Compare commits

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Author SHA1 Message Date
Will Pazner cd1485a62f Add some comments 2022-02-02 16:52:25 -08:00
Will Pazner 0ba282bc62 Do BCs on device with device-aware MPI 2022-02-02 16:05:45 -08:00
camierjs 855f53f83b gitignore update 2022-01-26 10:38:09 -08:00
camierjs aee6993f12 Merge master in bps 2022-01-22 08:11:24 -08:00
camierjs 93acff80ff MPI consol reporter fix & setup params 2022-01-22 08:10:58 -08:00
Tzanio Kolev bba2c08025 Merge pull request #2740 from mfem/vsx
vsx128 GNU fix [vsx]
2022-01-20 08:08:21 -08:00
Tzanio Kolev b23a3921bf Merge pull request #2743 from mfem/shadow-examples-dev
Fixing shadow variables in examples [shadow-examples-dev]
2022-01-19 09:56:40 -08:00
Will Pazner e4bcd7c58c Merge pull request #2746 from mfem/shadow-tests-dev
Fixing shadow variables in unit tests [shadow-tests-dev]
2022-01-18 15:08:30 -08:00
Veselin Dobrev 30a3c76325 Merge pull request #2771 from mfem/stopwatch-fix-comment
Fix erroneous comment in StopWatch
2022-01-18 12:12:35 -08:00
Stowell, Mark L 99e1a076ba Switching to ostream named os 2022-01-18 11:15:11 -08:00
Will Pazner 1ae61b0ada Merge remote-tracking branch 'origin/master' into shadow-tests-dev 2022-01-18 10:29:05 -08:00
Tzanio Kolev f0398ff391 Merge pull request #2732 from mfem/shadow-tmop-dev
Fixing shadowed variables in tmop files [shadow-tmop-dev]
2022-01-18 10:26:08 -08:00
Tzanio Kolev df1deca20e Merge pull request #2736 from mfem/shadow-gen-dev
Fixing shadow variables in general classes [shadow-gen-dev]
2022-01-17 17:53:37 -08:00
Tzanio Kolev d1b79a7fc3 Merge pull request #2744 from mfem/shadow-miniapps-dev
Fixing shadow variables in miniapps [shadow-miniapps-dev]
2022-01-17 17:53:00 -08:00
Tzanio Kolev 426a77be6c Merge pull request #2754 from mfem/shifted-bug-fix
Shifted bug fix
2022-01-17 17:52:17 -08:00
Will Pazner 20dced51fd Fix erroneous comment in StopWatch 2022-01-14 17:59:13 -08:00
Vladimir Z Tomov 00c4f59c76 Minor. 2022-01-13 18:47:38 -08:00
Ketan Mittal 5a6e0dad2e minor 2022-01-11 15:56:56 -08:00
Ketan Mittal 774794595b move temp_elvect->elvect outside the loop 2022-01-11 13:56:42 -08:00
camierjs cfa82dccc0 In device.?pp, use device_id for shadowed variable and switch out to os 2022-01-11 11:09:12 -08:00
camierjs 30803b8f00 Rename Memory<T>::New input arguments 2022-01-11 11:05:13 -08:00
Nabil Atallah 92112fccaa changed '=' sign to '+=' in line 644 otherwise at every integration point the values get overwritten 2022-01-05 16:24:51 -08:00
Nabil Atallah 70bd112ea4 added the sbm_aux.hpp file to the CMakeLists.txt and also added it to line 56 since the object files depend on it 2022-01-05 13:59:31 -08:00
Nabil Atallah 6ba7e82f91 Merge branch 'master' of https://github.com/mfem/mfem
Fixed a bug in the sbm_solver.cpp file of the shifted miniapp.
2022-01-05 13:38:44 -08:00
Nabil Atallah ba83609892 reset the temp_elvect vector to zero at the beginning of the loop over each integration point in sbm_solver.cpp belonging to the shifted miniapp, also fixed a typo in the comments related to the sign of the SBM penalty term 2022-01-05 11:28:49 -08:00
Stowell, Mark L 74fc2de695 Adjusting names in function declarations 2022-01-04 17:34:47 -08:00
camierjs 13567886cd Params & remove inner_cg 2021-12-30 17:23:47 -08:00
Stowell, Mark L df6e73654a Fixing shadow variables in autodiff miniapps 2021-12-30 11:33:21 -08:00
Stowell, Mark L a07fc07206 Changes suggested by @camierjs 2021-12-30 11:04:44 -08:00
camierjs 9b164c8122 Device run fix & params tuning 2021-12-29 17:21:55 -08:00
camierjs 344575476a LOR assembly parallel columns elimination fix & NodalInterpolation vector un-static 2021-12-29 15:11:11 -08:00
camierjs 17d11ffde8 AppVeyor constant evaluation expression 2021-12-29 13:50:26 -08:00
camierjs 4a0a785a22 Remove restricts for AppVeyor 2021-12-29 13:23:55 -08:00
camierjs 0d22cbe482 AppVeyor fix 2021-12-29 12:54:49 -08:00
camierjs f922849049 Remove MFEM_UNROLL to avoid optimizer message it was unable to perform the requested transformation 2021-12-29 12:37:41 -08:00
camierjs 0705abaa17 Remove CuSparse init hidden in Dof_TrueDof_Matrix 2021-12-29 12:04:59 -08:00
Stowell, Mark L 5e672f26bc Removing unneeded function after consulting @camierjs 2021-12-29 10:24:18 -08:00
Vladimir Z Tomov f3f37e8e5a Minor. 2021-12-28 15:19:24 -08:00
camierjs be6f6823a0 nxyz partitioning & GLVis output 2021-12-28 12:01:34 -08:00
Stowell, Mark L 475d3d8102 Fixing shadow variables in unit tests 2021-12-28 11:42:51 -08:00
Veselin Dobrev 0f239c22e0 Merge pull request #2730 from mfem/ScaledOperatorFix
Fix size of ScaledOperator and add MultTranspose
2021-12-28 10:28:17 -08:00
Tzanio Kolev 783f0e0304 Merge pull request #2709 from mfem/new-compilers-warnings-fix
Fix some compiler warnings from new clang and gcc versions
2021-12-28 09:58:40 -08:00
Stowell, Mark L dd03eb6d79 Adding missing shadow vdofs 2021-12-27 14:38:20 -08:00
Stowell, Mark L 0f4bd5925a Fixing shadow variables in miniapps 2021-12-27 12:46:22 -08:00
Stowell, Mark L ca3e2b3098 make style 2021-12-27 10:42:01 -08:00
Stowell, Mark L b14bd1f237 Fixing shadow variables in examples 2021-12-27 10:41:09 -08:00
camierjs 1bb502acb5 Fix partitioning & tune parameters 2021-12-24 13:45:03 -08:00
camierjs 3cd073df96 cmake files fix 2021-12-23 16:49:02 -08:00
camierjs 6032edcb0f Warnings being treated as errors 2021-12-23 16:23:16 -08:00
Stowell, Mark L fa25a70da6 Fixing shadow variables in general classes 2021-12-23 16:21:31 -08:00
camierjs e9b9152f59 vsx128 fix 2021-12-23 16:20:05 -08:00
camierjs d538a0e936 LOR warnings 2021-12-23 16:14:19 -08:00
camierjs 189e4f2bd1 Warnings & documentation 2021-12-23 16:08:10 -08:00
camierjs 123cfee0d0 Add <limits.h> 2021-12-23 14:16:40 -08:00
camierjs 52328a7051 Cleanup, Sync & serial support 2021-12-23 14:06:48 -08:00
camierjs 9584b34d74 Add missing cstring header 2021-12-23 10:10:47 -08:00
Stowell, Mark L bd7527e922 Swapping leading underscores for trailing 2021-12-23 09:49:01 -08:00
Stowell, Mark L 60a1d3d1d4 Fixing shadowed variables in tmop files 2021-12-22 15:46:33 -08:00
camierjs e68b5a8200 Add fem/lor_assembly_ni3.cpp and use GPU kernels for BC elimination 2021-12-22 15:17:39 -08:00
Syun'ichi Shiraiwa 07ba5bd336 make style 2021-12-21 21:55:09 -05:00
Syun'ichi Shiraiwa 4027c86797 fix size of ScaledOperator and add MultTranspose 2021-12-21 21:52:54 -05:00
Tzanio Kolev 8300a563ae Merge pull request #2722 from mfem/pncmesh-getessvdof-fix
Fix `ParFiniteElementSpace::GetEssentialVDofs()` for non-conforming meshes
2021-12-21 08:36:14 -08:00
Tzanio Kolev 753f351934 Merge pull request #2519 from mfem/bicgstab-print-lvl-fix
Modernize print level semantics
2021-12-21 07:47:49 -08:00
Veselin Dobrev 9310e05a15 Override appropriately the SetPrintLevel methods in class KINSolver 2021-12-20 16:20:27 -08:00
termi-official 985fff881c Treat 'no convergence' as a warning. 2021-12-20 21:33:54 +01:00
termi-official 5b841fb239 Remove deprecation attribute from IterativeSolver::print_level together with all of its support code. 2021-12-20 20:53:59 +01:00
camierjs 1203651bfb Add MFEM_UNROLL foldback 2021-12-19 18:23:20 -08:00
Tzanio Kolev 6f7b29ac14 Merge branch 'master' into bicgstab-print-lvl-fix 2021-12-19 17:58:19 -08:00
Tzanio Kolev 589d2775cb Merge pull request #2629 from mfem/simd-unary-plus
Add unary + to AutoSIMD
2021-12-19 12:14:36 -08:00
camierjs b7835fa392 Merge master in bps 2021-12-19 09:20:25 -08:00
camierjs ac2e4838d1 Add fine BoomerAMG 2021-12-17 09:24:18 -08:00
Tzanio Kolev 8a565cad67 Merge pull request #2677 from mfem/jacobi-abs-diag
Positive diagonal in Jacobi smoothers
2021-12-16 17:58:31 -08:00
Tzanio Kolev 5f9ee51d40 Merge pull request #2684 from mfem/tmop-renameandrefactor
TMOP clean up
2021-12-16 17:57:45 -08:00
Tzanio Kolev acb85daaff Merge pull request #2656 from mfem/lor-gridfunction-coeff
GridFunction coefficients that work with LOR preconditioning
2021-12-16 17:57:04 -08:00
Tzanio Kolev 36ec075849 Merge pull request #2702 from mfem/add-code-of-conduct
MFEM Code of Conduct
2021-12-16 14:12:31 -08:00
camierjs 5c5c8aa645 Switched to sides 2021-12-16 12:31:35 -08:00
Veselin Dobrev 8b0262bd29 Fix an issue where some boundary dofs are not properly marked
as essential in ParFiniteElementSpace::GetEssentialVDofs() when
using a parallel non-conforming mesh.

This should address GitHub issue #2559.
2021-12-16 02:53:09 -08:00
Tzanio d9a18088a2 Updated to Contributor Covenant Code 2.1 2021-12-15 08:02:04 -08:00
Tzanio KolevandVeselin Dobrev 830ea90cf8 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:56 -08:00
Tzanio KolevandVeselin Dobrev 9377a43d28 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:51 -08:00
Tzanio KolevandVeselin Dobrev 87cd94a1fe Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:44 -08:00
Tzanio KolevandVeselin Dobrev 1aa1e0633b Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:36 -08:00
Tzanio KolevandVeselin Dobrev 57f3462a00 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:31 -08:00
Tzanio KolevandVeselin Dobrev 186f65ccc1 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:23 -08:00
Tzanio KolevandVeselin Dobrev 8e11743052 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:16 -08:00
Tzanio KolevandVeselin Dobrev 649163a36f Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:09 -08:00
Veselin Dobrev a58567695e Fix an error when building with HIP which may also be causing
problems with CUDA.

In OperatorJacobiSmoother, use absolute value of diagonal, if
requested, during setup instead of during action.

A few tweaks in SparseMatrix::Jacobi and SparseMatrix::DiagScale.

For the GitLab CI on Lassen, disable ATS.
2021-12-14 22:37:53 -08:00
Tzanio Kolev 53c04ef171 Update CONTRIBUTING.md 2021-12-14 21:52:00 -08:00
Veselin Dobrev 2c09747196 Fix some compiler warnings from new clang and gcc versions 2021-12-14 21:49:31 -08:00
Tzanio e9feadbbfc Small updates 2021-12-14 08:27:27 -08:00
Tzanio 81dceb94b6 Adressing comments 2021-12-13 13:21:20 -08:00
Tzanio Kolev 39022bce0f Merge pull request #2698 from mfem/nvwarnings
Remove nvcc warnings about partially overridden virtual functions [nvwarnings]
2021-12-13 13:13:38 -08:00
Tzanio 15242ffcf6 Editorial adjustments in CHANGELOG. 2021-12-13 13:08:53 -08:00
Will Pazner 9a5cafafc6 Merge remote-tracking branch 'origin/master' into simd-unary-plus 2021-12-13 11:37:29 -08:00
Will Pazner 11275857a3 Update CHANGELOG 2021-12-13 11:37:18 -08:00
Will Pazner d06a528958 Merge remote-tracking branch 'origin/master' into lor-gridfunction-coeff 2021-12-13 10:49:50 -08:00
Will Pazner f54b8bd6d8 Update CHANGELOG to mention LOR GridFunction coefficient support 2021-12-13 10:49:39 -08:00
Will Pazner 239c672988 Merge pull request #2655 from mfem/pmesh-mem-leak-fix
Fix Memory leaks in PMesh
2021-12-13 10:40:51 -08:00
camierjs 3bf4235280 Faster transfers 2021-12-12 17:23:55 -08:00
Vladimir Z Tomov aabf4ce84d Fixed a wrong coefficient in the adaptive limiting. 2021-12-12 16:27:40 -08:00
camierjs f31abd53c4 Diffusion fix, hyper-parameters tuning 2021-12-10 17:48:05 -08:00
camierjs 40e80d6861 Fast transfers and diffusion kernels 2021-12-10 13:51:23 -08:00
Tzanio Kolev f95c2e156b Create CODE_OF_CONDUCT.md 2021-12-10 12:11:10 -08:00
camierjs e4de905322 Merge branch 'amd' into bps 2021-12-09 11:08:20 -08:00
camierjs 8cf20ff650 nvtx cleanup 2021-12-09 10:10:42 -08:00
camierjs 51e634777d Benchmark context factorize and setup time fix 2021-12-09 09:19:12 -08:00
camierjs faf9821920 All tests: LOR, GPU, MPI & Wavelets 2021-12-08 18:42:01 -08:00
camierjs 82c1fe1f5a Fix one coeff 2021-12-08 14:09:48 -08:00
camierjs 4f97798591 Add fine LOR batch GPU 2021-12-08 13:16:07 -08:00
camierjs f264e3ff29 Add LOR batched GPU 2021-12-08 12:00:03 -08:00
camierjs 7e283840dc Merge branch 'lor-batched-gpu' into bps 2021-12-08 11:17:48 -08:00
camierjs 3a82eaf76f Bring linext and switch b to use FULL LinearAssemblyLevel 2021-12-08 11:13:28 -08:00
camierjs 8e03705911 Merge branch 'linext' into bps 2021-12-08 11:03:29 -08:00
camierjs 99e39c03c3 nvtx setup 2021-12-08 11:00:58 -08:00
camierjs 80fa63cb64 Remove nvcc warnings about partially overridden virtual functions 2021-12-08 10:46:29 -08:00
camierjs 4b5f578a99 Merge master in lor-batched-gpu 2021-12-08 09:47:51 -08:00
camierjs 8dbe09906b Switch to nvtx header 2021-12-08 09:47:25 -08:00
camierjs c9935c4c98 Merge master in amd 2021-12-08 08:12:40 -08:00
camierjs 1e39adaf0d Merge master in bps 2021-12-08 08:12:22 -08:00
camierjs e70ccc2d1e Merge master in linext 2021-12-08 08:06:09 -08:00
Veselin Dobrev 97796f0beb Merge branch 'master' into bicgstab-print-lvl-fix
Resolved conflict:
   CHANGELOG
2021-12-07 12:44:31 -08:00
Will Pazner c1562552f1 Make performance ex1 and ex1p templated on dimension 2021-12-02 10:17:06 -08:00
termi-official a44a8640d1 Change output behavior of warnings to mfem::out for consistency and update PrintLevel docs with the associated stream. 2021-12-01 17:24:26 +01:00
camierjs 6caccacbec BC outside the kernel for parallel/sequential 2021-11-30 18:09:07 -08:00
camierjs b64d57c06e Parallel cuda through RAP 2021-11-30 17:22:22 -08:00
camierjs 67347ebade Merge master in lor-batched-gpu 2021-11-30 15:53:42 -08:00
camierjs fdb5d7d627 Parallel debug device 2021-11-30 15:53:26 -08:00
Ketan Mittal 001f1a8b79 add missing PC 3D metrics 2021-11-30 13:59:26 -08:00
Ketan Mittal 92e42d4332 fix spacing etc 2021-11-30 12:45:19 -08:00
Ketan Mittal 9c7150c93e Merge branch 'master' of https://github.com/mfem/mfem into tmop-renameandrefactor 2021-11-30 10:24:14 -08:00
Ketan Mittal 19a2ad26e1 minor 2021-11-30 10:24:12 -08:00
camierjs 84c6ffc623 Back to Legacy/Full/Deviced & lor_solvers w/ precond 2021-11-29 19:05:05 -08:00
camierjs d1068e08df Merge master in lor-batched-gpu 2021-11-29 11:45:05 -08:00
camierjs d2ae9d12c2 bench ess dofs fix 2021-11-29 11:44:47 -08:00
Veselin Dobrev 568562a7d5 Restore a comment that was deleted unintentionallly. 2021-11-26 22:14:42 -08:00
Veselin Dobrev aa8be1b59c In class IterativeSolver, silence the depracation warnings for
`print_level` in a way that works for both Clang and GCC.
