoefficient : public Coefficient
{
private:
VectorCoefficient *a = nullptr;
mutable Vector va;
int component;
public:
/// Construct with a vector coefficient.
VectorComponentCoefficient(VectorCoefficient &A)
: a(&A), va(A.GetVDim()), component(0) {};
VectorComponentCoefficient(VectorCoefficient &A, int c);
/// Set the time for internally stored coefficients
void SetTime(real_t t) override;
/// Reset the vector coefficient
void SetACoef(VectorCoefficient &A) { a = &A; }
/// Return the vector coefficient
VectorCoefficient * GetACoef() const { return a; }
/// Set the component
void SetComponent(int c);
/// Return the component
int GetComponent() const { return component; }
/// Evaluate the trace coefficient at @a ip.
real_t Eval(ElementTransformation &T,
const IntegrationPoint &ip) override;
};
/// Scalar coefficient defined as component of a matrix coefficient
class MatrixComponentCoefficient : public Coefficient
{
private:
MatrixCoefficient *a = nullptr;
mutable DenseMatrix ma;
int row_idx,col_idx;
public:
MatrixComponentCoefficient(MatrixCoefficient &A)
: a(&A), ma(A.GetHeight(), A.GetWidth()), row_idx(0), col_idx(0) {};
/// Construct with the matrix coefficient.
MatrixComponentCoefficient(MatrixCoefficient &A, int ri, int ci);
/// Set the time for internally stored coefficients
void SetTime(real_t t) override;
/// Reset the matrix coefficient
void SetACoef(MatrixCoefficient &A) { a = &A; }
/// Return the matrix coefficient
MatrixCoefficient * GetACoef() const { return a; }
/// Reset the index
void SetRowIndex(int ri);
/// Return the index
int GetRowIndex() const { return row_idx; }
/// Reset the index
void SetColumnIndex(int ci);
/// Return the index
int GetColumnIndex() const { return col_idx; }
/// Evaluate the trace coefficient at @a ip.
real_t Eval(ElementTransformation &T,
const IntegrationPoint &ip) override;
};
/// Vector coefficient defined as the linear combination of two vectors
class VectorSumCoefficient : public VectorCoefficient
{
+1 -1
View File
@@ -10,7 +10,7 @@
// CONTRIBUTING.md for details.
#pragma once
// This is smith's tuple implementation
// This is serac's tuple implementation
#include <ostream>
#include "../../config/config.hpp"
+165
View File
@@ -12,6 +12,7 @@
#include "dgmassinv.hpp"
#include "bilinearform.hpp"
#include "dgmassinv_kernels.hpp"
#include "../general/forall.hpp"
namespace mfem
{
@@ -118,6 +119,151 @@ void DGMassInverse::Update()
DGMassInverse::~DGMassInverse() = default;
template<int DIM, int D1D, int Q1D>
void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
{
using namespace internal; // host/device kernel functions
const int NE = fes.GetNE();
const int d1d = m->dofs1D;
const int q1d = m->quad1D;
const int ND = static_cast<int>(pow(d1d, DIM));
const auto B = m->maps->B.Read();
const auto Bt = m->maps->Bt.Read();
const auto pa_data = m->pa_data.Read();
const auto dinv = diag_inv.Read();
auto r = r_.Write();
auto d = d_.Write();
auto z = z_.Write();
auto u = u_.ReadWrite();
const real_t RELTOL = rel_tol;
const real_t ABSTOL = abs_tol;
const int MAXIT = max_iter;
const bool IT_MODE = iterative_mode;
const bool CHANGE_BASIS = (d2q != nullptr);
// b is the right-hand side (if no change of basis, this just points to the
// incoming RHS vector, if we have to change basis, this points to the
// internal b2 vector where we put the transformed RHS)
const real_t *b;
// the following are non-null if we have to change basis
real_t *b2 = nullptr; // non-const access to b2
const real_t *b_orig = nullptr; // RHS vector in "original" basis
const real_t *d2q_B = nullptr; // matrix to transform initial guess
const real_t *q2d_B = nullptr; // matrix to transform solution
const real_t *q2d_Bt = nullptr; // matrix to transform RHS
if (CHANGE_BASIS)
{
d2q_B = d2q->B.Read();
q2d_B = B_.Read();
q2d_Bt = Bt_.Read();
b2 = b2_.Write();
b_orig = b_.Read();
b = b2;
}
else
{
b = b_.Read();
}
static constexpr int NB = Q1D ? Q1D : 1; // block size
mfem::forall_2D(NE, NB, NB, [=] MFEM_HOST_DEVICE (int e)
{
// Perform change of basis if needed
if (CHANGE_BASIS)
{
// Transform RHS
DGMassBasis<DIM,D1D>(e, NE, q2d_Bt, b_orig, b2, d1d);
if (IT_MODE)
{
// Transform initial guess
DGMassBasis<DIM,D1D>(e, NE, d2q_B, u, u, d1d);
}
}
const int tid = MFEM_THREAD_ID(x) + NB*MFEM_THREAD_ID(y);
// Compute first residual
if (IT_MODE)
{
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, u, r, d1d, q1d);
DGMassAxpy(e, NE, ND, 1.0, b, -1.0, r, r); // r = b - r
}
else
{
// if not in iterative mode, use zero initial guess
const int BX = MFEM_THREAD_SIZE(x);
const int BY = MFEM_THREAD_SIZE(y);
const int bxy = BX*BY;
const auto B = ConstDeviceMatrix(b, ND, NE);
auto U = DeviceMatrix(u, ND, NE);
auto R = DeviceMatrix(r, ND, NE);
for (int i = tid; i < ND; i += bxy)
{
U(i, e) = 0.0;
R(i, e) = B(i, e);
}
MFEM_SYNC_THREAD;
}
DGMassPreconditioner(e, NE, ND, dinv, r, z);
DGMassAxpy(e, NE, ND, 1.0, z, 0.0, z, d); // d = z
real_t nom = DGMassDot<NB>(e, NE, ND, d, r);
if (nom < 0.0) { return; /* Not positive definite */ }
real_t r0 = fmax(nom*RELTOL*RELTOL, ABSTOL*ABSTOL);
if (nom <= r0) { return; /* Converged */ }
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d);
real_t den = DGMassDot<NB>(e, NE, ND, z, d);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { return; }
}
// start iteration
int i = 1;
while (true)
{
const real_t alpha = nom/den;
DGMassAxpy(e, NE, ND, 1.0, u, alpha, d, u); // u = u + alpha*d
DGMassAxpy(e, NE, ND, 1.0, r, -alpha, z, r); // r = r - alpha*A*d
DGMassPreconditioner(e, NE, ND, dinv, r, z);
real_t betanom = DGMassDot<NB>(e, NE, ND, r, z);
if (betanom < 0.0) { return; /* Not positive definite */ }
if (betanom <= r0) { break; /* Converged */ }
if (++i > MAXIT) { break; }
const real_t beta = betanom/nom;
DGMassAxpy(e, NE, ND, 1.0, z, beta, d, d); // d = z + beta*d
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d); // z = A d
den = DGMassDot<NB>(e, NE, ND, d, z);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { break; }
}
nom = betanom;
}
if (CHANGE_BASIS)
{
DGMassBasis<DIM,D1D>(e, NE, q2d_B, u, u, d1d);
}
});
}
void DGMassInverse::Mult(const Vector &Mu, Vector &u) const
{
// Dispatch to templated version based on dim, d1d, and q1d.
@@ -160,4 +306,23 @@ DGMassInvKernels::DGMassInvKernels()
k::Specialization<3,6,7>::Add();
}
/// @cond Suppress_Doxygen_warnings
template <int DIM, int D1D, int Q1D>
DGMassInverse::CGKernelType DGMassInverse::CGKernels::Kernel()
{
return &DGMassInverse::DGMassCGIteration<DIM,D1D,Q1D>;
}
DGMassInverse::CGKernelType DGMassInverse::CGKernels::Fallback(
int dim, int, int)
{
if (dim == 1) { return &DGMassInverse::DGMassCGIteration<1>; }
else if (dim == 2) { return &DGMassInverse::DGMassCGIteration<2>; }
else if (dim == 3) { return &DGMassInverse::DGMassCGIteration<3>; }
else { MFEM_ABORT("Unsupported dimension."); }
}
/// @endcond
} // namespace mfem
-165
View File
@@ -15,7 +15,6 @@
#include "../linalg/kernels.hpp"
#include "kernels.hpp"
#include "integ/bilininteg_mass_kernels.hpp"
#include "dgmassinv.hpp"
namespace mfem
{
@@ -334,170 +333,6 @@ void DGMassBasis(const int e,
} // namespace internal
template<int DIM, int D1D, int Q1D>
void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
{
using namespace internal; // host/device kernel functions
const int NE = fes.GetNE();
const int d1d = m->dofs1D;
const int q1d = m->quad1D;
const int ND = static_cast<int>(pow(d1d, DIM));
const auto B = m->maps->B.Read();
const auto Bt = m->maps->Bt.Read();
const auto pa_data = m->pa_data.Read();
const auto dinv = diag_inv.Read();
auto r = r_.Write();
auto d = d_.Write();
auto z = z_.Write();
auto u = u_.ReadWrite();
const real_t RELTOL = rel_tol;
const real_t ABSTOL = abs_tol;
const int MAXIT = max_iter;
const bool IT_MODE = iterative_mode;
const bool CHANGE_BASIS = (d2q != nullptr);
// b is the right-hand side (if no change of basis, this just points to the
// incoming RHS vector, if we have to change basis, this points to the
// internal b2 vector where we put the transformed RHS)
const real_t *b;
// the following are non-null if we have to change basis
real_t *b2 = nullptr; // non-const access to b2
const real_t *b_orig = nullptr; // RHS vector in "original" basis
const real_t *d2q_B = nullptr; // matrix to transform initial guess
const real_t *q2d_B = nullptr; // matrix to transform solution
const real_t *q2d_Bt = nullptr; // matrix to transform RHS
if (CHANGE_BASIS)
{
d2q_B = d2q->B.Read();
q2d_B = B_.Read();
q2d_Bt = Bt_.Read();
b2 = b2_.Write();
b_orig = b_.Read();
b = b2;
}
else
{
b = b_.Read();
}
static constexpr int NB = Q1D ? Q1D : 1; // block size
mfem::forall_2D<NB*NB>(NE, NB, NB, [=] MFEM_HOST_DEVICE (int e)
{
// Perform change of basis if needed
if (CHANGE_BASIS)
{
// Transform RHS
DGMassBasis<DIM,D1D>(e, NE, q2d_Bt, b_orig, b2, d1d);
if (IT_MODE)
{
// Transform initial guess
DGMassBasis<DIM,D1D>(e, NE, d2q_B, u, u, d1d);
}
}
const int tid = MFEM_THREAD_ID(x) + NB*MFEM_THREAD_ID(y);
// Compute first residual
if (IT_MODE)
{
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, u, r, d1d, q1d);
DGMassAxpy(e, NE, ND, 1.0, b, -1.0, r, r); // r = b - r
}
else
{
// if not in iterative mode, use zero initial guess
const int BX = MFEM_THREAD_SIZE(x);
const int BY = MFEM_THREAD_SIZE(y);
const int bxy = BX*BY;
const auto B = ConstDeviceMatrix(b, ND, NE);
auto U = DeviceMatrix(u, ND, NE);
auto R = DeviceMatrix(r, ND, NE);
for (int i = tid; i < ND; i += bxy)
{
U(i, e) = 0.0;
R(i, e) = B(i, e);
}
MFEM_SYNC_THREAD;
}
DGMassPreconditioner(e, NE, ND, dinv, r, z);
DGMassAxpy(e, NE, ND, 1.0, z, 0.0, z, d); // d = z
real_t nom = DGMassDot<NB>(e, NE, ND, d, r);
if (nom < 0.0) { return; /* Not positive definite */ }
real_t r0 = fmax(nom*RELTOL*RELTOL, ABSTOL*ABSTOL);
if (nom <= r0) { return; /* Converged */ }
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d);
real_t den = DGMassDot<NB>(e, NE, ND, z, d);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { return; }
}
// start iteration
int i = 1;
while (true)
{
const real_t alpha = nom/den;
DGMassAxpy(e, NE, ND, 1.0, u, alpha, d, u); // u = u + alpha*d
DGMassAxpy(e, NE, ND, 1.0, r, -alpha, z, r); // r = r - alpha*A*d
DGMassPreconditioner(e, NE, ND, dinv, r, z);
real_t betanom = DGMassDot<NB>(e, NE, ND, r, z);
if (betanom < 0.0) { return; /* Not positive definite */ }
if (betanom <= r0) { break; /* Converged */ }
if (++i > MAXIT) { break; }
const real_t beta = betanom/nom;
DGMassAxpy(e, NE, ND, 1.0, z, beta, d, d); // d = z + beta*d
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d); // z = A d
den = DGMassDot<NB>(e, NE, ND, d, z);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { break; }
}
nom = betanom;
}
if (CHANGE_BASIS)
{
DGMassBasis<DIM,D1D>(e, NE, q2d_B, u, u, d1d);
}
});
}
/// @cond Suppress_Doxygen_warnings
template <int DIM, int D1D, int Q1D>
inline DGMassInverse::CGKernelType DGMassInverse::CGKernels::Kernel()
{
return &DGMassInverse::DGMassCGIteration<DIM,D1D,Q1D>;
}
inline DGMassInverse::CGKernelType DGMassInverse::CGKernels::Fallback(
int dim, int, int)
{
if (dim == 1) { return &DGMassInverse::DGMassCGIteration<1>; }
else if (dim == 2) { return &DGMassInverse::DGMassCGIteration<2>; }
else if (dim == 3) { return &DGMassInverse::DGMassCGIteration<3>; }
else { MFEM_ABORT("Unsupported dimension."); }
}
/// @endcond
} // namespace mfem
#endif
+3 -3
View File
@@ -69,9 +69,9 @@ inline int ToLexOrdering2D(const int face_id, const int size1d, const int i)
}
/// @brief Given a face DOF index on a shared face, ordered lexicographically
/// relative to the element (where the local face is face_id), return the
/// corresponding face DOF index ordered lexicographically relative to the face
/// itself.
/// relative to element the element (where the local face is face_id), and
/// return the corresponding face DOF index ordered lexicographically relative
/// to the face itself.
MFEM_HOST_DEVICE
inline int PermuteFace2D(const int face_id, const int orientation,
const int size1d, const int index)
+34 -22
View File
@@ -231,7 +231,7 @@ void FiniteElement::CalcPhysLaplacian(ElementTransformation &Trans,
{
for (int nd = 0; nd < dof; nd++)
{
Laplacian[nd] = hess(nd,0) + hess(nd,3) + hess(nd,5);
Laplacian[nd] = hess(nd,0) + hess(nd,4) + hess(nd,5);
}
}
else if (dim == 2)
@@ -268,9 +268,11 @@ void FiniteElement::CalcPhysLinLaplacian(ElementTransformation &Trans,
scale[0] = Gij(0,0);
scale[1] = 2*Gij(0,1);
scale[2] = 2*Gij(0,2);
scale[3] = Gij(1,1);
scale[4] = 2*Gij(1,2);
scale[5] = Gij(2,2);
scale[3] = 2*Gij(1,2);
scale[4] = Gij(2,2);
scale[5] = Gij(1,1);
}
else if (dim == 2)
{
@@ -307,12 +309,12 @@ void FiniteElement::CalcPhysHessian(ElementTransformation &Trans,
map[2] = 2;
map[3] = 1;
map[4] = 3;
map[5] = 4;
map[4] = 5;
map[5] = 3;
map[6] = 2;
map[7] = 4;
map[8] = 5;
map[7] = 3;
map[8] = 4;
}
else if (dim == 2)
{
@@ -380,7 +382,11 @@ const DofToQuad &FiniteElement::GetDofToQuad(const IntegrationRule &ir,
#pragma omp critical (DofToQuad)
#endif
{
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
}
if (!d2q)
{
#ifdef MFEM_THREAD_SAFE
@@ -655,22 +661,14 @@ void ScalarFiniteElement::ScalarLocalL2Restriction(
void NodalFiniteElement::CreateLexicographicFullMap(const IntegrationRule &ir)
const
{
// Get the FULL version of the map. This call contains omp critical region,
// so it is done before the critical region below.
auto &d2q = GetDofToQuad(ir, DofToQuad::FULL);
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
#pragma omp critical (DofToQuad)
#endif
{
// If the new Dof2Quad is already present, e.g. added in a previous call
// or added by another omp thread, return.
if (DofToQuad::SearchArray(dof2quad_array, ir,
DofToQuad::LEXICOGRAPHIC_FULL))
{ return; }
// Undo the native ordering which is what FiniteElement::GetDofToQuad
// returns.
// Get the FULL version of the map.
auto &d2q = GetDofToQuad(ir, DofToQuad::FULL);
//Undo the native ordering which is what FiniteElement::GetDofToQuad returns.
auto *d2q_new = new DofToQuad(d2q);
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
const int nqpt = ir.GetNPoints();
@@ -726,7 +724,13 @@ const DofToQuad &NodalFiniteElement::GetDofToQuad(const IntegrationRule &ir,
#pragma omp critical (DofToQuad)
#endif
{
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
//Should make this loop a function of FiniteElement
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule == &ir && d2q->mode == mode) { break; }
d2q = nullptr;
}
}
if (d2q) { return *d2q; }
if (mode != DofToQuad::LEXICOGRAPHIC_FULL)
@@ -2627,7 +2631,15 @@ const DofToQuad &TensorBasisElement::GetTensorDofToQuad(
#pragma omp critical (DofToQuad)
#endif
{
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
for (int i = 0; i < dof2quad_array.Size(); i++)
{
auto* d2q_ = dof2quad_array[i];
if (d2q_->IntRule == &ir && d2q_->mode == mode)
{
d2q = d2q_;
break;
}
}
if (!d2q)
{
d2q = new DofToQuad;
+3 -25
View File
@@ -44,7 +44,7 @@ public:
NumBasisTypes = 9 /**< Keep track of maximum types to prevent
hard-coding */
};
/** @brief If the input does not represent a valid BasisType, abort with an
/** @brief If the input does not represents a valid BasisType, abort with an
error; otherwise return the input. */
static int Check(int b_type)
{
@@ -52,7 +52,7 @@ public:
"unknown BasisType: " << b_type);
return b_type;
}
/** @brief If the input does not represent a valid nodal BasisType, abort
/** @brief If the input does not represents a valid nodal BasisType, abort
with an error; otherwise return the input. */
static int CheckNodal(int b_type)
{
@@ -222,12 +222,6 @@ public:
/// Returns absolute value of the maps
DofToQuad Abs() const;
/// Auxiliary function for searching DofToQuad arrays.
static inline DofToQuad *SearchArray(
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode);
};
/// Describes the function space on each element
@@ -413,7 +407,6 @@ public:
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
part of the Hessian of one shape function.
The order in 2D is {u_xx, u_xy, u_yy}.
The order in 3D is {u_xx, u_xy, u_xz, u_yy, u_yz, u_zz}.
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
@@ -1127,7 +1120,7 @@ public:
return GetPoints(p, btype, on_device);
}
/// Get coordinates of a closed (GaussLobatto) set of points if degree @a p
/// Get coordinates of a closed (GaussLegendre) set of points if degree @a p
const real_t *ClosedPoints(const int p,
const int btype = BasisType::GaussLobatto,
bool on_device = false)
@@ -1383,21 +1376,6 @@ public:
void InvertLinearTrans(ElementTransformation &trans,
const IntegrationPoint &pt, Vector &x);
// static inline method
inline DofToQuad *DofToQuad::SearchArray(
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode)
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
DofToQuad *d2q = dof2quad_array[i];
if (d2q->IntRule == &ir && d2q->mode == mode) { return d2q; }
}
return nullptr;
}
} // namespace mfem
#endif
-48
View File
@@ -60,12 +60,6 @@ void Linear1DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(1,0) = 1.;
}
void Linear1DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
Linear2DFiniteElement::Linear2DFiniteElement()
: NodalFiniteElement(2, Geometry::TRIANGLE, 3, 1)
{
@@ -93,11 +87,6 @@ void Linear2DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(2,0) = 0.; dshape(2,1) = 1.;
}
void Linear2DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
BiLinear2DFiniteElement::BiLinear2DFiniteElement()
: NodalFiniteElement(2, Geometry::SQUARE, 4, 1, FunctionSpace::Qk)
@@ -1267,12 +1256,6 @@ void Linear3DFiniteElement::CalcDShape(const IntegrationPoint &ip,
}
}
void Linear3DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
void Linear3DFiniteElement::GetFaceDofs (int face, int **dofs, int *ndofs)
const
{
@@ -1649,37 +1632,6 @@ void TriLinear3DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(7,2) = ox * y;
}
void TriLinear3DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
real_t x = ip.x, y = ip.y, z = ip.z;
real_t ox = 1.-x, oy = 1.-y, oz = 1.-z;
h(0,0) = 0.; h(0,1) = oz; h(0,2) = oy;
h(0,3) = 0.; h(0,4) = ox; h(0,5) = 0.;
h(1,0) = 0.; h(1,1) = -oz; h(1,2) = -oy;
h(1,3) = 0.; h(1,4) = x; h(1,5) = 0.;
h(2,0) = 0.; h(2,1) = oz; h(2,2) = -y;
h(2,3) = 0.; h(2,4) = -x; h(2,5) = 0.;
h(3,0) = 0.; h(3,1) = -oz; h(3,2) = y;
h(3,3) = 0.; h(3,4) = -ox; h(3,5) = 0.;
h(4,0) = 0.; h(4,1) = z; h(4,2) = -oy;
h(4,3) = 0.; h(4,4) = -ox; h(4,5) = 0.;
h(5,0) = 0.; h(5,1) = -z; h(5,2) = oy;
h(5,3) = 0.; h(5,4) = -x; h(5,5) = 0.;
h(6,0) = 0.; h(6,1) = z; h(6,2) = y;
h(6,3) = 0.; h(6,4) = x; h(6,5) = 0.;
h(7,0) = 0.; h(7,1) = -z; h(7,2) = -y;
h(7,3) = 0.; h(7,4) = ox; h(7,5) = 0.;
}
P0SegmentFiniteElement::P0SegmentFiniteElement(int Ord)
: NodalFiniteElement(1, Geometry::SEGMENT, 1, Ord) // default Ord = 0
+1 -9
View File
@@ -50,8 +50,6 @@ public:
contains the derivative of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
};
/// A 2D linear element on triangle with nodes at the vertices of the triangle
@@ -72,8 +70,6 @@ public:
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
@@ -408,9 +404,6 @@ public:
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
@@ -452,8 +445,7 @@ public:
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
+5 -519
View File
@@ -84,46 +84,6 @@ void NURBS1DFiniteElement::CalcHessian (const IntegrationPoint &ip,
add(1.0, hess, (-d2sum + 2*dsum*dsum*sum)*sum*sum, shape_x, hess);
}
void NURBS1DFiniteElement::Project(Coefficient &coeff,
ElementTransformation &Trans,
Vector &dofs) const
{
IntegrationPoint ip;
for (int i = 0; i <= order; i++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+order)) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+order);
Trans.SetIntPoint(&ip);
dofs(i) = coeff.Eval(Trans, ip);
}
}
void NURBS1DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == vc.GetVDim()*dof, "");
Vector x(vc.GetVDim());
IntegrationPoint ip;
for (int i = 0; i <= order; i++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+order)) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+order);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
for (int j = 0; j < x.Size(); j++)
{
dofs(dof*j+i) = x(j);
}
}
}
void NURBS2DFiniteElement::SetOrder() const
{
@@ -255,63 +215,6 @@ void NURBS2DFiniteElement::CalcHessian (const IntegrationPoint &ip,
}
}
void NURBS2DFiniteElement::Project(Coefficient &coeff,
ElementTransformation &Trans,
Vector &dofs) const
{
IntegrationPoint ip;
for (int o = 0, j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
dofs(o) = coeff.Eval(Trans, ip);
}
}
}
void NURBS2DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == vc.GetVDim()*dof, "");
Vector x(vc.GetVDim());
IntegrationPoint ip;
for (int o = 0, j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
for (int v = 0; v < x.Size(); v++)
{
dofs(dof*v+o) = x(v);
}
}
}
}
void NURBS3DFiniteElement::SetOrder() const
{
@@ -445,10 +348,11 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
d2sum[0] += ( hessian(o,0) = d2sx*sy*sz*weights(o) );
d2sum[1] += ( hessian(o,1) = dsx*dsy*sz*weights(o) );
d2sum[2] += ( hessian(o,2) = dsx*sy*dsz*weights(o) );
d2sum[3] += ( hessian(o,3) = sx*d2sy*sz*weights(o) );
d2sum[4] += ( hessian(o,4) = sx*dsy*dsz*weights(o) );
d2sum[5] += ( hessian(o,5) = sx*sy*d2sz*weights(o) );
d2sum[3] += ( hessian(o,3) = sx*dsy*dsz*weights(o) );
d2sum[4] += ( hessian(o,4) = sx*sy*d2sz*weights(o) );
d2sum[5] += ( hessian(o,5) = sx*d2sy*sz*weights(o) );
}
}
}
@@ -497,85 +401,6 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
}
}
void NURBS3DFiniteElement::Project(Coefficient &coeff,
ElementTransformation &Trans,
Vector &dofs) const
{
IntegrationPoint ip;
for (int o = 0, k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 1)*(orders[1] + 1);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
dofs(o) = coeff.Eval(Trans, ip);
}
}
}
}
void NURBS3DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == vc.GetVDim()*dof, "");
Vector x(vc.GetVDim());
IntegrationPoint ip;
for (int o = 0, k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 1)*(orders[1] + 1);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
for (int v = 0; v < x.Size(); v++)
{
dofs(dof*v+o) = x(v);
}
}
}
}
}
void NURBS_HDiv2DFiniteElement::SetOrder() const
{
@@ -692,63 +517,6 @@ void NURBS_HDiv2DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
}
}
void NURBS_HDiv2DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 2, "");
Vector x(2), mx(2);
IntegrationPoint ip;
int o = 0;
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(0);
}
}
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(1);
}
}
}
NURBS_HDiv2DFiniteElement::~NURBS_HDiv2DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
@@ -928,120 +696,6 @@ void NURBS_HDiv3DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
}
}
void NURBS_HDiv3DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 3, "");
Vector x(2), mx(3);
IntegrationPoint ip;
int o = 0;
for (int k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 2)*(orders[1] + 1);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(0);
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 1)*(orders[1] + 2);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(1);
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
real_t kz = kv1[2]->GetBotella(ijk[2] + k);
if (!kv1[2]->inSpan(kz, ijk[2]+orders[2]+1))
{
o += (orders[0] + 1)*(orders[1] + 1);
continue;
}
ip.z = kv1[2]->GetRefPoint(kz, ijk[2]+orders[2]+1);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(2);
}
}
}
}
NURBS_HDiv3DFiniteElement::~NURBS_HDiv3DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
@@ -1163,68 +817,13 @@ void NURBS_HCurl2DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
}
}
void NURBS_HCurl2DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 2, "");
Vector x(2), xm(2);
IntegrationPoint ip;
int i, j, o;
for (o = 0, j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(0);
}
}
for (j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(1);
}
}
}
NURBS_HCurl2DFiniteElement::~NURBS_HCurl2DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
}
void NURBS_HCurl3DFiniteElement::SetOrder() const
{
orders[0] = kv[0]->GetOrder();
@@ -1404,124 +1003,11 @@ void NURBS_HCurl3DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
curl_shape(o,0) = shape1_x(i)*dsy1_sz;
curl_shape(o,1) = -dshape1_x(i)*sy1_sz;
curl_shape(o,2) = 0.0;
}
}
}
}
void NURBS_HCurl3DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 3, "");
Vector x(3), xm(3);
IntegrationPoint ip;
int o = 0;
for (int k = 0; k <= orders[2]+1; k++)
{
real_t kz = kv1[2]->GetBotella(ijk[2] + k);
if (!kv1[2]->inSpan(kz, ijk[2]+orders[2]+1))
{
o += (orders[0] + 1)*(orders[1] + 2);
continue;
}
ip.z = kv1[2]->GetRefPoint(kz, ijk[2]+orders[2]+1);
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(0);
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
real_t kz = kv1[2]->GetBotella(ijk[2] + k);
if (!kv1[2]->inSpan(kz, ijk[2]+orders[2]+1))
{
o += (orders[0] + 2)*(orders[1] + 1);
continue;
}
ip.z = kv1[2]->GetRefPoint(kz, ijk[2]+orders[2]+1);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(1);
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 2)*(orders[1] + 2);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 2;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(2);
}
}
}
}
NURBS_HCurl3DFiniteElement::~NURBS_HCurl3DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
-64
View File
@@ -86,18 +86,6 @@ public:
DenseMatrix &dshape) const override;
void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &hessian) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const override;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
};
/// An arbitrary order 2D NURBS element on a square
@@ -133,18 +121,6 @@ public:
DenseMatrix &dshape) const override;
void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &hessian) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const override;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
};
/// An arbitrary order 3D NURBS element on a cube
@@ -185,18 +161,6 @@ public:
DenseMatrix &dshape) const override;
void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &hessian) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const override;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
};
@@ -278,13 +242,6 @@ public:
void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HDiv2DFiniteElement();
};
@@ -379,13 +336,6 @@ public:
void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HDiv3DFiniteElement();
};
@@ -465,13 +415,6 @@ public:
void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HCurl2DFiniteElement();
};
@@ -563,13 +506,6 @@ public:
void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HCurl3DFiniteElement();
};
+13 -13
View File
@@ -111,36 +111,36 @@ public:
| :------: | :---: | :---: | :-------: | :-----: | :---: |
| H1_[DIM]_[ORDER] | H1 | * | 1 | VALUE | H1 nodal elements |
| H1@[BTYPE]_[DIM]_[ORDER] | H1 | * | * | VALUE | H1 nodal elements |
| H1Pos_[DIM]_[ORDER] | H1 | * | 2 | VALUE | H1 nodal elements |
| H1Pos_[DIM]_[ORDER] | H1 | * | 1 | VALUE | H1 nodal elements |
| H1Pos_Trace_[DIM]_[ORDER] | H^{1/2} | * | 2 | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| H1_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| H1_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| H1_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| ND_[DIM]_[ORDER] | H(curl) | * | 1 / 0 | H_CURL | Nedelec vector elements |
| ND@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(curl) | * | * / * | H_CURL | Nedelec vector elements |
| ND_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces,edges) |
| ND_Trace@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * / * | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces,edges) |
| ND_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces) |
| ND_Trace@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces) |
| ND_R1D_[DIM]_[ORDER] | H(curl) | * | 1 / 0 | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 1D. |
| ND_R1D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(curl) | * | * / * | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 1D. |
| ND_R2D_[DIM]_[ORDER] | H(curl) | * | 1 / 0 | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 2D. |
| ND_R2D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(curl) | * | * / * | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 2D. |
| RT_[DIM]_[ORDER] | H(div) | * | 1 / 0 | H_DIV | Raviart-Thomas vector elements |
| RT@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(div) | * | * / * | H_DIV | Raviart-Thomas vector elements |
| RT_Trace_[DIM]_[ORDER] | H^{1/2} | * | 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace_[DIM]_[ORDER] | H^{1/2} | * | 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_R1D_[DIM]_[ORDER] | H(div) | * | 1 / 0 | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 1D. |
| RT_R1D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(div) | * | * / * | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 1D. |
| RT_R2D_[DIM]_[ORDER] | H(div) | * | 1 / 0 | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 2D. |
| RT_R2D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(div) | * | * / * | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 2D. |
| L2_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | * | VALUE | Discontinuous L2 elements |
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
| L2Int_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | * | INTEGRAL | Discontinuous L2 elements |
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
| DG_Iface_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_Iface@[BTYPE]_[DIM]_[ORDER] | - | * | * | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_Iface@[BTYPE]_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface_[DIM]_[ORDER] | - | * | 0 | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface@[BTYPE]_[DIM]_[ORDER] | - | * | * | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface@[BTYPE]_[DIM]_[ORDER] | - | * | 0 | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
| NURBS[ORDER] | - | * | - | VALUE | Non-Uniform Rational B-Splines (NURBS) elements |
| LinearNonConf3D | - | 1 | 1 | VALUE | Piecewise-linear nonconforming finite elements in 3D |
| CrouzeixRaviart | - | - | - | - | Crouzeix-Raviart nonconforming elements in 2D |
@@ -172,7 +172,7 @@ public:
| :------: | :--------: |
| [DIM] | Dimension of the elements (1D, 2D, 3D) |
| [ORDER] | Approximation order of the elements (P0, P1, P2, ...) |
| [BTYPE] | BasisType of the element (0-GaussLegendre, 1-GaussLobatto, 2-Bernstein, 3-OpenUniform, 4-CloseUniform, 5-OpenHalfUniform 6-Serendipity 7-ClosedGL 8-IntegratedGLL) |
| [BTYPE] | BasisType of the element (0-GaussLegendre, 1 - GaussLobatto, 2-Bernstein, 3-OpenUniform, 4-CloseUniform, 5-OpenHalfUniform) |
| [OBTYPE] | Open BasisType of the element for elements which have both types |
| [CBTYPE] | Closed BasisType of the element for elements which have both types |
+13 -50
View File
@@ -1516,76 +1516,36 @@ const FaceRestriction *FiniteElementSpace::GetFaceRestriction(
const bool is_dg_space = IsDGSpace();
const L2FaceValues m = (is_dg_space && mul==L2FaceValues::DoubleValued) ?
L2FaceValues::DoubleValued : L2FaceValues::SingleValued;
auto key = std::make_tuple(is_dg_space, f_ordering, type, m);
key_face key = std::make_tuple(is_dg_space, f_ordering, type, m);
auto itr = L2F.find(key);
if (itr != L2F.end())
{
return itr->second.get();
return itr->second;
}
else
{
std::unique_ptr<FaceRestriction> res;
FaceRestriction *res;
if (is_dg_space)
{
if (Conforming())
{
res.reset(new L2FaceRestriction(*this, f_ordering, type, m));
res = new L2FaceRestriction(*this, f_ordering, type, m);
}
else
{
res.reset(new NCL2FaceRestriction(*this, f_ordering, type, m));
res = new NCL2FaceRestriction(*this, f_ordering, type, m);
}
}
else if (dynamic_cast<const DG_Interface_FECollection*>(fec))
{
res.reset(new L2InterfaceFaceRestriction(*this, f_ordering, type));
res = new L2InterfaceFaceRestriction(*this, f_ordering, type);
}
else
{
res.reset(new ConformingFaceRestriction(*this, f_ordering, type));
res = new ConformingFaceRestriction(*this, f_ordering, type);
}
return L2F.emplace(key, std::move(res)).first->second.get();
}
}
const InterpolationManager &FiniteElementSpace::GetInterpolationManager(
ElementDofOrdering f_ordering, FaceType type) const
{
const auto key = make_tuple(f_ordering, type);
auto it = interpolations.find(key);
if (it != interpolations.end())
{
return *it->second;
}
else
{
auto interp = make_unique<InterpolationManager>(*this, f_ordering, type);
int face_idx = 0;
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
if (!face.IsOfFaceType(type) || face.IsNonconformingCoarse())
{
continue;
}
if (face.IsConforming() || face.IsBoundary())
{
interp->RegisterFaceConformingInterpolation(face, face_idx);
}
else
{
interp->RegisterFaceCoarseToFineInterpolation(face, face_idx);
}
++face_idx;
}
// Transform the interpolation matrix map into contiguous memory.
interp->LinearizeInterpolatorMapIntoVector();
interp->InitializeNCInterpConfig();
return *interpolations.emplace(key, std::move(interp)).first->second;
L2F[key] = res;
return res;
}
}
@@ -4009,8 +3969,11 @@ void FiniteElementSpace::Destroy()
delete E2Q_array[i];
}
E2Q_array.SetSize(0);
for (auto &x : L2F)
{
delete x.second;
}
L2F.clear();
interpolations.clear();
for (int i = 0; i < E2IFQ_array.Size(); i++)
{
delete E2IFQ_array[i];
+12 -9
View File
@@ -13,7 +13,6 @@
#define MFEM_FESPACE
#include "../config/config.hpp"
#include "../general/hash_util.hpp"
#include "../linalg/ordering.hpp"
#include "../linalg/sparsemat.hpp"
#include "../mesh/mesh.hpp"
@@ -321,11 +320,18 @@ protected:
mutable OperatorHandle L2E_nat, L2E_lex;
/// The face restriction operators, see GetFaceRestriction().
using key_face = std::tuple<bool, ElementDofOrdering, FaceType, L2FaceValues>;
mutable std::unordered_map<key_face,std::unique_ptr<FaceRestriction>,
TupleHasher> L2F;
mutable std::unordered_map<std::tuple<ElementDofOrdering,FaceType>,
std::unique_ptr<InterpolationManager>, TupleHasher> interpolations;
struct key_hash
{
std::size_t operator()(const key_face& k) const
{
return std::get<0>(k)
+ 2 * (int)std::get<1>(k)
+ 4 * (int)std::get<2>(k)
+ 8 * (int)std::get<3>(k);
}
};
using map_L2F = std::unordered_map<const key_face,FaceRestriction*,key_hash>;
mutable map_L2F L2F;
mutable Array<QuadratureInterpolator*> E2Q_array;
mutable Array<FaceQuadratureInterpolator*> E2IFQ_array;
@@ -745,9 +751,6 @@ public:
ElementDofOrdering f_ordering, FaceType,
L2FaceValues mul = L2FaceValues::DoubleValued) const;
const InterpolationManager &GetInterpolationManager(
ElementDofOrdering f_ordering, FaceType type) const;
/** @brief Return a QuadratureInterpolator that interpolates E-vectors to
quadrature point values and/or derivatives (Q-vectors). */
/** An E-vector represents the element-wise discontinuous version of the FE
+60 -521
View File
@@ -2352,83 +2352,52 @@ void GridFunction::ProjectDeltaCoefficient(DeltaCoefficient &delta_coeff,
}
}
void GridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
void GridFunction::ProjectCoefficient(Coefficient &coeff)
{
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
DofTransformation doftrans;
Array<int> vdofs;
Vector vals;
if (delta_c == NULL)
{
if (fes->GetNURBSext() == NULL)
{
switch (type)
Array<int> vdofs;
Vector vals;
for (int i = 0; i < fes->GetNE(); i++)
{
case ProjectType::ELEMENT_L2:
ProjectCoefficientElementL2(coeff);
return;
case ProjectType::GLOBAL_L2:
ProjectCoefficientGlobalL2(coeff);
return;
default:
for (int i = 0; i < fes->GetNE(); i++)
{
fes->GetElementVDofs(i, vdofs, doftrans);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
doftrans.TransformPrimal(vals);
SetSubVector(vdofs, vals);
}
fes->GetElementVDofs(i, vdofs, doftrans);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
doftrans.TransformPrimal(vals);
SetSubVector(vdofs, vals);
}
}
else
{
switch (type)
{
case ProjectType::DEFAULT:
case ProjectType::ELEMENT_L2:
ProjectCoefficientElementL2(coeff);
return;
case ProjectType::GLOBAL_L2:
ProjectCoefficientGlobalL2(coeff);
return;
case ProjectType::ELEMENT:
constexpr real_t signal = std::numeric_limits<real_t>::min();
// Define and assemble linear form
LinearForm b(fes);
b.AddDomainIntegrator(new DomainLFIntegrator(coeff));
b.Assemble();
for (int i = 0; i < fes->GetNE(); i++)
{
fes->GetElementVDofs(i, vdofs, doftrans);
vals.SetSize(vdofs.Size());
vals = signal;
// Define and assemble bilinear form
BilinearForm a(fes);
a.AddDomainIntegrator(new MassIntegrator());
a.Assemble();
fes->GetFE(i)->Project(coeff,
*fes->GetElementTransformation(i),
vals);
doftrans.TransformPrimal(vals);
// Set solver and preconditioner
SparseMatrix A(a.SpMat());
GSSmoother prec(A);
CGSolver cg;
cg.SetOperator(A);
cg.SetPreconditioner(prec);
cg.SetRelTol(1e-12);
cg.SetMaxIter(1000);
cg.SetPrintLevel(0);
// Remove undefined dofs
// The knot location (either Botella, Demko or Greville point)
// where the NURBS dof are evaluated might fall outside of the
// domain of the element. In that case the value is not set, and
// the value remains the signal value.
int s = 0;
for (int ii = 0; ii < vals.Size(); ii++)
{
if (vals[ii] != signal)
{
vdofs[s] = vdofs[ii];
vals(s) = vals(ii);
s++;
}
}
vdofs.SetSize(s);
vals.SetSize(s);
// Add reduced dofs to global vector
SetSubVector(vdofs, vals);
}
}
// Solve and get solution
*this = 0.0;
cg.Mult(b,*this);
}
}
else
@@ -2441,167 +2410,6 @@ void GridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
}
}
void GridFunction::ProjectCoefficientGlobalL2(Coefficient &coeff, real_t rtol,
int iter)
{
// Define and assemble linear form
LinearForm b(fes);
b.AddDomainIntegrator(new DomainLFIntegrator(coeff));
b.Assemble();
// Define and assemble bilinear form
BilinearForm a(fes);
a.AddDomainIntegrator(new MassIntegrator());
a.Assemble();
// Set solver and preconditioner
SparseMatrix A(a.SpMat());
GSSmoother prec(A);
CGSolver cg;
cg.SetOperator(A);
cg.SetPreconditioner(prec);
cg.SetRelTol(rtol);
cg.SetMaxIter(iter);
cg.SetPrintLevel(0);
// Solve and get solution
*this = 0.0;
cg.Mult(b,*this);
}
void GridFunction::ProjectCoefficientElementL2(Coefficient &coeff)
{
Vector Va;
ProjectCoefficientElementL2_(coeff, *this, Va);
(*this) /= Va;
}
void GridFunction::ProjectCoefficientElementL2_(Coefficient &coeff,
Vector &x, Vector &Va)
{
DofTransformation doftrans;
Array<int> vdofs;
Vector shape,shape2, elvect, elwght;
DenseMatrix elmat;
Va.SetSize(fes->GetNDofs() );
x.SetSize(fes->GetNDofs() );
Va = 0.0;
x = 0.0;
if (fes->GetNURBSext() == NULL)
{
for (int e = 0; e < fes->GetNE(); e++)
{
fes->GetElementDofs (e, vdofs, doftrans);
ElementTransformation &tr = *fes -> GetElementTransformation (e);
const FiniteElement &el = *fes->GetFE(e);
int dof = el.GetDof();
shape.SetSize(dof);
elvect.SetSize(dof);
elwght.SetSize(dof);
elmat.SetSize(dof,dof);
elvect = 0.0;
elwght = 0.0;
elmat = 0.0;
const IntegrationRule &ir = IntRules.Get(el.GetGeomType(),
2 * el.GetOrder() + 1);
// Element vector & weight
for (int i = 0; i < ir.GetNPoints(); i++)
{
const IntegrationPoint &ip = ir.IntPoint(i);
tr.SetIntPoint (&ip);
real_t wght = ip.weight*tr.Weight();
real_t val = coeff.Eval(tr, ip);
el.CalcPhysShape(tr, shape);
elvect.Add(wght * val, shape);
elwght.Add(wght, shape);
AddMult_a_VVt(wght, shape, elmat);
}
// Solve
if (!LinearSolve(elmat, elvect.GetData(),1e-12))
{
MFEM_WARNING("Error in inverting element local matrix");
}
// Scale
elvect *= elwght;
// Add reduced dofs to global vector
x.AddElementVector(vdofs, elvect);
Va.AddElementVector(vdofs, elwght);
}
}
else
{
for (int e = 0; e < fes->GetNE(); e++)
{
fes->GetElementDofs (e, vdofs, doftrans);
ElementTransformation &tr = *fes -> GetElementTransformation (e);
const FiniteElement &el = *fes->GetFE(e);
int dof = el.GetDof();
int dim = el.GetDim();
int p = el.GetOrder();
L2_FECollection fe_coll(p, dim);
//H1_FECollection fe_coll(p, dim, BasisType::Positive);
const FiniteElement &el2 = *fe_coll.FiniteElementForGeometry(el.GetGeomType());
MFEM_ASSERT(el2.GetDof() == dof, "Element dofs do not match.");
shape.SetSize(dof);
shape2.SetSize(dof);
elvect.SetSize(dof);
elwght.SetSize(dof);
elmat.SetSize(dof,dof);
elvect = 0.0;
elwght = 0.0;
elmat = 0.0;
const IntegrationRule &ir = IntRules.Get(el.GetGeomType(),
2 * el.GetOrder() + 1);
// Element vector & weight
for (int i = 0; i < ir.GetNPoints(); i++)
{
const IntegrationPoint &ip = ir.IntPoint(i);
tr.SetIntPoint (&ip);
real_t wght = ip.weight*tr.Weight();
real_t val = coeff.Eval(tr, ip);
el.CalcPhysShape(tr, shape);
el2.CalcPhysShape(tr, shape2);
elvect.Add(wght * val, shape2);
elwght.Add(wght, shape);
AddMult_a_VVt(wght, shape2, elmat);
}
// Solve
if (!LinearSolve(elmat, elvect.GetData(),1e-12))
{
MFEM_WARNING("Error in inverting element local matrix 2");
}
// Map to NURBS
DenseMatrix I;
el2.Project(el,tr,I);
if (!LinearSolve(I, elvect.GetData(),1e-32))
{
MFEM_WARNING("Error in inverting element local matrix 3");
}
// Scale
elvect *= elwght;
// Add reduced dofs to global vector
x.AddElementVector(vdofs, elvect);
Va.AddElementVector(vdofs, elwght);
}
}
}
void GridFunction::ProjectCoefficient(
Coefficient &coeff, Array<int> &dofs, int vd)
{
@@ -2626,318 +2434,49 @@ void GridFunction::ProjectCoefficient(
}
}
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff,
ProjectType type)
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff)
{
Array<int> vdofs;
Vector vals;
DofTransformation doftrans;
if (fes->GetNURBSext() == NULL)
{
switch (type)
int i;
Array<int> vdofs;
Vector vals;
for (i = 0; i < fes->GetNE(); i++)
{
case ProjectType::ELEMENT_L2:
ProjectCoefficientElementL2(vcoeff);
return;
case ProjectType::GLOBAL_L2:
ProjectCoefficientGlobalL2(vcoeff);
return;
default:
for (int i = 0; i < fes->GetNE(); i++)
{
fes->GetElementVDofs(i, vdofs, doftrans);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
doftrans.TransformPrimal(vals);
SetSubVector(vdofs, vals);
}
fes->GetElementVDofs(i, vdofs, doftrans);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
doftrans.TransformPrimal(vals);
SetSubVector(vdofs, vals);
}
}
else
{
switch (type)
{
case ProjectType::DEFAULT:
case ProjectType::ELEMENT_L2:
ProjectCoefficientElementL2(vcoeff);
return;
case ProjectType::GLOBAL_L2:
ProjectCoefficientGlobalL2(vcoeff);
return;
case ProjectType::ELEMENT:
constexpr real_t signal = std::numeric_limits<real_t>::min();
for (int i = 0; i < fes->GetNE(); i++)
{
fes->GetElementVDofs(i, vdofs, doftrans);
vals.SetSize(vdofs.Size());
vals = signal;
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
doftrans.TransformPrimal(vals);
// Remove undefined dofs
// The knot location (either Botella, Demko or Greville point)
// where the NURBS dof are evaluated might fall outside of the
// domain of the element. In that case the value is not set, and
// the value remains the signal value.
int s = 0;
for (int ii = 0; ii < vals.Size(); ii++)
{
if (vals[ii] != signal)
{
vdofs[s] = vdofs[ii];
vals(s) = vals(ii);
s++;
}
}
vdofs.SetSize(s);
vals.SetSize(s);
// Add reduced dofs to global vector
SetSubVector(vdofs, vals);
}
}
}
}
void GridFunction::ProjectCoefficientGlobalL2(VectorCoefficient &vcoeff,
real_t rtol, int iter)
{
// Define and assemble linear form
LinearForm b(fes);
BilinearForm a(fes);
if (fes->GetTypicalFE()->GetRangeType() == mfem::FiniteElement::VECTOR)
{
// Define and assemble linear form
LinearForm b(fes);
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(vcoeff));
b.Assemble();
// Define and assemble bilinear form
BilinearForm a(fes);
a.AddDomainIntegrator(new VectorFEMassIntegrator());
}
else
{
b.AddDomainIntegrator(new VectorDomainLFIntegrator(vcoeff));
a.AddDomainIntegrator(new VectorMassIntegrator());
}
a.Assemble();
b.Assemble();
a.Assemble();
// Set solver and preconditioner
SparseMatrix A(a.SpMat());
GSSmoother prec(A);
CGSolver cg;
cg.SetOperator(A);
cg.SetPreconditioner(prec);
cg.SetRelTol(rtol);
cg.SetMaxIter(iter);
cg.SetPrintLevel(0);
// Set solver and preconditioner
SparseMatrix A(a.SpMat());
GSSmoother prec(A);
CGSolver cg;
cg.SetOperator(A);
cg.SetPreconditioner(prec);
cg.SetRelTol(1e-12);
cg.SetMaxIter(1000);
cg.SetPrintLevel(0);
// Solve and get solution
*this = 0.0;
cg.Mult(b,*this);
}
void GridFunction::ProjectCoefficientElementL2_(VectorCoefficient &vcoeff,
Vector &x, Vector &Va)
{
DofTransformation doftrans;
Array<int> vdofs;
Vector shapel2, elvect, elwght, val;
DenseMatrix shape, elmat;
Va.SetSize(Size());
x.SetSize(Size());
Va = 0.0;
x = 0.0;
if (fes->GetNURBSext() == NULL)
{
for (int e = 0; e < fes->GetNE(); e++)
{
fes->GetElementVDofs (e, vdofs, doftrans);
ElementTransformation &tr = *fes -> GetElementTransformation (e);
const FiniteElement &el = *fes->GetFE(e);
int dof = el.GetDof();
int dim = el.GetRangeDim();
shape.SetSize(dof,dim);
shapel2.SetSize(dof);
elvect.SetSize(dof);
elwght.SetSize(dof);
elmat.SetSize(dof,dof);
elvect = 0.0;
elwght = 0.0;
elmat = 0.0;
const IntegrationRule &ir = IntRules.Get(el.GetGeomType(),
2 * el.GetOrder() + 1);
// Element vector & weight
for (int i = 0; i < ir.GetNPoints(); i++)
{
const IntegrationPoint &ip = ir.IntPoint(i);
tr.SetIntPoint (&ip);
real_t wght = ip.weight*tr.Weight();
vcoeff.Eval(val, tr, ip);
val *= wght;
el.CalcPhysVShape(tr, shape);
shape.AddMult (val, elvect);
AddMult_a_AAt(wght, shape, elmat);
shape.GetRowl2(shapel2);
elwght.Add(wght, shapel2);
}
// Solve
if (!LinearSolve(elmat, elvect.GetData(),1e-12))
{
MFEM_WARNING("Error in inverting element local matrix");
}
// Scale
elvect *= elwght;
// Add to global vector
x.AddElementVector(vdofs, elvect);
// Add to weight vector -- no need for an orientation
for (int i = 0; i < vdofs.Size(); i++)
{
vdofs[i] = FiniteElementSpace::DecodeDof(vdofs[i]);
}
Va.AddElementVector(vdofs, elwght);
}
}
else
{
DenseMatrix partelmat;
Vector shape2;
if (fes->GetTypicalFE()->GetOrder() >= 6 )
{
MFEM_WARNING("This project is not stable for"
"NURBS VectorFE with order >= 5");
}
for (int e = 0; e < fes->GetNE(); e++)
{
fes->GetElementVDofs (e, vdofs, doftrans);
ElementTransformation &tr = *fes -> GetElementTransformation (e);
const FiniteElement &el = *fes->GetFE(e);
int dof = el.GetDof();
int dim = el.GetRangeDim();
int p = el.GetOrder();
L2_FECollection fe_coll(p, dim);
const FiniteElement &el2 = *fe_coll.FiniteElementForGeometry(el.GetGeomType());
int dof2 = el2.GetDof();
MFEM_ASSERT(dof2*dim >= dof, "Element dofs do not match.");
shape2.SetSize(dof2);
shape.SetSize(dof,dim);
shapel2.SetSize(dof);
elvect.SetSize(dof2*dim);
elwght.SetSize(dof);
elmat.SetSize(dof2*dim,dof2*dim);
partelmat.SetSize(dof2,dof2);
elvect = 0.0;
elwght = 0.0;
elmat = 0.0;
const IntegrationRule &ir = IntRules.Get(el.GetGeomType(),
2 * el.GetOrder() + 1);
// Element vector & weight
for (int i = 0; i < ir.GetNPoints(); i++)
{
const IntegrationPoint &ip = ir.IntPoint(i);
tr.SetIntPoint (&ip);
real_t wght = ip.weight*tr.Weight();
vcoeff.Eval(val, tr, ip);
val *= wght;
el2.CalcPhysShape(tr, shape2);
el.CalcPhysVShape(tr, shape);
for (int k = 0; k < dim; k++)
{
for (int s = 0; s < dof2; s++)
{
elvect(dof2*k+s) += val(k) * shape2(s);
}
}
MultVVt(shape2, partelmat);
partelmat *= wght;
for (int k = 0; k < dim; k++)
{
elmat.AddMatrix(partelmat, dof2*k, dof2*k);
}
shape.GetRowl2(shapel2);
elwght.Add(wght, shapel2);
}
// Solve
if (!LinearSolve(elmat, elvect.GetData()))
{
MFEM_WARNING("Error in inverting element local matrix");
}
// Map to NURBS
DenseMatrix I;
el2.Project(el,tr,I);
// LSQ solve
// For higher order NURBS solving this non-square matrix causes issues.
// For Order <=4 the routine seems to work fine.
Vector vec(dof);
DenseMatrix mat(dof, dof);
I.Transpose();
I.Mult(elvect, vec);
MultAAt(I, mat);
if (!LinearSolve(mat, vec.GetData(), 1e-24))
{
mat.TestInversion();
MFEM_WARNING("Error in inverting element local matrix");
}
elvect = vec;
// Scale
elvect *= elwght;
// Add to global vector
x.AddElementVector(vdofs, elvect);
// Add to weight vector -- no need for an orientation
for (int i = 0; i < vdofs.Size(); i++)
{
vdofs[i] = FiniteElementSpace::DecodeDof(vdofs[i]);
}
Va.AddElementVector(vdofs, elwght);
}
}
}
void GridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
{
if (fes->GetTypicalFE()->GetRangeType() == mfem::FiniteElement::VECTOR)
{
Vector Va;
ProjectCoefficientElementL2_(vcoeff, *this, Va);
(*this) /= Va;
}
else
{
Array<int> vdofs(fes->GetNDofs());
Vector x, Va;
VectorComponentCoefficient coeff(vcoeff,
0); // 0 to ensure we have a valid object
for (int v = 0; v < VectorDim(); v++)
{
coeff.SetComponent(v);
ProjectCoefficientElementL2_(coeff, x, Va);
x /= Va;
fes->GetVDofs(v, vdofs);
SetSubVector(vdofs, x);
}
// Solve and get solution
*this = 0.0;
cg.Mult(b,*this);
}
}
+7 -71
View File
@@ -27,24 +27,6 @@
namespace mfem
{
/** This enumerated type describes the three main projection types:
- ELEMENT, assigns the degree of freedom per element, as specified in the
specific element
- GLOBAL_L2, solves a global L2 projection
- ELEMENT_L2, solves a element level L2 projection. Inter element
connectivity is dealt with similar as in:
Bezier-Projection : A unified approach for local projection and
quadrature-free refinement and coarsening of NURBS and T-splines with
particular application to isogeometric design and analysis
[CMAME (284) 2015 pg 55-105]
- DEFAULT, for NURBS spaces this is ELEMENT_L2, while for all other spaces
this ELEMENT.