2021-11-26 21:34:33 -08:00
Veselin Dobrev 85a79cbea5 Try to suppress deprecation warning with GCC from the
`IterativeSolver` constructors.
2021-11-26 20:17:19 -08:00
Veselin Dobrev 3bf7e07457 Tweak the Doxygen documentation for class IterativeSolver.
Suppress deprecation warnings only when modifying the `print_level`
data member of class `IterativeSolver`.
2021-11-26 20:05:44 -08:00
Vladimir Z Tomov c94cd73dd1 empty line. 2021-11-26 16:02:27 -08:00
Vladimir Z Tomov ff427a04a6 Minor. 2021-11-26 16:01:41 -08:00
Vladimir Z Tomov 2d10dd0abe Options to use abs values of the diagonal in OperatorJacobi, DSmoother. 2021-11-26 15:49:40 -08:00
termi-official a53353776d Update convergence criterion docs. 2021-11-26 17:08:39 +01:00
termi-official 2f1c03796a Adapt tmop print policy. 2021-11-26 16:39:06 +01:00
termi-official 199d19c195 Add documentation about warning suppression in solver. 2021-11-26 16:28:32 +01:00
Will Pazner eb6ef4a537 Minor 2021-11-24 17:47:27 -08:00
Will Pazner af7c58aa0e Minor solver output consistency fixes 2021-11-24 17:20:31 -08:00
Will Pazner d4f404cf74 Don't repeat last iteration in GMRES output 2021-11-24 10:53:53 -08:00
Will Pazner 2080fde2a1 Small changes to reduce diffs with old solver output 2021-11-24 10:44:38 -08:00
Will Pazner 4d4a04b222 Parallel LOR assembly using RAP 2021-11-24 09:55:35 -08:00
Will Pazner c80a15e209 Clean LORBase::AssembleSystem_ 2021-11-24 09:49:55 -08:00
Will Pazner 4682e5f724 Remove legacy batched LOR 2021-11-24 09:48:58 -08:00
camierjs cc0668cf81 Add support for linear form extension Update and use full assembly in example 6 and 6p. 2021-11-22 10:52:57 -08:00
Will Pazner 7ff5874904 Typo 2021-11-21 13:30:50 -08:00
Will Pazner 757ee1a24a Merge remote-tracking branch 'origin/master' into lor-gridfunction-coeff 2021-11-20 13:13:17 -08:00
Will Pazner 861c7c4a04 Add unit tests for GridFunction coefficients on refined meshes 2021-11-20 13:13:16 -08:00
camierjs 0d968ca140 Initial import 2021-11-19 15:01:14 -08:00
camierjs 48b8dab175 VectorDomainLFGradIntegrator spatial terms documentation 2021-11-17 16:17:23 -08:00
camierjs 388d585c91 Typo 2021-11-17 14:37:42 -08:00
camierjs ea37459526 Use Device::IsEnabled() to enable LinearAssemblyLevel::FULL 2021-11-17 14:31:06 -08:00
camierjs 38ae653116 Use GeometricFactors::DETERMINANTS instead of recomputing 2021-11-17 14:22:51 -08:00
camierjs 806ebf7713 Back to vdim fix 2021-11-17 13:18:10 -08:00
camierjs eed250bfee Add markers to the tests 2021-11-17 11:46:16 -08:00
camierjs 652243cfbc VectorDomainLFGradIntegrator SpaceDimension fix & documentation 2021-11-17 08:20:54 -08:00
camierjs 99a9c54077 CHANGELOG & CONTRIBUTING.md 2021-11-16 18:26:48 -08:00
camierjs ea4b7c7113 AppVeyor changes 2021-11-16 17:56:13 -08:00
camierjs ad70f83558 Simplify and use scratch mem for all kernels 2021-11-16 17:42:21 -08:00
camierjs 26971f1177 Starting to use device scratch memory 2021-11-16 13:11:28 -08:00
camierjs e3967b64ae VectorDomainLFIntegratorAssemble2D with global mem fallback 2021-11-16 11:28:41 -08:00
camierjs d1a39e13de Update with latest LinearFormExtTest API 2021-11-16 10:17:52 -08:00
camierjs 74eb448ed5 Remove extra ‘;’ 2021-11-16 10:13:14 -08:00
camierjs 9ea6772507 Simplify 2021-11-16 10:10:05 -08:00
camierjs 26e9b3282a Factorize into header files 2021-11-16 08:42:22 -08:00
camierjs 0d87cf1cfe Ordering tests 2021-11-15 18:27:10 -08:00
camierjs 0de1b5a0c5 Simplify fem/lininteg_vector_domain_grad 2021-11-15 15:06:05 -08:00
camierjs e2db1ac180 Simplify fem/lininteg_domain_grad 2021-11-15 14:08:16 -08:00
camierjs d4d8beb7fb Simplify fem/lininteg_domain 2021-11-15 13:10:03 -08:00
camierjs a3685c0b20 Include tests revert 2021-11-15 11:34:34 -08:00
camierjs bbd190bd10 Include fix 2021-11-15 11:22:14 -08:00
camierjs 1d88c9365f Factorize LinearFormExtTest between tests unit and benchmarks 2021-11-15 11:10:23 -08:00
camierjs 2fe125163e Remove benchmarks from tests 2021-11-14 17:39:50 -08:00
camierjs dc213a84fc Add tests/unit/fem/test_linearform_ext 2021-11-14 09:32:32 -08:00
camierjs 75d7c7056d Merge master in linext 2021-11-13 12:35:38 -08:00
camierjs 647b400508 Revert change line in fem/lininteg.cpp 2021-11-13 12:35:17 -08:00
camierjs c69858abde Revert xbench and fix tests benchmarks 2021-11-13 12:27:30 -08:00
camierjs 6423829b59 Benchmarks mockup 2021-11-09 18:43:33 -08:00
Will Pazner 60b5110031 Allow the same GridFunctionCoefficient (and related classes) to work on both coarse and refined meshes
Useful for LOR preconditioning with GridFunction coefficients. The same
Coefficient can be used on both the coarse and refined mesh.
2021-11-09 16:53:31 -08:00
camierjs b9a2344979 Turn mfes into FiniteElementSpace 2021-11-09 16:34:16 -08:00
camierjs c037eab442 tests/benchmarks/makefile fix 2021-11-09 16:24:31 -08:00
Will Pazner fe08c6bd36 Add mesh data member to ElementTransformation 2021-11-09 15:55:36 -08:00
Tom Stitt 977e978ad7 fix one more leak 2021-11-09 15:50:22 -08:00
camierjs 5e093c603b Rename to FullLinearFormExtension 2021-11-09 15:49:31 -08:00
camierjs 4721fa8494 Add tests/benchmarks as tests subdir 2021-11-09 15:38:05 -08:00
camierjs aa517bd1d9 Merge master in linext 2021-11-09 15:27:26 -08:00
camierjs ded6e7db3d Cleanup 2021-11-09 15:27:18 -08:00
camierjs 5c2d4b72e2 Forwarding changes for vdim layout 2021-11-09 14:37:29 -08:00
Tom Stitt db43873b7d delete face_nbr_el_to_face in ParMesh::Destroy 2021-11-09 13:43:48 -08:00
camierjs 541bfa5ddd Merge master in lor-batched-gpu 2021-11-09 11:24:12 -08:00
camierjs eab1c751f1 Cleanup and add back orders up to 16 2021-11-09 11:00:06 -08:00
camierjs 1a09a674bc Remove intermediate Q vector 2021-11-09 09:59:58 -08:00
camierjs f3661ed318 Add LORRestriction & Cleanup 2021-11-09 09:34:39 -08:00
camierjs 8c44327155 Update with 'All' tests 2021-11-08 17:37:52 -08:00
camierjs c21bf4ae13 Cleanup 2021-11-07 10:11:38 -08:00
camierjs 9c8a6b6029 Merge master in lor-batched-gpu 2021-11-07 08:24:18 -08:00
camierjs 404d7bda1e Merge master in amd 2021-11-07 07:58:03 -08:00
camierjs 32a6d747d0 Add sweeping CEED benchmarks and tex file 2021-11-06 15:11:36 -07:00
camierjs 9f0c12aa3b Style 2021-11-06 10:05:54 -07:00
camierjs 695997c8f8 Merge master in amd 2021-11-06 10:03:16 -07:00
camierjs 67af62e17b Propagate VectorDomainLFGradIntegrator to device kernels 2021-11-05 18:27:48 -07:00
Will Pazner 6eb59dc335 Batched LOR: read vertices directly from nodes 2021-11-05 16:50:05 -07:00
camierjs f5b801ba4c Merge master in linext 2021-11-05 15:00:56 -07:00
camierjs d1b94414ef Update 2021-11-05 14:47:33 -07:00
camierjs ca5773a744 Fix static Array error 2021-11-04 18:05:09 -07:00
Will Pazner 15ebd111ee Add FA comparison. Rename Standard to Legacy 2021-11-04 17:25:51 -07:00
camierjs f9b27068c5 Cleanup 2021-11-03 16:59:58 -07:00
camierjs d12aefb41b Fused geometric factors 2021-11-03 16:10:37 -07:00
camierjs 471aeab0b7 With inner back 2021-11-03 11:56:08 -07:00
camierjs 55ab354c22 With local Jacobians 2021-11-03 11:43:53 -07:00
camierjs 7dbbd99737 Local col_ptr 2021-11-03 10:11:10 -07:00
camierjs 5a18e9be86 Before removing col_ptr 2021-11-03 09:40:58 -07:00
camierjs b0c478f722 Inner threads for Vji 2021-11-03 09:30:48 -07:00
camierjs b1bc6e99a9 Update 2021-11-03 08:52:51 -07:00
camierjs 1129a22d66 Outer loop on GPU 2021-11-02 18:45:21 -07:00
camierjs f262bfe6dc Sync 2021-11-02 15:58:31 -07:00
camierjs f45f7348f0 Jacobians and local arrays 2021-11-02 14:30:38 -07:00
camierjs 87a2158bf2 Cleanup 2021-11-02 14:12:44 -07:00
Will Pazner 40f672c230 Add unary + SIMD specializations 2021-11-02 13:33:38 -07:00
termi-official e49a744288 Apply style... 2021-11-02 18:50:49 +01:00
termi-official 388350029b Propagate first_and_last option into nonlinear iterative solvers. 2021-11-02 18:48:43 +01:00
camierjs 08d5d8ef80 Add tests/benchmarks bench_lor_assembly 2021-11-02 10:47:53 -07:00
termi-official 3c3d220460 Last MINRES iteration was sometimes missing. 2021-11-02 18:37:22 +01:00
termi-official 0279dd9787 Fix FGMRES one-by-off. 2021-11-02 18:34:29 +01:00
termi-official 46d800d05e Report correct norm in BiCGStab. 2021-11-02 18:29:20 +01:00
termi-official 4e1420f1e2 Fix GMRES final iteration report. 2021-11-02 18:29:02 +01:00
termi-official a9e93adb3f Deduplicate MINRES output. 2021-11-02 17:48:18 +01:00
termi-official 3bd47c26fd Make FGMRES output more consistent. 2021-11-02 17:21:01 +01:00
termi-official 3348ba2dbd Make BiCGStab output more consistent. 2021-11-02 17:07:46 +01:00
camierjs cef5c6a795 Merge remote-tracking branch 'origin/lor-batched-pa' into lor-batched-gpu 2021-11-02 07:58:06 -07:00
Will Pazner c5a868208f Add MFEM_UNROLL definition for clang and gcc 2021-11-01 17:50:32 -07:00
Will Pazner 31e1efb076 Unroll loops with pragma
Big speedup, but can we do this in a portable way?