Note 1: ELEMENT_L2 also works for non NURBS elements
Note 2: For NURBS elements the ELEMENT projection gives results without
over and undershoots. However, the gradient near the boundary does not
converge.*/
enum class ProjectType { DEFAULT, ELEMENT, GLOBAL_L2, ELEMENT_L2 };
/// Class for grid function - Vector with associated FE space.
class GridFunction : public Vector
{
@@ -84,17 +66,13 @@ protected:
degree of freedom. */
void ProjectDiscCoefficient(VectorCoefficient &coeff, Array<int> &dof_attr);
/** Helper function for ProjectCoefficientElementL2 */
void ProjectCoefficientElementL2_(Coefficient &coeff, Vector &sol, Vector &Va);
void ProjectCoefficientElementL2_(VectorCoefficient &vcoeff, Vector &sol,
Vector &Va);
/// Loading helper.
void LegacyNCReorder();
void Destroy();
public:
GridFunction() { fes = NULL; fec_owned = NULL; fes_sequence = 0; UseDevice(true); }
/// Copy constructor. The internal true-dof vector #t_vec is not copied.
@@ -106,10 +84,6 @@ public:
GridFunction(FiniteElementSpace *f) : Vector(f->GetVSize())
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
/// Same as above but specify the memory type
GridFunction(FiniteElementSpace *f, MemoryType mt) : Vector(f->GetVSize(), mt)
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
/// Construct a GridFunction using previously allocated array @a data.
/** The GridFunction does not assume ownership of @a data which is assumed to
be of size at least `f->GetVSize()`. Similar to the Vector constructor
@@ -446,30 +420,9 @@ public:
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection computation depends on the choice of the FiniteElementSpace
#fes. Note that this is usually interpolation at the degrees of freedom
in each element (not L2 projection). For elements without a projection
member function one could use ProjectCoefficientGlobalL2 instead.
NOTE: For parallel simulations with NURBS elements some dofs might
not be defined, if the evaluation point does not reside on this rank.
If that is the case it is defined on another rank, and the issue is
rectified with the appropriate communication, see in ParGridFunction.
*/
virtual void ProjectCoefficient(Coefficient &coeff,
ProjectType type = ProjectType::DEFAULT);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is a global L2 projection. This routine can be used a
fallback for elements without a projection member function.*/
virtual void ProjectCoefficientGlobalL2(Coefficient &coeff,
real_t rtol = 1e-12,
int iter = 1000);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is an element local L2 projection, with an appropriate
weighting for Dofs that are shared between elements. Inspired on
Bezier-Projection [CMAME (284) 2015 pg 55-105]
This routine can be used a fallback for elements without a projection
member function.*/
virtual void ProjectCoefficientElementL2(Coefficient &coeff);
in each element (not L2 projection). For NURBS spaces these degrees of
freedom are not available and L2 projection is resorted to as fallback. */
virtual void ProjectCoefficient(Coefficient &coeff);
/** @brief Project @a coeff Coefficient to @a this GridFunction, using one
element for each degree of freedom in @a dofs and nodal interpolation on
@@ -479,26 +432,9 @@ public:
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction. The
projection computation depends on the choice of the FiniteElementSpace
#fes. Note that this is usually interpolation at the degrees of freedom
in each element (not L2 projection). For elements without a projection
member function one could use ProjectCoefficientGlobalL2 instead.
NOTE: For parallel simulations with NURBS elements some dofs might
not be defined, if the evaluation point does not reside on this rank.
If that is the case it is defined on another rank, and the issue is
rectified with the appropriate communication, see in ParGridFunction.*/
virtual void ProjectCoefficient(VectorCoefficient &vcoeff,
ProjectType type = ProjectType::DEFAULT);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is a global L2 projection. This routine can be used a
fallback for elements without a projection member function.*/
virtual void ProjectCoefficientGlobalL2(VectorCoefficient &vcoeff,
real_t rtol = 1e-12,
int iter = 1000);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is a global L2 projection. This routine can be used a
fallback for elements without a projection member function.*/
virtual void ProjectCoefficientElementL2(VectorCoefficient &vcoeff);
in each element (not L2 projection). For NURBS spaces these degrees of
freedom are not available and L2 projection is resorted to as fallback. */
void ProjectCoefficient(VectorCoefficient &vcoeff);
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction, using
one element for each degree of freedom in @a dofs and nodal interpolation
+32 -59
View File
@@ -234,7 +234,7 @@ void FindPointsGSLIB::Setup(Mesh &m, const double bb_t, const double newt_tol,
}
void FindPointsGSLIB::FindPoints(const Vector &point_pos,
const int point_pos_ordering)
int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use FindPointsGSLIB::Setup before finding points.");
bool dev_mode = (point_pos.UseDevice() && Device::IsEnabled());
@@ -482,7 +482,7 @@ void FindPointsGSLIB::SetupDevice()
}
void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
const int point_pos_ordering)
int point_pos_ordering)
{
if (!DEV.setup_device)
{
@@ -505,13 +505,13 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
if (dim == 2)
{
FindPointsLocal2(point_pos, point_pos_ordering, gsl_code, gsl_elem,
gsl_ref, gsl_dist, points_cnt);
FindPointsLocal2(point_pos, point_pos_ordering, gsl_code, gsl_elem, gsl_ref,
gsl_dist, points_cnt);
}
else
{
FindPointsLocal3(point_pos, point_pos_ordering, gsl_code, gsl_elem,
gsl_ref, gsl_dist, points_cnt);
FindPointsLocal3(point_pos, point_pos_ordering, gsl_code, gsl_elem, gsl_ref,
gsl_dist, points_cnt);
}
// Sync from device to host
@@ -1085,7 +1085,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
#else
void FindPointsGSLIB::SetupDevice() {};
void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
const int point_pos_ordering) {};
int point_pos_ordering) {};
void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
Vector &field_out,
const int nel, const int ncomp,
@@ -1094,8 +1094,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
#endif
void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
const int point_pos_ordering,
const double bb_t,
int point_pos_ordering, const double bb_t,
const double newt_tol, const int npt_max)
{
if (!setupflag || (mesh != &m) )
@@ -1106,28 +1105,16 @@ void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
{
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering,
const int field_out_ordering)
{
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out, field_out_ordering);
}
void FindPointsGSLIB::Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
{
FindPoints(m, point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
@@ -1483,7 +1470,7 @@ void FindPointsGSLIB::SetupSplitMeshesAndIntegrationRules(const int order)
}
void FindPointsGSLIB::GetNodalValues(const GridFunction *gf_in,
Vector &node_vals) const
Vector &node_vals)
{
const GridFunction *nodes = gf_in;
const FiniteElementSpace *fes = nodes->FESpace();
@@ -1771,13 +1758,6 @@ void FindPointsGSLIB::MapRefPosAndElemIndices()
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out)
{
Interpolate(field_in, field_out, field_in.FESpace()->GetOrdering());
}
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering)
{
const int gf_order = field_in.FESpace()->GetMaxElementOrder(),
mesh_order = mesh->GetNodalFESpace()->GetMaxElementOrder();
@@ -1820,7 +1800,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
const int maxOrder = field_in.FESpace()->GetMaxElementOrder();
InterpolateOnDevice(node_vals, field_out, NE_split_total, ncomp,
maxOrder+1, field_out_ordering);
maxOrder+1, field_in.FESpace()->GetOrdering());
return;
#endif
}
@@ -1832,13 +1812,12 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
field_in.FESpace()->IsVariableOrder() ==
mesh->GetNodalFESpace()->IsVariableOrder())
{
InterpolateH1(field_in, field_out, field_out_ordering);
InterpolateH1(field_in, field_out);
return;
}
else
{
InterpolateGeneral(field_in, field_out,
field_out_ordering);
InterpolateGeneral(field_in, field_out);
if (!fec_l2 || avgtype == AvgType::NONE) { return; }
}
@@ -1882,11 +1861,11 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
if (gf_order_h1 == mesh_order) // basis is GaussLobatto by default
{
InterpolateH1(field_in_h1, field_out_l2, field_out_ordering);
InterpolateH1(field_in_h1, field_out_l2);
}
else
{
InterpolateGeneral(field_in_h1, field_out_l2, field_out_ordering);
InterpolateGeneral(field_in_h1, field_out_l2);
}
// Copy interpolated values for the points on element border
@@ -1894,7 +1873,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
{
for (int i = 0; i < indl2.Size(); i++)
{
int idx = field_out_ordering == Ordering::byNODES?
int idx = field_in_h1.FESpace()->GetOrdering() == Ordering::byNODES?
indl2[i] + j*points_cnt:
indl2[i]*ncomp + j;
field_out(idx) = field_out_l2(idx);
@@ -1904,8 +1883,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
}
void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering)
Vector &field_out)
{
FiniteElementSpace ind_fes(mesh, field_in.FESpace()->FEColl());
if (field_in.FESpace()->IsVariableOrder())
@@ -1935,8 +1913,7 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
dataptrout = i*points_cnt;
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
{
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin,
points_fld);
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
}
else
{
@@ -1968,7 +1945,7 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
(gslib::findpts_data_3 *)this->fdataD);
}
}
if (field_out_ordering == Ordering::byVDIM)
if (field_in.FESpace()->GetOrdering() == Ordering::byVDIM)
{
Vector field_out_temp = field_out;
for (int i = 0; i < ncomp; i++)
@@ -1982,8 +1959,7 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
}
void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering)
Vector &field_out)
{
int ncomp = field_in.VectorDim(),
nptorig = points_cnt,
@@ -2003,7 +1979,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
if (dim == 3) { ip.z = gsl_mfem_ref(index*dim + 2); }
Vector localval(ncomp);
field_in.GetVectorValue(gsl_mfem_elem[index], ip, localval);
if (field_out_ordering == Ordering::byNODES)
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
{
for (int i = 0; i < ncomp; i++)
{
@@ -2038,10 +2014,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
for (int index = 0; index < npt; index++)
{
if (gsl_code[index] == 2) { continue; }
for (int d = 0; d < dim; ++d)
{
pt->r[d]= gsl_mfem_ref(index*dim + d);
}
for (int d = 0; d < dim; ++d) { pt->r[d]= gsl_mfem_ref(index*dim + d); }
pt->index = index;
pt->proc = gsl_proc[index];
pt->el = gsl_mfem_elem[index];
@@ -2131,7 +2104,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
sdpt = (struct send_pt *)sendpt->ptr;
for (int index = 0; index < static_cast<int>(sendpt->n); index++)
{
int idx = field_out_ordering == Ordering::byNODES ?
int idx = field_in.FESpace()->GetOrdering() == Ordering::byNODES ?
sdpt->index + j*nptorig :
sdpt->index*ncomp + j;
field_out(idx) = sdpt->ival;
@@ -2273,7 +2246,7 @@ void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
}
}
void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb) const
void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb)
{
MFEM_VERIFY(setupflag, "Call FindPointsGSLIB::Setup method first");
auto *findptsData3 = (gslib::findpts_data_3 *)this->fdataD;
@@ -2344,7 +2317,7 @@ void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb) const
}
void FindPointsGSLIB::GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV) const
Vector &obbV)
{
MFEM_VERIFY(setupflag, "Call FindPointsGSLIB::Setup method first");
auto *findptsData3 = (gslib::findpts_data_3 *)this->fdataD;
@@ -2529,8 +2502,8 @@ void OversetFindPointsGSLIB::Setup(Mesh &m, const int meshid,
}
void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
const Array<unsigned int> &point_id,
const int point_pos_ordering)
Array<unsigned int> &point_id,
int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use OversetFindPointsGSLIB::Setup before "
"finding points.");
@@ -2609,10 +2582,10 @@ void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
}
void OversetFindPointsGSLIB::Interpolate(const Vector &point_pos,
const Array<unsigned int> &point_id,
Array<unsigned int> &point_id,
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
int point_pos_ordering)
{
FindPoints(point_pos, point_id, point_pos_ordering);
Interpolate(field_in, field_out);
+15 -32
View File
@@ -119,13 +119,11 @@ protected:
} DEV;
/// Use GSLIB for communication and interpolation
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out);
/// Uses GSLIB Crystal Router for communication followed by MFEM's
/// interpolation functions
virtual void InterpolateGeneral(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering);
Vector &field_out);
/// Since GSLIB is designed to work with quads/hexes, we split every
/// triangle/tet/prism/pyramid element into quads/hexes.
@@ -142,7 +140,7 @@ protected:
virtual void SetupSplitMeshesAndIntegrationRules(const int order);
/// Get GridFunction value at the points expected by GSLIB.
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals) const;
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals);
/// Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For simplices,
/// find the original element number (that was split into micro quads/hexes)
@@ -184,7 +182,7 @@ protected:
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering. */
void FindPointsOnDevice(const Vector &point_pos,
const int point_pos_ordering = Ordering::byNODES);
int point_pos_ordering = Ordering::byNODES);
/** Interpolation of field values at prescribed reference space positions.
@param[in] field_in_evec E-vector of grid function to be interpolated.
@@ -255,15 +253,10 @@ public:
#gsl_dist Distance between the sought and the found point
in physical space. */
void FindPoints(const Vector &point_pos,
const int point_pos_ordering = Ordering::byNODES);
/// Convenience function when point positions are in a ParticleVector
void FindPoints(const ParticleVector &point_pos)
{
FindPoints(point_pos, point_pos.GetOrdering());
}
int point_pos_ordering = Ordering::byNODES);
/// Setup FindPoints and search positions
void FindPoints(Mesh &m, const Vector &point_pos,
const int point_pos_ordering = Ordering::byNODES,
int point_pos_ordering = Ordering::byNODES,
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
@@ -273,28 +266,20 @@ public:
\p field_in is in H1 and in the same space as the
mesh that was given to Setup().
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value.
The output ordering is determined from field_in.*/
the value is set to #default_interp_value. */
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
/// Interpolation of field values, with output ordering specification.
virtual void Interpolate(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
the output values in \p field_out corresponds to the ordering used
in the input GridFunction \p field_in. */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering = Ordering::byNODES);
/// Search positions and interpolate with given point and output ordering.
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out, const int point_pos_ordering,
const int field_out_ordering);
int point_pos_ordering = Ordering::byNODES);
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
or byVDIM) of the output values in \p field_out corresponds to the
ordering used in the input GridFunction \p field_in. */
void Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
const int point_pos_ordering = Ordering::byNODES);
int point_pos_ordering = Ordering::byNODES);
/// Average type to be used for L2 functions in-case a point is located at
/// an element boundary where the function might be multi-valued.
@@ -391,7 +376,7 @@ public:
/// The size of the returned vector is (nel x nverts x dim), where nel is the
/// number of elements (after splitting for simplcies), nverts is number of
/// vertices (4 in 2D, 8 in 3D), and dim is the spatial dimension.
void GetAxisAlignedBoundingBoxes(Vector &aabb) const;
void GetAxisAlignedBoundingBoxes(Vector &aabb);
/// Return the oriented bounding boxes (OBB) computed during \ref Setup.
/// Each OBB is represented using the inverse transformation (A^{-1}) and
@@ -401,8 +386,7 @@ public:
/// size (dim x dim x nel), and the OBB centers are returned in \p obbC,
/// a vector of size (nel x dim). The vertices of the OBBs are returned in
/// \p obbV, a vector of size (nel x nverts x dim) .
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV) const;
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC, Vector &obbV);
};
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
@@ -462,14 +446,13 @@ public:
byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) */
void FindPoints(const Vector &point_pos,
const Array<unsigned int> &point_id,
const int point_pos_ordering = Ordering::byNODES);
Array<unsigned int> &point_id,
int point_pos_ordering = Ordering::byNODES);
/** Search positions and interpolate */
void Interpolate(const Vector &point_pos,
const Array<unsigned int> &point_id,
void Interpolate(const Vector &point_pos, Array<unsigned int> &point_id,
const GridFunction &field_in, Vector &field_out,
const int point_pos_ordering = Ordering::byNODES);
int point_pos_ordering = Ordering::byNODES);
using FindPointsGSLIB::Interpolate;
};
+1 -7
View File
@@ -789,6 +789,7 @@ void Hybridization::ComputeH()
}
else
{
// TODO: add ones on the diagonal of zero rows
V->Finalize();
Array<HYPRE_BigInt> V_J(V->NumNonZeroElems());
MFEM_ASSERT(c_pfes, "");
@@ -822,13 +823,6 @@ void Hybridization::ComputeH()
MFEM_VERIFY(pH.Type() != Operator::PETSC_MATIS, "To be implemented");
pH.MakePtAP(plpH, pP);
delete lpH;
HypreParMatrix *hH = pH.As<HypreParMatrix>();
MFEM_ASSERT(hH, "");
SparseMatrix H_diag;
hH->GetDiag(H_diag);
H_diag.SetDiagIdentity();
}
#endif
}
+273 -453
View File
File diff suppressed because it is too large Load Diff
+2 -20
View File
@@ -14,11 +14,8 @@
#include "../config/config.hpp"
#include "../general/array.hpp"
#include "../linalg/operator.hpp"
#include "../linalg/vector.hpp"
#include <memory>
namespace mfem
{
@@ -48,30 +45,15 @@ protected:
Array<int> hat_dof_gather_map;
Array<DofType> hat_dof_marker;
Array<int> el_to_face; ///< Element to face connectivity.
Array<int> el_face_offsets; ///< Per-element offsets into @a el_to_face.
Array<int> face_to_el; ///< Face-to-element connectivity.
Array<int> face_face_offsets; ///< Face-to-face offsets.
int n_el_face; ///< Total number of element-to-face connections.
int n_face_face; ///< Total number of face-to-face connections.
Array<int> el_to_face;
Array<int> face_to_el;
Vector Ct_mat; ///< Constraint matrix (transposed) stored element-wise.
/// @name For parallel non-conforming meshes
///@{
std::unique_ptr<Operator> P_pc; ///< Partially conforming prolongation.
std::unique_ptr<Operator> P_nbr; ///< Face-neighbor prolongation.
///@}
Array<int> idofs, bdofs;
Vector Ahat, Ahat_ii, Ahat_ib, Ahat_bi, Ahat_bb;
Array<int> Ahat_ii_piv, Ahat_bb_piv;
/// Return the (partially) conforming prolongation on the constraint space.
const Operator &GetProlongation() const;
public:
/// Construct the constraint matrix.
void ConstructC();
+5 -8
View File
@@ -1004,16 +1004,13 @@ inline void SmemPADiffusionApply3D(const int NE,
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
MFEM_VERIFY(Q1D <= max_q1d, "");
const auto b = Reshape(b_.Read(), Q1D, D1D);
const auto g = Reshape(g_.Read(), Q1D, D1D);
const auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
const auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto b = Reshape(b_.Read(), Q1D, D1D);
auto g = Reshape(g_.Read(), Q1D, D1D);
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_VERIFY(D1D <= Q1D, "THREAD_DIRECT requires D1D <= Q1D");
mfem::forall_3D<T_Q1D*T_Q1D*T_Q1D>(NE,
Q1D, Q1D, Q1D,
[=] MFEM_HOST_DEVICE (int e)
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+6 -6
View File
@@ -1133,11 +1133,11 @@ inline void SmemPAMassApply3D(const int NE,
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
MFEM_VERIFY(Q1D <= max_q1d, "");
const auto b = b_.Read();
const auto d = d_.Read();
const auto x = x_.Read();
auto b = b_.Read();
auto d = d_.Read();
auto x = x_.Read();
auto y = y_.ReadWrite();
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
{
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
});
@@ -1156,8 +1156,8 @@ inline void EAMassAssemble1D(const int NE,
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
const auto B = Reshape(basis.Read(), Q1D, D1D);
const auto D = Reshape(padata.Read(), Q1D, NE);
auto B = Reshape(basis.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, NE);
auto M = Reshape(add ? eadata.ReadWrite() : eadata.Write(), D1D, D1D, NE);
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
{
+20 -98
View File
@@ -28,7 +28,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
const FaceType ftype = FaceType::Interior;
const int nf = mesh.GetNFbyType(ftype);
const Geometry::Type geom = mesh.GetTypicalFaceGeometry();
const Geometry::Type geom = mesh.GetFaceGeometry(0);
const int trial_order = trial_fes.GetMaxElementOrder();
const int test_order = test_fes.GetMaxElementOrder();
const int qorder = test_order + trial_order - 1;
@@ -47,7 +47,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
});
}
const FiniteElement &trial_face_el = *trial_fes.GetTypicalTraceElement();
const FiniteElement &trial_face_el = *trial_fes.GetFaceElement(0);
const auto maps = &trial_face_el.GetDofToQuad(ir, DofToQuad::TENSOR);
const int ndof_face = trial_face_el.GetDof();
@@ -72,7 +72,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
MFEM_ABORT("Unknown kernel.");
}
const FiniteElement &test_el = *test_fes.GetTypicalFE();
const FiniteElement &test_el = *test_fes.GetFE(0);
const int n_faces_per_el = 2*dim; // assuming tensor product
// Get all the local face maps (mapping from lexicographic face index to
// lexicographic volume index, depending on the local face index).
@@ -90,10 +90,10 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
Array<int> face_info(nf * 4);
{
int fidx = 0;
for (int f = 0; f < mesh.GetNumFacesWithGhost(); ++f)
for (int f = 0; f < mesh.GetNumFaces(); ++f)
{
Mesh::FaceInformation finfo = mesh.GetFaceInformation(f);
if (!finfo.IsInterior() || finfo.IsNonconformingCoarse()) { continue; }
if (!finfo.IsInterior()) { continue; }
face_info[0 + fidx*4] = finfo.element[0].local_face_id;
face_info[1 + fidx*4] = finfo.element[0].orientation;
face_info[2 + fidx*4] = finfo.element[1].local_face_id;
@@ -114,7 +114,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
else
{
d_emat = emat.Write();
emat = 0.0; // Will execute on device, since Write() sets the device flag
mfem::forall(emat.Size(), [=] MFEM_HOST_DEVICE (int i) { d_emat[i] = 0.0; });
}
const auto face_mats = Reshape(mass_emat.Read(), ndof_face, ndof_face, nf);
@@ -133,104 +133,26 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
}
};
auto permute_face_2 = [=] MFEM_HOST_DEVICE(int local_face_1, int local_face_2,
int orient, int size1d, int index)
mfem::forall_3D(nf, ndof_face, ndof_face, 2, [=] MFEM_HOST_DEVICE (int f)
{
if (dim == 2)
MFEM_FOREACH_THREAD(el_i, z, 2)
{
return internal::PermuteFace2D(local_face_1, local_face_2, orient,
size1d, index);
}
else // dim == 3
{
return internal::PermuteFace3D(local_face_1, local_face_2, orient,
size1d, index);
}
};
if (mesh.Conforming())
{
mfem::forall_3D(nf, ndof_face, ndof_face, 2, [=] MFEM_HOST_DEVICE (int f)
{
MFEM_FOREACH_THREAD(el_i, z, 2)
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
// Loop over face indices in "native ordering"
MFEM_FOREACH_THREAD(i_lex, x, ndof_face)
{
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
// Loop over face indices in "native ordering"
MFEM_FOREACH_THREAD(i_lex, x, ndof_face)
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
MFEM_FOREACH_THREAD(j, y, ndof_face)
{
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
MFEM_FOREACH_THREAD(j, y, ndof_face)
{
el_mats(i, j, el_i, f) += face_mats(i_face, j, f);
}
el_mats(i, j, el_i, f) += face_mats(i_face, j, f);
}
}
});
}
else
{
const InterpolationManager &interp =
test_fes.GetInterpolationManager(ElementDofOrdering::LEXICOGRAPHIC, ftype);
auto interp_configs = interp.GetFaceInterpConfig().Read();
const int nc_size = interp.GetNumInterpolators();
auto d_interp = Reshape(interp.GetInterpolators().Read(),
ndof_face, ndof_face, nc_size);
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
{
const InterpConfig conf = interp_configs[f];
const int master_side = conf.master_side;
const int interp_index = conf.index;
const int lf_0 = d_face_info(0, 0, f);
for (int el_i = 0; el_i < 2; ++el_i)
{
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
for (int j = 0; j < ndof_face; j++)
{
for (int i_lex = 0; i_lex < ndof_face; i_lex++)
{
real_t val = 0.0;
if (conf.is_non_conforming && el_i == master_side)
{
// Interpolate from el_i (coarse element) to the fine face.
// The mapping is given by d_interp, which uses indices
// relative to element 0.
// i0 is lexicographic relative to element 0
const int i0 = permute_face_2(lf_i, lf_0, orient, d1d, i_lex);
// k0 is lexicographic relative to element 0
for (int k0 = 0; k0 < ndof_face; k0++)
{
// k is relative to the face itself
const int k = permute_face(lf_0, orient, d1d, k0);
val += d_interp(k0, i0, interp_index)
* face_mats(k, j, f);
}
}
else
{
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
val = face_mats(i_face, j, f);
}
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
el_mats(i, j, el_i, f) += val;
}
}
}
});
}
}
});
}
}
+2 -2
View File
@@ -54,7 +54,7 @@ void SmemPAVectorDiffusionApply2D(const int NE,
const auto XE = Reshape(x.Read(), D1D, D1D, SDIM, NE);
auto YE = Reshape(y.ReadWrite(), D1D, D1D, SDIM, NE);
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -120,7 +120,7 @@ void SmemPAVectorDiffusionApply3D(const int NE,
const auto XE = Reshape(x.Read(), D1D, D1D, D1D, SDIM, NE);
auto YE = Reshape(y.ReadWrite(), D1D, D1D, D1D, SDIM, NE);
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
+2 -2
View File
@@ -51,7 +51,7 @@ void SmemPAVectorMassApply2D(const int NE,
const auto X = Reshape(x.Read(), D1D, D1D, VDIM, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, VDIM, NE);
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -119,7 +119,7 @@ void SmemPAVectorMassApply3D(const int NE,
const auto X = Reshape(x.Read(), D1D, D1D, D1D, VDIM, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, VDIM, NE);
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
+31 -3
View File
@@ -14,7 +14,6 @@
#include "../config/config.hpp"
#include "kernel_reporter.hpp"
#include "../general/hash_util.hpp"
#include <unordered_map>
#include <tuple>
#include <type_traits>
@@ -87,6 +86,35 @@ namespace mfem
} \
}
/// @brief Hashes variadic packs for which each type contained in the variadic
/// pack has a specialization of `std::hash` available.
///
/// For example, packs containing int, bool, enum values, etc.
template<typename ...KernelParameters>
struct KernelDispatchKeyHash
{
private:
template<int N>
size_t operator()(std::tuple<KernelParameters...> value) const { return 0; }
// The hashing formula here is taken directly from the Boost library, with
// the magic number 0x9e3779b9 chosen to minimize hashing collisions.
template<std::size_t N, typename THead, typename... TTail>
size_t operator()(std::tuple<KernelParameters...> value) const
{
constexpr int Index = N - sizeof...(TTail) - 1;
auto lhs_hash = std::hash<THead>()(std::get<Index>(value));
auto rhs_hash = operator()<N, TTail...>(value);
return lhs_hash^(rhs_hash + 0x9e3779b9 + (lhs_hash<<6) + (lhs_hash>>2));
}
public:
/// Returns the hash of the given @a value.
size_t operator()(std::tuple<KernelParameters...> value) const
{
return operator()<sizeof...(KernelParameters),KernelParameters...>(value);
}
};
namespace internal { template<typename... Types> struct KernelTypeList { }; }
template<typename... T> class KernelDispatchTable { };
@@ -100,8 +128,8 @@ class KernelDispatchTable<Kernels,
internal::KernelTypeList<Params...>,
internal::KernelTypeList<OptParams...>>
{
using TableType =
std::unordered_map<std::tuple<Params...>, Signature, TupleHasher>;
using TableType = std::unordered_map<std::tuple<Params...>,
Signature, KernelDispatchKeyHash<Params...>>;
TableType table;
/// @brief Call function @a f with arguments @a args (perfect forwaring).