2021-11-01 17:32:50 -07:00
Will Pazner 3a1f878bc6 Store Q-data for stride-1 access 2021-11-01 17:32:27 -07:00
Will Pazner b6d314b6ba Minor optim 2021-11-01 17:17:53 -07:00
Will Pazner dfa1ee3711 Use precomputed sparsity 2021-11-01 17:06:50 -07:00
Will Pazner e47a3ccf77 Alg 4: sum factorization 2021-11-01 16:40:58 -07:00
Ketan Mittal d8df06ab70 minor - put back accidentally removed lines 2021-11-01 10:33:07 -07:00
Ketan Mittal 5dcd85c7c7 make style 2021-11-01 09:18:20 -07:00
Ketan Mittal 047ca50acb Merge branch 'master' of https://github.com/mfem/mfem into tmop-renameandrefactor 2021-11-01 09:17:34 -07:00
Tzanio Kolev 4d1a0ac51d Update CHANGELOG 2021-10-31 14:59:55 -07:00
Tzanio c887336fa4 Updated CHANGELOG 2021-10-31 14:59:06 -07:00
Tzanio Kolev cde981b141 Merge branch 'master' into bicgstab-print-lvl-fix 2021-10-31 14:50:34 -07:00
Will Pazner 02828bbbff Compute geometric factors manually 2021-10-31 12:10:09 -07:00
Will Pazner 8732562d82 Alg 3 2021-10-31 10:07:26 -07:00
Will Pazner 7015973756 Alg 2 in 3D 2021-10-31 08:28:49 -07:00
camierjs d4440f8abe Merge master in linext 2021-10-30 10:48:46 -07:00
camierjs 35ebe4270b Merge master in amd 2021-10-30 10:41:04 -07:00
Will Pazner cd107e9c55 Minor 2021-10-29 19:16:22 -07:00
Will Pazner 8d1780147d Add 2D compile-time option to performance/ex1[p]
Adds sample runs testing the 2D templated code to avoid regressions
2021-10-29 17:40:27 -07:00
Will Pazner ea576f49df Prototype of batched LOR assembly
Diffusion kernel in 2D and 3D
2021-10-29 17:29:21 -07:00
Will Pazner d36baa4dbb [don't merge] Changes to templated code
Got rid of unary + in 2D kernel, changed to Gauss-Lobatto integration rule
2021-10-29 17:29:21 -07:00
Will Pazner cebde80304 First pass at batched LOR assembly (1D only) 2021-10-29 17:29:21 -07:00
Will Pazner ef02be8c82 Format Doxygen comment 2021-10-29 17:29:21 -07:00
Will Pazner f54136e6ea Use nullptr instead of NULL in LOR classes 2021-10-29 17:29:21 -07:00
Will Pazner 259c8b510d Clarify DOF and TDOF permutations for LOR 2021-10-29 17:29:21 -07:00
Will Pazner f452882d29 Add unary + operator to AutoSIMD 2021-10-29 16:22:13 -07:00
Ketan Mittal 0d45eab46d initial commit with some refactoring and renaming 2021-10-20 10:38:36 -07:00
camierjs 67648edbd3 Merge master in linext 2021-10-17 09:28:08 -07:00
camierjs 48033a6248 Test size 2021-10-17 09:27:56 -07:00
camierjs 6cfda5768d Merge master in linext 2021-10-15 14:03:44 -07:00
camierjs 3195f8cb1a Almost equal, Grad D1D fix 2021-10-15 14:02:57 -07:00
camierjs a6d8b0dd3f Fix AppVeyor restrict errors - bis 2021-10-13 10:55:26 -07:00
Will Pazner 15fbf80e57 Remove unneeded comment 2021-10-12 21:27:21 -07:00
Will Pazner e3450da53e Minor changes to MINRESSolver print level 2021-10-12 20:49:35 -07:00
Will Pazner 1c4b657f63 Minor changes to SLISolver printing 2021-10-12 20:37:12 -07:00
Will Pazner a19e625fc9 Delete empty comments 2021-10-12 18:10:40 -07:00
Will Pazner 37bd0ec75d Edits to IterativeSolver Doxygen comments 2021-10-12 18:03:59 -07:00
Will Pazner 020d2173c3 Minor changes to "FirstAndLast" print options 2021-10-12 11:39:54 -07:00
camierjs f134a17870 Fix AppVeyor restrict errors 2021-10-11 10:23:27 -07:00
camierjs 442e172793 Add fem/bilininteg_mass_pa_fast_hip.cpp kernels 2021-10-11 09:57:33 -07:00
camierjs b5598d192f Merge master in amd 2021-10-11 08:39:32 -07:00
camierjs 64d4e31db1 Test & pass vector domain grad 2021-10-08 11:45:57 -07:00
camierjs 3c01497e5f Vdim fix for VectorDomainLF 2021-10-08 09:13:33 -07:00
camierjs 36b9398432 Fix unused variable 2021-10-06 16:37:57 -07:00
camierjs e282332ec2 DomainLF, VectorDomainLF, DomainLFGrad & VectorDomainLFGrad, 2D & 3D testbench 2021-10-06 16:31:54 -07:00
camierjs 4ecac81e45 First pass, but vdim VectorDomainLFGradIntegrator 2021-10-05 11:32:04 -07:00
camierjs 76f93e21f5 Update 2021-10-05 10:42:01 -07:00
camierjs eab24f0842 2D/3D domain & vector domain 2021-10-04 15:06:27 -07:00
camierjs 8986e54f20 vector domain 2021-10-04 12:34:08 -07:00
camierjs c80a5e681b Add scalar test with constant coeff 2021-10-04 09:38:31 -07:00
camierjs 04ab9f4699 Merge master in linext 2021-10-01 08:03:49 -07:00
termi-official b889952837 Fix new macros in MSVC. 2021-09-29 16:54:26 +02:00
termi-official 8d96e40489 Make style... 2021-09-29 01:40:03 +02:00
termi-official d493efa295 Tweak docs. 2021-09-29 01:32:34 +02:00
termi-official a43de945bd Forgot a file. 2021-09-29 01:16:36 +02:00
termi-official 32a7939e4e Incorporate Will's changes. 2021-09-29 01:15:02 +02:00
termi-official 1f17768e33 Print warnings to mfem::err 2021-09-29 00:44:45 +02:00
termi-official 91f59a269c Revamp 'first and last' print option from legacy print level 3. 2021-09-29 00:41:59 +02:00
termi-official f8d501562f Exchange PrintLevel enum with struct+builder pattern. 2021-09-29 00:16:25 +02:00
termi-official b6530be3f9 Make style... 2021-09-28 21:45:51 +02:00
termi-official 3cbfee625a Add portable way to skip warnings generated by internal usage of deprecated variables. 2021-09-28 21:42:18 +02:00
Dennis Ogiermann 0ec9789849 Merge pull request #2572 from mfem/deprecate-print-level
Fix deprecation warnings for IterativeSolver::print_level
2021-09-28 18:25:50 +02:00
camierjs 50332ea9cc Merge master in amd 2021-09-28 07:33:25 -07:00
camierjs 9ba51c724f Merge master in linext 2021-09-28 07:32:48 -07:00
Will Pazner 7a20d17f90 Add pragma to ignore deprecated warnings in IterativeSolver::IterativeSolver 2021-09-27 15:47:04 -07:00
Will Pazner 317032fdbd Add bitwise or overload for PrintLevel 2021-09-27 15:34:20 -07:00
Will Pazner d6a0a5a13d Fix deprecation warnings for IterativeSolver::print_level 2021-09-27 15:21:07 -07:00
termi-official c1c39a51b5 Make style... 2021-09-27 23:40:41 +02:00
termi-official c5a7b179d8 Refactor setter/getter logic for print levels. 2021-09-27 23:36:47 +02:00
termi-official e88b99c2e2 Incorporate Will's suggestion: struct PrintOptions -> enum PrintLevel + deprecate old mechanism 2021-09-27 23:24:39 +02:00
Tzanio 793222a7e1 Merge branch 'master' into bicgstab-print-lvl-fix
Conflicts:
	CHANGELOG
2021-09-27 09:13:41 -07:00
termi-official 05bf01378c Add to changelog. 2021-09-27 18:11:53 +02:00
termi-official 71b7497037 Fix math string. 2021-09-27 17:30:49 +02:00
termi-official 5279744c6e Fix out of sync with upstream. 2021-09-27 17:04:05 +02:00
termi-official 19fae213a5 Fix some doxygen issues where no doc has been generated. 2021-09-27 16:53:42 +02:00
termi-official 0768f1940f Specify convergence docs. 2021-09-25 19:32:29 +02:00
termi-official 0c9296ab4b Propagate print_options through all solvers and unify output. 2021-09-25 19:13:40 +02:00
termi-official 7632309ed6 Fix hidden assumption taken when testing (all ranks print out if MPI is not properly initialized). 2021-09-25 17:27:54 +02:00
termi-official 439a3d773c Give recommendation and reasoning for new printing behavior. 2021-09-25 14:38:00 +02:00
termi-official ec2e958e04 Introduce PrintOptions as a new mechanism to set the reporting policy of iterative solvers + some Docs. 2021-09-25 14:28:25 +02:00
camierjs 1ba9cd28bc Initial linear form extension 2021-09-24 11:48:33 -07:00
camierjs 1ded8554ea Merge master in amd 2021-09-15 10:00:30 -07:00
camierjs 8224e0f25d Merge master in amd 2021-09-13 09:11:32 -07:00
termi-official 53eb418526 Merge branch 'master' into bicgstab-print-lvl-fix 2021-09-08 15:10:26 +02:00
termi-official eea189ba98 Change BICGStabSolver print level semantics. 2021-09-08 14:55:03 +02:00
camierjs 3eb542f60c Merge master in amd 2021-09-07 07:55:29 -07:00
camierjs 26eac83243 Merge master in amd 2021-09-02 08:57:05 -07:00
camierjs 4e23f9d936 Merge master in amd 2021-08-25 09:05:42 -07:00
camierjs 2965eda686 Merge master in amd 2021-08-20 14:21:47 -07:00
camierjs 8dc690f8f9 Add Z-batch to fast kernels 2021-08-20 11:55:59 -07:00
camierjs f4355af2fc Revert file fem/bilininteg_mass_pa_diag.cpp 2021-08-20 10:26:00 -07:00
camierjs a11e6a43bc Fix variable rename and extra file 2021-08-20 10:19:14 -07:00
camierjs dacb681df0 Meld toward master 2021-08-20 10:10:46 -07:00
camierjs d61ebf5ff5 Merge master in amd 2021-08-20 08:34:40 -07:00
camierjs bf40b4d55e Remove deprecated calls 2021-08-13 16:14:14 -07:00
camierjs 36fee9505d Fix unused variable 2021-08-13 16:10:33 -07:00
camierjs 3399eab433 Remove include debug header 2021-08-13 15:58:07 -07:00
camierjs 8adfdcd003 Propagate changes 2021-08-13 15:42:26 -07:00
camierjs 491d4427f5 Merge master in amd 2021-08-13 15:31:46 -07:00
camierjs 33aece48c2 Action type for mass kernels 2021-08-13 15:31:27 -07:00
camierjs e421e95c31 Add integrator KernelType logic to handle hybrid E2E (default) and L2L (non-deterministic) kernels 2021-08-12 11:24:17 -07:00
camierjs ca4b4c2e4d Split fem/bilininteg_mass_pa into fem/bilininteg_mass_pa_diag 2021-08-11 10:10:39 -07:00
camierjs d2834d37af Renamea 'ndk' to 'fast' and add AMD specific file with 'fast3' shortcut 2021-08-11 10:02:01 -07:00
camierjs ae9e67e8c2 3 fast kernels 2021-08-10 14:43:33 -07:00
camierjs baff2dc287 Fix variable name 2021-08-05 10:00:27 -07:00
camierjs 958dfc066e Add fast kernel version number 2021-08-05 09:52:11 -07:00
camierjs a9fa288c20 Merge master in amd 2021-08-04 18:35:35 -07:00
camierjs dd70a615e3 Rename to NDK (Non Deterministic Kernels)
Add 'Regs' kernels which use less shared memory
2021-08-04 18:33:56 -07:00
camierjs 4b79037a7d Merge master in amd 2021-07-26 10:41:54 -07:00
camierjs 3572db4761 Rename AMD => NonDeterministicKernels 2021-07-26 10:41:34 -07:00
camierjs 0f0d7eba52 Laghos kernels 2021-07-16 11:10:14 -07:00
camierjs 5ecd76cd26 Laghos addon 2021-07-16 10:44:40 -07:00
camierjs d10e5c5bc8 Merge master in amd 2021-07-15 14:20:47 -07:00
camierjs c2bd05b8f3 Change AMD_PAMassApply forward declaration for AppVeyor 2021-07-14 15:40:54 -07:00
camierjs c00e8a33c7 Remove restrict for AppVeyor 2021-07-14 15:01:51 -07:00
camierjs 9f13c8d574 Update fem/CMakeLists.txt 2021-07-14 14:35:50 -07:00
camierjs 0f8f3d714e Initial ex1/mass setup through AMD environment variable 2021-07-14 14:19:13 -07:00
184 changed files with 13800 additions and 1706 deletions
+16
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@@ -15,6 +15,19 @@
CMakeCache.txt
CMakeFiles/
# NSYS files
*.nsys-rep
# Benchmark files
*.tex
*.org
*.aux
*.log
*.gnuplot
*.table
*.pdf
*.png
# Backup files
*~
@@ -316,6 +329,9 @@ tests/unit/debug_device_tests
# Benchmark binaries
tests/benchmarks/bench_ceed
tests/benchmarks/bench_solvers
tests/benchmarks/bench_linext
tests/benchmarks/bench_lor_assembly
tests/benchmarks/bench_tmop
tests/benchmarks/bench_vector
tests/benchmarks/bench_virtuals
+1 -1
View File
@@ -45,5 +45,5 @@ variables:
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
- lalloc 1 -W 30 -q pdebug tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
- lalloc 1 -W 30 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
needs: [setup]
+21 -5
View File
@@ -10,10 +10,16 @@
Version 4.3.1 (development)
===========================
- Added support for automatic differentiation. Users can select between
native implementation and external library implementation at the
configuration phase. A parallel and two serial examples are implemented
in the autodiff miniapp directory.
- More explicit and consistent formating of the output of iterative solvers
with the new IterativeSolver::PrintLevel options. See linalg/solvers.hpp.
- Added support for automatic differentiation. Users can select between native
implementation and external library implementation during configuration. One
parallel and two serial examples are implemented in the miniapps/autodiff/
directory.
- GridFunctionCoefficient (and the related vector, gradient, divergence, and
curl classes) now work properly with LORDiscretization and LORSolver.
- Added support for mesh preprocessing to resolve fine scale problem data
before simulation. This feature uses adaptive mesh refinement to control the
@@ -71,13 +77,23 @@ Version 4.3.1 (development)
- Added initial TMOP-based capabilities for surface fitting and tangential
relaxation in the mesh-optimizer and pmesh-optimizer miniapps.
- Added ParMesh Adjaceny Set (adjset) creation support to the Conduit Mesh
Blueprint MFEM wrapper functions in ConduitDataCollection.
- Added full assembly / device support for the LinearForm integrators:
* DomainLF: L(v) := (f, v)
* VectorDomainLF: L(v) := ((f1,...,fn), (v1,...,vn))
* DomainLFGrad: L(v) := (f,grad v)
* VectorDomainLFGrad: L(v) := ((f1x,f1y,f1z,...,fnx,fny,fnz),grad(v1,...,vn))
It can be enabled by setting the linear assembly level to
'LinearAssemblyLevel::FULL' with the 'LinearForm::SetAssemblyLevel' method.
- `HypreParVector` and `Vector` now support move semantics, and the copy
constructor for `HypreParVector` now copies the local vector data.
- The HPC versions of ex1 and ex1p (in miniapps/performance) now support
runtime selection of either 2D or 3D meshes.
Version 4.3, released on July 29, 2021
======================================
+133
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@@ -0,0 +1,133 @@
# MFEM Code of Conduct
## Our Pledge
We as members, contributors, and leaders pledge to make participation in our
community a harassment-free experience for everyone, regardless of age, body
size, visible or invisible disability, ethnicity, sex characteristics, gender
identity and expression, level of experience, education, socio-economic status,
nationality, personal appearance, race, caste, color, religion, or sexual
identity and orientation.
We pledge to act and interact in ways that contribute to an open, welcoming,
diverse, inclusive, and healthy community.
## Our Standards
Examples of behavior that contributes to a positive environment for our
community include:
* Demonstrating empathy and kindness toward other people
* Being respectful of differing opinions, viewpoints, and experiences
* Giving and gracefully accepting constructive feedback
* Accepting responsibility and apologizing to those affected by our mistakes,
and learning from the experience
* Focusing on what is best not just for us as individuals, but for the overall
community
Examples of unacceptable behavior include:
* The use of sexualized language or imagery, and sexual attention or advances of
any kind
* Trolling, insulting or derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others' private information, such as a physical or email address,
without their explicit permission
* Other conduct which could reasonably be considered inappropriate in a
professional setting
## Enforcement Responsibilities
Community leaders are responsible for clarifying and enforcing our standards of
acceptable behavior and will take appropriate and fair corrective action in
response to any behavior that they deem inappropriate, threatening, offensive,
or harmful.
Community leaders have the right and responsibility to remove, edit, or reject
comments, commits, code, wiki edits, issues, and other contributions that are
not aligned to this Code of Conduct, and will communicate reasons for moderation
decisions when appropriate.
## Scope
This Code of Conduct applies within all community spaces, and also applies when
an individual is officially representing the community in public spaces.
Examples of representing our community include using an official e-mail address,
posting via an official social media account, or acting as an appointed
representative at an online or offline event.
## Enforcement
Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported to the community leaders responsible for enforcement at mfem@llnl.gov.
All complaints will be reviewed and investigated promptly and fairly.
All community leaders are obligated to respect the privacy and security of the
reporter of any incident. Anyone involved in the reported behavior will recuse
themselves from the investigation and decision making about the resolution of
the complaint.
## Enforcement Guidelines
Community leaders will follow these Community Impact Guidelines in determining
the consequences for any action they deem in violation of this Code of Conduct:
### 1. Correction
**Community Impact**: Use of inappropriate language or other behavior deemed
unprofessional or unwelcome in the community.
**Consequence**: A private, written warning from community leaders, providing
clarity around the nature of the violation and an explanation of why the
behavior was inappropriate. A public apology may be requested.
### 2. Warning
**Community Impact**: A violation through a single incident or series of
actions.
**Consequence**: A warning with consequences for continued behavior. No
interaction with the people involved, including unsolicited interaction with
those enforcing the Code of Conduct, for a specified period of time. This
includes avoiding interactions in community spaces as well as external channels
like social media. Violating these terms may lead to a temporary or permanent
ban.
### 3. Temporary Ban
**Community Impact**: A serious violation of community standards, including
sustained inappropriate behavior.
**Consequence**: A temporary ban from any sort of interaction or public
communication with the community for a specified period of time. No public or
private interaction with the people involved, including unsolicited interaction
with those enforcing the Code of Conduct, is allowed during this period.
Violating these terms may lead to a permanent ban.
### 4. Permanent Ban
**Community Impact**: Demonstrating a pattern of violation of community
standards, including sustained inappropriate behavior, harassment of an
individual, or aggression toward or disparagement of classes of individuals.
**Consequence**: A permanent ban from any sort of public interaction within the
community.
## Attribution
This Code of Conduct is adapted from the [Contributor Covenant][homepage],
version 2.1, available at
[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
Community Impact Guidelines were inspired by
[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
For answers to common questions about this code of conduct, see the FAQ at
[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
[https://www.contributor-covenant.org/translations][translations].
[homepage]: https://www.contributor-covenant.org
[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
[Mozilla CoC]: https://github.com/mozilla/diversity
[FAQ]: https://www.contributor-covenant.org/faq
[translations]: https://www.contributor-covenant.org/translations
+4
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@@ -21,6 +21,9 @@ documentation; new examples and miniapps; HPC performance improvements; etc.
MFEM is distributed under the terms of the BSD-3 license. All new contributions
must be made under this license.
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
in the MFEM community, you agree to abide by its rules.
If you plan on contributing to MFEM, consider reviewing the
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
already exists for your desired feature or the bug you ran into. Use a pull
@@ -138,6 +141,7 @@ The MFEM source code has the following structure:
│ ├── tools
│ └── toys
└── tests
├── benchmarks
├── convergence
├── gitlab
├── mem_manager
+3 -3
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@@ -12,6 +12,9 @@ to enable high-performance scalable finite element discretization research and
application development on a wide variety of platforms, ranging from laptops to
supercomputers.
We welcome contributions and feedback from the community. Please see the file
CONTRIBUTING.md for additional details about our development process.
* For building instructions, see the file INSTALL, or type "make help".
* Copyright and licensing information can be found in files LICENSE and NOTICE.
@@ -19,9 +22,6 @@ supercomputers.
* The best starting point for new users interested in MFEM's features is to
review the examples and miniapps at https://mfem.org/examples.
* Developers interested in contributing to the library, should read the
instructions and documentation in the CONTRIBUTING.md file.
Conceptually, MFEM can be viewed as a finite element toolbox that provides the
building blocks for developing finite element algorithms in a manner similar to
that of MATLAB for linear algebra methods. In particular, MFEM provides support
+1 -1
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@@ -428,7 +428,7 @@ GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
# CUDA library configuration
CUDA_OPT =
CUDA_LIB = -lcusparse
CUDA_LIB = -lcusparse -lnvToolsExt
# HIP library configuration (currently not needed)
HIP_OPT =
+69 -5
View File
@@ -120,8 +120,8 @@ int main(int argc, char *argv[])
// largest number that gives a final mesh with no more than 50,000
// elements.
{
int ref_levels =
(int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
const int NE = Device::IsEnabled() ? 1e5 : 50000.;
const int ref_levels = (int)floor(log(NE/mesh.GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
@@ -171,6 +171,7 @@ int main(int argc, char *argv[])
LinearForm b(&fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
b.Assemble();
// 8. Define the solution vector x as a finite element grid function
@@ -184,7 +185,10 @@ int main(int argc, char *argv[])
// domain integrator.
BilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
// 'Default' E2E kernel
//a.AddDomainIntegrator(new DiffusionIntegrator(one));
// Can be E2E, L2L, libCeed, etc.
a.AddDomainIntegrator(new MassIntegrator(one));
// 10. Assemble the bilinear form and the corresponding linear system,
// applying any necessary transformations such as: eliminating boundary
@@ -197,7 +201,7 @@ int main(int argc, char *argv[])
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
cout << "Size of linear system: " << A->Height() << endl;
//cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (!pa)
@@ -223,10 +227,70 @@ int main(int argc, char *argv[])
ceed::AlgebraicSolver M(a, ess_tdof_list);
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
}
else
/*else
{
OperatorJacobiSmoother M(a, ess_tdof_list);
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
}*/
else
{
const int myid = 0;
const int max_it = 50;
const int print_lvl = -1;
const double rtol = 1e-12;
CGSolver cg;
cg.SetRelTol(rtol);
cg.SetOperator(*A);
// Warm-up CG solve (in case of JIT to avoid timing it)
{
Vector Y(X);
cg.SetMaxIter(2);
cg.SetPrintLevel(-1);
cg.Mult(B, Y);
MFEM_DEVICE_SYNC;
}
// benchmark this problem
{
tic_toc.Clear();
cg.SetMaxIter(max_it);
cg.SetPrintLevel(print_lvl);
{
tic_toc.Start();
cg.Mult(B, X);
MFEM_DEVICE_SYNC;
tic_toc.Stop();
}
}
// Final norm check
const double final_norm = cg.GetFinalNorm();
MFEM_VERIFY(final_norm < sqrt(rtol),
"FinalNorm (" << final_norm << ") Error!");
// Number of iteration check
const int num_iter = cg.GetNumIterations();
MFEM_VERIFY(num_iter <= max_it,
"NumIterations (" << num_iter << ") Error!");
const double rt = tic_toc.RealTime();
const double rt_min = rt, rt_max = rt;
const int dofs = fespace.GetVSize();
const int cg_iter = cg.GetNumIterations();
const double mdofs_max = ((1e-6 * dofs) * cg_iter) / rt_max;
const double mdofs_min = ((1e-6 * dofs) * cg_iter) / rt_min;
if (myid == 0)
{
mfem::out << "Total CG time: " << rt_max << " (" << rt_min << ") sec."
<< std::endl;
mfem::out << "Time per CG step: "
<< rt_max / cg_iter << " ("
<< rt_min / cg_iter << ") sec." << std::endl;
mfem::out << "\033[32m";
mfem::out << "\"DOFs/sec\" in CG: " << mdofs_max << " ("
<< mdofs_min << ") million.";
mfem::out << "\033[m" << std::endl;
}
}
}
else
+13 -12
View File
@@ -149,7 +149,7 @@ void InitialDeformation(const Vector &x, Vector &y);
void InitialVelocity(const Vector &x, Vector &v);
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -376,10 +376,10 @@ int main(int argc, char *argv[])
}
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -389,24 +389,25 @@ void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "solution\n" << *mesh << *field;
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jl\n"; // turn off perspective and light
os << "view 0 0\n"; // view from top
os << "keys jl\n"; // turn off perspective and light
}
out << "keys cm\n"; // show colorbar and mesh
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
out << "pause\n";
os << "keys cm\n"; // show colorbar and mesh
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
os << "pause\n";
}
out << flush;
os << flush;
}
+17 -13
View File
@@ -154,7 +154,8 @@ void InitialDeformation(const Vector &x, Vector &y);
void InitialVelocity(const Vector &x, Vector &v);
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -438,10 +439,11 @@ int main(int argc, char *argv[])
return 0;
}
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -451,25 +453,27 @@ void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "parallel " << mesh->GetNRanks() << " " << mesh->GetMyRank() << "\n";
out << "solution\n" << *mesh << *field;
os << "parallel " << mesh->GetNRanks()
<< " " << mesh->GetMyRank() << "\n";
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jl\n"; // turn off perspective and light
os << "view 0 0\n"; // view from top
os << "keys jl\n"; // turn off perspective and light
}
out << "keys cm\n"; // show colorbar and mesh
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
out << "pause\n";
os << "keys cm\n"; // show colorbar and mesh
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
os << "pause\n";
}
out << flush;
os << flush;
}
+10 -10
View File
@@ -32,7 +32,7 @@ private:
mutable DenseTensor flux;
mutable Vector z;
void GetFlux(const DenseMatrix &state, DenseTensor &flux) const;
void GetFlux(const DenseMatrix &state_, DenseTensor &flux_) const;
public:
FE_Evolution(FiniteElementSpace &vfes_,
@@ -256,26 +256,26 @@ inline double ComputeMaxCharSpeed(const Vector &state, const int dim)
}
// Compute the flux at solution nodes.
void FE_Evolution::GetFlux(const DenseMatrix &x, DenseTensor &flux) const
void FE_Evolution::GetFlux(const DenseMatrix &x_, DenseTensor &flux_) const
{
const int dof = flux.SizeI();
const int dim = flux.SizeJ();
const int flux_dof = flux_.SizeI();
const int flux_dim = flux_.SizeJ();
for (int i = 0; i < dof; i++)
for (int i = 0; i < flux_dof; i++)
{
for (int k = 0; k < num_equation; k++) { state(k) = x(i, k); }
ComputeFlux(state, dim, f);
for (int k = 0; k < num_equation; k++) { state(k) = x_(i, k); }
ComputeFlux(state, flux_dim, f);
for (int d = 0; d < dim; d++)
for (int d = 0; d < flux_dim; d++)
{
for (int k = 0; k < num_equation; k++)
{
flux(i, d, k) = f(k, d);
flux_(i, d, k) = f(k, d);
}
}
// Update max char speed
const double mcs = ComputeMaxCharSpeed(state, dim);
const double mcs = ComputeMaxCharSpeed(state, flux_dim);
if (mcs > max_char_speed) { max_char_speed = mcs; }
}
}
+13 -11
View File
@@ -171,7 +171,7 @@ public:
};
// Visualization driver
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -542,10 +542,10 @@ RubberOperator::~RubberOperator()
// Inline visualization
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -555,23 +555,25 @@ void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "solution\n" << *mesh << *field;
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jlA\n"; // turn off perspective and light, +anti-aliasing
os << "view 0 0\n"; // view from top
// turn off perspective and light, +anti-aliasing
os << "keys jlA\n";
}
out << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
os << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
}
out << flush;
os << flush;
}
void ReferenceConfiguration(const Vector &x, Vector &y)
+17 -12
View File
@@ -185,7 +185,8 @@ public:
};
// Visualization driver
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -617,10 +618,11 @@ RubberOperator::~RubberOperator()
// Inline visualization
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -630,24 +632,27 @@ void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "parallel " << mesh->GetNRanks() << " " << mesh->GetMyRank() << "\n";
out << "solution\n" << *mesh << *field;
os << "parallel " << mesh->GetNRanks() << " " << mesh->GetMyRank() <<
"\n";
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jlA\n"; // turn off perspective and light, +anti-aliasing
os << "view 0 0\n"; // view from top
// turn off perspective and light, +anti-aliasing
os << "keys jlA\n";
}
out << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
os << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
}
out << flush;
os << flush;
}
void ReferenceConfiguration(const Vector &x, Vector &y)
+62 -6
View File
@@ -128,7 +128,7 @@ int main(int argc, char *argv[])
// more than 10,000 elements.
{
int ref_levels =
(int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
(int)floor(log(1000./mesh.GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
@@ -197,6 +197,7 @@ int main(int argc, char *argv[])
ParLinearForm b(&fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
b.Assemble();
// 10. Define the solution vector x as a parallel finite element grid
@@ -210,7 +211,8 @@ int main(int argc, char *argv[])
// Diffusion domain integrator.
ParBilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
//a.AddDomainIntegrator(new DiffusionIntegrator(one));
a.AddDomainIntegrator(new MassIntegrator(one));
// 12. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
@@ -245,13 +247,67 @@ int main(int argc, char *argv[])
{
prec = new HypreBoomerAMG;
}
const int max_it = 50;
const int print_lvl = -1;
const double rtol = 1e-12;
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
cg.SetRelTol(rtol);
//cg.SetMaxIter(max_it);
//cg.SetPrintLevel(print_lvl);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(*A);
cg.Mult(B, X);
// Warm-up CG solve (in case of JIT to avoid timing it)
{
Vector Y(X);
cg.SetMaxIter(2);
cg.SetPrintLevel(-1);
cg.Mult(B, Y);
MFEM_DEVICE_SYNC;
}
// benchmark this problem
{
tic_toc.Clear();
cg.SetMaxIter(max_it);
cg.SetPrintLevel(print_lvl);
{
tic_toc.Start();
cg.Mult(B, X);
MFEM_DEVICE_SYNC;
tic_toc.Stop();
}
}
// Final norm check
const double final_norm = cg.GetFinalNorm();
MFEM_VERIFY(final_norm < sqrt(rtol),
"FinalNorm (" << final_norm << ") Error!");
// Number of iteration check
const int num_iter = cg.GetNumIterations();
MFEM_VERIFY(num_iter <= max_it,
"NumIterations (" << num_iter << ") Error!");
const double rt = tic_toc.RealTime();
const double rt_min = rt, rt_max = rt;
HYPRE_BigInt dofs = fespace.GlobalTrueVSize();
const int cg_iter = cg.GetNumIterations();
const double mdofs_max = ((1e-6 * dofs) * cg_iter) / rt_max;
const double mdofs_min = ((1e-6 * dofs) * cg_iter) / rt_min;
if (myid == 0)
{
mfem::out << "Total CG time: " << rt_max << " (" << rt_min << ") sec."
<< std::endl;
mfem::out << "Time per CG step: "
<< rt_max / cg_iter << " ("
<< rt_min / cg_iter << ") sec." << std::endl;
mfem::out << "\033[32m";
mfem::out << "\"DOFs/sec\" in CG: " << mdofs_max << " ("
<< mdofs_min << ") million.";
mfem::out << "\033[m" << std::endl;
}
//cg.Mult(B, X);
delete prec;
// 14. Recover the parallel grid function corresponding to X. This is the
+19 -18
View File
@@ -75,7 +75,7 @@ Mesh * GenerateSerialMesh(int ref);
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
double IntegrateBC(const GridFunction &sol, const Array<int> &bdr_marker,
double alpha, double beta, double gamma,
double &err);
double &error);
int main(int argc, char *argv[])
{
@@ -302,26 +302,26 @@ int main(int argc, char *argv[])
{
// Integrate the solution on the Dirichlet boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, err);
double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
bool hom_dbc = (dbc_val == 0.0);
err /= hom_dbc ? 1.0 : fabs(dbc_val);
error /= hom_dbc ? 1.0 : fabs(dbc_val);
mfem::out << "Average of solution on Gamma_dbc:\t"
<< avg << ", \t"
<< (hom_dbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
// to the expected value.
double err, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, err);
double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
bool hom_nbc = (nbc_val == 0.0);
err /= hom_nbc ? 1.0 : fabs(nbc_val);
error /= hom_nbc ? 1.0 : fabs(nbc_val);
mfem::out << "Average of n.Grad(u) on Gamma_nbc:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the homogeneous Neumann boundary and compare to
@@ -330,25 +330,26 @@ int main(int argc, char *argv[])
nbc0_bdr = 0;
nbc0_bdr[3] = 1;
double err, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, err);
double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
bool hom_nbc = true;
mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, err);
double error;
double avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, error);
bool hom_rbc = (rbc_b_val == 0.0);
err /= hom_rbc ? 1.0 : fabs(rbc_b_val);
error /= hom_rbc ? 1.0 : fabs(rbc_b_val);
mfem::out << "Average of n.Grad(u)+a*u on Gamma_rbc:\t"
<< avg << ", \t"
<< (hom_rbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
// 14. Save the refined mesh and the solution. This output can be viewed
@@ -637,11 +638,11 @@ Mesh * GenerateSerialMesh(int ref)
double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
double alpha, double beta, double gamma,
double &err)
double &error)
{
double nrm = 0.0;
double avg = 0.0;
err = 0.0;
error = 0.0;
const bool a_is_zero = alpha == 0.0;
const bool b_is_zero = beta == 0.0;
@@ -705,20 +706,20 @@ double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
// Integrate |alpha * n.Grad(x) + beta * x - gamma|^2
val -= gamma;
err += (val*val) * ip.weight * face_weight;
error += (val*val) * ip.weight * face_weight;
}
}
// Normalize by the length of the boundary
if (std::abs(nrm) > 0.0)
{
err /= nrm;
error /= nrm;
avg /= nrm;
}
// Compute l2 norm of the error in the boundary condition (negative
// quadrature weights may produce negative 'err')
err = (err >= 0.0) ? sqrt(err) : -sqrt(-err);
// quadrature weights may produce negative 'error')
error = (error >= 0.0) ? sqrt(error) : -sqrt(-error);
// Return the average value of alpha * n.Grad(x) + beta * x
return avg;
+17 -16
View File
@@ -75,7 +75,7 @@ Mesh * GenerateSerialMesh(int ref);
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
double IntegrateBC(const ParGridFunction &sol, const Array<int> &bdr_marker,
double alpha, double beta, double gamma,
double &err);
double &error);
int main(int argc, char *argv[])
{
@@ -321,26 +321,26 @@ int main(int argc, char *argv[])
{
// Integrate the solution on the Dirichlet boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, err);
double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
bool hom_dbc = (dbc_val == 0.0);
err /= hom_dbc ? 1.0 : fabs(dbc_val);
error /= hom_dbc ? 1.0 : fabs(dbc_val);
mfem::out << "Average of solution on Gamma_dbc:\t"
<< avg << ", \t"
<< (hom_dbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
// to the expected value.
double err, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, err);
double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
bool hom_nbc = (nbc_val == 0.0);
err /= hom_nbc ? 1.0 : fabs(nbc_val);
error /= hom_nbc ? 1.0 : fabs(nbc_val);
mfem::out << "Average of n.Grad(u) on Gamma_nbc:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the homogeneous Neumann boundary and compare to
@@ -349,25 +349,26 @@ int main(int argc, char *argv[])
nbc0_bdr = 0;
nbc0_bdr[3] = 1;
double err, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, err);
double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
bool hom_nbc = true;
mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, err);
double error, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val,
error);
bool hom_rbc = (rbc_b_val == 0.0);
err /= hom_rbc ? 1.0 : fabs(rbc_b_val);
error /= hom_rbc ? 1.0 : fabs(rbc_b_val);
mfem::out << "Average of n.Grad(u)+a*u on Gamma_rbc:\t"
<< avg << ", \t"
<< (hom_rbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
// 15. Save the refined mesh and the solution in parallel. This output can be
@@ -667,11 +668,11 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
double loc_vals[3];
double &nrm = loc_vals[0];
double &avg = loc_vals[1];
double &err = loc_vals[2];
double &error = loc_vals[2];
nrm = 0.0;
avg = 0.0;
err = 0.0;
error = 0.0;
const bool a_is_zero = alpha == 0.0;
const bool b_is_zero = beta == 0.0;
@@ -735,7 +736,7 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
// Integrate |alpha * n.Grad(x) + beta * x - gamma|^2
val -= gamma;
err += (val*val) * ip.weight * face_weight;
error += (val*val) * ip.weight * face_weight;
}
}
@@ -754,7 +755,7 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
}
// Compute l2 norm of the error in the boundary condition (negative
// quadrature weights may produce negative 'err')
// quadrature weights may produce negative 'error')
glb_err = (glb_err >= 0.0) ? sqrt(glb_err) : -sqrt(-glb_err);
// Return the average value of alpha * n.Grad(x) + beta * x
+2 -2
View File
@@ -167,9 +167,9 @@ int main(int argc, char *argv[])
// 13. Compute error in the solution and its flux
FunctionCoefficient uCoef(uExact);
double err = x.ComputeL2Error(uCoef);
double error = x.ComputeL2Error(uCoef);
cout << "|u - u_h|_2 = " << err << endl;
cout << "|u - u_h|_2 = " << error << endl;
FiniteElementSpace flux_fespace(mesh, &fec, 3);
GridFunction flux(&flux_fespace);
+2 -2
View File
@@ -197,9 +197,9 @@ int main(int argc, char *argv[])
// 15. Compute error in the solution and its flux
FunctionCoefficient uCoef(uExact);
double err = x.ComputeL2Error(uCoef);
double error = x.ComputeL2Error(uCoef);
if (myid == 0) { cout << "|u - u_h|_2 = " << err << endl; }
if (myid == 0) { cout << "|u - u_h|_2 = " << error << endl; }
ParFiniteElementSpace flux_fespace(&pmesh, &fec, 3);
ParGridFunction flux(&flux_fespace);
+2 -2
View File
@@ -255,10 +255,10 @@ int main(int argc, char *argv[])
// 15. Compute and print the L^2 norm of the error.