+2 -16
View File
@@ -23,8 +23,6 @@ class BatchedLOR_DG : BatchedLORKernel
{
IntegrationRule ir_face; ///< Collocated Gauss-Lobatto face quadrature rule.
real_t kappa; ///< DG penalty parameter.
bool has_bdr_integ; ///< Is there a boundary integrator?
const Array<int> *bdr_markers; ///< Boundary integrator markers.
public:
template <int ORDER, int SDIM> void Assemble2D();
template <int ORDER> void Assemble3D();
@@ -40,7 +38,8 @@ public:
ProjectLORCoefficient<MassIntegrator>(a, c1);
ProjectLORCoefficient<DiffusionIntegrator>(a, c2);
if (auto *integ = GetInteriorFaceIntegrator<DGDiffusionIntegrator>(a))
auto *integ = GetInteriorFaceIntegrator<DGDiffusionIntegrator>(a);
if (integ)
{
kappa = integ->GetPenaltyParameter();
}
@@ -48,19 +47,6 @@ public:
{
kappa = 0.0;
}
has_bdr_integ = false;
auto *bdr_face_integs = a.GetBFBFI();
for (int i = 0; i < bdr_face_integs->Size(); ++i)
{
if (auto *integ = dynamic_cast<DGDiffusionIntegrator*>((*bdr_face_integs)[i]))
{
kappa = integ->GetPenaltyParameter();
bdr_markers = (*a.GetBFBFI_Marker())[i];
has_bdr_integ = true;
break;
}
}
}
/// @brief Compute and return the face info array.
-18
View File
@@ -22,13 +22,9 @@ namespace mfem
Array<int> BatchedLOR_DG::GetFaceInfo() const
{
Mesh &mesh = *fes_ho.GetMesh();
const Array<int> &bdr_face_attrs = mesh.GetBdrFaceAttributes();
const int nf = mesh.GetNumFaces();
Array<int> face_info(nf * 6); // (e0, f0, o0, e1, f1, o1)
auto h_face_info = Reshape(face_info.HostWrite(), 6, nf);
int bdr_face_counter = 0;
for (int f = 0; f < nf; ++f)
{
auto finfo = mesh.GetFaceInformation(f);
@@ -47,19 +43,6 @@ Array<int> BatchedLOR_DG::GetFaceInfo() const
h_face_info(4, f) = -1;
h_face_info(5, f) = -1;
}
if (finfo.IsBoundary())
{
// Check if Neumann boundary; skip these when adding boundary penalties
const int bdr_attr = bdr_face_attrs[bdr_face_counter];
if (!has_bdr_integ || (bdr_markers && !(*bdr_markers)[bdr_attr - 1]))
{
h_face_info(0, f) = -1;
h_face_info(1, f) = -1;
h_face_info(2, f) = -1;
}
bdr_face_counter += 1;
}
}
return face_info;
}
@@ -161,7 +144,6 @@ void BatchedLOR_DG::AssembleFaceTerms()
{
const int f_0 = d_face_info(1, f);
const int f_1 = d_face_info(4, f);
if (f_0 < 0) { return; } // Skip Neumann boundary faces
const int nsides = (f_1 >= 0) ? 2 : 1;
for (int el_i = 0; el_i < nsides; ++el_i)
{
+4 -1
View File
@@ -78,7 +78,10 @@ template <int Dim>
void BuildBoxes(const Mesh &mesh,
std::vector<::moonolith::AABB<Dim, double>> &element_boxes)
{
MFEM_ASSERT(mesh.Dimension() == Dim, "Mesh and box dimensions mismatched");
#ifndef NDEBUG
const int dim = mesh.Dimension();
assert(dim == Dim);
#endif
element_boxes.resize(mesh.GetNE());
DenseMatrix pts;
+3 -9
View File
@@ -488,16 +488,10 @@ void ParBilinearForm::FormLinearSystem(
R.Mult(x, true_X);
FormSystemMatrix(ess_tdof_list, A);
std::unique_ptr<ConstrainedOperator> A_constrained([&]()
{
Operator *op;
Operator::FormSystemOperator(ess_tdof_list, op);
return dynamic_cast<ConstrainedOperator*>(op);
}());
MFEM_ASSERT(A_constrained != nullptr, "");
ConstrainedOperator *A_constrained;
Operator::FormConstrainedSystemOperator(ess_tdof_list, A_constrained);
A_constrained->EliminateRHS(true_X, true_B);
delete A_constrained;
R.MultTranspose(true_B, b);
hybridization->ReduceRHS(true_B, B);
X.SetSize(B.Size());
+9 -8
View File
@@ -646,38 +646,39 @@ const FaceRestriction *ParFiniteElementSpace::GetFaceRestriction(
auto itr = L2F.find(key);
if (itr != L2F.end())
{
return itr->second.get();
return itr->second;
}
else
{
std::unique_ptr<FaceRestriction> res;
FaceRestriction *res;
if (is_dg_space)
{
if (Conforming())
{
res.reset(new ParL2FaceRestriction(*this, f_ordering, type, m));
res = new ParL2FaceRestriction(*this, f_ordering, type, m);
}
else
{
res.reset(new ParNCL2FaceRestriction(*this, f_ordering, type, m));
res = new ParNCL2FaceRestriction(*this, f_ordering, type, m);
}
}
else if (dynamic_cast<const DG_Interface_FECollection*>(fec))
{
res.reset(new L2InterfaceFaceRestriction(*this, f_ordering, type));
res = new L2InterfaceFaceRestriction(*this, f_ordering, type);
}
else
{
if (Conforming())
{
res.reset(new ConformingFaceRestriction(*this, f_ordering, type));
res = new ConformingFaceRestriction(*this, f_ordering, type);
}
else
{
res.reset(new ParNCH1FaceRestriction(*this, f_ordering, type));
res = new ParNCH1FaceRestriction(*this, f_ordering, type);
}
}
return L2F.emplace(key, std::move(res)).first->second.get();
L2F[key] = res;
return res;
}
}
-2
View File
@@ -483,8 +483,6 @@ public:
const FiniteElement *GetFaceNbrFaceFE(int i) const;
const Array<HYPRE_BigInt> &GetFaceNbrGlobalDofMapArray() { return face_nbr_glob_dof_map; }
const HYPRE_BigInt *GetFaceNbrGlobalDofMap() { return face_nbr_glob_dof_map; }
const Array<HYPRE_BigInt> &GetFaceNbrGlobalDofMapArray() const
{ return face_nbr_glob_dof_map; }
ElementTransformation *GetFaceNbrElementTransformation(int i) const
{ return pmesh->GetFaceNbrElementTransformation(i); }
+2 -152
View File
@@ -543,22 +543,13 @@ void ParGridFunction::GetElementDofValues(int el, Vector &dof_vals) const
}
}
void ParGridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
void ParGridFunction::ProjectCoefficient(Coefficient &coeff)
{
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
if (delta_c == NULL)
{
(*this) = std::numeric_limits<real_t>::min();
GridFunction::ProjectCoefficient(coeff,type);
// Accumulate for all vdofs.
if (pfes->GetNURBSext())
{
GroupCommunicator &gcomm = pfes->GroupComm();
gcomm.Reduce<real_t>(data, GroupCommunicator::Max);
gcomm.Bcast<real_t>(data);
}
GridFunction::ProjectCoefficient(coeff);
}
else
{
@@ -574,147 +565,6 @@ void ParGridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
}
}
void ParGridFunction::ProjectCoefficient(VectorCoefficient &vcoeff,
ProjectType type)
{
GridFunction::ProjectCoefficient(vcoeff, type);
// Accumulate for all vdofs.
if (pfes->GetNURBSext())
{
GroupCommunicator &gcomm = pfes->GroupComm();
gcomm.Reduce<real_t>(data, GroupCommunicator::Max);
gcomm.Bcast<real_t>(data);
}
}
void ParGridFunction::ProjectCoefficientGlobalL2(Coefficient &coeff,
real_t rtol,
int iter)
{
// Define and assemble linear form
ParLinearForm b(pfes);
b.AddDomainIntegrator(new DomainLFIntegrator(coeff));
b.Assemble();
// Define and assemble bilinear form
ParBilinearForm a(pfes);
a.AddDomainIntegrator(new MassIntegrator());
a.Assemble();
// Configure solver
OperatorPtr A;
Vector B, X, x(*this);
Array<int> ess_tdof_list;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
Solver *prec = new HypreBoomerAMG;
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(rtol);
cg.SetMaxIter(iter);
cg.SetPrintLevel(0);
cg.SetPreconditioner(*prec);
cg.SetOperator(*A);
cg.Mult(B, X);
a.RecoverFEMSolution(X, b, x);
delete prec;
}
void ParGridFunction::ProjectCoefficientElementL2(Coefficient &coeff)
{
Vector Va;
ProjectCoefficientElementL2_(coeff, *this, Va);
GroupCommunicator &gcomm = pfes->GroupComm();
gcomm.Reduce<real_t>(GetData(), GroupCommunicator::Sum);
gcomm.Bcast<real_t>(GetData());
gcomm.Reduce<real_t>(Va.GetData(), GroupCommunicator::Sum);
gcomm.Bcast<real_t>(Va.GetData());
(*this)/=Va;
}
void ParGridFunction::ProjectCoefficientGlobalL2(VectorCoefficient &vcoeff,
real_t rtol, int iter)
{
// Define and assemble linear form
ParLinearForm b(pfes);
ParBilinearForm a(pfes);
// Dimension argument to GetRangeType is arbitrary to be 3, could also be 2.
if (fes->FEColl()->GetRangeType(3) == mfem::FiniteElement::VECTOR)
{
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(vcoeff));
a.AddDomainIntegrator(new VectorFEMassIntegrator());
}
else
{
b.AddDomainIntegrator(new VectorDomainLFIntegrator(vcoeff));
a.AddDomainIntegrator(new VectorMassIntegrator());
}
b.Assemble();
a.Assemble();
// Configure solver
OperatorPtr A;
Vector B, X, x(*this);
x = 0.0;
Array<int> ess_tdof_list;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
Solver *prec = new HypreBoomerAMG;
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(rtol);
cg.SetMaxIter(iter);
cg.SetPrintLevel(0);
cg.SetPreconditioner(*prec);
cg.SetOperator(*A);
cg.Mult(B, X);
a.RecoverFEMSolution(X, b, x);
x.Print();
delete prec;
}
void ParGridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
{
if (fes->GetTypicalFE()->GetRangeType() == mfem::FiniteElement::VECTOR)
{
Vector Va;
ProjectCoefficientElementL2_(vcoeff, *this, Va);
GroupCommunicator &gcomm = pfes->GroupComm();
gcomm.Reduce<real_t>(GetData(), GroupCommunicator::Sum);
gcomm.Bcast<real_t>(GetData());
gcomm.Reduce<real_t>(Va.GetData(), GroupCommunicator::Sum);
gcomm.Bcast<real_t>(Va.GetData());
(*this)/=Va;
}
else
{
Array<int> vdofs(fes->GetNDofs());
Vector x, Va, gVa(Size());
VectorComponentCoefficient coeff(vcoeff,0);
*this = 0.0;
gVa = 0.0;
for (int v = 0; v < VectorDim(); v++)
{
coeff.SetComponent(v);
ProjectCoefficientElementL2_(coeff, x, Va);
fes->GetVDofs(v, vdofs);
SetSubVector(vdofs, x);
gVa.SetSubVector(vdofs, Va);
}
GroupCommunicator &gcomm = pfes->GroupComm();
gcomm.Reduce<real_t>(GetData(), GroupCommunicator::Sum);
gcomm.Bcast<real_t>(GetData());
gcomm.Reduce<real_t>(gVa.GetData(), GroupCommunicator::Sum);
gcomm.Bcast<real_t>(gVa.GetData());
*this /= gVa;
}
}
void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
{
// local maximal element attribute for each dof
+1 -21
View File
@@ -72,10 +72,6 @@ public:
ParGridFunction(ParFiniteElementSpace *pf) : GridFunction(pf), pfes(pf) { }
/// Same as above but specify the device memory type
ParGridFunction(ParFiniteElementSpace *pf, MemoryType mt) :
GridFunction(pf, mt), pfes(pf) { }
/// Construct a ParGridFunction using previously allocated array @a data.
/** The ParGridFunction does not assume ownership of @a data which is assumed
to be of size at least `pf->GetVSize()`. Similar to the GridFunction and
@@ -261,11 +257,7 @@ public:
void GetElementDofValues(int el, Vector &dof_vals) const override;
using GridFunction::ProjectCoefficient;
void ProjectCoefficient(Coefficient &coeff,
ProjectType type = ProjectType::DEFAULT) override;
void ProjectCoefficient(VectorCoefficient &vcoeff,
ProjectType type = ProjectType::DEFAULT) override;
void ProjectCoefficient(Coefficient &coeff) override;
using GridFunction::ProjectDiscCoefficient;
/** @brief Project a discontinuous vector coefficient as a grid function on
@@ -290,18 +282,6 @@ public:
void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
const Array<int> &bdr_attr) override;
void ProjectCoefficientGlobalL2(Coefficient &coeff,
real_t rtol = 1e-12,
int iter = 1000) override;
void ProjectCoefficientElementL2(Coefficient &coeff) override;
void ProjectCoefficientGlobalL2(VectorCoefficient &vcoeff,
real_t rtol = 1e-12,
int iter = 1000) override;
void ProjectCoefficientElementL2(VectorCoefficient &vcoeff) override;
/// @brief Returns ||u_ex - u_h||_L1 in parallel for H1 or L2 elements
///
/// @see GridFunction::ComputeL1Error(Coefficient *exsol[],
+7
View File
@@ -994,6 +994,7 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
if ( face.IsConforming() )
{
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
SetFaceDofsScatterIndices1(face,f_ind);
if ( m==L2FaceValues::DoubleValued )
{
@@ -1009,6 +1010,7 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
}
else // Non-conforming face
{
interpolations.RegisterFaceCoarseToFineInterpolation(face,f_ind);
SetFaceDofsScatterIndices1(face,f_ind);
if ( m==L2FaceValues::DoubleValued )
{
@@ -1026,6 +1028,7 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
}
else if (type==FaceType::Boundary && face.IsBoundary())
{
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
SetFaceDofsScatterIndices1(face,f_ind);
if ( m==L2FaceValues::DoubleValued )
{
@@ -1043,6 +1046,10 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
gather_offsets[i] += gather_offsets[i - 1];
}
// Transform the interpolation matrix map into a contiguous memory structure.
interpolations.LinearizeInterpolatorMapIntoVector();
interpolations.InitializeNCInterpConfig();
}
void ParNCL2FaceRestriction::ComputeGatherIndices()
+6 -2
View File
@@ -326,7 +326,9 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows. */
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
void FillI(SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
@@ -362,7 +364,9 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows. */
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
void FillJAndData(const Vector &fea_data,
SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
+1 -7
View File
@@ -50,13 +50,7 @@ QuadratureInterpolator::DetKernelType
QuadratureInterpolator::DetKernels::Fallback(
int DIM, int SDIM, int D1D, int Q1D)
{
if (DIM == 1)
{
if (SDIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (SDIM == 2) { return internal::quadrature_interpolator::Det1DSurface<0,0,2>; }
else if (SDIM == 3) { return internal::quadrature_interpolator::Det1DSurface<0,0,3>; }
else { MFEM_ABORT(""); }
}
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D; }
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface; }
else if (DIM == 3)
+1 -51
View File
@@ -56,50 +56,6 @@ inline void Det1D(const int NE,
});
}
template<int T_D1D = 0, int T_Q1D = 0, int T_SDIM = 3>
inline void Det1DSurface(const int NE,
const real_t *b,
const real_t *g,
const real_t *x,
real_t *y,
const int d1d = 0,
const int q1d = 0,
Vector *d_buff = nullptr)
{
MFEM_CONTRACT_VAR(b);
MFEM_CONTRACT_VAR(d_buff);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
const auto G = Reshape(g, Q1D, D1D);
const auto X = Reshape(x, D1D, T_SDIM, NE);
auto Y = Reshape(y, Q1D, NE);
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
{
for (int q = 0; q < Q1D; q++)
{
real_t grad[T_SDIM];
for (int s = 0; s < T_SDIM; s++) { grad[s] = 0.0; }
for (int d = 0; d < D1D; d++)
{
const real_t gval = G(q, d);
for (int s = 0; s < T_SDIM; s++)
{
grad[s] += gval * X(d, s, e);
}
}
real_t norm2 = 0.0;
for (int s = 0; s < T_SDIM; s++)
{
norm2 += grad[s] * grad[s];
}
Y(q, e) = std::sqrt(norm2);
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
inline void Det2D(const int NE,
const real_t *b,
@@ -334,13 +290,7 @@ template<int DIM, int SDIM, int D1D, int Q1D>
QuadratureInterpolator::DetKernelType
QuadratureInterpolator::DetKernels::Kernel()
{
if (DIM == 1)
{
if (SDIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (SDIM == 2) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 2>; }
else if (SDIM == 3) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 3>; }
else { MFEM_ABORT(""); }
}
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
+1 -2
View File
@@ -542,8 +542,7 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
}
MFEM_ASSERT(!(eval_flags & DETERMINANTS) || dim == vdim ||
(dim == 2 && vdim == 3) || (dim == 1 && vdim == 2) ||
(dim == 1 && vdim == 3), "Invalid dimensions for determinants.");
(dim == 2 && vdim == 3), "Invalid dimensions for determinants.");
MFEM_ASSERT(fespace->GetMesh()->GetNumGeometries(
fespace->GetMesh()->Dimension()) == 1,
"mixed meshes are not supported");
+42 -118
View File
@@ -1506,12 +1506,12 @@ void L2FaceRestriction::EnsureNormalDerivativeRestriction() const
}
}
InterpolationManager::InterpolationManager(const FiniteElementSpace &fes_,
ElementDofOrdering ordering_,
InterpolationManager::InterpolationManager(const FiniteElementSpace &fes,
ElementDofOrdering ordering,
FaceType type)
: fes(fes_),
ordering(ordering_),
interp_config(fes.GetNFbyType(type)),
: fes(fes),
ordering(ordering),
interp_config( fes.GetNFbyType(type) ),
nc_cpt(0)
{ }
@@ -1536,8 +1536,7 @@ void InterpolationManager::RegisterFaceCoarseToFineInterpolation(
face.element[0].local_face_id +
6*face.element[1].local_face_id +
36*face.element[1].orientation ;
// Unfortunately we can't trust uniqueness of the ptMat to identify the
// transformation.
// Unfortunately we can't trust unicity of the ptMat to identify the transformation.
Key key(ptMat, face_key);
auto itr = interp_map.find(key);
if ( itr == interp_map.end() )
@@ -1584,27 +1583,17 @@ const DenseMatrix* InterpolationManager::GetCoarseToFineInterpolation(
IsoparametricTransformation isotr;
isotr.SetIdentityTransformation(trace_fe->GetGeomType());
isotr.SetPointMat(*ptMat);
DenseMatrix& trans_pt_mat = isotr.GetPointMat();
// PointMatrix needs to be flipped in 2D
if ( trace_fe->GetGeomType()==Geometry::SEGMENT && !is_ghost_slave )
{
std::swap(trans_pt_mat(0,0),trans_pt_mat(0,1));
}
DenseMatrix native_interpolator(face_dofs,face_dofs);
trace_fe->GetLocalInterpolation(isotr, native_interpolator);
if (trace_fe->GetMapType() == FiniteElement::INTEGRAL)
{
// Handle potentially inverted Jacobian matrix
isotr.SetIntPoint(&Geometries.GetCenter(trace_fe->GetGeomType()));
native_interpolator *= (isotr.Weight() >= 0) ? 1.0 : -1.0;
}
const int dim = trace_fe->GetDim()+1;
const int dof1d = trace_fe->GetOrder()+1;
int orientation_i = face.element[1].orientation;
const int orientation_j = face.element[1].orientation;
// In 2D, need to flip orientation of the segments`
if (trace_fe->GetGeomType() == Geometry::SEGMENT && !is_ghost_slave)
{
orientation_i = 1;
}
const int orientation = face.element[1].orientation;
for (int i = 0; i < face_dofs; i++)
{
const int ni = (dof_map.Size()==0) ? i : dof_map[i];
@@ -1613,7 +1602,7 @@ const DenseMatrix* InterpolationManager::GetCoarseToFineInterpolation(
{
// master side is elem 2, so we permute to order dofs as elem 1.
li = PermuteFaceL2(dim, face_id2, face_id1,
orientation_i, dof1d, li);
orientation, dof1d, li);
}
for (int j = 0; j < face_dofs; j++)
{
@@ -1622,7 +1611,7 @@ const DenseMatrix* InterpolationManager::GetCoarseToFineInterpolation(
{
// master side is elem 2, so we permute to order dofs as elem 1.
lj = PermuteFaceL2(dim, face_id2, face_id1,
orientation_j, dof1d, lj);
orientation, dof1d, lj);
}
const int nj = (dof_map.Size()==0) ? j : dof_map[j];
(*interpolator)(li,lj) = native_interpolator(ni,nj);
@@ -1687,7 +1676,7 @@ NCL2FaceRestriction::NCL2FaceRestriction(const FiniteElementSpace &fes,
const L2FaceValues m,
bool build)
: L2FaceRestriction(fes, f_ordering, type, m, false),
interpolations(fes.GetInterpolationManager(ordering, type))
interpolations(fes, f_ordering, type)
{
if (!build) { return; }
x_interp.UseDevice(true);
@@ -2213,6 +2202,14 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
PermuteAndSetFaceDofsScatterIndices2(face,f_ind);
}
if ( face.IsConforming() )
{
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
}
else // Non-conforming face
{
interpolations.RegisterFaceCoarseToFineInterpolation(face,f_ind);
}
f_ind++;
}
else if ( type==FaceType::Boundary && face.IsBoundary() )
@@ -2222,6 +2219,7 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
SetBoundaryDofsScatterIndices2(face,f_ind);
}
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
f_ind++;
}
}
@@ -2234,6 +2232,10 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
gather_offsets[i] += gather_offsets[i - 1];
}
// Transform the interpolation matrix map into a contiguous memory structure.
interpolations.LinearizeInterpolatorMapIntoVector();
interpolations.InitializeNCInterpConfig();
}
void NCL2FaceRestriction::ComputeGatherIndices()
@@ -2276,18 +2278,6 @@ void NCL2FaceRestriction::ComputeGatherIndices()
gather_offsets[0] = 0;
}
static int GetSharedVSize(const FiniteElementSpace &fes)
{
#ifdef MFEM_USE_MPI
if (auto pfes = dynamic_cast<const ParFiniteElementSpace*>(&fes))
{
const_cast<ParFiniteElementSpace*>(pfes)->ExchangeFaceNbrData();
return pfes->GetFaceNbrVSize();
}
#endif
return 0;
}
L2InterfaceFaceRestriction::L2InterfaceFaceRestriction(
const FiniteElementSpace& fes_,
const ElementDofOrdering ordering_,
@@ -2298,54 +2288,25 @@ L2InterfaceFaceRestriction::L2InterfaceFaceRestriction(
nfaces(fes.GetNFbyType(type)),
vdim(fes.GetVDim()),
byvdim(fes.GetOrdering() == Ordering::byVDIM),
face_dofs(fes.GetTypicalTraceElement()->GetDof()),
face_dofs(nfaces > 0 ? fes.GetFaceElement(0)->GetDof() : 0),
nfdofs(face_dofs*nfaces),
ndofs(fes.GetNDofs()),
nsdofs(GetSharedVSize(fes))
ndofs(fes.GetNDofs())
{
height = nfdofs;
width = ndofs;
#ifdef MFEM_USE_MPI
auto pfes = dynamic_cast<const ParFiniteElementSpace*>(&fes);
#endif
const Table &face2dof = fes.GetFaceToDofTable();
const Mesh &mesh = *fes.GetMesh();
int face_idx = 0;
scatter_map.SetSize(nfdofs);
gather_map.SetSize(ndofs + nsdofs);
gather_map = -1;
Array<int> dofs;
for (int f = 0; f < mesh.GetNumFacesWithGhost(); ++f)
gather_map.SetSize(nfdofs);
for (int f = 0; f < mesh.GetNumFaces(); ++f)
{
Mesh::FaceInformation face = mesh.GetFaceInformation(f);
if (!face.IsOfFaceType(type) || face.IsNonconformingCoarse()) { continue; }
if (f < mesh.GetNumFaces())
if (!face.IsOfFaceType(type)) { continue; }
for (int i = 0; i < face_dofs; ++i)
{
// Local face
face2dof.GetRow(f, dofs);
for (int i = 0; i < face_dofs; ++i)
{
scatter_map[i + face_idx*face_dofs] = dofs[i];
gather_map[dofs[i]] = i + face_idx*face_dofs;
}
}
else
{
// Shared (non-conforming) ghost face
#ifdef MFEM_USE_MPI
MFEM_ASSERT(pfes != nullptr, "");
pfes->GetFaceNbrFaceVDofs(f, dofs);
for (int i = 0; i < face_dofs; ++i)
{
scatter_map[i + face_idx*face_dofs] = ndofs + dofs[i];
gather_map[ndofs + dofs[i]] = i + face_idx*face_dofs;
}
#endif
gather_map[i + face_idx*face_dofs] = face2dof.GetJ()[i + f*face_dofs];
}
++face_idx;
}
@@ -2353,19 +2314,13 @@ L2InterfaceFaceRestriction::L2InterfaceFaceRestriction(
void L2InterfaceFaceRestriction::Mult(const Vector &x, Vector &y) const
{
const int NDOFS = ndofs;
const int nd = face_dofs;
const int nf = nfaces;
const int vd = vdim;
const bool t = byvdim;
const int *map = scatter_map.Read();
Vector face_nbr_data = GetLVectorFaceNbrData(fes, x, type);
MFEM_ASSERT(face_nbr_data.Size() / vd == nsdofs, "");
const int *map = gather_map.Read();
const auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
const auto d_x_shared = Reshape(face_nbr_data.Read(),
t?vd:nsdofs, t?nsdofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, nf);
mfem::forall(nd*nf, [=] MFEM_HOST_DEVICE (int i)
@@ -2373,8 +2328,7 @@ void L2InterfaceFaceRestriction::Mult(const Vector &x, Vector &y) const
const int j = map[i];
for (int c = 0; c < vd; ++c)
{
if (j < NDOFS) { d_y(i % nd, c, i / nd) = d_x(t?c:j, t?j:c); }
else { d_y(i % nd, c, i / nd) = d_x_shared(t?c:(j-NDOFS), t?(j-NDOFS):c); }
d_y(i % nd, c, i / nd) = d_x(t?c:j, t?j:c);
}
});
}
@@ -2389,39 +2343,15 @@ void L2InterfaceFaceRestriction::AddMultTranspose(
const int *map = gather_map.Read();
const auto d_x = Reshape(x.Read(), nd, vd, nf);
auto d_y = Reshape(y.ReadWrite(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
mfem::forall(ndofs, [=] MFEM_HOST_DEVICE (int i)
mfem::forall(ndofs, [=] MFEM_HOST_DEVICE (int i) { d_y[i] = 0.0; });
mfem::forall(nd*nf, [=] MFEM_HOST_DEVICE (int i)
{
const int j = map[i];
if (j < 0) { return; }
for (int c = 0; c < vd; ++c)
{
d_y(t?c:i, t?i:c) += a*d_x(j % nd, c, j / nd);
}
});
}
void L2InterfaceFaceRestriction::MultTransposeShared(
const Vector &x, Vector &y) const
{
const int nd = face_dofs;
const int nf = nfaces;
const int vd = vdim;
const bool t = byvdim;
const int *map = gather_map.Read();
const auto d_x = Reshape(x.Read(), nd, vd, nf);
auto d_y = Reshape(y.Write(), t?vd:(ndofs+nsdofs), t?(ndofs+nsdofs):vd);
y = 0.0;
mfem::forall(ndofs + nsdofs, [=] MFEM_HOST_DEVICE (int i)
{
const int j = map[i];
if (j < 0) { return; }
for (int c = 0; c < vd; ++c)
{
d_y(t?c:i, t?i:c) = d_x(j % nd, c, j / nd);
d_y(t?c:j, t?j:c) = d_x(i % nd, c, i / nd);
}
});
}
@@ -2431,11 +2361,6 @@ const Array<int> &L2InterfaceFaceRestriction::GatherMap() const
return gather_map;
}
const Array<int> &L2InterfaceFaceRestriction::ScatterMap() const
{
return scatter_map;
}
Vector GetLVectorFaceNbrData(
const FiniteElementSpace &fes, const Vector &x, FaceType ftype)
{
@@ -2457,7 +2382,6 @@ Vector GetLVectorFaceNbrData(
{
ParGridFunction gf(pfes, const_cast<Vector&>(x));
gf.ExchangeFaceNbrData();
x.SyncMemory(gf);
return std::move(gf.FaceNbrData());
}
}
+14 -26
View File
@@ -812,12 +812,13 @@ protected:
PointMatrix and a local face identifier. */
using Key = std::pair<const DenseMatrix*,int>;
/// The temporary map used to store the different interpolators.
using Map =
std::unordered_map<Key, std::pair<int,const DenseMatrix*>, PairHasher>;
using Map = std::map<Key, std::pair<int,const DenseMatrix*>>;
Map interp_map; // The temporary map that stores the interpolators.
public:
/** @brief Constructor.