{
double err = x.ComputeL2Error(E);
double error = x.ComputeL2Error(E);
if (myid == 0)
{
cout << "\n|| E_h - E ||_{L^2} = " << err << '\n' << endl;
cout << "\n|| E_h - E ||_{L^2} = " << error << '\n' << endl;
}
}
+2 -2
View File
@@ -256,10 +256,10 @@ int main(int argc, char *argv[])
// 15. Compute and print the L^2 norm of the error.
{
double err = x.ComputeL2Error(F);
double error = x.ComputeL2Error(F);
if (myid == 0)
{
cout << "\n|| F_h - F ||_{L^2} = " << err << '\n' << endl;
cout << "\n|| F_h - F ||_{L^2} = " << error << '\n' << endl;
}
}
+1
View File
@@ -125,6 +125,7 @@ int main(int argc, char *argv[])
BilinearFormIntegrator *integ = new DiffusionIntegrator(one);
a.AddDomainIntegrator(integ);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
// 7. The solution vector x and the associated finite element grid function
// will be maintained over the AMR iterations. We initialize it to zero.
+1
View File
@@ -202,6 +202,7 @@ int main(int argc, char *argv[])
BilinearFormIntegrator *integ = new DiffusionIntegrator(one);
a.AddDomainIntegrator(integ);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
// 12. The solution vector x and the associated finite element grid function
// will be maintained over the AMR iterations. We initialize it to zero.
+2 -2
View File
@@ -282,10 +282,10 @@ int main(int argc, char *argv[])
delete b;
// 12. Compute and print the L^2 norm of the error.
double err = x.ComputeL2Error(sol_coef);
double error = x.ComputeL2Error(sol_coef);
if (myid == 0)
{
cout << "\nL2 norm of error: " << err << endl;
cout << "\nL2 norm of error: " << error << endl;
}
// 13. Save the refined mesh and the solution. This output can be viewed
+21
View File
@@ -21,6 +21,8 @@ set(SRCS
bilininteg_dgtrace_ea.cpp
bilininteg_diffusion_mf.cpp
bilininteg_diffusion_pa.cpp
bilininteg_diffusion_pa_diag_fast.cpp
bilininteg_diffusion_pa_fast.cpp
bilininteg_diffusion_ea.cpp
bilininteg_divergence.cpp
bilininteg_hcurl.cpp
@@ -29,6 +31,11 @@ set(SRCS
bilininteg_gradient.cpp
bilininteg_mass_mf.cpp
bilininteg_mass_pa.cpp
bilininteg_mass_pa_diag.cpp
bilininteg_mass_pa_fast.cpp
bilininteg_mass_pa_fast_amd.cpp
bilininteg_mass_pa_fast_hip.cpp
bilininteg_mass_pa_fast_diag.cpp
bilininteg_mass_ea.cpp
bilininteg_transpose_ea.cpp
bilininteg_vecdiffusion.cpp
@@ -68,7 +75,16 @@ set(SRCS
ceed/operator.cpp
ceed/util.cpp
linearform.cpp
linearform_ext.cpp
lininteg.cpp
lininteg_domain.cpp
lininteg_domain_grad.cpp
lininteg_vector_domain.cpp
lininteg_vector_domain_grad.cpp
lor.cpp
lor_assembly.cpp
lor_assembly_ker.cpp
lor_assembly_ni3.cpp
multigrid.cpp
nonlinearform.cpp
nonlinearform_ext.cpp
@@ -161,7 +177,12 @@ set(HDRS
ceed/operator.hpp
ceed/util.hpp
linearform.hpp
linearform_ext.hpp
lininteg.hpp
lininteg_domain.hpp
lininteg_domain_grad.hpp
lor.hpp
lor_assembly.hpp
multigrid.hpp
nonlinearform.hpp
nonlinearform_ext.hpp
+69 -18
View File
@@ -318,14 +318,31 @@ void PABilinearFormExtension::Assemble()
void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
{
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int integrators_size = integrators.Size();
const int iSz = integrators.Size();
if (elem_restrict && !DeviceCanUseCeed())
// Scan the different action types we need to launch
bool E2E_actions = false,
L2L_actions = false;
for (int i = 0; i < integrators_size; ++i)
{
const ActionType action_type = integrators[i]->GetActionType();
E2E_actions |= action_type == ActionType::E2E;
L2L_actions |= action_type == ActionType::L2L;
}
// typically this is a large vector, so store on device
y.UseDevice(true);
// If E2E kernels are present, do their computation on local vectors
if (E2E_actions && elem_restrict)
{
localY = 0.0;
for (int i = 0; i < iSz; ++i)
for (int i = 0; i < integrators_size; ++i)
{
integrators[i]->AssembleDiagonalPA(localY);
if (integrators[i]->GetActionType() == ActionType::E2E)
{
integrators[i]->AssembleDiagonalPA(localY);
}
}
const ElementRestriction* H1elem_restrict =
dynamic_cast<const ElementRestriction*>(elem_restrict);
@@ -340,11 +357,20 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
}
else
{
y.UseDevice(true); // typically this is a large vector, so store on device
// otherwise, initialize the y output
y = 0.0;
for (int i = 0; i < iSz; ++i)
}
// Continue with the computation of the L2L integrators
if (L2L_actions || !elem_restrict)
{
for (int i = 0; i < integrators_size; ++i)
{
integrators[i]->AssembleDiagonalPA(y);
const ActionType action = integrators[i]->GetActionType();
if (action == ActionType::L2L || !elem_restrict)
{
integrators[i]->AssembleDiagonalPA(y);
}
}
}
}
@@ -383,27 +409,52 @@ void PABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int integrators_size = integrators.Size();
const int iSz = integrators.Size();
if (DeviceCanUseCeed() || !elem_restrict)
// Scan the different action types we need to launch
bool E2E_actions = false,
L2L_actions = false;
for (int i = 0; i < integrators_size; ++i)
{
y.UseDevice(true); // typically this is a large vector, so store on device
y = 0.0;
for (int i = 0; i < iSz; ++i)
{
integrators[i]->AddMultPA(x, y);
}
const ActionType action_type = integrators[i]->GetActionType();
E2E_actions |= action_type == ActionType::E2E;
L2L_actions |= action_type == ActionType::L2L;
}
else
// typically this is a large vector, so store on device
y.UseDevice(true);
// If E2E kernels are present, do their computation on local vectors
if (E2E_actions && elem_restrict)
{
elem_restrict->Mult(x, localX);
localY = 0.0;
for (int i = 0; i < iSz; ++i)
for (int i = 0; i < integrators_size; ++i)
{
integrators[i]->AddMultPA(localX, localY);
if (integrators[i]->GetActionType() == ActionType::E2E)
{
integrators[i]->AddMultPA(localX, localY);
}
}
elem_restrict->MultTranspose(localY, y);
}
else
{
// otherwise, initialize the y output
y = 0.0;
}
// Continue with the computation of the L2L integrators
if (L2L_actions || !elem_restrict)
{
for (int i = 0; i < integrators_size; ++i)
{
if (integrators[i]->GetActionType() == ActionType::L2L || !elem_restrict)
{
integrators[i]->AddMultPA(x, y);
}
}
}
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
const int iFISz = intFaceIntegrators.Size();
+5 -1
View File
@@ -244,6 +244,8 @@ public:
Vector &flux, Vector *d_energy = NULL)
{ return 0.0; }
virtual bool SupportsBatchedLOR() const { return false; }
virtual ~BilinearFormIntegrator() { }
};
@@ -1977,7 +1979,7 @@ private:
const DofToQuad *maps; ///< Not owned
const GeometricFactors *geom; ///< Not owned
int dim, ne, dofs1D, quad1D;
Vector pa_data;
Vector pa_data, CoG;
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
public:
@@ -2058,6 +2060,8 @@ public:
const FiniteElement &test_fe);
bool SupportsCeed() const { return DeviceCanUseCeed(); }
bool SupportsBatchedLOR() const { return true; }
};
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
+2 -2
View File
@@ -768,8 +768,8 @@ void SmemPAConvectionApply3D(const int ne,
void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// Assumes tensor-product elements
Mesh *mesh = fes.GetMesh();
const FiniteElement &el = *fes.GetFE(0);
+189 -2
View File
@@ -9,18 +9,45 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#define MFEM_DEBUG_COLOR 87
#include "../general/debug.hpp"
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/diffusion.hpp"
#include <string>
#define MFEM_NVTX_COLOR Olive
#include "../general/nvtx.hpp"
using namespace std;
namespace mfem
{
void NDK_PADiffusionAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symm,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y);
// PA Diffusion Integrator
void NDK_PADiffusionApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const Vector &CoG,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
// OCCA 2D Assemble kernel
#ifdef MFEM_USE_OCCA
static void OccaPADiffusionSetup2D(const int D1D,
@@ -349,10 +376,115 @@ static void PADiffusionSetup(const int dim,
}
}
////////////////////////////////////////////////////////////////////////////////
template<typename T> MFEM_HOST_DEVICE inline
void HouseholderReflect(T *A, const T *v,
const T b, const int m, const int n,
const int row, const int col)
{
for (int j = 0; j < n; j++)
{
T w = A[0*row + j*col];
for (int i = 1; i < m; i++) { w += v[i] * A[i*row + j*col]; }
A[0*row + j*col] -= b * w;
for (int i = 1; i < m; i++) { A[i*row + j*col] -= b * w * v[i]; }
}
}
template<int Q1D, typename T> MFEM_HOST_DEVICE inline
void HouseholderApplyQ(T *A, const T *Q, const T *tau,
const int k, const int row, const int col)
{
T v[Q1D];
for (int ii=0; ii<k; ii++)
{
const int i = k-1-ii;
for (int j = i+1; j < Q1D; j++) { v[j] = Q[j*k+i]; }
// Apply Householder reflector (I - tau v v^T) coG^T
HouseholderReflect(&A[i*row], &v[i], tau[i], Q1D-i, Q1D, row, col);
}
}
template<int D1D, int Q1D, typename T> MFEM_HOST_DEVICE inline
void QRFactorization(T *mat, T *tau)
{
T v[Q1D];
DeviceMatrix B(mat, D1D, Q1D);
for (int i = 0; i < D1D; i++)
{
// Calculate Householder vector, magnitude
T sigma = 0.0;
v[i] = B(i,i);
for (int j = i + 1; j < Q1D; j++)
{
v[j] = B(i,j);
sigma += v[j] * v[j];
}
T norm = std::sqrt(v[i]*v[i] + sigma); // norm of v[i:m]
T Rii = -copysign(norm, v[i]);
v[i] -= Rii;
// norm of v[i:m] after modification above and scaling below
// norm = sqrt(v[i]*v[i] + sigma) / v[i];
// tau = 2 / (norm*norm)
tau[i] = 2 * v[i]*v[i] / (v[i]*v[i] + sigma);
for (int j=i+1; j<Q1D; j++) { v[j] /= v[i]; }
// Apply Householder reflector to lower right panel
HouseholderReflect(&mat[i*D1D+i+1], &v[i], tau[i],
Q1D-i, D1D-i-1, D1D, 1);
// Save v
B(i,i) = Rii;
for (int j=i+1; j<Q1D; j++) { B(i,j) = v[j]; }
}
}
template<int D1D, int Q1D>
void GetCollocatedGrad(const ConstDeviceMatrix &b,
const ConstDeviceMatrix &g,
const DeviceMatrix &CoG)
{
double tau[Q1D];
double B1d[Q1D*D1D];
double G1d[Q1D*D1D];
DeviceMatrix B(B1d, D1D, Q1D);
DeviceMatrix G(G1d, D1D, Q1D);
for (int d = 0; d < D1D; d++)
{
for (int q = 0; q < Q1D; q++)
{
B(d,q) = b(q,d);
G(d,q) = g(q,d);
}
}
QRFactorization<D1D,Q1D>(B1d, tau);
// Apply Rinv, colograd1d = grad1d Rinv
for (int i = 0; i < Q1D; i++)
{
CoG(0,i) = G(0,i)/B(0,0);
for (int j = 1; j < D1D; j++)
{
CoG(j,i) = G(j,i);
for (int k = 0; k < j; k++) { CoG(j,i) -= B(j,k)*CoG(k,i); }
CoG(j,i) /= B(j,j);
}
for (int j = D1D; j < Q1D; j++) { CoG(j,i) = 0.0; }
}
// Apply Qtranspose, colograd = colograd Qtranspose
HouseholderApplyQ<Q1D>((double*)CoG, B1d, tau, D1D, 1, Q1D);
}
////////////////////////////////////////////////////////////////////////////////
void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// If device options allow fast kernels, set the action type to L2L
action_type =
(Device::FastKernelsEnabled())?
ActionType::L2L: // all fast kernel are L2L
ActionType::E2E; // default is E2E
// Assuming the same element type
fespace = &fes;
Mesh *mesh = fes.GetMesh();
@@ -365,6 +497,7 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
MFEM_VERIFY(!VQ && !MQ && !SMQ,
"Only scalar coefficient supported for DiffusionIntegrator"
" with libCEED");
action_type = ActionType::L2L;
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
return;
}
@@ -490,6 +623,40 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
}
}
if (Device::FastKernelsEnabled())
{
NVTX("CoG");
const int D1D = dofs1D;
const int Q1D = quad1D;
const int id = (D1D << 4) | Q1D;
CoG.SetSize(Q1D*Q1D);
CoG.UseDevice(true);
assert(CoG.UseDevice());
void (*KoG)(const ConstDeviceMatrix &b,
const ConstDeviceMatrix &g,
const DeviceMatrix &CoG) = nullptr;
switch (id) // orders 1~8
{
case 0x23: KoG=GetCollocatedGrad<2,3>; break; // 1
case 0x34: KoG=GetCollocatedGrad<3,4>; break; // 2
case 0x45: KoG=GetCollocatedGrad<4,5>; break; // 3
case 0x56: KoG=GetCollocatedGrad<5,6>; break; // 4
case 0x67: KoG=GetCollocatedGrad<6,7>; break; // 5
case 0x78: KoG=GetCollocatedGrad<7,8>; break; // 6
//case 0x89: KoG=GetCollocatedGrad<8,9>; break; // 7
//case 0x9A: KoG=GetCollocatedGrad<9,10>; break; // 8
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
KoG(ConstDeviceMatrix(maps->B.HostRead(),Q1D,D1D),
ConstDeviceMatrix(maps->G.HostRead(),Q1D,D1D),
DeviceMatrix(CoG.HostReadWrite(),Q1D,Q1D));
}
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne, mt);
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeffDim, ne, ir->GetWeights(),
geom->J, coeff, pa_data);
@@ -869,6 +1036,7 @@ static void SmemPADiffusionDiagonal3D(const int NE,
}
}
}
MFEM_SYNC_THREAD;
}
}
});
@@ -925,6 +1093,11 @@ void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
{
ceedOp->GetDiagonal(diag);
}
else if (Device::FastKernelsEnabled())
{
NDK_PADiffusionAssembleDiagonal(dim, dofs1D, quad1D, ne, symmetric,
fespace, maps, pa_data, diag);
}
else
{
if (pa_data.Size()==0) { AssemblePA(*fespace); }
@@ -1180,6 +1353,7 @@ static void SmemPADiffusionApply2D(const int NE,
auto D = Reshape(d_.Read(), Q1D*Q1D, symmetric ? 3 : 4, NE);
auto x = Reshape(x_.Read(), D1D, D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
@@ -1220,6 +1394,7 @@ static void SmemPADiffusionApply2D(const int NE,
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
@@ -1545,6 +1720,7 @@ static void SmemPADiffusionApply3D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
MFEM_NVTX;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
@@ -1595,6 +1771,7 @@ static void SmemPADiffusionApply3D(const int NE,
}
}
}
MFEM_SYNC_THREAD;
if (MFEM_THREAD_ID(z) == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
@@ -1791,6 +1968,7 @@ static void SmemPADiffusionApply3D(const int NE,
}
}
}
MFEM_SYNC_THREAD;
});
}
@@ -1830,8 +2008,11 @@ static void PADiffusionApply(const int dim,
switch (ID)
{
case 0x22: return SmemPADiffusionApply2D<2,2,16>(NE,symm,B,G,D,X,Y);
case 0x23: return SmemPADiffusionApply2D<2,3,16>(NE,symm,B,G,D,X,Y);
case 0x33: return SmemPADiffusionApply2D<3,3,16>(NE,symm,B,G,D,X,Y);
case 0x34: return SmemPADiffusionApply2D<3,4,16>(NE,symm,B,G,D,X,Y);
case 0x44: return SmemPADiffusionApply2D<4,4,8>(NE,symm,B,G,D,X,Y);
case 0x45: return SmemPADiffusionApply2D<4,5,8>(NE,symm,B,G,D,X,Y);
case 0x55: return SmemPADiffusionApply2D<5,5,8>(NE,symm,B,G,D,X,Y);
case 0x66: return SmemPADiffusionApply2D<6,6,4>(NE,symm,B,G,D,X,Y);
case 0x77: return SmemPADiffusionApply2D<7,7,4>(NE,symm,B,G,D,X,Y);
@@ -1868,6 +2049,12 @@ void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
{
ceedOp->AddMult(x, y);
}
else if (Device::FastKernelsEnabled())
{
NDK_PADiffusionApply(dim, dofs1D, quad1D, ne, CoG,
fespace, maps,
pa_data, x, y);
}
else
{
PADiffusionApply(dim, dofs1D, quad1D, ne, symmetric,
+186
View File
@@ -0,0 +1,186 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#define MFEM_NVTX_COLOR Pink
#include "../general/nvtx.hpp"
#define MFEM_DEBUG_COLOR 206
#include "../general/debug.hpp"
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/diffusion.hpp"
using namespace std;
namespace mfem
{
// Shared memory PA Diffusion Diagonal 3D kernel
template<int D1D, int Q1D>
static void NDK_SmemPADiffusionDiag3D(const int ndofs,
const int NE,
const bool symmetric,
const int *map_,
const double *b_,
const double *g_,
const double *d_,
double *y_)
{
MFEM_NVTX;
constexpr int DIM = 3;
const auto MAP = Reshape(map_, D1D,D1D,D1D, NE);
auto b = Reshape(b_, Q1D, D1D);
auto g = Reshape(g_, Q1D, D1D);
auto D = Reshape(d_, Q1D*Q1D*Q1D, symmetric ? 6 : 9, NE);
auto Y = Reshape(y_, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
MFEM_SHARED double BG[2][Q1D*D1D];
double (*B)[D1D] = (double (*)[D1D]) (BG+0);
double (*G)[D1D] = (double (*)[D1D]) (BG+1);
MFEM_SHARED double QQD[Q1D][Q1D][D1D];
MFEM_SHARED double QDD[Q1D][D1D][D1D];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
G[q][d] = g(q,d);
}
}
}
MFEM_SYNC_THREAD;
for (int i = 0; i < DIM; ++i)
{
for (int j = 0; j < DIM; ++j)
{
// first tensor contraction, along z direction
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
const int q = qx + (qy + qz * Q1D) * Q1D;
const int ksym = j >= i ?
3 - (3-i)*(2-i)/2 + j:
3 - (3-j)*(2-j)/2 + i;
const int k = symmetric ? ksym : (i*DIM) + j;
const double O = D(q,k,e);
const double Bz = B[qz][dz];
const double Gz = G[qz][dz];
const double L = i==2 ? Gz : Bz;
const double R = j==2 ? Gz : Bz;
QQD[qx][qy][dz] += L * O * R;
}
}
}
}
MFEM_SYNC_THREAD;
// second tensor contraction, along y direction
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
const double By = B[qy][dy];
const double Gy = G[qy][dy];
const double L = i==1 ? Gy : By;
const double R = j==1 ? Gy : By;
QDD[qx][dy][dz] += L * QQD[qx][qy][dz] * R;
}
}
}
}
MFEM_SYNC_THREAD;
// third tensor contraction, along x direction
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
for (int qx = 0; qx < Q1D; ++qx)
{
const double Bx = B[qx][dx];
const double Gx = G[qx][dx];
const double L = i==0 ? Gx : Bx;
const double R = j==0 ? Gx : Bx;
const double lvr = L * QDD[qx][dy][dz] * R;
const int gid = MAP(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y[idx], lvr);
}
}
}
}
MFEM_SYNC_THREAD;
}
}
});
}
void NDK_PADiffusionAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symm,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y)
{
MFEM_NVTX;
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const int *m = ER->GatherMap().Read();
const double *b = maps->B.Read();
const double *g = maps->G.Read();
const double *d = D.Read();
double *y = Y.ReadWrite();
if (dim == 2) { assert(false); }
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return NDK_SmemPADiffusionDiag3D<2,2>(ND,NE,symm,m,b,g,d,y);
case 0x23: return NDK_SmemPADiffusionDiag3D<2,3>(ND,NE,symm,m,b,g,d,y);
case 0x34: return NDK_SmemPADiffusionDiag3D<3,4>(ND,NE,symm,m,b,g,d,y);
case 0x45: return NDK_SmemPADiffusionDiag3D<4,5>(ND,NE,symm,m,b,g,d,y);
case 0x46: return NDK_SmemPADiffusionDiag3D<4,6>(ND,NE,symm,m,b,g,d,y);
case 0x56: return NDK_SmemPADiffusionDiag3D<5,6>(ND,NE,symm,m,b,g,d,y);
case 0x67: return NDK_SmemPADiffusionDiag3D<6,7>(ND,NE,symm,m,b,g,d,y);
case 0x78: return NDK_SmemPADiffusionDiag3D<7,8>(ND,NE,symm,m,b,g,d,y);
//case 0x89: return NDK_SmemPADiffusionDiag3D<8,9>(ND,NE,symm,m,b,g,d,y);
//case 0x9A: return NDK_SmemPADiffusionDiag3D<9,10>(ND,NE,symm,m,b,g,d,y);
default: MFEM_ABORT("Not implemented!");
}
}
MFEM_ABORT("Unknown kernel.");
}
} // namespace mfem
+332
View File
@@ -0,0 +1,332 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#define MFEM_NVTX_COLOR Pink
#include "../general/nvtx.hpp"
#define MFEM_DEBUG_COLOR 206
#include "../general/debug.hpp"
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/diffusion.hpp"
using namespace std;
namespace mfem
{
////////////////////////////////////////////////////////////////////////////////
template<int D1D, int Q1D, int NBZ, int NBK> static
MFEM_GLOBAL MFEM_LAUNCH_BOUNDS(Q1D*Q1D*NBZ,NBK)
void NDK_PADiffApply(const int NE,
const int *MAP,
const double *B,
const double *G,
const double *D,
const double *X,
double *Y)
{
double r_qt, r_q[Q1D];
MFEM_SHARED double s_B[D1D][Q1D];
MFEM_SHARED double s_G[Q1D][Q1D];
MFEM_SHARED double s_Iq[NBZ][Q1D][Q1D][Q1D];
MFEM_SHARED double s_Gqr[NBZ][Q1D][Q1D];
MFEM_SHARED double s_Gqs[NBZ][Q1D][Q1D];
for (int be = MFEM_BLOCK_ID(x); be < (NE+NBZ-1)/NBZ; be += MFEM_GRID_DIM(x))
{
const int tz = MFEM_THREAD_ID(z);
const int e = be * NBZ + tz;
if (e>=NE) { return; }
// Scatter X
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
if (tz == 0) { s_G[j][i] = G[i+Q1D*j]; } // ok with init
if (tz == 0 && j<D1D) { s_B[j][i] = B[i+Q1D*j]; } // ok
if (j<D1D && i<D1D)
{
MFEM_UNROLL(D1D)
for (int k = 0; k < D1D; k++)
{
const int gid = MAP[e*D1D*D1D*D1D + k*D1D*D1D + j*D1D + i];
const int idx = gid >= 0 ? gid : -1 - gid;
r_q[k] = X[idx];
}
}
}
}
MFEM_SYNC_THREAD;
// Grad1X
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k)
{
double u = 0.0;
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c) { u += s_B[c][k] * r_q[c]; }
s_Iq[tz][k][b][a] = u;
}
}
}
MFEM_SYNC_THREAD;
// Grad1Y
MFEM_FOREACH_THREAD(k,y,Q1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b) { r_q[b] = s_Iq[tz][k][b][a]; }
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j)
{
double u = 0.0;
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b) { u += s_B[b][j] * r_q[b]; }
s_Iq[tz][k][j][a] = u;
}
}
}
MFEM_SYNC_THREAD;
// Grad1Z
MFEM_FOREACH_THREAD(k,y,Q1D)
{
MFEM_FOREACH_THREAD(j,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a) { r_q[a] = s_Iq[tz][k][j][a]; }
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i)
{
double u = 0.0;
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a) { u += s_B[a][i] * r_q[a]; }
s_Iq[tz][k][j][i] = u;
}
}
}
MFEM_SYNC_THREAD;
// Flush
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int k = 0; k < Q1D; ++k) { r_q[k] = 0.0; }
}
}
MFEM_SYNC_THREAD;
// Q-Function
MFEM_UNROLL(Q1D)
for (int k = 0; k < Q1D; ++k)
{
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
double qr = 0.0, qs = 0.0, qt = 0.0;
MFEM_UNROLL(Q1D)
for (int m = 0; m < Q1D; ++m)
{
const double Dim = s_G[i][m];
const double Djm = s_G[j][m];
const double Dkm = s_G[k][m];
qr += Dim * s_Iq[tz][k][j][m];
qs += Djm * s_Iq[tz][k][m][i];
qt += Dkm * s_Iq[tz][m][j][i];
}
//(d, Q1D,Q1D,Q1D, 6, NE);
const int ebase = e * 6*Q1D*Q1D*Q1D;
const int gbase = i + j*Q1D + k*Q1D*Q1D;
const double D00 = D[0*Q1D*Q1D*Q1D + gbase + ebase];
const double D01 = D[1*Q1D*Q1D*Q1D + gbase + ebase];
const double D02 = D[2*Q1D*Q1D*Q1D + gbase + ebase];
const double D11 = D[3*Q1D*Q1D*Q1D + gbase + ebase];
const double D12 = D[4*Q1D*Q1D*Q1D + gbase + ebase];
const double D22 = D[5*Q1D*Q1D*Q1D + gbase + ebase];
s_Gqr[tz][j][i] = D00*qr + D01*qs + D02*qt;
s_Gqs[tz][j][i] = D01*qr + D11*qs + D12*qt;
r_qt = D02*qr + D12*qs + D22*qt;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
double Aqtmp = 0.0;
MFEM_UNROLL(Q1D)
for (int m = 0; m < Q1D; ++m)
{
const double Dmi = s_G[m][i];
const double Dmj = s_G[m][j];
const double Dkm = s_G[k][m];
Aqtmp += Dmi * s_Gqr[tz][j][m];
Aqtmp += Dmj * s_Gqs[tz][m][i];
r_q[m] += Dkm * r_qt;
}
r_q[k] += Aqtmp;
}
}
MFEM_SYNC_THREAD;
}
// GradZT
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
double u = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { u += s_B[c][k] * r_q[k]; }
s_Iq[tz][c][j][i] = u;
}
}
}
MFEM_SYNC_THREAD;
// GradYT
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_q[j] = s_Iq[tz][c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double u = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { u += s_B[b][j] * r_q[j]; }
s_Iq[tz][c][b][i] = u;
}
}
}
MFEM_SYNC_THREAD;
// GradXT
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_q[i] = s_Iq[tz][c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double u = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { u += s_B[a][i] * r_q[i]; }
s_Iq[tz][c][b][a] = u;
}
}
}
MFEM_SYNC_THREAD;
// Gather
MFEM_FOREACH_THREAD(j,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,D1D)
{
MFEM_UNROLL(D1D)
for (int k = 0; k < D1D; k++)
{
const int gid = MAP[e*D1D*D1D*D1D + k*D1D*D1D + j*D1D + i];
const int idx = gid >= 0 ? gid : -1 - gid;
const double output = s_Iq[tz][k][j][i];
AtomicAdd(Y[idx], output);
}
}
}
MFEM_SYNC_THREAD;
}
}
void NDK_PADiffusionApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const Vector &CoG,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y)
{
//dbg();
MFEM_NVTX;
assert(dim == 3);
const double *b = maps->B.Read();
const double *d = D.Read();
const double *x = X.Read();
double *y = Y.ReadWrite();
const int id = (D1D << 4) | Q1D;
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction *ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const int *map = ER->GatherMap().Read();
const auto dM = Reshape(map, D1D,D1D,D1D, NE);
const auto dB = Reshape(b, Q1D,D1D);
const auto dG = Reshape(CoG.Read(), Q1D,Q1D);
const auto dD = Reshape(d, Q1D,Q1D,Q1D, 6, NE);
const auto dX = Reshape(x, ND);
auto dY = Reshape(y, ND);
void (*Ker)(const int NE,
const int *MAP,
const double *B,
const double *G,
const double *D,
const double *X,
double *Y) = nullptr;
int NBZ = 1;
switch (id) // orders 1~8
{
case 0x23: Ker=NDK_PADiffApply<2,3,16,5>; NBZ=16; break; // 1
case 0x34: Ker=NDK_PADiffApply<3,4,8,6>; NBZ=8; break; // 2
case 0x45: Ker=NDK_PADiffApply<4,5,4,4>; NBZ=4; break; // 3
case 0x56: Ker=NDK_PADiffApply<5,6,4,3>; NBZ=4; break; // 4
case 0x67: Ker=NDK_PADiffApply<6,7,1,3>; break; // 5
case 0x78: Ker=NDK_PADiffApply<7,8,1,0>; break; // 6
//case 0x89: Ker=NDK_PADiffApply<8,9,1,0>; break; // 7
//case 0x9A: Ker=NDK_PADiffApply<9,10,1,1>; break; // 8
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
MFEM_CONTRACT_VAR(NBZ);
MFEM_LAUNCH_KERNEL(Ker,(NE+NBZ-1)/NBZ,dim3(Q1D,Q1D,NBZ),0,NE,dM,dB,dG,dD,dX,dY);
}
} // namespace mfem
+257 -345
View File
@@ -19,14 +19,49 @@ using namespace std;
namespace mfem
{
// Forward declaration of non-deterministic 'fast' kernels
void NDK_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
void NDK_AMD_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
void NDK_HIP_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
// PA Mass Integrator
// PA Mass Assemble kernel
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// If device options allow fast kernels, set the action type to L2L
action_type =
Device::FastKernelsEnabled() ? ActionType::L2L : ActionType::E2E;
// Assuming the same element type
fespace = &fes;
@@ -38,7 +73,7 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q, action_type);
return;
}
dim = mesh->Dimension();
@@ -154,328 +189,6 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
}
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal2D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QD[MQ1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dy = 0; dy < D1D; ++dy)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
}
}
}
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
for (int qx = 0; qx < Q1D; ++qx)
{
Y(dx,dy,e) += B(qx, dx) * B(qx, dx) * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
static void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QDZ[NBZ][MQ1][MD1];
double (*QD)[MD1] = (double (*)[MD1])(QDZ + tidz);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B[qy][dy] * B[qy][dy] * D(qx, qy, e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
for (int qx = 0; qx < Q1D; ++qx)
{
// might need absolute values on next line
Y(dx,dy,e) += B[qx][dx] * B[qx][dx] * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal3D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QQD[MQ1][MQ1][MD1];
double QDD[MQ1][MD1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int dz = 0; dz < D1D; ++dz)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
}
}
}
}
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B(qy, dy) * B(qy, dy) * QQD[qx][qy][dz];
}
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B(qx, dx) * B(qx, dx) * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void SmemPAMassAssembleDiagonal3D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QQD[MQ1][MQ1][MD1];
MFEM_SHARED double QDD[MQ1][MD1][MD1];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
static void PAMassAssembleDiagonal(const int dim, const int D1D,
const int Q1D, const int NE,
const Array<double> &B,
const Vector &D,
Vector &Y)
{
if (dim == 2)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
{
if (DeviceCanUseCeed())
{
ceedOp->GetDiagonal(diag);
}
else
{
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
}
}
#ifdef MFEM_USE_OCCA
// OCCA PA Mass Apply 2D kernel
static void OccaPAMassApply2D(const int D1D,
@@ -1151,6 +864,159 @@ static void SmemPAMassApply3D(const int NE,
});
}
template<int D1D, int Q1D>
void SmemPAMassApply3D_v1(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
MFEM_CONTRACT_VAR(d1d);
MFEM_CONTRACT_VAR(q1d);
const auto B = Reshape(b_.Read(), Q1D,D1D);
const auto D = Reshape(d_.Read(), Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x_.Read(), D1D,D1D,D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double u[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
s_B[qx][dy] = B(qx,dy);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B(qx,dx);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += X(dx,dy,dz,e) * Bx;
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[dz][dy][qx];
MFEM_UNROLL(D1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] += zyX * s_B[qy][dy]; }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation, Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] += zYX * s_B[qz][dz]; }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
s_q[qz][qy][qx] = u[qz] * D(qx,qy,qz,e);
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * s_B[qz][dz]; }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * s_B[qy][dy]; }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * s_B[qx][dx]; }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double output = u[dx];
Y(dx,dy,dz,e) += output;
}
}
}
MFEM_SYNC_THREAD;
});
}
static void PAMassApply(const int dim,
const int D1D,
const int Q1D,
@@ -1201,30 +1067,47 @@ static void PAMassApply(const int dim,
}
else if (dim == 3)
{
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
static int ini = 0;
if (!ini++) { printf("\033[33mkernel #0x%x\033[m\n",id); }
switch (id)
{
case 0x22: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
case 0x23: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
case 0x24: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
case 0x26: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
case 0x34: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
case 0x35: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
case 0x36: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
case 0x37: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
case 0x45: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
case 0x46: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
case 0x48: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
case 0x56: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
case 0x58: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
case 0x67: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
case 0x78: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
case 0x89: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
case 0x9A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
default: return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
case 0x123: return SmemPAMassApply3D_v1<2,3>(NE,B,Bt,D,X,Y);
case 0x124: return SmemPAMassApply3D_v1<2,4>(NE,B,Bt,D,X,Y);
case 0x134: return SmemPAMassApply3D_v1<3,4>(NE,B,Bt,D,X,Y);
case 0x136: return SmemPAMassApply3D_v1<3,6>(NE,B,Bt,D,X,Y);
case 0x145: return SmemPAMassApply3D_v1<4,5>(NE,B,Bt,D,X,Y);
case 0x148: return SmemPAMassApply3D_v1<4,8>(NE,B,Bt,D,X,Y);
case 0x156: return SmemPAMassApply3D_v1<5,6>(NE,B,Bt,D,X,Y);
case 0x158: return SmemPAMassApply3D_v1<5,8>(NE,B,Bt,D,X,Y);
case 0x167: return SmemPAMassApply3D_v1<6,7>(NE,B,Bt,D,X,Y);
case 0x178: return SmemPAMassApply3D_v1<7,8>(NE,B,Bt,D,X,Y);
case 0x022: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
case 0x023: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
case 0x024: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
case 0x026: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
case 0x034: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
case 0x035: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
case 0x036: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
case 0x037: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
case 0x045: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
case 0x046: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
case 0x048: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
case 0x056: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
case 0x058: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
case 0x067: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
case 0x078: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
case 0x089: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
case 0x09A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