InterpolationManager() = delete;
/** @brief main constructor.
@param[in] fes The FiniteElementSpace on which this operates
@param[in] ordering Request a specific element ordering.
@@ -908,7 +909,7 @@ private:
class NCL2FaceRestriction : virtual public L2FaceRestriction
{
protected:
const InterpolationManager &interpolations;
InterpolationManager interpolations;
mutable Vector x_interp;
/** @brief Constructs an NCL2FaceRestriction, this is a specialization of a
@@ -995,7 +996,9 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows. */
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
void FillI(SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
@@ -1013,7 +1016,9 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows. */
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
void FillJAndData(const Vector &fea_data,
SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
@@ -1031,7 +1036,9 @@ public:
added the face contributions.
The format is: dofs x dofs x ne, where dofs is the
number of dofs per element and ne the number of
elements. */
elements.
@warning This method is not implemented yet. */
void AddFaceMatricesToElementMatrices(const Vector &fea_data,
Vector &ea_data) const override;
@@ -1123,9 +1130,7 @@ protected:
const int face_dofs; ///< Number of dofs on each face
const int nfdofs; ///< Total number of dofs on the faces (E-vector size)
const int ndofs; ///< Number of dofs in the space (L-vector size)
const int nsdofs; ///< Number of shared face neighbor (ghost) dofs
Array<int> gather_map; ///< Gather map
Array<int> scatter_map; ///< Scatter map
public:
/** @brief Constructs an L2InterfaceFaceRestriction.
@@ -1163,24 +1168,7 @@ public:
void AddMultTranspose(const Vector &x, Vector &y,
const real_t a = 1.0) const override;
/// @brief Gather degrees of freedom, from face E-vector to L-vector and
/// shared (ghost) DOFs.
///
/// @param[in] x The face E-Vector degrees of freedom with size
/// (face_dofs, vdim, nf), where nf is the number of
/// interior or boundary faces requested by @a type in the
/// constructor. The face_dofs should be ordered according
/// to the given ElementDofOrdering
/// @param[out] y Vector of length vsize + face neighbor vsize
void MultTransposeShared(const Vector &x, Vector &y) const;
const Array<int> &GatherMap() const override;
/// @brief Return the low-level mapping from L-dofs to E-dofs.
///
/// L-dofs that do not correspond to an E-dof (e.g. that lie on a face of a
/// different type) are given index -1.
const Array<int> &ScatterMap() const;
};
/** @brief Convert a dof face index from Native ordering to lexicographic
+12 -31
View File
@@ -333,12 +333,6 @@ void L2ProjectionGridTransfer::L2Projection::MixedMassEA(
int nel_ho = mesh_ho->GetNE();
int nel_lor = mesh_lor->GetNE();
if (nel_ho == 0)
{
M_LH.SetSize(0);
return;
}
const CoarseFineTransformations& cf_tr = mesh_lor->GetRefinementTransforms();
int nref_max = 0;
@@ -837,17 +831,11 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::Mult(
void L2ProjectionGridTransfer::L2ProjectionL2Space::EAMult(
const Vector &x, Vector &y) const
{
const int nel_ho = fes_ho.GetMesh()->GetNE();
if (nel_ho == 0)
{
return;
}
const int iho = 0;
const int nref = ho2lor.RowSize(iho);
const int ndof_ho = fes_ho.GetFE(iho)->GetDof();
const int ndof_lor = fes_lor.GetFE(ho2lor.GetRow(iho)[0])->GetDof();
const int nel_ho = fes_ho.GetMesh()->GetNE();
DenseTensor R_dt;
R_dt.NewMemoryAndSize(R.GetMemory(), ndof_lor*nref, ndof_ho, nel_ho, false);
@@ -899,17 +887,11 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::MultTranspose(
void L2ProjectionGridTransfer::L2ProjectionL2Space::EAMultTranspose(
const Vector &x, Vector &y) const
{
const int nel_ho = fes_ho.GetMesh()->GetNE();
if (nel_ho == 0)
{
return;
}
const int iho = 0;
const int nref = ho2lor.RowSize(iho);
const int ndof_ho = fes_ho.GetFE(iho)->GetDof();
const int ndof_lor = fes_lor.GetFE(ho2lor.GetRow(iho)[0])->GetDof();
const int nel_ho = fes_ho.GetMesh()->GetNE();
DenseTensor R_dt;
R_dt.NewMemoryAndSize(R.GetMemory(), ndof_lor*nref, ndof_ho, nel_ho, false);
@@ -919,6 +901,7 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::EAMultTranspose(
void L2ProjectionGridTransfer::L2ProjectionL2Space::Prolongate(
const Vector &x, Vector &y) const
{
if (fes_ho.GetNE() == 0) { return; }
if (use_ea)
@@ -977,13 +960,14 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::EAProlongate(
void L2ProjectionGridTransfer::L2ProjectionL2Space::ProlongateTranspose(
const Vector &x, Vector &y) const
{
if (fes_ho.GetNE() == 0) { return; }
if (use_ea)
{
return EAProlongateTranspose(x,y);
}
if (fes_ho.GetNE() == 0) { return; }
MFEM_VERIFY(P.Size() > 0, "Prolongation not supported for these spaces.")
int vdim = fes_ho.GetVDim();
Array<int> vdofs;
@@ -1260,6 +1244,13 @@ void L2ProjectionGridTransfer::L2ProjectionH1Space::EAL2ProjectionH1Space
int ndof_ho = pfes_ho.GetNDofs();
int ndof_lor = pfes_lor.GetNDofs();
// If the local mesh is empty, skip all computations
if (nel_ho == 0)
{
return;
}
const CoarseFineTransformations& cf_tr = mesh_lor->GetRefinementTransforms();
int nref_max = 0;
@@ -1869,11 +1860,6 @@ L2ProjectionGridTransfer::H1SpaceMixedMassOperator::H1SpaceMixedMassOperator(
void L2ProjectionGridTransfer::H1SpaceMixedMassOperator::Mult(const Vector &x,
Vector &y) const
{
if (fes_ho->GetNE() == 0)
{
return;
}
const Operator* elem_restrict_ho = fes_ho->GetElementRestriction(
ElementDofOrdering::NATIVE);
const Operator* elem_restrict_lor = fes_lor->GetElementRestriction(
@@ -1920,11 +1906,6 @@ void L2ProjectionGridTransfer::H1SpaceMixedMassOperator::Mult(const Vector &x,
void L2ProjectionGridTransfer::H1SpaceMixedMassOperator::MultTranspose(
const Vector &x, Vector &y) const
{
if (fes_ho->GetNE() == 0)
{
return;
}
const Operator* elem_restrict_ho = fes_ho->GetElementRestriction(
ElementDofOrdering::NATIVE);
const Operator* elem_restrict_lor = fes_lor->GetElementRestriction(
-2
View File
@@ -18,7 +18,6 @@ list(APPEND SRCS
gecko.cpp
globals.cpp
hash.cpp
hash_util.cpp
isockstream.cpp
mem_manager.cpp
occa.cpp
@@ -47,7 +46,6 @@ list(APPEND HDRS
globals.hpp
zstr.hpp
hash.hpp
hash_util.hpp
isockstream.hpp
kdtree.hpp
mem_alloc.hpp
-2
View File
@@ -44,7 +44,6 @@
#endif
#if !defined(MFEM_USE_CUDA_OR_HIP)
constexpr bool mfem_use_gpu = false;
#define MFEM_DEVICE
#define MFEM_HOST
#define MFEM_LAMBDA
@@ -53,7 +52,6 @@ constexpr bool mfem_use_gpu = false;
#define MFEM_DEVICE_SYNC
// MFEM_STREAM_SYNC is used for UVM and MPI GPU-Aware kernels
#define MFEM_STREAM_SYNC
#define MFEM_LAUNCH_BOUNDS(...)
#endif
#if !((defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)) || \
-2
View File
@@ -20,11 +20,9 @@
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
#define MFEM_USE_CUDA_OR_HIP
constexpr bool mfem_use_gpu = true;
#define MFEM_DEVICE __device__
#define MFEM_HOST __host__
#define MFEM_LAMBDA __host__
#define MFEM_LAUNCH_BOUNDS __launch_bounds__
// #define MFEM_HOST_DEVICE __host__ __device__ // defined in config/config.hpp
#define MFEM_DEVICE_SYNC MFEM_GPU_CHECK(cudaDeviceSynchronize())
#define MFEM_STREAM_SYNC MFEM_GPU_CHECK(cudaStreamSynchronize(0))
-25
View File
@@ -22,8 +22,6 @@
#include <unordered_map>
#include <map>
#include <sstream>
#include <iomanip>
namespace mfem
{
@@ -718,29 +716,6 @@ void Device::DeviceMem(size_t *free, size_t *total)
#endif
}
std::string Device::GetUUID(const int device_id)
{
std::stringstream res;
#if defined(MFEM_USE_CUDA)
cudaDeviceProp prop;
MFEM_GPU_CHECK(cudaGetDeviceProperties(&prop, device_id));
for (int i = 0; i < 16; ++i)
{
res << std::setfill('0') << std::setw(2) << std::hex
<< static_cast<unsigned>(prop.uuid.bytes[i]);
}
#elif defined(MFEM_USE_HIP)
hipUUID uuid;
MFEM_GPU_CHECK(hipDeviceGetUuid(&uuid, device_id));
for (int i = 0; i < 16; ++i)
{
res << std::setfill('0') << std::setw(2) << std::hex
<< static_cast<unsigned>(uuid.bytes[i]);
}
#endif
return res.str();
}
int Device::NumMultiprocessors(int dev)
{
#if defined(MFEM_USE_CUDA)
-4
View File
@@ -255,10 +255,6 @@ public:
/// Get the number of available devices (may be called before configuration).
static int GetDeviceCount();
/// Gets a string representation of the GPU UUID.
/// 0 <= @a device_id < GetDeviceCount()
static std::string GetUUID(const int device_id = 0);
/** @brief Return true if any of the backends in the backend mask, @a b_mask,
are allowed. */
/** This method can be used with any of the Backend::Id constants, the
+40 -203
View File
@@ -295,12 +295,11 @@ using hip_threads_z =
#endif
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_CUDA) && defined(__CUDACC__)
template <typename DBODY>
template <const int BLOCKS = MFEM_CUDA_BLOCKS, typename DBODY>
void RajaCuWrap1D(const int N, DBODY &&d_body)
{
//true denotes asynchronous kernel
RAJA::forall<RAJA::cuda_exec<MFEM_CUDA_BLOCKS,true>>(RAJA::RangeSegment(0,N),
d_body);
RAJA::forall<RAJA::cuda_exec<BLOCKS,true>>(RAJA::RangeSegment(0,N),d_body);
}
template <typename DBODY>
@@ -363,18 +362,18 @@ struct RajaCuWrap;
template <>
struct RajaCuWrap<1>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
RajaCuWrap1D(N, d_body);
RajaCuWrap1D<BLCK>(N, d_body);
}
};
template <>
struct RajaCuWrap<2>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -385,7 +384,7 @@ struct RajaCuWrap<2>
template <>
struct RajaCuWrap<3>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -396,12 +395,11 @@ struct RajaCuWrap<3>
#endif
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_HIP) && defined(__HIP__)
template <typename DBODY>
template <const int BLOCKS = MFEM_HIP_BLOCKS, typename DBODY>
void RajaHipWrap1D(const int N, DBODY &&d_body)
{
//true denotes asynchronous kernel
RAJA::forall<RAJA::hip_exec<MFEM_HIP_BLOCKS,true>>(RAJA::RangeSegment(0,N),
d_body);
RAJA::forall<RAJA::hip_exec<BLOCKS,true>>(RAJA::RangeSegment(0,N),d_body);
}
template <typename DBODY>
@@ -464,18 +462,18 @@ struct RajaHipWrap;
template <>
struct RajaHipWrap<1>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
RajaHipWrap1D(N, d_body);
RajaHipWrap1D<BLCK>(N, d_body);
}
};
template <>
struct RajaHipWrap<2>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -486,7 +484,7 @@ struct RajaHipWrap<2>
template <>
struct RajaHipWrap<3>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -586,31 +584,12 @@ void CuKernel2D(const int N, BODY body)
body(k);
}
// __launch_bounds__ second argument is omitted to get the default behavior
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void CuKernel2DLaunchBounds(const int N, BODY body)
{
const int k = blockIdx.x*blockDim.z + threadIdx.z;
if (k >= N) { return; }
body(k);
}
template <typename BODY> __global__ static
void CuKernel3D(const int N, BODY body)
{
for (int k = blockIdx.x; k < N; k += gridDim.x) { body(k); }
}
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void CuKernel3DLaunchBounds(const int N, BODY body)
{
for (int k = blockIdx.x; k < N; k += gridDim.x) { body(k); }
}
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
void CuWrap1D(const int N, DBODY &&d_body)
{
@@ -625,8 +604,6 @@ void CuWrap2D(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
// required for optimized GCC/NVCC builds to prevent runtime
// ODR/linkage violations of inlined templated kernel helpers
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
@@ -634,19 +611,6 @@ void CuWrap2D(const int N, DBODY &&d_body,
MFEM_GPU_CHECK(cudaGetLastError());
}
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void CuWrap2DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
static_assert(MAX_THREADS_PER_BLOCK > 0);
CuKernel2DLaunchBounds<MAX_THREADS_PER_BLOCK><<<GRID,BLCK>>>(N, d_body);
MFEM_GPU_CHECK(cudaGetLastError());
}
template <typename DBODY>
void CuWrap3D(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
@@ -658,35 +622,24 @@ void CuWrap3D(const int N, DBODY &&d_body,
MFEM_GPU_CHECK(cudaGetLastError());
}
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void CuWrap3DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
if (N==0) { return; }
const int GRID = G == 0 ? N : G;
const dim3 BLCK(X,Y,Z);
static_assert(MAX_THREADS_PER_BLOCK > 0);
CuKernel3DLaunchBounds<MAX_THREADS_PER_BLOCK><<<GRID, BLCK>>>(N, d_body);
MFEM_GPU_CHECK(cudaGetLastError());
}
template <int Dim>
struct CuWrap;
template <int Dim, int MAX_THREADS_PER_BLOCK> struct CuWrap;
template <int MAX_THREADS_PER_BLOCK>
struct CuWrap<1, MAX_THREADS_PER_BLOCK>
template <>
struct CuWrap<1>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
CuWrap1D<MFEM_CUDA_BLOCKS>(N, d_body);
CuWrap1D<BLCK>(N, d_body);
}
};
template <>
struct CuWrap<2, 0>
struct CuWrap<2>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -694,22 +647,10 @@ struct CuWrap<2, 0>
}
};
template <int MAX_THREADS_PER_BLOCK>
struct CuWrap<2, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
static_assert(MAX_THREADS_PER_BLOCK > 0);
CuWrap2DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z);
}
};
template <>
struct CuWrap<3, 0>
struct CuWrap<3>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -717,17 +658,6 @@ struct CuWrap<3, 0>
}
};
template <int MAX_THREADS_PER_BLOCK>
struct CuWrap<3, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
CuWrap3DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z, G);
}
};
#endif // defined(MFEM_USE_CUDA) && defined(__CUDACC__)
@@ -750,31 +680,13 @@ void HipKernel2D(const int N, BODY body)
body(k);
}
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void HipKernel2DLaunchBounds(const int N, BODY body)
{
const int k = hipBlockIdx_x*hipBlockDim_z + hipThreadIdx_z;
if (k >= N) { return; }
body(k);
}
template <typename BODY> __global__ static
void HipKernel3D(const int N, BODY body)
{
for (int k = hipBlockIdx_x; k < N; k += hipGridDim_x) { body(k); }
}
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void HipKernel3DLaunchBounds(const int N, BODY body)
{
for (int k = hipBlockIdx_x; k < N; k += hipGridDim_x) { body(k); }
}
template <int BLCK = MFEM_HIP_BLOCKS, typename DBODY>
template <const int BLCK = MFEM_HIP_BLOCKS, typename DBODY>
void HipWrap1D(const int N, DBODY &&d_body)
{
if (N==0) { return; }
@@ -788,27 +700,12 @@ void HipWrap2D(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
hipLaunchKernelGGL(HipKernel2D,GRID,BLCK,0,nullptr,N,d_body);
MFEM_GPU_CHECK(hipGetLastError());
}
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void HipWrap2DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
static_assert(MAX_THREADS_PER_BLOCK > 0);
HipKernel2DLaunchBounds<MAX_THREADS_PER_BLOCK><<<dim3(GRID), dim3(BLCK), 0, 0>>>
(N, d_body);
MFEM_GPU_CHECK(hipGetLastError());
}
template <typename DBODY>
void HipWrap3D(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
@@ -820,36 +717,24 @@ void HipWrap3D(const int N, DBODY &&d_body,
MFEM_GPU_CHECK(hipGetLastError());
}
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void HipWrap3DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
if (N==0) { return; }
const int GRID = G == 0 ? N : G;
const dim3 BLCK(X,Y,Z);
static_assert(MAX_THREADS_PER_BLOCK > 0);
HipKernel3DLaunchBounds<MAX_THREADS_PER_BLOCK><<<dim3(GRID), dim3(BLCK), 0, 0>>>
(N, d_body);
MFEM_GPU_CHECK(hipGetLastError());
}
template <int Dim>
struct HipWrap;
template <int Dim, int MAX_THREADS_PER_BLOCK> struct HipWrap;
template <int MAX_THREADS_PER_BLOCK>
struct HipWrap<1, MAX_THREADS_PER_BLOCK>
template <>
struct HipWrap<1>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
HipWrap1D<MFEM_HIP_BLOCKS>(N, d_body);
HipWrap1D<BLCK>(N, d_body);
}
};
template <>
struct HipWrap<2, 0>
struct HipWrap<2>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -857,21 +742,10 @@ struct HipWrap<2, 0>
}
};
template <int MAX_THREADS_PER_BLOCK>
struct HipWrap<2, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
HipWrap2DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z);
}
};
template <>
struct HipWrap<3, 0>
struct HipWrap<3>
{
template <typename DBODY>
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -879,24 +753,11 @@ struct HipWrap<3, 0>
}
};
template <int MAX_THREADS_PER_BLOCK>
struct HipWrap<3, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
HipWrap3DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z, G);
}
};
#endif // defined(MFEM_USE_HIP) && defined(__HIP__)
///////////////////////////////////////////////////////////////////////////////
/// Forall host & device kernel dispatch
template <int DIM, int MAX_THREADS_PER_BLOCK = 0,
typename d_lambda, typename h_lambda>
/// The forall kernel body wrapper
template <const int DIM, typename d_lambda, typename h_lambda>
inline void ForallWrap(const bool use_dev, const int N,
d_lambda &&d_body, h_lambda &&h_body,
const int X=0, const int Y=0, const int Z=0,
@@ -929,7 +790,7 @@ inline void ForallWrap(const bool use_dev, const int N,
// If Backend::CUDA is allowed, use it
if (Device::Allows(Backend::CUDA))
{
return CuWrap<DIM, MAX_THREADS_PER_BLOCK>::run(N, d_body, X, Y, Z, G);
return CuWrap<DIM>::run(N, d_body, X, Y, Z, G);
}
#endif
@@ -937,7 +798,7 @@ inline void ForallWrap(const bool use_dev, const int N,
// If Backend::HIP is allowed, use it
if (Device::Allows(Backend::HIP))
{
return HipWrap<DIM, MAX_THREADS_PER_BLOCK>::run(N, d_body, X, Y, Z, G);
return HipWrap<DIM>::run(N, d_body, X, Y, Z, G);
}
#endif
@@ -966,9 +827,7 @@ backend_cpu:
for (int k = 0; k < N; k++) { h_body(k); }
}
///////////////////////////////////////////////////////////////////////////////
/// Forall host & device kernel wrappers
template <int DIM, typename lambda>
template <const int DIM, typename lambda>
inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
const int X=0, const int Y=0, const int Z=0,
const int G=0)
@@ -976,16 +835,6 @@ inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
ForallWrap<DIM>(use_dev, N, body, body, X, Y, Z, G);
}
template <int DIM, int MAX_THREADS_PER_BLOCK, typename lambda>
inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
const int X=0, const int Y=0, const int Z=0,
const int G=0)
{
ForallWrap<DIM, MAX_THREADS_PER_BLOCK>(use_dev, N, body, body, X, Y, Z, G);
}
///////////////////////////////////////////////////////////////////////////////
// forall interfaces
template<typename lambda>
inline void forall(int N, lambda &&body) { ForallWrap<1>(true, N, body); }
@@ -994,7 +843,7 @@ inline void forall(int Nx, int Ny, lambda &&body)
{
if (Device::Allows(Backend::DEVICE_MASK))
{
mfem::forall(Nx * Ny, [=] MFEM_HOST_DEVICE(int idx)
forall(Nx * Ny, [=] MFEM_HOST_DEVICE(int idx)
{
int j = idx / Nx;
int i = idx % Nx;
@@ -1030,7 +879,7 @@ inline void forall(int Nx, int Ny, int Nz, lambda &&body)
{
if (Device::Allows(Backend::DEVICE_MASK))
{
mfem::forall(Nx * Ny * Nz, [=] MFEM_HOST_DEVICE(int idx)
forall(Nx * Ny * Nz, [=] MFEM_HOST_DEVICE(int idx)
{
int i = idx % Nx;
int j = idx / Nx;
@@ -1078,12 +927,6 @@ inline void forall_2D(int N, int X, int Y, lambda &&body)
ForallWrap<2>(true, N, body, X, Y, 1);
}
template<int MAX_THREADS_PER_BLOCK, typename lambda>
inline void forall_2D(int N, int X, int Y, lambda &&body)
{
ForallWrap<2, MAX_THREADS_PER_BLOCK>(true, N, body, X, Y, 1);
}
template<typename lambda>
inline void forall_2D_batch(int N, int X, int Y, int BZ, lambda &&body)
{
@@ -1096,12 +939,6 @@ inline void forall_3D(int N, int X, int Y, int Z, lambda &&body)
ForallWrap<3>(true, N, body, X, Y, Z, 0);
}
template<int MAX_THREADS_PER_BLOCK, typename lambda>
inline void forall_3D(int N, int X, int Y, int Z, lambda &&body)
{
ForallWrap<3, MAX_THREADS_PER_BLOCK>(true, N, body, X, Y, Z, 0);
}
template<typename lambda>
inline void forall_3D_grid(int N, int X, int Y, int Z, int G, lambda &&body)
{
+155
View File
@@ -80,4 +80,159 @@ std::string HashFunction::GetHash() const
return hash;
}
constexpr static uint64_t rotl64(uint64_t x, int r)
{
return (x << r) | (x >> (64 - r));
}
void Hasher::init(uint64_t seed)
{
data[0] = seed;
data[1] = seed;
nbytes = 0;
}
void Hasher::add_block(uint64_t k1, uint64_t k2)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] = rotl64(data[0], 27);
data[0] += data[1];
data[0] = data[0] * 5 + 0x52dce729ull;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
data[1] = rotl64(data[1], 31);
data[1] += data[0];
data[1] = data[1] * 5 + 0x38495ab5ull;
}
static uint64_t fmix64(uint64_t k)
{
// http://zimbry.blogspot.com/2011/09/better-bit-mixing-improving-on.html
// mix13
k ^= k >> 30;
k *= 0xbf58476d1ce4e5b9ull;
k ^= k >> 27;
k *= 0x94d049bb133111ebull;
k ^= k >> 31;
return k;
}
void Hasher::append(const uint8_t *vs, uint64_t bytes)
{
if (bytes == 0)
{
return;
}
auto rem = nbytes % 16;
nbytes += bytes;
uint8_t *tmp = reinterpret_cast<uint8_t *>(buf_);
while (true)
{
if (bytes + rem >= 16)
{
std::copy(vs, vs + 16 - rem, tmp + rem);
add_block(buf_[0], buf_[1]);
vs += (16 - rem);
bytes -= (16 - rem);
rem = 0;
}
else
{
std::copy(vs, vs + bytes, tmp + rem);
return;
}
}
}
void Hasher::finalize()
{
auto rem = nbytes % 16;
if (rem > 0)
{
nbytes -= rem;
if (rem <= 8)
{
finalize(buf_[0], rem);
}
else
{
finalize(buf_[0], buf_[1], rem);
}
return;
}
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, uint64_t k2, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
} // namespace mfem
+70 -1
View File
@@ -15,8 +15,8 @@
#include "../config/config.hpp"
#include "array.hpp"
#include "globals.hpp"
#include "hash_util.hpp"
#include <array>
#include <cstdint>
#include <type_traits>
#include <utility>
@@ -457,6 +457,75 @@ protected:
int BinSize(int idx) const;
};
///
/// @brief streaming implementation for murmurhash3 128 (x64).
/// Constructs the hash in 3 stages: init, append, finalize.
///
struct Hasher
{
/// where the final hash result is stored after finalize. Use data[1] when
/// only 64 bits are required.
uint64_t data[2] = {0, 0};
private:
uint64_t nbytes = 0;
uint64_t buf_[2] = {0, 0};
public:
/// resets this hasher back to an initial seed
void init(uint64_t seed = 0);
void append(const uint8_t *vs, uint64_t bytes);
void finalize();
private:
// add 16 bytes
void add_block(uint64_t k1, uint64_t k2);
// add [1-8] more bytes, then finalize
void finalize(uint64_t k1, int num);
// add [1-15] more bytes, then finalize
// 0 < num < 16
void finalize(uint64_t k1, uint64_t k2, int num);
};
/// Helper class for hashing std::pair. Usable in place of std::hash<std::pair<T,U>>
struct PairHasher
{
template <class T, class V>
size_t operator()(const std::pair<T, V> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
hash.append(reinterpret_cast<const uint8_t *>(&v.first), sizeof(T));
hash.append(reinterpret_cast<const uint8_t *>(&v.second), sizeof(V));
hash.finalize();
return hash.data[1];
}
};
/// Helper class for hashing std::array. Usable in place of std::hash<std::array<T,N>>
struct ArrayHasher
{
template <class T, size_t N>
size_t operator()(const std::array<T, N> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
for (size_t i = 0; i < N; ++i)
{
hash.append(reinterpret_cast<const uint8_t *>(&v[i]), sizeof(T));
}
hash.finalize();
return hash.data[1];
}
};
/// Hash function for data sequences.