default: break; //return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Unknown kernel.");
MFEM_ABORT("Unknown kernel 0x" << std::hex << id);
}
void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
@@ -1233,6 +1116,35 @@ void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
{
ceedOp->AddMult(x, y);
}
else if (Device::FastKernelsEnabled())
{
const int version = Device::KernelsVersion();
MFEM_VERIFY(version < 4 || version==7, "Unsupported version!");
if (version == 3) // AMD
{
NDK_AMD_PAMassApply(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, x, y);
}
// 4 E-vector
// 5 fused
// 6 MMA
else if (version == 7) // HIP
{
NDK_HIP_PAMassApply(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, x, y);
}
// 0 legacy
// 1 fast
// 2 libP
else
{
NDK_PAMassApply(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, x, y);
}
}
else
{
PAMassApply(dim, dofs1D, quad1D, ne, maps->B, maps->Bt, pa_data, x, y);
+358
View File
@@ -0,0 +1,358 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/mass.hpp"
using namespace std;
namespace mfem
{
void NDK_PAMassAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y);
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal2D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QD[MQ1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dy = 0; dy < D1D; ++dy)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
}
}
}
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
for (int qx = 0; qx < Q1D; ++qx)
{
Y(dx,dy,e) += B(qx, dx) * B(qx, dx) * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
static void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QDZ[NBZ][MQ1][MD1];
double (*QD)[MD1] = (double (*)[MD1])(QDZ + tidz);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B[qy][dy] * B[qy][dy] * D(qx, qy, e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
for (int qx = 0; qx < Q1D; ++qx)
{
// might need absolute values on next line
Y(dx,dy,e) += B[qx][dx] * B[qx][dx] * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal3D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QQD[MQ1][MQ1][MD1];
double QDD[MQ1][MD1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int dz = 0; dz < D1D; ++dz)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
}
}
}
}
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B(qy, dy) * B(qy, dy) * QQD[qx][qy][dz];
}
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B(qx, dx) * B(qx, dx) * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void SmemPAMassAssembleDiagonal3D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
const auto b = Reshape(b_.Read(), Q1D, D1D);
const auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QQD[MQ1][MQ1][MD1];
MFEM_SHARED double QDD[MQ1][MD1][MD1];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
static void PAMassAssembleDiagonal(const int dim, const int D1D,
const int Q1D, const int NE,
const Array<double> &B,
const Vector &D,
Vector &Y)
{
if (dim == 2)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
{
if (DeviceCanUseCeed())
{
ceedOp->GetDiagonal(diag);
}
else if (Device::FastKernelsEnabled())
{
NDK_PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, diag);
}
else
{
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
}
}
} // namespace mfem
+684
View File
@@ -0,0 +1,684 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '0' non-deterministic 3D mass kernel
template<int D1D, int Q1D>
void NDK_SmemPAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto b = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
MFEM_SHARED double sDQ[Q1D*Q1D];
double (*B)[D1D] = (double (*)[D1D]) sDQ;
double (*Bt)[Q1D] = (double (*)[Q1D]) sDQ;
MFEM_SHARED double sm0[Q1D*Q1D*Q1D];
MFEM_SHARED double sm1[Q1D*Q1D*Q1D];
double (*DDQ)[D1D][Q1D] = (double (*)[D1D][Q1D]) sm1;
double (*DQQ)[Q1D][Q1D] = (double (*)[Q1D][Q1D]) sm0;
double (*QQQ)[Q1D][Q1D] = (double (*)[Q1D][Q1D]) sm1;
double (*QQD)[Q1D][D1D] = (double (*)[Q1D][D1D]) sm0;
double (*QDD)[D1D][D1D] = (double (*)[D1D][D1D]) sm1;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
B[qx][dy] = b(qx,dy);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
if (map)
{
const int gid = MAP(dx, dy, dz, e);
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] += X(idx) * B[qx][dx];
}
else
{
u[dz] += X1(dx,dy,dz,e) * B[qx][dx];
}
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
DDQ[dz][dy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] += DDQ[dz][dy][qx] * B[qy][dy];
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
DQQ[dz][qy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[Q1D];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] = 0;
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] += DQQ[dz][qy][qx] * B[qz][dz];
}
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; qz++)
{
QQQ[qz][qy][qx] = u[qz] * D(qx,qy,qz,e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[d][q] = b(q,d);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ[qz][qy][qx] * Bt[dx][qx];
}
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qz][qy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD[qz][qy][dx] * Bt[dy][qy];
}
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
QDD[qz][dy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[D1D];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] = 0;
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += QDD[qz][dy][dx] * Bt[dz][qz];
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
if (map)
{
const int gid = MAP(dx, dy, dz, e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), u[dz]);
}
else
{
Y1(dx,dy,dz,e) += u[dz];
}
}
}
}
MFEM_SYNC_THREAD;
});
}
// Fast '1' non-deterministic 3D mass kernel
// Smem version melded toward registers + BZ-batch
template<int D1D, int Q1D, int NBZ>
void NDK_SmRgPAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(be, (NE+NBZ-1)/NBZ, Q1D, Q1D, NBZ,
{
double u[Q1D];
const int tz = MFEM_THREAD_ID(z);
const int e = be * MFEM_THREAD_SIZE(z) + tz;
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[NBZ][Q1D][Q1D][Q1D];
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
if (tz == 0) { s_B[qx][dy] = B(qx,dy); }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B(qx,dx);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const int gid = map ? MAP(dx,dy,dz,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] += (map ? X(idx) : X1(dx,dy,dz,e)) * Bx;
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] += zyX * s_B[qy][dy]; }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[tz][dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation, Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] += zYX * s_B[qz][dz]; }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
s_q[tz][qz][qy][qx] = u[qz] * D(qx,qy,qz,e);
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[tz][qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * s_B[qz][dz]; }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * s_B[qy][dy]; }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[tz][dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * s_B[qx][dx]; }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double output = u[dx];
if (map)
{
const int gid = MAP(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), output);
}
else
{
Y1(dx,dy,dz,e) += output;
}
}
}
}
MFEM_SYNC_THREAD;
});
}
// Fast '2' non-deterministic 3D mass kernel
// Smem version with registers
template<int D1D, int Q1D>
void NDK_RegsPAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D,D1D);
const auto D = Reshape(d_, Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double r_wk[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
// Load s_B, load X in shared memory
MFEM_FOREACH_THREAD(b,y,Q1D)
{
MFEM_FOREACH_THREAD(a,x,Q1D)
{
if (a<D1D) { s_B[b][a] = B(b,a); }
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = 0.0; }
if (a<D1D && b<D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
s_q[c][b][a] = map ? X(idx) : X1(a,b,c,e);
}
}
}
}
MFEM_SYNC_THREAD;
// Interpolate in X direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(b,x,Q1D)
{
if (b<D1D && c<D1D)
{
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
const double q_cba = s_q[c][b][a];
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] += s_B[i][a]*q_cba; }
}
// reg => s_mem
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { s_q[c][b][i] = r_wk[i]; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = 0.0; }
}
}
MFEM_SYNC_THREAD;
// Interpolate in Y direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
if (c<D1D)
{
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
const double q_cbi = s_q[c][b][i];
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] += s_B[j][b]*q_cbi; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { s_q[c][j][i] = r_wk[j]; }
}
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] = 0.0; }
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
// Interpolate in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cji = s_q[c][j][i];
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] += s_B[k][c]*q_cji; }
}
// Scale by Jacobian and integration weights
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] *= D(i,j,k,e); }
// Project back in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
double q_cji = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { q_cji += s_B[k][c] * r_wk[k]; }
s_q[c][j][i] = q_cji;
}
}
}
MFEM_SYNC_THREAD;
// Project back in Y direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = s_q[c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double q_cbi = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { q_cbi += s_B[j][b] * r_wk[j]; }
s_q[c][b][i] = q_cbi;
}
}
}
MFEM_SYNC_THREAD;
// Project back in X direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = s_q[c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double q_cba = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { q_cba += s_B[i][a] * r_wk[i]; }
s_q[c][b][a] = q_cba;
}
}
}
MFEM_SYNC_THREAD;
// Save back to memory
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cba = s_q[c][b][a];
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(map?Y(idx):Y1(a,b,c,e), q_cba);
}
}
}
MFEM_SYNC_THREAD;
});
}
void NDK_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y)
{
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
const int *map = ER ? ER->GatherMap().Read() : nullptr;
const double *b = maps->B.Read();
const double *d = D.Read();
const double *x = X.Read();
double *y = Y.ReadWrite();
assert(dim == 3);
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
//printf("\033[32mkernel #0x%x\033[m\n",id); fflush(0);
switch (id) // orders 1~6
{
// Fast '0': Legacy non-deterministic 3D mass kernel
case 0x023: return NDK_SmemPAMassApply3D<2,3>(ND,NE,map,b,d,x,y);
case 0x024: return NDK_SmemPAMassApply3D<2,4>(ND,NE,map,b,d,x,y);
case 0x034: return NDK_SmemPAMassApply3D<3,4>(ND,NE,map,b,d,x,y);
case 0x036: return NDK_SmemPAMassApply3D<3,6>(ND,NE,map,b,d,x,y);
case 0x045: return NDK_SmemPAMassApply3D<4,5>(ND,NE,map,b,d,x,y);
case 0x046: return NDK_SmemPAMassApply3D<4,6>(ND,NE,map,b,d,x,y);
case 0x048: return NDK_SmemPAMassApply3D<4,8>(ND,NE,map,b,d,x,y);
case 0x056: return NDK_SmemPAMassApply3D<5,6>(ND,NE,map,b,d,x,y);
case 0x058: return NDK_SmemPAMassApply3D<5,8>(ND,NE,map,b,d,x,y);
case 0x067: return NDK_SmemPAMassApply3D<6,7>(ND,NE,map,b,d,x,y);
case 0x078: return NDK_SmemPAMassApply3D<7,8>(ND,NE,map,b,d,x,y);
// Fast '1': Legacy & half smem non-deterministic 3D mass kernel + Z-batch
case 0x123: return NDK_SmRgPAMassApply3D<2,3,32>(ND,NE,map,b,d,x,y);//1
case 0x124: return NDK_SmRgPAMassApply3D<2,4,16>(ND,NE,map,b,d,x,y);
case 0x134: return NDK_SmRgPAMassApply3D<3,4,16>(ND,NE,map,b,d,x,y);//2
case 0x136: return NDK_SmRgPAMassApply3D<3,6,8>(ND,NE,map,b,d,x,y);
case 0x145: return NDK_SmRgPAMassApply3D<4,5,4>(ND,NE,map,b,d,x,y);//3
case 0x146: return NDK_SmRgPAMassApply3D<4,6,4>(ND,NE,map,b,d,x,y);
case 0x148: return NDK_SmRgPAMassApply3D<4,8,4>(ND,NE,map,b,d,x,y);
case 0x156: return NDK_SmRgPAMassApply3D<5,6,4>(ND,NE,map,b,d,x,y);//4
case 0x158: return NDK_SmRgPAMassApply3D<5,8,1>(ND,NE,map,b,d,x,y);
case 0x167: return NDK_SmRgPAMassApply3D<6,7,1>(ND,NE,map,b,d,x,y);//5
case 0x178: return NDK_SmRgPAMassApply3D<7,8,1>(ND,NE,map,b,d,x,y);//6
// Fast '2': libP non-deterministic 3D mass kernel
case 0x223: return NDK_RegsPAMassApply3D<2,3>(ND,NE,map,b,d,x,y);
case 0x224: return NDK_RegsPAMassApply3D<2,4>(ND,NE,map,b,d,x,y);
case 0x234: return NDK_RegsPAMassApply3D<3,4>(ND,NE,map,b,d,x,y);
case 0x236: return NDK_RegsPAMassApply3D<3,6>(ND,NE,map,b,d,x,y);
case 0x245: return NDK_RegsPAMassApply3D<4,5>(ND,NE,map,b,d,x,y);
case 0x246: return NDK_RegsPAMassApply3D<4,6>(ND,NE,map,b,d,x,y);
case 0x248: return NDK_RegsPAMassApply3D<4,8>(ND,NE,map,b,d,x,y);
case 0x256: return NDK_RegsPAMassApply3D<5,6>(ND,NE,map,b,d,x,y);
case 0x258: return NDK_RegsPAMassApply3D<5,8>(ND,NE,map,b,d,x,y);
case 0x267: return NDK_RegsPAMassApply3D<6,7>(ND,NE,map,b,d,x,y);
case 0x278: return NDK_RegsPAMassApply3D<7,8>(ND,NE,map,b,d,x,y);
// Fast '3': libP + AMD specific non-deterministic 3D mass kernel
// in bilininteg_mass_pa_fast_amd.cpp
default: break;
}
MFEM_ABORT("Unknown kernel 0x" << std::hex << id);
}
} // namespace mfem
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '3' non-deterministic 3D mass kernel
template<int D1D, int Q1D>
void NDK_AMD_PAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D,D1D);
const auto D = Reshape(d_, Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double r_wk[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
// Load s_B, load X in shared memory
MFEM_FOREACH_THREAD(b,y,Q1D)
{
MFEM_FOREACH_THREAD(a,x,Q1D)
{
if (a<D1D) { s_B[b][a] = B(b,a); }
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = 0.0; }
if (a<D1D && b<D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
s_q[c][b][a] = map ? X(idx) : X1(a,b,c,e);
}
}
}
}
MFEM_SYNC_THREAD;
// Interpolate in X direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(b,x,Q1D)
{
if (b<D1D && c<D1D)
{
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
const double q_cba = s_q[c][b][a];
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] += s_B[i][a]*q_cba; }
}
// reg => s_mem
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { s_q[c][b][i] = r_wk[i]; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = 0.0; }
}
}
MFEM_SYNC_THREAD;
// Interpolate in Y direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
if (c<D1D)
{
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
const double q_cbi = s_q[c][b][i];
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] += s_B[j][b]*q_cbi; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { s_q[c][j][i] = r_wk[j]; }
}
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] = 0.0; }
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
// Interpolate in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cji = s_q[c][j][i];
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] += s_B[k][c]*q_cji; }
}
// Scale by Jacobian and integration weights
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] *= D(i,j,k,e); }
// Project back in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
double q_cji = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { q_cji += s_B[k][c] * r_wk[k]; }
s_q[c][j][i] = q_cji;
}
}
}
MFEM_SYNC_THREAD;
// Project back in Y direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = s_q[c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double q_cbi = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { q_cbi += s_B[j][b] * r_wk[j]; }
s_q[c][b][i] = q_cbi;
}
}
}
MFEM_SYNC_THREAD;
// Project back in X direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = s_q[c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double q_cba = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { q_cba += s_B[i][a] * r_wk[i]; }
s_q[c][b][a] = q_cba;
}
}
}
MFEM_SYNC_THREAD;
// Save back to memory
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cba = s_q[c][b][a];