/** Depends on GnuTLS for SHA-256 hashing. */
class HashFunction
-172
View File
@@ -1,172 +0,0 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "hash_util.hpp"
namespace mfem
{
constexpr static uint64_t rotl64(uint64_t x, int r)
{
return (x << r) | (x >> (64 - r));
}
void Hasher::init(uint64_t seed)
{
data[0] = seed;
data[1] = seed;
nbytes = 0;
}
void Hasher::add_block(uint64_t k1, uint64_t k2)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] = rotl64(data[0], 27);
data[0] += data[1];
data[0] = data[0] * 5 + 0x52dce729ull;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
data[1] = rotl64(data[1], 31);
data[1] += data[0];
data[1] = data[1] * 5 + 0x38495ab5ull;
}
static uint64_t fmix64(uint64_t k)
{
// http://zimbry.blogspot.com/2011/09/better-bit-mixing-improving-on.html
// mix13
k ^= k >> 30;
k *= 0xbf58476d1ce4e5b9ull;
k ^= k >> 27;
k *= 0x94d049bb133111ebull;
k ^= k >> 31;
return k;
}
void Hasher::append(const std::byte *vs, uint64_t bytes)
{
if (bytes == 0)
{
return;
}
auto rem = nbytes % 16;
nbytes += bytes;
std::byte *tmp = reinterpret_cast<std::byte *>(buf_);
while (true)
{
if (bytes + rem >= 16)
{
std::copy(vs, vs + 16 - rem, tmp + rem);
add_block(buf_[0], buf_[1]);
vs += (16 - rem);
bytes -= (16 - rem);
rem = 0;
}
else
{
std::copy(vs, vs + bytes, tmp + rem);
return;
}
}
}
void Hasher::finalize()
{
auto rem = nbytes % 16;
if (rem > 0)
{
nbytes -= rem;
if (rem <= 8)
{
finalize(buf_[0], rem);
}
else
{
finalize(buf_[0], buf_[1], rem);
}
return;
}
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, uint64_t k2, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
}
-172
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@@ -1,172 +0,0 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_HASH_UTIL_HPP
#define MFEM_HASH_UTIL_HPP
#include <array>
#include <cstddef>
#include <tuple>
#include <functional>
#include <utility>
#include <cstdint>
namespace mfem
{
/// @brief streaming implementation for murmurhash3 128 (x64).
///
/// Constructs the hash in 3 stages: init, append, finalize.
struct Hasher
{
/// @brief Storage for the final hash result after finalize() is called.
///
/// Use data[1] when only 64 bits are required.
uint64_t data[2] = {0, 0};
private:
uint64_t nbytes = 0;
uint64_t buf_[2] = {0, 0};
public:
/// Resets the Hasher back to an initial seed
void init(uint64_t seed = 0);
/// Append data @a vs of size @a bytes.
void append(const std::byte *vs, uint64_t bytes);
void finalize();
private:
/// Add a block of 16 bytes.
void add_block(uint64_t k1, uint64_t k2);
/// @brief Add [1-8] more bytes, then finalize.
///
/// @a num must satisfy 0 < num < 9.
void finalize(uint64_t k1, int num);
/// @brief Add [1-15] more bytes, then finalize.
///
/// @a num must satisfy 0 < num < 16.
void finalize(uint64_t k1, uint64_t k2, int num);
};
template <class T> struct ChainedHasher
{
static void Append(Hasher &hasher, const T &value)
{
if constexpr (std::is_fundamental_v<T> || std::is_pointer_v<T>)
{
hasher.append(reinterpret_cast<const std::byte *>(&value), sizeof(T));
}
else
{
std::hash<T> h;
auto v = h(value);
hasher.append(reinterpret_cast<std::byte *>(&v), sizeof(v));
}
}
};
template <class T, class V> struct ChainedHasher<std::pair<T, V>>
{
static void Append(Hasher &hasher, const std::pair<T, V> &value)
{
ChainedHasher<T>::Append(hasher, value.first);
ChainedHasher<V>::Append(hasher, value.second);
}
};
template <class T, size_t N> struct ChainedHasher<std::array<T, N>>
{
static void Append(Hasher &hasher, const std::array<T, N> &value)
{
for (size_t i = 0; i < N; ++i)
{
ChainedHasher<T>::Append(hasher, value[i]);
}
}
};
template<class... Ts> struct ChainedHasher<std::tuple<Ts...>>
{
private:
template <size_t N>
static void AppendImpl(Hasher &hasher, const std::tuple<Ts...> &value)
{
ChainedHasher<std::decay_t<decltype(std::get<N>(value))>>::Append(
hasher, std::get<N>(value));
if constexpr (N + 1 < sizeof...(Ts))
{
AppendImpl<N + 1>(hasher, value);
}
}
public:
static void Append(Hasher &hasher, const std::tuple<Ts...> &value)
{
if constexpr (sizeof...(Ts))
{
AppendImpl<0>(hasher, value);
}
}
};
/// Helper class for hashing std::pair of hashable types.
struct PairHasher
{
template <class T, class V>
size_t operator()(const std::pair<T, V> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
ChainedHasher<std::pair<T, V>>::Append(hash, v);
hash.finalize();
return hash.data[1];
}
};
/// Helper class for hashing std::array of a hashable type.
struct ArrayHasher
{
template <class T, size_t N>
size_t operator()(const std::array<T, N> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
ChainedHasher<std::array<T, N>>::Append(hash, v);
hash.finalize();
return hash.data[1];
}
};
/// Helper class for hashing std::tuple of hashable types.
struct TupleHasher
{
template <class T>
size_t operator()(const T &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
ChainedHasher<T>::Append(hash, v);
hash.finalize();
return hash.data[1];
}
};
} // namespace mfem
#endif
-2
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@@ -20,11 +20,9 @@
#if defined(MFEM_USE_HIP) && defined(__HIP__)
#define MFEM_USE_CUDA_OR_HIP
constexpr bool mfem_use_gpu = true;
#define MFEM_DEVICE __device__
#define MFEM_HOST __host__
#define MFEM_LAMBDA __host__ __device__
#define MFEM_LAUNCH_BOUNDS __launch_bounds__
// #define MFEM_HOST_DEVICE __host__ __device__ // defined in config/config.hpp
#define MFEM_DEVICE_SYNC MFEM_GPU_CHECK(hipDeviceSynchronize())
#define MFEM_STREAM_SYNC MFEM_GPU_CHECK(hipStreamSynchronize(0))
+1 -1
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@@ -146,7 +146,7 @@ public:
int *ReadWriteJ(bool on_dev = true) { return J.ReadWrite(on_dev); }
const int *HostReadJ() const { return J.HostRead(); }
int *HostWriteJ() { return J.HostWrite(); }
int *HostReadWriteJ() { return J.HostReadWrite(); }
int *ReadWriteJ() { return J.HostReadWrite(); }
/// Sort the column (TYPE II) indices in each row.
void SortRows();
-1
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@@ -55,7 +55,6 @@ list(APPEND HDRS
dinvariants.hpp
dtensor.hpp
dual.hpp
eigensolver.hpp
filteredsolver.hpp
handle.hpp
invariants.hpp
-29
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@@ -1370,35 +1370,6 @@ void DenseMatrix::Getl1Diag(Vector &l) const
}
}
void DenseMatrix::GetRowl1(Vector &l) const
{
l.SetSize(height);
l = 0.0;
for (int j = 0; j < width; ++j)
for (int i = 0; i < height; ++i)
{
l(i) += fabs((*this)(i,j));
}
}
void DenseMatrix::GetRowl2(Vector &l) const
{
l.SetSize(height);
l = 0.0;
for (int j = 0; j < width; ++j)
for (int i = 0; i < height; ++i)
{
l[i] += operator()(i,j)*operator()(i,j);
}
for (int i = 0; i < height; ++i)
{
l[i] = sqrt(l[i]);
}
}
void DenseMatrix::GetRowSums(Vector &l) const
{
l.SetSize(height);
+2 -6
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@@ -346,12 +346,8 @@ public:
/// Returns the diagonal of the matrix
void GetDiag(Vector &d) const;
/// Returns the l1 norm of the rows of the matrix v_i = sum_j |a_ij|
MFEM_DEPRECATED void Getl1Diag(Vector &l) const;
/// Returns the l1 norm of the rows of the matrix v_i = sum_j |a_ij|
void GetRowl1(Vector &l) const;
/// Returns the l2norm of the rows of the DenseMatrix
void GetRowl2(Vector &l) const;
/// Returns the row sums of the DenseMatrix
void Getl1Diag(Vector &l) const;
/// Compute the row sums of the DenseMatrix
void GetRowSums(Vector &l) const;
/// Creates n x n diagonal matrix with diagonal elements c
-203
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@@ -1,203 +0,0 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
/**
* @file eigensolver.hpp
*
* @brief This file contains a common interface for all eigensolver classes
*/
#ifndef MFEM_EIGENSOLVER
#define MFEM_EIGENSOLVER
#ifdef MFEM_HYPRE
#include "hypre.hpp"
#endif
#ifdef MFEM_SLEPC
#include "slepc.hpp"
#endif
namespace mfem
{
enum class EigenSolverType
{
HYPRE,
SLEPC,
INVALID_TYPE
};
/// Provides base class for MFEM Eigensolvers
class EigenSolverBase
{
public:
EigenSolverBase() {}
/// Destructor
virtual ~EigenSolverBase() = default;
/// Solves the eigenvalue problem
virtual void Solve() = 0;
/// Set the required number of modes
virtual void SetNumModes(int num_Modes)
{
numModes=num_Modes;
}
/// @brief Set the operator to the eigenvalue problem
/// @param A - operator
virtual void SetOperator(Operator& A) = 0;
/// @brief Sets operators for the generalized eigenvalue problem
/// @param A - operator
/// @param M - mass matrix
virtual void SetOperator(Operator& A, Operator& M)
{
MFEM_ABORT("Generalized eigensolver is not supported!");
}
/// Optional method - sets preconditioner for the
/// eigenvalue solver.
virtual void SetPreconditioner(Solver& precond)
{
MFEM_ABORT("Preconditioner is not supported!");
}
/// Returns the converged eigenvalues
virtual void GetEigenvalues(Array<real_t>& eigen_vals) = 0;
/// Returns the vec_index eigenvector.
virtual void GetEigenvector(int vec_index, Vector& vector) = 0;
/// Returns the eigensolver type.
EigenSolverType GetSolverType() { return eigSolverType; }
protected:
int numModes = 0;
EigenSolverType eigSolverType = EigenSolverType::INVALID_TYPE;
};
#ifdef MFEM_HYPRE
class EigenSolverHypreLOBPCG : public EigenSolverBase
{
public:
EigenSolverHypreLOBPCG(MPI_Comm comm)
{
eigenSolver = std::make_unique<HypreLOBPCG>(comm);
eigSolverType = EigenSolverType::HYPRE;
}
~EigenSolverHypreLOBPCG() {}
void Solve() override { eigenSolver->Solve(); }
void SetNumModes(int num_Modes) override
{
eigenSolver->SetNumModes(num_Modes);
numModes = num_Modes;
}
void SetOperator(Operator& A) override { eigenSolver->SetOperator(A); }
void SetOperator(Operator& A, Operator& M) override
{
eigenSolver->SetOperator(A);
eigenSolver->SetMassMatrix(M);
}
void SetPreconditioner(Solver& precond) override { eigenSolver->SetPreconditioner(precond); }
void GetEigenvalues(Array<real_t>& eigen_vals) override { eigenSolver->GetEigenvalues(eigen_vals); }
void GetEigenvector(int vec_index, Vector& vector) override
{
const HypreParVector& eigenvec = eigenSolver->GetEigenvector(vec_index);
vector = eigenvec;
}
void SetTol(real_t tol) { eigenSolver->SetTol(tol); }
void SetRelTol(real_t rel_tol) { eigenSolver->SetRelTol(rel_tol); }
void SetMaxIter(int max_iter) { eigenSolver->SetMaxIter(max_iter); }
void SetPrintLevel(int logging) { eigenSolver->SetPrintLevel(logging); }
void SetRandomSeed(int seed) { eigenSolver->SetRandomSeed(seed); }
void SetPrecondUsageMode(int usage_mode) { eigenSolver->SetPrecondUsageMode(usage_mode); }
private:
std::unique_ptr<HypreLOBPCG> eigenSolver = nullptr;
};
#endif
#ifdef MFEM_SLEPC
class EigenSolverSlepc : public EigenSolverBase
{
public:
EigenSolverSlepc(MPI_Comm comm)
{
eigSolverType = EigenSolverType::SLEPC;
eigenSolver = std::make_unique<SlepcEigenSolver>(comm);
eigenSolver->SetWhichEigenpairs(SlepcEigenSolver::TARGET_REAL);
eigenSolver->SetTarget(0.0);
eigenSolver->SetSpectralTransformation(SlepcEigenSolver::SHIFT_INVERT);
}
~EigenSolverSlepc() {}
void Solve() override { eigenSolver->Solve(); }
void SetNumModes(int num_Modes) override
{
eigenSolver->SetNumModes(num_Modes);
numModes = num_Modes;
}
/// @brief Set the operator to the slepc eigenvalue problem. This method deep copies data to create a PetscParMatrix
/// @param A - operator, must be of type HypreParMatrix.
void SetOperator(Operator& A) override
{
petscMatA = std::make_unique<PetscParMatrix>
(dynamic_cast<HypreParMatrix*>(&A));
eigenSolver->SetOperator(*petscMatA);
}
/// @brief Set the operators to the slepc eigenvalue problem. This method deep copies data to create a PetscParMatrix
/// @param A - operator, must be of type HypreParMatrix.
/// @param M - operator, must be of type HypreParMatrix.
void SetOperator(Operator& A, Operator& M) override
{
petscMatA = std::make_unique<PetscParMatrix>
(dynamic_cast<const HypreParMatrix*>(&A));
petscMatM = std::make_unique<PetscParMatrix>
(dynamic_cast<const HypreParMatrix*>(&M));
eigenSolver->SetOperators(*petscMatA, *petscMatM);
}
void SetPreconditioner([[maybe_unused]] Solver& precond) override {}
void GetEigenvalues(Array<real_t>& eigen_vals) override
{
eigen_vals.SetSize(numModes);
for (int ik = 0; ik < numModes; ik++)
{
eigenSolver->GetEigenvalue(static_cast<unsigned int>(ik), eigen_vals[ik]);
}
}
void GetEigenvector( int vec_index, Vector& vector) override
{ eigenSolver->GetEigenvector(vec_index, vector); }
void SetTol(real_t tol) { eigenSolver->SetTol(tol); }
void SetMaxIter(int max_iter) { eigenSolver->SetMaxIter(max_iter); }
private:
std::unique_ptr<SlepcEigenSolver> eigenSolver = nullptr;
std::unique_ptr<PetscParMatrix> petscMatA = nullptr;
std::unique_ptr<PetscParMatrix> petscMatM = nullptr;
};
#endif
} // namespace mfem
#endif
+147 -824
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+80 -755
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-186
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@@ -1681,13 +1681,6 @@ void HypreParMatrix::GetOffd(SparseMatrix &offd, HYPRE_BigInt* &cmap) const
cmap = A->col_map_offd;
}
void HypreParMatrix::GetOffdColMap(HYPRE_BigInt* &cmap,
HYPRE_Int &num_cols) const
{
cmap = A->col_map_offd;
num_cols = hypre_CSRMatrixNumCols(A->offd);
}
void HypreParMatrix::MergeDiagAndOffd(SparseMatrix &merged)
{
HostRead();
@@ -3634,25 +3627,12 @@ void HypreSmoother::SetType(HypreSmoother::Type type_, int relax_times_)
relax_times = relax_times_;
}
void HypreSmoother::GetType(HypreSmoother::Type &type_, int &relax_times_) const
{
type_ = static_cast<HypreSmoother::Type>(type);
relax_times_ = relax_times;
}
void HypreSmoother::SetSOROptions(real_t relax_weight_, real_t omega_)
{
relax_weight = relax_weight_;
omega = omega_;
}
void HypreSmoother::GetSOROptions(real_t &relax_weight_, real_t &omega_) const
{
// TODO: are these used for all smoother types?
relax_weight_ = relax_weight;
omega_ = omega;
}
void HypreSmoother::SetPolyOptions(int poly_order_, real_t poly_fraction_,
int eig_est_cg_iter_)
{
@@ -3661,15 +3641,6 @@ void HypreSmoother::SetPolyOptions(int poly_order_, real_t poly_fraction_,
eig_est_cg_iter = eig_est_cg_iter_;
}
void HypreSmoother::GetPolyOptions(int &poly_order_, real_t &poly_fraction_,
int &eig_est_cg_iter_) const
{
// TODO: are these used for all smoother types?
poly_order_ = poly_order;
poly_fraction_ = poly_fraction;
eig_est_cg_iter_ = eig_est_cg_iter;
}
void HypreSmoother::SetTaubinOptions(real_t lambda_, real_t mu_,
int taubin_iter_)
{
@@ -3678,14 +3649,6 @@ void HypreSmoother::SetTaubinOptions(real_t lambda_, real_t mu_,
taubin_iter = taubin_iter_;
}
void HypreSmoother::GetTaubinOptions(real_t &lambda_, real_t &mu_,
int &taubin_iter_) const
{
lambda_ = lambda;
mu_ = mu;
taubin_iter_ = taubin_iter;
}
void HypreSmoother::SetWindowByName(const char* name)
{
real_t a = -1, b, c;
@@ -3708,13 +3671,6 @@ void HypreSmoother::SetWindowParameters(real_t a, real_t b, real_t c)
window_params[2] = c;
}
void HypreSmoother::GetWindowParameters(real_t &a, real_t &b, real_t &c) const
{
a = window_params[0];
b = window_params[1];
c = window_params[2];
}
void HypreSmoother::SetOperator(const Operator &op)
{
A = const_cast<HypreParMatrix *>(dynamic_cast<const HypreParMatrix *>(&op));
@@ -4210,20 +4166,12 @@ HypreSolver::~HypreSolver()
auxX.Delete();
}
void HyprePCG::SetDefaultOptions()
{
// Explicitly set just in case past/future versions of hypre change the
// defaults
SetTol(1e-6);
SetMaxIter(1000);
}
HyprePCG::HyprePCG(MPI_Comm comm) : precond(NULL)
{
iterative_mode = true;
HYPRE_ParCSRPCGCreate(comm, &pcg_solver);
SetDefaultOptions();
}
HyprePCG::HyprePCG(const HypreParMatrix &A_) : HypreSolver(&A_), precond(NULL)
@@ -4235,7 +4183,6 @@ HyprePCG::HyprePCG(const HypreParMatrix &A_) : HypreSolver(&A_), precond(NULL)
HYPRE_ParCSRMatrixGetComm(*A, &comm);
HYPRE_ParCSRPCGCreate(comm, &pcg_solver);
SetDefaultOptions();
}
void HyprePCG::SetOperator(const Operator &op)
@@ -4260,54 +4207,21 @@ void HyprePCG::SetOperator(const Operator &op)
auxX.Delete(); auxX.Reset();
}
void HyprePCG::SetUseTwoNorm(bool val)
{
HYPRE_PCGSetTwoNorm(pcg_solver, val);
}
bool HyprePCG::GetUseTwoNorm() const
{
HYPRE_Int val;
HYPRE_PCGGetTwoNorm(pcg_solver, &val);
return val != 0;
}
void HyprePCG::SetTol(real_t tol)
{
HYPRE_PCGSetTol(pcg_solver, tol);
}
real_t HyprePCG::GetTol() const
{
HYPRE_Real tol;
HYPRE_PCGGetTol(pcg_solver, &tol);
return tol;
}
void HyprePCG::SetAbsTol(real_t atol)
{
HYPRE_PCGSetAbsoluteTol(pcg_solver, atol);
}
real_t HyprePCG::GetAbsTol() const
{
HYPRE_Real atol;
hypre_PCGGetAbsoluteTol(pcg_solver, &atol);
return atol;
}
void HyprePCG::SetMaxIter(int max_iter)
{
HYPRE_PCGSetMaxIter(pcg_solver, max_iter);
}
int HyprePCG::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_PCGGetMaxIter(pcg_solver, &max_iter);
return max_iter;
}
void HyprePCG::SetLogging(int logging)
{
HYPRE_PCGSetLogging(pcg_solver, logging);
@@ -4423,20 +4337,6 @@ HyprePCG::~HyprePCG()
HYPRE_ParCSRPCGDestroy(pcg_solver);
}
#if MFEM_HYPRE_VERSION >= 21500
HypreParVector HyprePCG::GetResiduals() const
{
HYPRE_ParVector r;
HYPRE_ParCSRPCGGetResidual(pcg_solver, &r);
return HypreParVector(r);
}
void HyprePCG::GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p) const
{
auto r = GetResiduals();
ParNormlp(r, p, r.GetComm());
}
#endif
HypreGMRES::HypreGMRES(MPI_Comm comm) : precond(NULL)
{
@@ -4492,69 +4392,26 @@ void HypreGMRES::SetOperator(const Operator &op)
auxX.Delete(); auxX.Reset();
}
#if MFEM_HYPRE_VERSION >= 21500
HypreParVector HypreGMRES::GetResiduals() const
{
HYPRE_ParVector r;
HYPRE_ParCSRGMRESGetResidual(gmres_solver, &r);
return HypreParVector(r);
}
void HypreGMRES::GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p) const
{
auto r = GetResiduals();
ParNormlp(r, p, r.GetComm());
}
#endif
void HypreGMRES::SetTol(real_t tol)
{
HYPRE_GMRESSetTol(gmres_solver, tol);
}
real_t HypreGMRES::GetTol()const
{
HYPRE_Real tol;
HYPRE_GMRESGetTol(gmres_solver, &tol);
return tol;
}
void HypreGMRES::SetAbsTol(real_t tol)
{
HYPRE_GMRESSetAbsoluteTol(gmres_solver, tol);
}
real_t HypreGMRES::GetAbsTol() const
{
HYPRE_Real atol;
HYPRE_GMRESGetAbsoluteTol(gmres_solver, &atol);
return atol;
}
void HypreGMRES::SetMaxIter(int max_iter)
{
HYPRE_GMRESSetMaxIter(gmres_solver, max_iter);
}
int HypreGMRES::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_GMRESGetMaxIter(gmres_solver, &max_iter);
return max_iter;
}
void HypreGMRES::SetKDim(int k_dim)
{
HYPRE_GMRESSetKDim(gmres_solver, k_dim);
}
int HypreGMRES::GetKDim() const
{
HYPRE_Int k_dim;
HYPRE_GMRESGetKDim(gmres_solver, &k_dim);
return k_dim;
}
void HypreGMRES::SetLogging(int logging)
{
HYPRE_GMRESSetLogging(gmres_solver, logging);
@@ -4712,37 +4569,16 @@ void HypreFGMRES::SetTol(real_t tol)
HYPRE_ParCSRFlexGMRESSetTol(fgmres_solver, tol);
}
real_t HypreFGMRES::GetTol() const
{
HYPRE_Real tol;
HYPRE_FlexGMRESGetTol(fgmres_solver, &tol);
return tol;
}
void HypreFGMRES::SetMaxIter(int max_iter)
{
HYPRE_ParCSRFlexGMRESSetMaxIter(fgmres_solver, max_iter);
}
int HypreFGMRES::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_FlexGMRESGetMaxIter(fgmres_solver, &max_iter);
return max_iter;
}
void HypreFGMRES::SetKDim(int k_dim)
{
HYPRE_ParCSRFlexGMRESSetKDim(fgmres_solver, k_dim);
}
int HypreFGMRES::GetKDim() const
{
HYPRE_Int k_dim;
HYPRE_FlexGMRESGetKDim(fgmres_solver, &k_dim);
return k_dim;
}
void HypreFGMRES::SetLogging(int logging)
{
HYPRE_ParCSRFlexGMRESSetLogging(fgmres_solver, logging);
@@ -4839,21 +4675,6 @@ HypreFGMRES::~HypreFGMRES()
HYPRE_ParCSRFlexGMRESDestroy(fgmres_solver);
}
#if MFEM_HYPRE_VERSION >= 21500
HypreParVector HypreFGMRES::GetResiduals() const
{
HYPRE_ParVector r;
HYPRE_ParCSRFlexGMRESGetResidual(fgmres_solver, &r);
return HypreParVector(r);
}
void HypreFGMRES::GetFinalAbsResidualNorm(real_t &final_res_norm,
real_t p) const
{
auto r = GetResiduals();
ParNormlp(r, p, r.GetComm());
}
#endif
void HypreDiagScale::SetOperator(const Operator &op)
{
@@ -5342,13 +5163,6 @@ void HypreBoomerAMG::ResetAMGPrecond()
}
}
int HypreBoomerAMG::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_BoomerAMGGetMaxIter(amg_precond, &max_iter);
return max_iter;
}
void HypreBoomerAMG::SetOperator(const Operator &op)
{
const HypreParMatrix *new_A = dynamic_cast<const HypreParMatrix *>(&op);
+7 -107
View File
@@ -665,8 +665,6 @@ public:
void GetDiag(SparseMatrix &diag) const;
/// Get the local off-diagonal block. NOTE: 'offd' will not own any data.
void GetOffd(SparseMatrix &offd, HYPRE_BigInt* &cmap) const;
/// Get the global column mapping for the local off-diagonal block.
void GetOffdColMap(HYPRE_BigInt* &cmap, HYPRE_Int &num_cols) const;
/** @brief Get a single SparseMatrix containing all rows from this processor,
merged from the diagonal and off-diagonal blocks stored by the
HypreParMatrix. */
@@ -961,14 +959,6 @@ public:
const Memory<HYPRE_Int> &GetDiagMemoryJ() const { return mem_diag.J; }
const Memory<real_t> &GetDiagMemoryData() const { return mem_diag.data; }
Memory<HYPRE_Int> &GetOffdMemoryI() { return mem_offd.I; }
Memory<HYPRE_Int> &GetOffdMemoryJ() { return mem_offd.J; }
Memory<real_t> &GetOffdMemoryData() { return mem_offd.data; }
const Memory<HYPRE_Int> &GetOffdMemoryI() const { return mem_offd.I; }
const Memory<HYPRE_Int> &GetOffdMemoryJ() const { return mem_offd.J; }
const Memory<real_t> &GetOffdMemoryData() const { return mem_offd.data; }
/// @brief Prints the locally owned rows in parallel. The resulting files can
/// be read with Read_IJMatrix().
void Print(const std::string &fname, HYPRE_Int offi = 0,
@@ -1160,15 +1150,6 @@ public:
return HypreUsingGPU() ? l1Jacobi : l1GS;
}
/// Default solver settings:
/// type = DefaultType()
/// relax_times = 1
/// omega = 1.0
/// poly_order = 2
/// poly_fraction = 0.3
/// lambda = 0.5
/// mu = -0.5
/// taubin_iter = 40
HypreSmoother();
HypreSmoother(const HypreParMatrix &A_, int type = DefaultType(),
@@ -1178,28 +1159,20 @@ public:
/// Set the relaxation type and number of sweeps
void SetType(HypreSmoother::Type type, int relax_times = 1);
using Operator::GetType;
void GetType(HypreSmoother::Type &type, int &relax_times) const;
/// Set SOR-related parameters
void SetSOROptions(real_t relax_weight, real_t omega);
void GetSOROptions(real_t &relax_weight, real_t &omega) const;
/// Set parameters for polynomial smoothing
/** By default, 10 iterations of CG are used to estimate the eigenvalues.
Setting eig_est_cg_iter = 0 uses hypre's hypre_ParCSRMaxEigEstimate() instead. */
void SetPolyOptions(int poly_order, real_t poly_fraction,
int eig_est_cg_iter = 10);
void GetPolyOptions(int &poly_order, real_t &poly_fraction,
int &eig_est_cg_iter) const;
/// Set parameters for Taubin's lambda-mu method
void SetTaubinOptions(real_t lambda, real_t mu, int iter);
void GetTaubinOptions(real_t &lambda, real_t &mu, int &iter) const;
/// Convenience function for setting canonical windowing parameters
void SetWindowByName(const char* window_name);
/// Set parameters for windowing function for FIR smoother.
void SetWindowParameters(real_t a, real_t b, real_t c);
void GetWindowParameters(real_t &a, real_t &b, real_t &c) const;
/// Compute window and Chebyshev coefficients for given polynomial order.
void SetFIRCoefficients(real_t max_eig);
@@ -1207,15 +1180,12 @@ public:
/** By default, the l1-norms take their sign from the corresponding diagonal
entries in the associated matrix. */
void SetPositiveDiagonal(bool pos = true) { pos_l1_norms = pos; }
bool IsPositiveDiagonal() const { return pos_l1_norms; };
/** Explicitly indicate whether the linear system matrix A is symmetric. If A
is symmetric, the smoother will also be symmetric. In this case, calling
MultTranspose will be redirected to Mult. (This is also done if the
smoother is diagonal.) By default, A is assumed to be nonsymmetric. */
void SetOperatorSymmetry(bool is_sym) { A_is_symmetric = is_sym; }
/// @return true if the smoother assumes A is symmetric, false otherwise
bool IsOperatorSymmetric() const { return A_is_symmetric; }
/** Set/update the associated operator. Must be called after setting the
HypreSmoother type and options. */
@@ -1347,7 +1317,6 @@ public:
#endif
/// PCG solver in hypre
/// Defaults to (relative) tol=1e-6, atol=0, max_iter=1000
class HyprePCG : public HypreSolver
{
private:
@@ -1355,9 +1324,6 @@ private:
HypreSolver * precond;
/// Default PCG options
void SetDefaultOptions();
public:
HyprePCG(MPI_Comm comm);
@@ -1366,11 +1332,8 @@ public:
void SetOperator(const Operator &op) override;
void SetTol(real_t tol);
real_t GetTol() const;
void SetAbsTol(real_t atol);
real_t GetAbsTol() const;
void SetMaxIter(int max_iter);
int GetMaxIter() const;
void SetLogging(int logging);
void SetPrintLevel(int print_lvl);
@@ -1395,32 +1358,12 @@ public:
num_iterations = internal::to_int(num_it);
}
/// Gets the relative residual norm
void GetFinalResidualNorm(real_t &final_res_norm) const
{
HYPRE_ParCSRPCGGetFinalRelativeResidualNorm(pcg_solver,
&final_res_norm);
}
/// @param[in] use
/// Convergence criterion:
/// - when true: (r, r) < max(r_tol^2 (b, b), a_tol^2)
/// - when false: (r, A r) < max(r_tol^2 (b, A b), a_tol^2)
/// @sa HYPRE_PCGSetTwoNorm
void SetUseTwoNorm(bool use);
/// @sa HYPRE_PCGGetTwoNorm
bool GetUseTwoNorm() const;
#if MFEM_HYPRE_VERSION >= 21500
/// Gets the internal Hypre solver residual vector.
/// @sa HYPRE_ParCSRPCGGetResidual
HypreParVector GetResiduals() const;
/// Computes the absolute residual p-norm.
void GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p = 2) const;
#endif
/// The typecast to HYPRE_Solver returns the internal pcg_solver
operator HYPRE_Solver() const override { return pcg_solver; }
@@ -1438,8 +1381,7 @@ public:
virtual ~HyprePCG();
};
/// GMRES solver in hypre.
/// Defaults to k=50, (relative) tol=1e-6, atol=0, max_iter=100.
/// GMRES solver in hypre
class HypreGMRES : public HypreSolver
{
private:
@@ -1458,13 +1400,9 @@ public:
void SetOperator(const Operator &op) override;
void SetTol(real_t tol);
real_t GetTol() const;
void SetAbsTol(real_t tol);
real_t GetAbsTol() const;
void SetMaxIter(int max_iter);
int GetMaxIter() const;
void SetKDim(int dim);
int GetKDim() const;
void SetLogging(int logging);
void SetPrintLevel(int print_lvl);
@@ -1484,22 +1422,12 @@ public:
num_iterations = internal::to_int(num_it);
}
/// Gets the relative residual norm
void GetFinalResidualNorm(real_t &final_res_norm) const
{
HYPRE_ParCSRGMRESGetFinalRelativeResidualNorm(gmres_solver,
&final_res_norm);
}
#if MFEM_HYPRE_VERSION >= 21500
/// Gets the internal Hypre solver residual vector.
/// @sa HYPRE_ParCSRGMRESGetResidual
HypreParVector GetResiduals() const;
/// Computes the absolute residual p-norm.
void GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p = 2) const;
#endif
/// The typecast to HYPRE_Solver returns the internal gmres_solver
operator HYPRE_Solver() const override { return gmres_solver; }
@@ -1517,8 +1445,7 @@ public:
virtual ~HypreGMRES();
};
/// Flexible GMRES solver in hypre.
/// Defaults to k=50, (relative) tol=1e-6, max_iter=100.
/// Flexible GMRES solver in hypre
class HypreFGMRES : public HypreSolver
{
private:
@@ -1537,11 +1464,8 @@ public:
void SetOperator(const Operator &op) override;
void SetTol(real_t tol);
real_t GetTol() const;
void SetMaxIter(int max_iter);
int GetMaxIter() const;
void SetKDim(int dim);
int GetKDim() const;
void SetLogging(int logging);
void SetPrintLevel(int print_lvl);
@@ -1561,22 +1485,12 @@ public:
num_iterations = internal::to_int(num_it);
}
/// Gets the relative residual norm
void GetFinalResidualNorm(real_t &final_res_norm) const
{
HYPRE_ParCSRFlexGMRESGetFinalRelativeResidualNorm(fgmres_solver,
&final_res_norm);
}
#if MFEM_HYPRE_VERSION >= 21500
/// Gets the internal Hypre solver residual vector.
/// @sa HYPRE_ParCSRFlexGMRESGetResidual
HypreParVector GetResiduals() const;
/// Computes the absolute residual p-norm.
void GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p = 2) const;
#endif
/// The typecast to HYPRE_Solver returns the internal fgmres_solver
operator HYPRE_Solver() const override { return fgmres_solver; }
@@ -1632,8 +1546,7 @@ public:
virtual ~HypreDiagScale() { }
};
/// The ParaSails preconditioner in hypre.
/// See SetDefaultOptions() for default solver options.
/// The ParaSails preconditioner in hypre
class HypreParaSails : public HypreSolver
{
private:
@@ -1762,14 +1675,10 @@ public:
/**
@brief Wrapper for Hypre's native parallel ILU preconditioner.
Default parameters: ILU(k) factorization type, tol=0.0 (for use as a
preconditioner), fill level = 1 (for ILU(k)), reverse Cuthill-McKee (RCM)
re-ordering.
If you need to change this, or any other option, you can use the HYPRE_Solver
method to cast the object for use with Hypre's native functions. For example, if
want to use natural ordering rather than RCM reordering, you can use the
following approach:
The default ILU factorization type is ILU(k). If you need to change this, or
any other option, you can use the HYPRE_Solver method to cast the object for use
with Hypre's native functions. For example, if want to use natural ordering
rather than RCM reordering, you can use the following approach:
@code
mfem::HypreILU ilu();
@@ -1910,7 +1819,6 @@ public:
void SetMaxIter(int max_iter)
{ HYPRE_BoomerAMGSetMaxIter(amg_precond, max_iter); }
int GetMaxIter() const;
/// Expert option - consult hypre documentation/team
void SetMaxLevels(int max_levels)
@@ -1935,8 +1843,6 @@ public:
/// Expert option - consult hypre documentation/team
void SetRelaxType(int relax_type)
{ HYPRE_BoomerAMGSetRelaxType(amg_precond, relax_type); }
// not implemented in hypre
// int GetRelaxType() const;
/// Expert option - consult hypre documentation/team
void SetCycleType(int cycle_type)
@@ -2237,14 +2143,8 @@ public:
~HypreLOBPCG();
void SetTol(real_t tol);
// not implemented in HYPRE
// real_t GetTol() const;
void SetRelTol(real_t rel_tol);
// not implemented in HYPRE
// real_t GetRelTol() const;
void SetMaxIter(int max_iter);
// not implemented in HYPRE
// int GetMaxIter() const;
void SetPrintLevel(int logging);
void SetNumModes(int num_eigs) { nev = num_eigs; }
void SetPrecondUsageMode(int pcg_mode);
+6 -101
View File
@@ -10,7 +10,6 @@
// CONTRIBUTING.md for details.
#include "../general/communication.hpp"
#include "../general/forall.hpp"
#include "operator.hpp"
#include "ode.hpp"
@@ -185,23 +184,6 @@ void ODESolver::Init(TimeDependentOperator &f_)
mem_type = GetMemoryType(f_.GetMemoryClass());
}
void ODESolver::ComputeSlopeFromState(const real_t dt, const Vector &u,
Vector &k)
{
// k currently holds state u(t+dt),
// convert to slope k = du/dt ~= (u(t+dt)-u(t))/dt
const int usz = u.Size();
real_t fac = 1.0/dt;
auto d_u = u.Read();
auto d_k = k.ReadWrite();
mfem::forall(usz, [=] MFEM_HOST_DEVICE (int i)
{
d_k[i] -= d_u[i];
d_k[i] *= fac;
});
}
void ForwardEulerSolver::Init(TimeDependentOperator &f_)
{
ODESolver::Init(f_);
@@ -647,10 +629,6 @@ void AdamsMoultonSolver::Step(Vector &x, real_t &t, real_t &dt)
}
state.ShiftStages();
f->ImplicitSolve(a[0]*dt, x, state[0]);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a[0]*dt, x, state[0]);
}
x.Add(a[0]*dt, state[0]);
t += dt;
}
@@ -683,15 +661,7 @@ void BackwardEulerSolver::Step(Vector &x, real_t &t, real_t &dt)
{
f->SetTime(t + dt);
f->ImplicitSolve(dt, x, k); // solve for k: k = f(x + dt*k, t + dt)
if (f->ImplicitVarTypeIsState())
{
x = k; // x = u_{i+1}
}
else
{
x.Add(dt, k);
}
x.Add(dt, k);
t += dt;
}
@@ -706,16 +676,7 @@ void ImplicitMidpointSolver::Step(Vector &x, real_t &t, real_t &dt)
{
f->SetTime(t + dt/2);
f->ImplicitSolve(dt/2, x, k);
if (f->ImplicitVarTypeIsState())
{
x.Neg();
x.Add(2.0, k);
}
else
{
x.Add(dt, k);
}
x.Add(dt, k);
t += dt;
}
@@ -757,19 +718,11 @@ void SDIRK23Solver::Step(Vector &x, real_t &t, real_t &dt)
// note: with gamma_opt=3, both solve are outside [t,t+dt] since a>1
f->SetTime(t + gamma*dt);
f->ImplicitSolve(gamma*dt, x, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(gamma*dt, x, k);
}
add(x, (1.-2.*gamma)*dt, k, y); // y = x + (1-2*gamma)*dt*k
x.Add(dt/2, k);
f->SetTime(t + (1.-gamma)*dt);
f->ImplicitSolve(gamma*dt, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(gamma*dt, y, k);
}
x.Add(dt/2, k);
t += dt;
}
@@ -796,29 +749,17 @@ void SDIRK34Solver::Step(Vector &x, real_t &t, real_t &dt)
f->SetTime(t + a*dt);
f->ImplicitSolve(a*dt, x, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, x, k);
}
add(x, (0.5-a)*dt, k, y);
add(x, (2.*a)*dt, k, z);
x.Add(b*dt, k);
f->SetTime(t + dt/2);
f->ImplicitSolve(a*dt, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, y, k);
}
z.Add((1.-4.*a)*dt, k);
x.Add((1.-2.*b)*dt, k);
f->SetTime(t + (1.-a)*dt);
f->ImplicitSolve(a*dt, z, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, z, k);
}
x.Add(b*dt, k);
t += dt;
}
@@ -844,27 +785,15 @@ void SDIRK33Solver::Step(Vector &x, real_t &t, real_t &dt)
f->SetTime(t + a*dt);
f->ImplicitSolve(a*dt, x, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, x, k);
}
add(x, (c-a)*dt, k, y);
x.Add(b*dt, k);
f->SetTime(t + c*dt);
f->ImplicitSolve(a*dt, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, y, k);
}
x.Add((1.0-a-b)*dt, k);
f->SetTime(t + dt);
f->ImplicitSolve(a*dt, x, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, x, k);
}
x.Add(a*dt, k);
t += dt;
}
@@ -889,10 +818,6 @@ void TrapezoidalRuleSolver::Step(Vector &x, real_t &t, real_t &dt)
f->SetTime(t + dt);
f->ImplicitSolve(dt/2.0, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(0.5*dt, y, k);
}
x.Add(dt/2.0, k);
t += dt;
}
@@ -923,19 +848,11 @@ void ESDIRK32Solver::Step(Vector &x, real_t &t, real_t &dt)
f->SetTime(t + (2.0*a)*dt);
f->ImplicitSolve(a*dt, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, y, k);
}
z.Add(b*dt, k);
x.Add(b*dt, k);
f->SetTime(t + dt);
f->ImplicitSolve(a*dt, z, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, z, k);
}
x.Add(a*dt, k);
t += dt;
}
@@ -968,19 +885,11 @@ void ESDIRK33Solver::Step(Vector &x, real_t &t, real_t &dt)
f->SetTime(t + (2.0*a)*dt);
f->ImplicitSolve(a*dt, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, y, k);
}
z.Add(b*dt, k);
x.Add(b_2*dt, k);
f->SetTime(t + dt);
f->ImplicitSolve(a*dt, z, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(a*dt, z, k);
}
x.Add(b_3*dt, k);
t += dt;
}
@@ -1046,10 +955,6 @@ void GeneralizedAlphaSolver::Step(Vector &x, real_t &t, real_t &dt)
real_t dt_eff = (gamma*alpha_f/alpha_m)*dt;
f->SetTime(t + alpha_f*dt);
f->ImplicitSolve(dt_eff, y, k);
if (f->ImplicitVarTypeIsState())
{
ComputeSlopeFromState(dt_eff, y, k);
}
// Update x and xdot
x.Add((1.0 - (gamma/alpha_m))*dt, state[0]);
@@ -1211,8 +1116,8 @@ void SecondOrderODESolver::EulerStep(Vector &x, Vector &dxdt, real_t &t,
f->SetTime(t + dt);
f->ImplicitSolve(0.5*dt*dt, dt, x, dxdt, state[0]);
x.Add(0.5*dt*dt, state[0]);
dxdt.Add(dt, state[0]);
x .Add(0.5*dt*dt, state[0]);
dxdt.Add(dt, state[0]);
t += dt;
}
@@ -1298,8 +1203,8 @@ void NewmarkSolver::Step(Vector &x, Vector &dxdt, real_t &t, real_t &dt)
f->SetTime(t + dt);
f->ImplicitSolve(fac3*dt*dt, fac4*dt, x, dxdt, state[0]);
x.Add(fac3*dt*dt, state[0]);
dxdt.Add(fac4*dt, state[0]);
x .Add(fac3*dt*dt, state[0]);
dxdt.Add(fac4*dt, state[0]);
t += dt;
}
-76
View File
@@ -120,7 +120,6 @@ public:
class ODESolver
{
protected:
using ImplicitVariableType = TimeDependentOperator::ImplicitVariableType;
/// Pointer to the associated TimeDependentOperator.
TimeDependentOperator *f; // f(.,t) : R^n --> R^n
MemoryType mem_type;
@@ -193,22 +192,6 @@ public:
/// Returns how many State vectors the ODE requires
virtual int GetStateSize() { return 0; };
///@brief Returns @a true if the ODESolver supports the given
/// #ImplicitVariableType, @a var, and returns @a false otherwise.
///@note Should be overriden in ODESolver that calls TimeDependentOperator::ImplicitSolve().
virtual bool SupportsImplicitVariableType(ImplicitVariableType var) const
{ return false; };
/** @brief Compute the finite-difference slope, @a $\frac{du}{dt} \approx \frac{u(t+dt)-u(t)}{dt}$,
* and store it in @a k.
* @param [in] dt Finite difference step size.
* @param [in] u state vector, @a u(t).
* @param [in,out] k On input, @a k contains the state vector, @a u( @a t+ @a dt).
* On output, @a k contains the computed slope, @a du/dt.
* */
virtual void ComputeSlopeFromState(const real_t dt, const Vector &u,
Vector &k);
// Help info for ODESolver options
static MFEM_EXPORT std::string ExplicitTypes;
static MFEM_EXPORT std::string ImplicitTypes;
@@ -378,12 +361,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -397,12 +374,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -424,12 +395,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -444,12 +409,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -464,12 +423,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -484,12 +437,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -504,12 +451,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -524,12 +465,6 @@ public:
void Init(TimeDependentOperator &f_) override;
void Step(Vector &x, real_t &t, real_t &dt) override;
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -555,12 +490,6 @@ public:
ODEStateData& GetState() override { return state; }
const ODEStateData& GetState() const override { return state; }
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
@@ -677,11 +606,6 @@ public:
ODEStateData& GetState() override { return state; }
const ODEStateData& GetState() const override { return state; }
bool SupportsImplicitVariableType(ImplicitVariableType var) const override
{
return (var == ImplicitVariableType::STATE ||
var == ImplicitVariableType::SLOPE);
}
};
/** A 1-stage, 2nd order AM method. */
+3 -37
View File
@@ -381,24 +381,11 @@ public:
ADDITIVE_TERM_2
};
/** Used to specify the variable being returned by ImplicitSolve(). This can
* be queried by ODESolver to identify the variable being solved for.
* @warning Not all ODESolver may support all options. See ODESolver::SupportsImplicitVariableType() */
enum ImplicitVariableType
{
SLOPE, ///< stage slope, $k = \frac{du}{dt}$.
STATE ///< stage state, $k = u$.
};
protected:
real_t t; ///< Current time.
Type type; /**< @brief Describes the form of the TimeDependentOperator, see
the documentation of #Type. */
EvalMode eval_mode; ///< Current evaluation mode.
ImplicitVariableType implicit_variable_type =
ImplicitVariableType::SLOPE; /**< @brief
Return variable for
ImplicitSolve()*/
public:
/** @brief Construct a "square" TimeDependentOperator (u,t) -> k(u,t), where
@@ -442,24 +429,6 @@ public:
virtual void SetEvalMode(const EvalMode new_eval_mode)
{ eval_mode = new_eval_mode; }
/** @brief Sets the #ImplicitVariableType for ImplicitSolve()*/
virtual void SetImplicitVariableType(const ImplicitVariableType variable_type)
{ implicit_variable_type = variable_type; }
/** @brief Returns the #ImplicitVariableType for ImplicitSolve(). */
virtual ImplicitVariableType GetImplicitVariableType() const
{ return implicit_variable_type; }
/** @brief Returns @a true if implicit variable is #STATE and @a false otherwise.
* Used by ODESolver to identify the stage variable returned by ImplicitSolve() */
virtual bool ImplicitVarTypeIsState() const
{ return (implicit_variable_type == ImplicitVariableType::STATE); }
/** @brief Returns @a true if implicit variable is #SLOPE and @a false otherwise.
* Used by ODESolver to identify the stage variable returned by ImplicitSolve() */
virtual bool ImplicitVarTypeIsSlope() const
{ return (implicit_variable_type == ImplicitVariableType::SLOPE); }
/** @brief Perform the action of the explicit part of the operator, G:
@a v = G(@a u, t) where t is the current time.
@@ -493,8 +462,7 @@ public:
/** @brief Solve for the unknown @a k, at the current time t, the following
equation:
1. $F( u + \gamma k, k, t) = G( u + \gamma k, t)$, if solving for stage-slope (default)
2. $F( u , \frac{k-u}{\gamma}, t) = G(k, t)$, if solving for stage-state
F(@a u + @a gamma @a k, @a k, t) = G(@a u + @a gamma @a k, t).
For solving an ordinary differential equation of the form
$ M \frac{dy}{dt} = g(y,t) $, recall that F and G can be defined in
@@ -504,9 +472,8 @@ public:
2. F(u,k,t) = M k and G(u,t) = g(u,t)
3. F(u,k,t) = M k - g(u,t) and G(u,t) = 0
Regardless of the choice of F and G, this function should solve for @a k:
- $~Mk = g( u + \gamma k, t)~$, if solving for stage-slope.
- $~Mk = \gamma g(k, t) + Mu~$, if solving for stage-state
Regardless of the choice of F and G, this function should solve for @a k
in M @a k = g(@a u + @a gamma @a k, t).
To see how @a k can be useful, consider the backward Euler method defined
by $ y(t + \Delta t) = y(t) + \Delta t k_0 $ where
@@ -524,7 +491,6 @@ public:
$ y(t) + \Delta t \sum_{j=1}^{i-1} a_{ij} k_j $ and @a gamma set to
$ a_{ii} \Delta t $, for $ k_i $. For example, see class SDIRK33Solver.
See SetImplicitVariableType() to switch between different variable modes.
If not re-implemented, this method simply generates an error. */
virtual void ImplicitSolve(const real_t gamma, const Vector &u, Vector &k);
-13
View File
@@ -3639,20 +3639,12 @@ void PetscBDDCSolver::BDDCSolverConstructor(const PetscBDDCSolverParams &opts)
// make sure ess/nat_dof have been collectively set
PetscBool lpr = PETSC_FALSE,pr;
if (opts.ess_dof) { lpr = PETSC_TRUE; }
#if PETSC_VERSION_LT(3,24,0)
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPIU_BOOL,MPI_LOR,comm);
#else
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPI_C_BOOL,MPI_LOR,comm);
#endif
CCHKERRQ(comm,mpiierr);
MFEM_VERIFY(lpr == pr,"ess_dof should be collectively set");
lpr = PETSC_FALSE;
if (opts.nat_dof) { lpr = PETSC_TRUE; }
#if PETSC_VERSION_LT(3,24,0)
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPIU_BOOL,MPI_LOR,comm);
#else
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPI_C_BOOL,MPI_LOR,comm);
#endif
CCHKERRQ(comm,mpiierr);
MFEM_VERIFY(lpr == pr,"nat_dof should be collectively set");
// make sure fields have been collectively set
@@ -4066,13 +4058,8 @@ void PetscNonlinearSolver::SetOperator(const Operator &op)
ls = (PetscBool)(height == op.Height() && width == op.Width() &&
(void*)&op == fctx &&
(void*)&op == jctx);
#if PETSC_VERSION_LT(3,24,0)
mpiierr = MPI_Allreduce(&ls,&gs,1,MPIU_BOOL,MPI_LAND,
PetscObjectComm((PetscObject)snes));
#else
mpiierr = MPI_Allreduce(&ls,&gs,1,MPI_C_BOOL,MPI_LAND,
PetscObjectComm((PetscObject)snes));
#endif
CCHKERRQ(PetscObjectComm((PetscObject)snes),mpiierr);
if (!gs)
{
-5
View File
@@ -1066,11 +1066,6 @@ void SparseMatrix::BooleanMultTranspose(const Array<int> &x,
y.SetSize(Width());
y = 0;
HostReadI();
HostReadJ();
x.HostRead();
y.HostReadWrite();
for (int i = 0; i < Height(); i++)
{
if (x[i])
+18 -65
View File
@@ -23,31 +23,15 @@ namespace mfem
void SparseSmoother::SetOperator(const Operator &a)
{
oper = dynamic_cast<const SparseMatrix*>(&a);
MFEM_VERIFY(oper != nullptr, "Operator must be a SparseMatrix");
if (oper == NULL)
{
mfem_error("SparseSmoother::SetOperator : not a SparseMatrix!");
}
height = oper->Height();
width = oper->Width();
At.reset();
oper_T = nullptr;
}
void SparseSmoother::EnsureTranspose() const
{
if (oper_T) { return; }
const real_t tol = 1e-14;
if (oper->IsSymmetric() > tol * oper->MaxNorm())
{
At.reset(Transpose(*oper));
oper_T = At.get();
}
else
{
At.reset();
oper_T = oper;
}
}
/// Matrix vector multiplication with GS Smoother.
void GSSmoother::Mult(const Vector &x, Vector &y) const
{
if (!iterative_mode)
@@ -67,33 +51,21 @@ void GSSmoother::Mult(const Vector &x, Vector &y) const
}
}
void GSSmoother::MultTranspose(const Vector &x, Vector &y) const
/// Create the Jacobi smoother.
DSmoother::DSmoother(const SparseMatrix &a, int t, real_t s, int it)
: SparseSmoother(a)
{
EnsureTranspose();
if (!iterative_mode)
{
y = 0.0;
}
for (int i = 0; i < iterations; i++)
{
if (type != 1)
{
oper_T->Gauss_Seidel_forw(x, y);
}
if (type != 2)
{
oper_T->Gauss_Seidel_back(x, y);
}
}
type = t;
scale = s;
iterations = it;
}
void DSmoother::Mult_(const SparseMatrix &A, const Vector &x, Vector &y) const
/// Matrix vector multiplication with Jacobi smoother.
void DSmoother::Mult(const Vector &x, Vector &y) const
{
if (!iterative_mode && type == 0 && iterations == 1)
{
A.DiagScale(x, y, scale, use_abs_diag);
oper->DiagScale(x, y, scale, use_abs_diag);
return;
}
@@ -118,41 +90,22 @@ void DSmoother::Mult_(const SparseMatrix &A, const Vector &x, Vector &y) const
{
if (type == 0)
{
A.Jacobi(x, *p, *r, scale, use_abs_diag);
oper->Jacobi(x, *p, *r, scale, use_abs_diag);
}
else if (type == 1)
{
A.Jacobi2(x, *p, *r, scale);
oper->Jacobi2(x, *p, *r, scale);
}
else if (type == 2)
{
A.Jacobi3(x, *p, *r, scale);
oper->Jacobi3(x, *p, *r, scale);
}
else
{
MFEM_ABORT("Invalid type.");
mfem_error("DSmoother::Mult wrong type");
}
Swap<Vector*>(r, p);
}
}
void DSmoother::Mult(const Vector &x, Vector &y) const
{
Mult_(*oper, x, y);
}
void DSmoother::MultTranspose(const Vector &x, Vector &y) const
{
if (iterations == 1 && !iterative_mode)
{
Mult_(*oper, x, y);
return;
}
EnsureTranspose();
MFEM_VERIFY(type == 0 || !At, "l1 or lumped Jacobi transpose not implemented"
" for non-symmetric matrices");
Mult_(*oper_T, x, y);
}
}
+25 -117
View File
@@ -15,159 +15,67 @@
#include "../config/config.hpp"
#include "sparsemat.hpp"
#include <memory>
namespace mfem
{
/// Abstract base class for smoothers created from a SparseMatrix.
class SparseSmoother : public MatrixInverse
{
protected:
const SparseMatrix *oper = nullptr; ///< The underlying matrix.
/// Pointer to the transpose of the underlying matrix. If the matrix is
/// symmetric, this will be the same as @a oper. If the matrix is not
/// symmetric, the transpose will be formed and stored in @a At. The
/// transpose will only be formed if MultTranspose() is called.
mutable const SparseMatrix *oper_T = nullptr;
mutable std::unique_ptr<SparseMatrix> At; ///< Transpose of A, if needed.
void EnsureTranspose() const; ///< Ensure that the transpose is set.
const SparseMatrix *oper;
public:
SparseSmoother() = default;
SparseSmoother() { oper = NULL; }
SparseSmoother(const SparseMatrix &a) { SetOperator(a); }
SparseSmoother(const SparseMatrix &a)
: MatrixInverse(a) { oper = &a; }
/// Sets the underlying matrix. @a a must be a SparseMatrix.
void SetOperator(const Operator &a) override;
};
/// Gauss-Seidel smoother of a sparse matrix.
/// Data type for Gauss-Seidel smoother of sparse matrix
class GSSmoother : public SparseSmoother
{
public:
enum GSType
{
SYMMETRIC, ///< Forward Gauss-Seidel, then backward.
FORWARD, ///< Forward Gauss-Seidel ($L^{-1}$).
BACKWARD ///< Backward Gauss-Seidel ($U^{-1}$).
};
protected:
GSType type; ///< Type of Gauss-Seidel, see GSSmoother::GSType.
int iterations; ///< Number of stationary iterations.
int type; // 0, 1, 2 - symmetric, forward, backward
int iterations;
public:
/// @brief Create a Gauss-Seidel smoother. SetOperator() will need to be
/// called with a SparseMatrix before first use.
///
/// @param[in] t Type of GS smoother (see GSSmoother::GSType)
/// @param[in] it Number of stationary iterations to perform
GSSmoother(GSType t = SYMMETRIC, int it = 1) { type = t; iterations = it; }
/// Create GSSmoother.
GSSmoother(int t = 0, int it = 1) { type = t; iterations = it; }
/// @brief Create a Jacobi smoother using the SparseMatrix @a a.
///
/// @param[in] a The underlying SparseMatrix
/// @param[in] t Type of GS smoother (see GSSmoother::GSType)
/// @param[in] it Number of stationary iterations to perform
GSSmoother(const SparseMatrix &a, GSType t = SYMMETRIC, int it = 1)
: GSSmoother(t, it) { SetOperator(a); }
/// Create GSSmoother.
GSSmoother(const SparseMatrix &a, int t = 0, int it = 1)
: SparseSmoother(a) { type = t; iterations = it; }
/// Same as GSSmoother(GSType,int), for backwards compatibility.
GSSmoother(int t, int it = 1) : GSSmoother(GSType(t), it) { }
/// @brief Same as GSSmoother(const SparseMatrix&,GSType,int), for
/// backwards compatibility.
GSSmoother(const SparseMatrix &a, int t, int it = 1)
: GSSmoother(a, GSType(t), it) { }
/// @brief Application of the Gauss-Seidel smoother.
///
/// Applies a stationary Gauss-Seidel iteration. If Solver::iterative_mode is
/// true, then @a y is used as the initial guess, and Gauss-Seidel is applied
/// to the residual $x - Ay$.
/// Matrix vector multiplication with GS Smoother.
void Mult(const Vector &x, Vector &y) const override;
/// Application of the transpose of the Gauss-Seidel smoother.
void MultTranspose(const Vector &x, Vector &y) const override;
};
/// Jacobi-type diagonal smoother of a sparse matrix.
/// Data type for scaled Jacobi-type smoother of sparse matrix
class DSmoother : public SparseSmoother
{
public:
enum JacobiType
{
JACOBI, ///< Scale by the diagonal of the matrix.
L1_JACOBI, ///< Scale by the l1-norm of the rows.
LUMPED_JACOBI ///< Scale by the sum of the rows.
};
protected:
JacobiType type; ///< Type of diagonal scaling, see DSmoother::JacobiType.
real_t scale; ///< Scaling (damping) factor.
int iterations; ///< Number of stationary iterations to perform.
/// @brief Uses abs values of the diagonal entries. Relevant only with type
/// JacobiType::JACOBI.
int type; // 0, 1, 2 - scaled Jacobi, scaled l1-Jacobi, scaled lumped-Jacobi
real_t scale;
int iterations;
/// Uses abs values of the diagonal entries. Relevant only when type = 0.
bool use_abs_diag = false;
mutable Vector z; ///< Temporary work vector.
/// Apply the Jacobi smoother (used internally by Mult() and MultTranspose())
void Mult_(const SparseMatrix &A, const Vector &x, Vector &y) const;
mutable Vector z;
public:
/// @brief Create a Jacobi smoother. SetOperator() will need to be called
/// with a SparseMatrix before first use.
///
/// @param[in] t Type of Jacobi smoother (see DSmoother::JacobiType)
/// @param[in] s Scaling factor
/// @param[in] it Number of stationary iterations to perform
DSmoother(JacobiType t = JACOBI, real_t s = 1., int it = 1)
/// Create Jacobi smoother.
DSmoother(int t = 0, real_t s = 1., int it = 1)
{ type = t; scale = s; iterations = it; }
/// @brief Create a Jacobi smoother using the SparseMatrix @a a.
///
/// @param[in] a The underlying SparseMatrix
/// @param[in] t Type of Jacobi smoother (see DSmoother::JacobiType)
/// @param[in] s Scaling factor
/// @param[in] it Number of stationary iterations to perform
DSmoother(const SparseMatrix &a, JacobiType t = JACOBI, real_t s = 1.,
int it = 1) : DSmoother(t, s, it) { SetOperator(a); }
/// Create Jacobi smoother.
DSmoother(const SparseMatrix &a, int t = 0, real_t s = 1., int it = 1);
/// @brief Same as DSmoother(JacobiType,real_t,int), for backwards compatbility.
DSmoother(int t, real_t s = 1., int it = 1)
: DSmoother(JacobiType(t), s, it) { }
/// @brief Same as DSmoother(const SparseMatrix&,JacobiType,real_t,int), for
/// backwards compatbility.
DSmoother(const SparseMatrix &a, int t, real_t s = 1., int it = 1)
: DSmoother(a, JacobiType(t), s, it) { }
/// @brief Replace diagonal entries with their absolute values. Relevant only
/// with JacobiType::JACOBI.
/// Replace diag entries with their abs values. Relevant only when type = 0.
void SetPositiveDiagonal(bool pos_diag = true) { use_abs_diag = pos_diag; }
/// @brief Apply the Jacobi smoother.
///
/// Applies a stationary iteration with diagonal scaling. If
/// Solver::iterative_mode is true, then @a y is used as the initial guess
/// (and the diagonal scaling is applied to the residual $x - Ay$, giving
/// $D^{-1}(x - Ay)$).
///
/// By default, Solver::iterative_mode is false and only one iteration is
/// performed, corresponding to $y = D^{-1}x$.
/// Matrix vector multiplication with Jacobi smoother.
void Mult(const Vector &x, Vector &y) const override;
/// @brief Apply the transpose of the Jacobi smoother.
///
/// If the underlying matrix is symmetric, or if only one iteration is
/// performed with zero initial guess (Solver::iterative_mode is false), then
/// this is the same as Mult(). For non-symmetric matrices with iteration
/// count greater than one, only JacobiType::JACOBI is supported.
void MultTranspose(const Vector &x, Vector &y) const override;
};
}
+1 -12
View File
@@ -363,19 +363,14 @@ void SuperLUSolver::Init(MPI_Comm comm)
// Set default options:
// options.Fact = DOFACT;
// options.Equil = YES;
// options.ParSymbFact = NO;
// options.ColPerm = METIS_AT_PLUS_A;
// options.RowPerm = LargeDiag_MC64;
// options.ReplaceTinyPivot = NO;
// options.IterRefine = SLU_DOUBLE;
// options.Trans = NOTRANS;
// options.IterRefine = SLU_DOUBLE;
// options.SolveInitialized = NO;
// options.RefineInitialized = NO;
// options.PrintStat = YES;
// options.lookahead_etree = NO;
// options.num_lookaheads = 10;
// options.superlu_acc_offload = 1;
// options.SymPattern = NO;
superlu_dist_options_t *options = (superlu_dist_options_t *)optionsPtr_;
set_default_options_dist(options);
#if SUPERLU_DIST_MAJOR_VERSION > 7 || \
@@ -477,12 +472,6 @@ void SuperLUSolver::SetFact(superlu::Fact fact)
options->Fact = opt;
}
void SuperLUSolver::SetDeviceOffload(bool offload)
{
superlu_dist_options_t *options = (superlu_dist_options_t *)optionsPtr_;
options->superlu_acc_offload = offload;
}
void SuperLUSolver::SetOperator(const Operator &op)
{
// Verify that we have a compatible operator
+1 -6
View File
@@ -250,8 +250,7 @@ public:
work (default false) */
void SetSymmetricPattern(bool sym);
/** @brief Specify whether to perform parallel symbolic factorization
(default false)
/** @brief Specify whether to perform parallel symbolic factorization.
@note If true SuperLU will use superlu::PARMETIS for the Column
Permutation regardless of the setting */
void SetParSymbFact(bool par);
@@ -264,10 +263,6 @@ public:
superlu::FACTORED*/
void SetFact(superlu::Fact fact);
/** @brief Specify whether to offload numerical factorization onto the device
(default true if SuperLU_DIST has been compiled with GPU support) */
void SetDeviceOffload(bool offload);
// Processor grid for SuperLU_DIST.
const int nprow_, npcol_, npdep_;
+1
View File
@@ -794,6 +794,7 @@ status info:
$(info MFEM_MPI_NP = $(MFEM_MPI_NP))
@true
ASTYLE_BIN = astyle
ASTYLE = $(ASTYLE_BIN) --options=$(SRC)config/mfem.astylerc
ASTYLE_VER = "Artistic Style Version 3.1"
FORMAT_FILES = $(foreach dir,$(DIRS) $(EM_DIRS) config,$(dir)/*.?pp)
+2 -2
View File
@@ -113,13 +113,13 @@ AttributeSets::GetAttributeSetMarker(const std::string & set_name) const
Array<int> AttributeSets::AttrToMarker(int max_attr, const Array<int> &attrs)
{
MFEM_VERIFY(attrs.Min() >= 1, "Found attribute less than one")
MFEM_ASSERT(attrs.Max() <= max_attr, "Found attribute greater than max_attr")
MFEM_ASSERT(attrs.Max() <= max_attr, "Invalid attribute number present.");
Array<int> marker(max_attr);
marker = 0;
for (auto const &attr : attrs)
{
MFEM_VERIFY(attr > 0, "Attribute number less than one!");
marker[attr-1] = 1;
}
return marker;
+14 -430
View File
@@ -36,7 +36,6 @@
#include <numeric>
#include <unordered_map>
#include <unordered_set>
#include <list>
// Include the METIS header, if using version 5. If using METIS 4, the needed
// declarations are inlined below, i.e. no header is needed.
@@ -4773,12 +4772,12 @@ Mesh::Mesh(real_t *vertices_, int num_vertices,
FinalizeTopology();
}
Mesh::Mesh(const NURBSExtension& ext)
Mesh::Mesh( const NURBSExtension& ext )
: attribute_sets(attributes), bdr_attribute_sets(bdr_attributes)
{
SetEmpty();
/// make an internal copy of the NURBSExtension
NURBSext = new NURBSExtension(ext);
NURBSext = new NURBSExtension( ext );
Dim = NURBSext->Dimension();
NumOfVertices = NURBSext->GetNV();
@@ -4792,12 +4791,11 @@ Mesh::Mesh(const NURBSExtension& ext)
if (NURBSext->HavePatches())
{
NURBSFECollection *fec = new NURBSFECollection(NURBSext->GetOrder());
const int vdim = NURBSext->GetPatchSpaceDimension();
FiniteElementSpace *fes = new FiniteElementSpace(this, fec, vdim,
FiniteElementSpace *fes = new FiniteElementSpace(this, fec, Dim,
Ordering::byVDIM);
Nodes = new GridFunction(fes);
Nodes->MakeOwner(fec);
NURBSext->SetCoordsFromPatches(*Nodes, vdim);
NURBSext->SetCoordsFromPatches(*Nodes);
own_nodes = 1;
spaceDim = Nodes->VectorDim();
for (int i = 0; i < spaceDim; i++)
@@ -6411,7 +6409,7 @@ void Mesh::UpdateNURBS()
NURBSext->SetKnotsFromPatches();
Dim = NURBSext->Dimension();
spaceDim = Nodes->FESpace()->GetVDim();
spaceDim = Dim;
if (NumOfElements != NURBSext->GetNE())
{
@@ -6436,8 +6434,7 @@ void Mesh::UpdateNURBS()
Nodes->FESpace()->Update();
Nodes->Update();
NodesUpdated();
const int vdim = Nodes->FESpace()->GetVDim();
NURBSext->SetCoordsFromPatches(*Nodes, vdim);
NURBSext->SetCoordsFromPatches(*Nodes);
if (NumOfVertices != NURBSext->GetNV())
{
@@ -6540,8 +6537,6 @@ void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_ukv)
Array<int> ukv_to_rpkv;
GetEdgeToUniqueKnotvector(edge_to_ukv, ukv_to_rpkv);
}
CorrectPatchTopoOrientations(edge_to_ukv);
}
void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
@@ -6552,9 +6547,9 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
const int NPKV = NP * dim; // number of patch knotvectors
constexpr int notset = -9999999;
// Sign convention
auto flipSign = [](int i) { return -1 - i; };
auto unSign = [](int i) { return (i < 0) ? -1 - i : i; };
// Local edge index -> dimension convention
auto sign = [](int i) { return -1 - i; };
auto unsign = [](int i) { return (i < 0) ? -1 - i : i; };
// Edge index -> dimension convention
auto edge_to_dim = [](int i) { return (i < 8) ? ((i & 1) ? 1 : 0) : 2; };
Array<int> v(2); // vertices of an edge
@@ -6569,7 +6564,7 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
{
GetElementVertices(i, v);
// Sign is based on the edge's vertex indices
edge_to_ukv[i] = (v[1] > v[0]) ? i : flipSign(i);
edge_to_ukv[i] = (v[1] > v[0]) ? i : sign(i);
ukv_to_rpkv[i] = i;
}
return;
@@ -6619,14 +6614,14 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
// We've set this edge already - link this index to it
if (edge_to_pkv[edge] != notset)
{
const int pkv_other = unSign(edge_to_pkv[edge]);
const int pkv_other = unsign(edge_to_pkv[edge]);
unite(pkv, pkv_other);
}
else
{
GetEdgeVertices(edge, v);
// Sign is based on the edge's vertex indices
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : flipSign(pkv);
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : sign(pkv);
}
}
}
@@ -6653,255 +6648,11 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
edge_to_ukv.SetSize(NumOfEdges);
for (int i = 0; i < NumOfEdges; i++)
{
const int pkv = unSign(edge_to_pkv[i]);
const int pkv = unsign(edge_to_pkv[i]);
const int rpkv = pkv_to_rpkv[pkv];
const int ukv = rpkv_to_ukv[rpkv];
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? flipSign(ukv) : ukv;
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? sign(ukv) : ukv;
}
CorrectPatchTopoOrientations(edge_to_ukv);
}
void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
{
const int dim = Dimension(); // Topological (not physical) dimension
if (dim == 1) { return; }
// Sign convention
auto flipSign = [](int i) { return -1 - i; };
const Table *face2elem = GetFaceToElementTable();
Array<int> pfaces, orient;
Array<int> fe, feo;
// Finds elements sharing a face containing knotvector kv.
auto faceNeighbors = [&](int p, int kv, std::unordered_set<int> &nghb)
{
if (dim == 2) { GetElementEdges(p, pfaces, orient); }
else { GetElementFaces(p, pfaces, orient); }
for (auto face : pfaces)
{
// Check whether this face contains kv.
GetFaceEdges(face, fe, feo);
bool hasKV = false;
for (auto e : fe)
{
const int skv = edge_to_ukv[e];
if (skv == kv || flipSign(skv) == kv) { hasKV = true; }
}
if (hasKV)
{
Array<int> row;
face2elem->GetRow(face, row);
for (auto elem : row) { nghb.insert(elem); }
}
}
};
std::vector<std::vector<int>> dir_edges;
if (dim == 2)
{
dir_edges =
{
{0,2},
{1,3}
};
}
else
{
dir_edges =
{
{0,2,4,6},
{1,3,5,7},
{8,9,10,11}
};
}
Array<int> ukvs((dim==2) ? 4 : 12);
Array<int> pe, oe;
bool initKV = false;
auto setPatchDirections = [&](int p, int kv, Array<bool> &edgeSet,
std::unordered_set<int> &visited)
{
// Edges and orientations for this patch
GetElementEdges(p, pe, oe);
// Get the signed unique knot vector indices
for (int i = 0; i < pe.Size(); i++)
{
ukvs[i] = edge_to_ukv[pe[i]];
ukvs[i] = (oe[i] < 0) ? flipSign(ukvs[i]) : ukvs[i];
}
// Find the direction with this kv.
int thisDir = -1;
for (int d=0; d<dim; ++d) // Loop over directions.
{
const int skv = edge_to_ukv[pe[dir_edges[d][0]]];
if (skv == kv || flipSign(skv) == kv)
{
thisDir = d;
}
}
MFEM_VERIFY(thisDir >= 0, "");
// For this direction, find any edge already set. If no edge is set, we
// arbitrarily take the first.
int ref_edge0 = dir_edges[thisDir][0];
for (auto ref_edge : dir_edges[thisDir])
{
const int edge = pe[ref_edge];
if (edgeSet[edge])
{
ref_edge0 = ref_edge;
}
}
if (initKV && !edgeSet[pe[ref_edge0]])
{
visited.erase(p);
return false; // There is no set edge in this direction on this patch.
}
initKV = true;
// Use ref_edge0 to set other edges in this direction.
edgeSet[pe[ref_edge0]] = true;
for (auto i : dir_edges[thisDir])
{
if (i == ref_edge0)
{
continue;
}
const int edge = pe[i];
if ((dim == 2 && ukvs[i] != flipSign(ukvs[ref_edge0])) ||
(dim == 3 && ukvs[i] == flipSign(ukvs[ref_edge0])))
{
// Flip the sign of this edge
MFEM_VERIFY(!edgeSet[edge], "");
edge_to_ukv[edge] = flipSign(edge_to_ukv[edge]);
}
edgeSet[edge] = true;
}
return true;
};
Array<bool> edgeSet(NumOfEdges); // Whether edge has orientation set
edgeSet = false;
std::unordered_set<int> unset; // Patches with an unset edge
for (int i=0; i<NumOfElements; ++i) { unset.insert(i); }
const int max_iter = 3 * NumOfElements;
for (int iter=0; iter<max_iter; ++iter)
{
// Iteratively choose an unset patch (meaning not all edges have
// orientation set), choose a knotvector index for which the corresponding
// edges on this patch are not set, and sweep over all patches containing
// this knotvector. The patch sweep is ordered, by maintaining an ordered
// list `nextPatches` set by finding face-neighbor patches of visited
// patches, where the common face contains the knotvector. When each patch
// is visited, the edge orientations are set consistently. This iteration
// terminates when all edges have been set on all patches.
std::list<int> nextPatches; // Next patches to visit, ordered
std::unordered_set<int> nextSet; // nextPatches as a set
std::unordered_set<int> visited; // Visit each patch only once
if (unset.size() == 0)
{
break;
}
const int p0 = *unset.begin();
nextPatches.push_back(p0); // Start from arbitrary unset patch
nextSet.insert(p0);
// Choose an arbitrary unset direction for the first patch.
GetElementEdges(p0, pe, oe);
int unsetDim = -1;
for (int d=0; d<dim; ++d) // Loop over dimensions.
{
if (!edgeSet[pe[dir_edges[d][0]]])
{
unsetDim = d;
}
}
if (unsetDim == -1)
{
unset.erase(p0);
continue;
}
const int kv_signed = edge_to_ukv[pe[dir_edges[unsetDim][0]]];
const int kv = kv_signed < 0 ? flipSign(kv_signed) : kv_signed;
MFEM_VERIFY(!edgeSet[pe[dir_edges[unsetDim][0]]], "");
initKV = false;
while (nextPatches.size() > 0)
{
const int p = nextPatches.front();
nextPatches.pop_front();
nextSet.erase(p);
visited.insert(p);
const bool somethingSet = setPatchDirections(p, kv, edgeSet, visited);
if (!somethingSet)
{
continue;
}
// Find neighbors of patch p sharing a conforming face, via face2elem.
std::unordered_set<int> neighbors;
faceNeighbors(p, kv, neighbors);
bool allSet = true;
GetElementEdges(p, pe, oe);
for (auto edge : pe)
{
if (!edgeSet[edge])
{
allSet = false;
}
}
if (allSet)
{
unset.erase(p);
}
// Add neighbors not done to nextPatches.
for (auto n : neighbors)
{
if (n != p && visited.count(n) == 0 && unset.count(n) > 0)
{
if (nextSet.count(n) == 0)
{
nextPatches.push_back(n);
nextSet.insert(n);
}
}
}
}
}
bool allSet = true;
for (auto eset : edgeSet)
{
if (!eset)
{
allSet = false;
}
}
MFEM_VERIFY(allSet && unset.size() == 0, "Some edge is not set");
delete face2elem;
}
void Mesh::LoadNonconformingPatchTopo(std::istream &input,
@@ -7836,17 +7587,6 @@ bool Mesh::IsMixedMesh() const
void Mesh::GetElementEdges(int i, Array<int> &edges, Array<int> &cor) const
{
if (Dim == 1)
{
// In 1D, elements are segments and can be treated as edges.
edges.SetSize(1);
cor.SetSize(1);
edges[0] = i;
const int *v = elements[i]->GetVertices();
cor[0] = (v[0] < v[1]) ? (1) : (-1);
return;
}
if (el_to_edge)
{
el_to_edge->GetRow(i, edges);
@@ -9823,8 +9563,6 @@ void Mesh::GetVertices(Vector &vert_coord) const
void Mesh::SetVertices(const Vector &vert_coord)
{
MFEM_VERIFY(vert_coord.Size() == spaceDim * NumOfVertices, "");
vertices.SetSize(NumOfVertices);
for (int i = 0, nv = vertices.Size(); i < nv; i++)
for (int j = 0; j < spaceDim; j++)
{
@@ -12402,38 +12140,6 @@ void Mesh::PrintTopoEdges(std::ostream &os, const Array<int> &e_to_k,
{
Array<int> vert;
// In 1D patch-topology NURBS meshes, knotvector orientation is stored in the
// file's `edges` section, but the topological 1D mesh has NumOfEdges == 0
// (its "faces" are vertices). When a valid edge->knotvector map is provided,
// print a pseudo-edge list derived from the 1D elements so external tools
// (e.g. VisIt) can consume the mapping.
if (Dim == 1 && NumOfEdges == 0 && e_to_k.Size() == NumOfElements)
{
const int ne = NumOfElements;
os << "\nedges\n" << ne << '\n';
for (int i = 0; i < ne; i++)
{
const int *v = elements[i]->GetVertices();
int v0 = v[0], v1 = v[1];
int ki = e_to_k[i];
const bool flip = (ki < 0); // desired output vertex order: descending
if (flip) { ki = -1 - ki; } // print the unsigned knotvector index
// Encode the sign of e_to_k in the vertex ordering, consistent with
// Mesh::LoadPatchTopo(): v0 > v1 => negative sign.
if ((v0 > v1) != flip) { std::swap(v0, v1); }
os << ki << ' ' << v0 << ' ' << v1 << '\n';
}
if (!vmap)
{
os << "\nvertices\n" << NumOfVertices << '\n';
}
return;
}
os << "\nedges\n" << NumOfEdges << '\n';
for (int i = 0; i < NumOfEdges; i++)
{
@@ -15746,128 +15452,6 @@ Mesh *Extrude2D(Mesh *mesh, const int nz, const real_t sz)
return mesh3d;
}
Mesh PartitionMPI(int dim, int mpi_cnt, int elem_per_mpi, bool print,
int &par_ref, Array<int> &partitioning)
{
MFEM_VERIFY(dim > 1, "Not implemented for 1D meshes.");
auto factor = [&](int N)
{
for (int i = static_cast<int>(sqrt(N)); i > 0; i--)
{ if (N % i == 0) { return i; } }
return 1;
};
par_ref = 0;
const int ref_factor = (dim == 2) ? 4 : 8;
// Elements per task before performing parallel refinements.
// This will be used to form the serial mesh.
int el0 = elem_per_mpi;
while (el0 % ref_factor == 0)
{
el0 /= ref_factor;
par_ref++;
}
// In the serial mesh we have:
// The number of MPI blocks is mpi_cnt = mp_x.mpy_y.mpy_z.
// The size of each MPI block is el0 = el0_x.el0_y.el0_z.
int mpi_x, mpi_y, mpi_z;
int el0_x, el0_y, el0_z;
if (dim == 2)
{
mpi_x = factor(mpi_cnt);
mpi_y = mpi_cnt / mpi_x;
// Switch order for better balance.
el0_y = factor(el0);
el0_x = el0 / el0_y;
}
else
{
mpi_x = factor(mpi_cnt);
mpi_y = factor(mpi_cnt / mpi_x);
mpi_z = mpi_cnt / mpi_x / mpi_y;
// Switch order for better balance.
el0_z = factor(el0);
el0_y = factor(el0 / el0_z);
el0_x = el0 / el0_y / el0_z;
}
if (print && dim == 2)
{
int elem_par_x = mpi_x * el0_x * pow(2, par_ref),
elem_par_y = mpi_y * el0_y * pow(2, par_ref);
mfem::out << "--- Mesh generation: \n";
mfem::out << "Par mesh: " << elem_par_x << " x " << elem_par_y
<< " (" << elem_par_x * elem_par_y << " elements)\n"
<< "Elem / task: "
<< el0_x * pow(2, par_ref) << " x "
<< el0_y * pow(2, par_ref)
<< " (" << el0_x * pow(2, 2*par_ref) * el0_y << " elements)\n"
<< "MPI blocks: " << mpi_x << " x " << mpi_y
<< " (" << mpi_x * mpi_y << " mpi tasks)\n" << "-\n"
<< "Serial mesh: "
<< mpi_x * el0_x << " x " << mpi_y * el0_y
<< " (" << mpi_x * el0_x * mpi_y * el0_y << " elements)\n"
<< "Elem / task: " << el0_x << " x " << el0_y << std::endl
<< "Par refine: " << par_ref << std::endl;
mfem::out << "--- \n";
}
if (print && dim == 3)
{
int elem_par_x = mpi_x * el0_x * pow(2, par_ref),
elem_par_y = mpi_y * el0_y * pow(2, par_ref),
elem_par_z = mpi_z * el0_z * pow(2, par_ref);
mfem::out << "--- Mesh generation: \n";
mfem::out << "Par mesh: "
<< elem_par_x << " x " << elem_par_y << " x " << elem_par_z
<< " (" << elem_par_x*elem_par_y*elem_par_z << " elements)\n"
<< "Elem / task: "
<< el0_x * pow(2, par_ref) << " x "
<< el0_y * pow(2, par_ref) << " x "
<< el0_z * pow(2, par_ref)
<< " (" << el0_x*pow(2, 3*par_ref)*el0_y*el0_z << " elements)\n"
<< "MPI blocks: " << mpi_x << " x " << mpi_y << " x " << mpi_z
<< " (" << mpi_x * mpi_y * mpi_z << " mpi tasks)\n" << "-\n"
<< "Serial mesh: "
<< mpi_x*el0_x << " x " << mpi_y*el0_y << " x " << mpi_z*el0_z
<< " (" << mpi_x*el0_x*mpi_y*el0_y*mpi_z*el0_z << " elements)\n"
<< "Elem / task: "
<< el0_x << " x " << el0_y << " x " << el0_z << std::endl
<< "Par refine: " << par_ref << std::endl;
mfem::out << "--- \n";
}
Mesh mesh;
int nxyz[3];
if (dim == 2)
{
mesh = Mesh::MakeCartesian2D(mpi_x * el0_x,
mpi_y * el0_y, Element::QUADRILATERAL, true);
nxyz[0] = mpi_x; nxyz[1] = mpi_y;
}
else
{
mesh = Mesh::MakeCartesian3D(mpi_x * el0_x,
mpi_y * el0_y,
mpi_z * el0_z, Element::HEXAHEDRON, true);
nxyz[0] = mpi_x; nxyz[1] = mpi_y; nxyz[2] = mpi_z;
}
const int NE = mesh.GetNE();
partitioning.SetSize(NE);
std::unique_ptr<int[]> p_raw(mesh.CartesianPartitioning(nxyz));
std::copy(p_raw.get(), p_raw.get() + NE, partitioning.GetData());
return mesh;
}
bool Mesh::Conforming() const
{
if (NURBSext)

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