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(map?Y(idx):Y1(a,b,c,e), q_cba);
}
}
}
MFEM_SYNC_THREAD;
});
}
void NDK_AMD_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y)
{
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
const int *map = ER ? ER->GatherMap().Read() : nullptr;
const double *b = maps->B.Read();
const double *d = D.Read();
const double *x = X.Read();
double *y = Y.ReadWrite();
assert(dim == 3);
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
//printf("\033[32mkernel #0x%x\033[m\n",id); fflush(0);
switch (id) // orders 1~6
{
// Fast '3': libP + AMD specific non-deterministic 3D mass kernel
case 0x323: return NDK_AMD_PAMassApply3D<2,3>(ND,NE,map,b,d,x,y);
case 0x324: return NDK_AMD_PAMassApply3D<2,4>(ND,NE,map,b,d,x,y);
case 0x334: return NDK_AMD_PAMassApply3D<3,4>(ND,NE,map,b,d,x,y);
case 0x336: return NDK_AMD_PAMassApply3D<3,6>(ND,NE,map,b,d,x,y);
case 0x345: return NDK_AMD_PAMassApply3D<4,5>(ND,NE,map,b,d,x,y);
case 0x346: return NDK_AMD_PAMassApply3D<4,6>(ND,NE,map,b,d,x,y);
case 0x348: return NDK_AMD_PAMassApply3D<4,8>(ND,NE,map,b,d,x,y);
case 0x356: return NDK_AMD_PAMassApply3D<5,6>(ND,NE,map,b,d,x,y);
case 0x358: return NDK_AMD_PAMassApply3D<5,8>(ND,NE,map,b,d,x,y);
case 0x367: return NDK_AMD_PAMassApply3D<6,7>(ND,NE,map,b,d,x,y);
case 0x378: return NDK_AMD_PAMassApply3D<7,8>(ND,NE,map,b,d,x,y);
default: break;
}
MFEM_ABORT("Unknown kernel 0x" << std::hex << id);
}
} // namespace mfem
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '0' non-deterministic 3D mass diag kernel
template<int D1D, int Q1D>
static void NDK_SmemPAMassDiag3D(const int ndofs,
const int NE,
const int *map_,
const double *b_,
const double *d_,
double *y_)
{
const auto MAP = Reshape(map_, D1D,D1D,D1D, NE);
const auto b = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_, ndofs);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
MFEM_SHARED double B[Q1D][D1D];
MFEM_SHARED double QQD[Q1D][Q1D][D1D];
MFEM_SHARED double QDD[Q1D][D1D][D1D];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
}
const int gid = MAP(dx, dy, dz, e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), t);
}
}
}
});
}
// Fast non-deterministic 3D mass diag kernel
// Less smem version with registers
template<int D1D, int Q1D>
static void NDK_RegsPAMassDiag3D(const int ndofs,
const int NE,
const int *map_,
const double *b_,
const double *d_,
double *y_)
{
const auto MAP = Reshape(map_, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_, ndofs);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double r_wk[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
MFEM_FOREACH_THREAD(d,y,Q1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
if (d<D1D) { s_B[q][d] = B(q,d); }
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] = D(i,j,k,e); }
for (int c=0; c<D1D; ++c)
{
double q_cji = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k)
{
const double Bkc = s_B[k][c];
q_cji += Bkc * Bkc * r_wk[k];
}
s_q[c][j][i] = q_cji;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
for (int j=0; j<Q1D; ++j) { r_wk[j] = s_q[c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double q_cbi = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j)
{
const double Bjb = s_B[j][b];
q_cbi += Bjb * Bjb * r_wk[j];
}
s_q[c][b][i] = q_cbi;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
for (int i=0; i<Q1D; ++i) { r_wk[i] = s_q[c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double q_cba = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i)
{
const double Bia = s_B[i][a];
q_cba += Bia * Bia * r_wk[i];
}
s_q[c][b][a] = q_cba;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cba = s_q[c][b][a];
const int gid = MAP(a,b,c,e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), q_cba);
}
}
}
MFEM_SYNC_THREAD;
});
}
void NDK_PAMassAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y)
{
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const int *map = ER->GatherMap().Read();
const double *b = maps->B.Read();
const double *d = D.Read();
double *y = Y.ReadWrite();
assert(dim == 3);
const int ver = Device::KernelsVersion();
const int vid = (ver << 8) | (D1D << 4) | Q1D;
// Fast '0' non-deterministic 3D mass diag kernel
switch (vid) // orders 1~6
{
case 0x023: return NDK_SmemPAMassDiag3D<2,3>(ND,NE,map,b,d,y);
case 0x024: return NDK_SmemPAMassDiag3D<2,4>(ND,NE,map,b,d,y);
case 0x034: return NDK_SmemPAMassDiag3D<3,4>(ND,NE,map,b,d,y);
case 0x045: return NDK_SmemPAMassDiag3D<4,5>(ND,NE,map,b,d,y);
case 0x046: return NDK_SmemPAMassDiag3D<4,6>(ND,NE,map,b,d,y);
case 0x056: return NDK_SmemPAMassDiag3D<5,6>(ND,NE,map,b,d,y);
case 0x058: return NDK_SmemPAMassDiag3D<5,8>(ND,NE,map,b,d,y);
case 0x067: return NDK_SmemPAMassDiag3D<6,7>(ND,NE,map,b,d,y);
case 0x078: return NDK_SmemPAMassDiag3D<7,8>(ND,NE,map,b,d,y);
default: break;
}
// all other versions should fold back through these kernels
switch ((D1D << 4) | Q1D)
{
case 0x23: return NDK_RegsPAMassDiag3D<2,3>(ND,NE,map,b,d,y);
case 0x24: return NDK_RegsPAMassDiag3D<2,4>(ND,NE,map,b,d,y);
case 0x34: return NDK_RegsPAMassDiag3D<3,4>(ND,NE,map,b,d,y);
case 0x45: return NDK_RegsPAMassDiag3D<4,5>(ND,NE,map,b,d,y);
case 0x46: return NDK_RegsPAMassDiag3D<4,6>(ND,NE,map,b,d,y);
case 0x56: return NDK_RegsPAMassDiag3D<5,6>(ND,NE,map,b,d,y);
case 0x58: return NDK_RegsPAMassDiag3D<5,8>(ND,NE,map,b,d,y);
case 0x67: return NDK_RegsPAMassDiag3D<6,7>(ND,NE,map,b,d,y);
case 0x78: return NDK_RegsPAMassDiag3D<7,8>(ND,NE,map,b,d,y);
default: break;
}
MFEM_ABORT("Unknown kernel 0x" << std::hex << vid);
}
} // namespace mfem
+224
View File
@@ -0,0 +1,224 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '7' HIP
template<int D1D, int Q1D, int NBZ=1, int NBK=1> MFEM_GLOBAL static
//MFEM_LAUNCH_BOUNDS(Q1D*Q1D*NBZ,NBK)
void HIP_PAMassApply(const int NE,
const int* MAP,
const double* B,
const double* D,
const double* X,
double* Y)
{
double u[Q1D];
const int tz = MFEM_THREAD_ID(z);
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[NBZ][Q1D][Q1D][Q1D];
for (int be = MFEM_BLOCK_ID(x); be < (NE+NBZ-1)/NBZ; be += MFEM_GRID_DIM(x))
{
const int e = be * NBZ + tz;
if (e>=NE) { return; }
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
if (tz == 0) { s_B[qx][dy] = B[qx+Q1D*dy]; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B[qx+Q1D*dx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const int gid = MAP[e*D1D*D1D*D1D+dz*D1D*D1D+dy*D1D+dx];
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] = fma(X[idx], Bx, u[dz]);
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = fma(zyX,s_B[qy][dy],u[qy]); }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[tz][dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation, Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = fma(zYX,s_B[qz][dz],u[qz]); }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const int idx = e*Q1D*Q1D*Q1D + qx + qy*Q1D + qz*Q1D*Q1D;
s_q[tz][qz][qy][qx] = u[qz] * D[idx];
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[tz][qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = fma(ZYX,s_B[qz][dz],u[dz]); }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = fma(zYX,s_B[qy][dy],u[dy]); }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[tz][dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = fma(zyX,s_B[qx][dx],u[dx]); }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double output = u[dx];
const int gid = MAP[e*D1D*D1D*D1D+dz*D1D*D1D+dy*D1D+dx];
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y[idx], output);
}
}
}
MFEM_SYNC_THREAD;
}
}
void NDK_HIP_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &d,
const Vector &x,
Vector &y)
{
assert(dim == 3);
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction *ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const auto M = ER->GatherMap().Read();
const double *B = maps->B.Read();
const double *D = d.Read();
const double *X = x.Read();
double *Y = y.ReadWrite();
void (*Ker)(const int NE,
const int *M,
const double *B,
const double *D,
const double *X,
double *Y) = nullptr;
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
switch (id) // orders 1~8
{
case 0x723: Ker=HIP_PAMassApply<2,3>; break; // 1
case 0x734: Ker=HIP_PAMassApply<3,4>; break; // 2
case 0x745: Ker=HIP_PAMassApply<4,5>; break; // 3
case 0x756: Ker=HIP_PAMassApply<5,6>; break; // 4
case 0x767: Ker=HIP_PAMassApply<6,7>; break; // 5
case 0x778: Ker=HIP_PAMassApply<7,8>; break; // 6
case 0x789: Ker=HIP_PAMassApply<8,9>; break; // 7
case 0x79A: Ker=HIP_PAMassApply<9,10>; break; // 8
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
MFEM_LAUNCH_KERNEL(Ker,NE,dim3(Q1D,Q1D,1),0,NE,M,B,D,X,Y);
}
} // namespace mfem
+1 -1
View File
@@ -34,7 +34,7 @@ void VectorMassIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q, action_type);
return;
}
dim = mesh->Dimension();
+3 -1
View File
@@ -48,7 +48,8 @@ struct MassOperatorInfo : public OperatorInfo
PAMassIntegrator::PAMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
mfem::Coefficient *Q)
mfem::Coefficient *Q,
mfem::ActionType &action_type)
: PAIntegrator()
{
#ifdef MFEM_USE_CEED
@@ -57,6 +58,7 @@ PAMassIntegrator::PAMassIntegrator(const mfem::FiniteElementSpace &fes,
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
action_type = mfem::ActionType::L2L;
}
MFMassIntegrator::MFMassIntegrator(const mfem::FiniteElementSpace &fes,
+2 -1
View File
@@ -27,7 +27,8 @@ class PAMassIntegrator : public PAIntegrator
public:
PAMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
mfem::Coefficient *Q);
mfem::Coefficient *Q,
mfem::ActionType &action_type);
};
/// Represent a MassIntegrator with AssemblyLevel::None using libCEED.
+2
View File
@@ -65,6 +65,8 @@ void RemoveBasisAndRestriction(const mfem::FiniteElementSpace *fes)
itr++;
}
}
#else
MFEM_CONTRACT_VAR(fes);
#endif
}
+98 -7
View File
@@ -21,6 +21,33 @@ namespace mfem
using namespace std;
// Given an ElementTransformation and IntegrationPoint in a refined mesh,
// return the ElementTransformation of the parent coarse element, and set
// coarse_ip to the location of the original ip within the coarse element.
ElementTransformation *RefinedToCoarse(
Mesh &coarse_mesh, const ElementTransformation &T,
const IntegrationPoint &ip, IntegrationPoint &coarse_ip)
{
Mesh &fine_mesh = *T.mesh;
// Get the element transformation of the coarse element containing the
// fine element.
int fine_element = T.ElementNo;
const CoarseFineTransformations &cf = fine_mesh.GetRefinementTransforms();
int coarse_element = cf.embeddings[fine_element].parent;
ElementTransformation *coarse_T = coarse_mesh.GetElementTransformation(
coarse_element);
// Transform the integration point from fine element coordinates to coarse
// element coordinates.
Geometry::Type geom = T.GetGeometryType();
IntegrationPointTransformation fine_to_coarse;
IsoparametricTransformation &emb_tr = fine_to_coarse.Transf;
emb_tr.SetIdentityTransformation(geom);
emb_tr.SetPointMat(cf.point_matrices[geom](cf.embeddings[fine_element].matrix));
fine_to_coarse.Transform(ip, coarse_ip);
coarse_T->SetIntPoint(&coarse_ip);
return coarse_T;
}
double PWConstCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
@@ -95,7 +122,17 @@ double FunctionCoefficient::Eval(ElementTransformation & T,
double GridFunctionCoefficient::Eval (ElementTransformation &T,
const IntegrationPoint &ip)
{
return GridF -> GetValue (T, ip, Component);
Mesh *gf_mesh = GridF->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
return GridF->GetValue(T, ip, Component);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
return GridF->GetValue(*coarse_T, coarse_ip, Component);
}
}
void TransformedCoefficient::SetTime(double t)
@@ -305,13 +342,30 @@ void VectorGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
void VectorGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
GridFunc->GetVectorValue(T, ip, V);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
GridFunc->GetVectorValue(T, ip, V);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
GridFunc->GetVectorValue(*coarse_T, coarse_ip, V);
}
}
void VectorGridFunctionCoefficient::Eval(
DenseMatrix &M, ElementTransformation &T, const IntegrationRule &ir)
{
GridFunc->GetVectorValues(T, ir, M);
if (T.mesh == GridFunc->FESpace()->GetMesh())
{
GridFunc->GetVectorValues(T, ir, M);
}
else
{
VectorCoefficient::Eval(M, T, ir);
}
}
GradientGridFunctionCoefficient::GradientGridFunctionCoefficient (
@@ -331,13 +385,30 @@ void GradientGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
void GradientGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
GridFunc->GetGradient(T, V);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
GridFunc->GetGradient(T, V);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
GridFunc->GetGradient(*coarse_T, V);
}
}
void GradientGridFunctionCoefficient::Eval(
DenseMatrix &M, ElementTransformation &T, const IntegrationRule &ir)
{
GridFunc->GetGradients(T, ir, M);
if (T.mesh == GridFunc->FESpace()->GetMesh())
{
GridFunc->GetGradients(T, ir, M);
}
else
{
VectorCoefficient::Eval(M, T, ir);
}
}
CurlGridFunctionCoefficient::CurlGridFunctionCoefficient(
@@ -363,7 +434,17 @@ void CurlGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
void CurlGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
GridFunc->GetCurl(T, V);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
GridFunc->GetCurl(T, V);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
GridFunc->GetCurl(*coarse_T, V);
}
}
DivergenceGridFunctionCoefficient::DivergenceGridFunctionCoefficient (
@@ -375,7 +456,17 @@ DivergenceGridFunctionCoefficient::DivergenceGridFunctionCoefficient (
double DivergenceGridFunctionCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
return GridFunc->GetDivergence(T);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
return GridFunc->GetDivergence(T);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
return GridFunc->GetDivergence(*coarse_T);
}
}
void VectorDeltaCoefficient::SetTime(double t)
+1
View File
@@ -574,6 +574,7 @@ public:
/// Evaluate the coefficient.
virtual void Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip);
using VectorCoefficient::Eval;
};
/// A general vector function coefficient
+1 -1
View File
@@ -330,7 +330,7 @@ ConduitDataCollection::BlueprintMeshToMesh(const Node &n_mesh,
}
else
{
Node &(n_bndry_conn_conv) =
Node &n_bndry_conn_conv =
n_conv["topologies"][bndry_topo_name]["elements/connectivity"];
n_bndry_conn.to_int_array(n_bndry_conn_conv);
bndry_indices = (n_bndry_conn_conv).value();
+1
View File
@@ -243,6 +243,7 @@ public:
void TransformDual(double *v) const;
void InvTransformDual(double *v) const;
using DofTransformation::InvTransformDual;
};
/// DoF transformation implementation for the Nedelec basis on tetrahedra
+2 -1
View File
@@ -21,7 +21,8 @@ ElementTransformation::ElementTransformation()
EvalState(0),
geom(Geometry::INVALID),
Attribute(-1),
ElementNo(-1)
ElementNo(-1),
mesh(nullptr)
{ }
double ElementTransformation::EvalWeight()
+6
View File
@@ -75,6 +75,12 @@ public:
int Attribute, ElementNo, ElementType;
/// The Mesh object containing the element.
/** If the element transformation belongs to a mesh, this will point to the
containing Mesh object. ElementNo will be the number of the element in
this Mesh. This will be NULL if the element does not belong to a mesh. */
class Mesh *mesh;
ElementTransformation();
/** @brief Force the reevaluation of the Jacobian in the next call. */
+6 -5
View File
@@ -749,11 +749,12 @@ public:
DenseMatrix &div) const;
/** @brief Get an Array<int> that maps lexicographically ordered indices to
the indices of the respective nodes/dofs/basis functions. Lexicographic
ordering of nodes is defined in terms of reference-space coordinates
(x,y,z). Lexicographically ordered nodes are listed first in order of
increasing x-coordinate, and then in order of increasing y-coordinate,
and finally in order of increasing z-coordinate.
the indices of the respective nodes/dofs/basis functions.
Lexicographic ordering of nodes is defined in terms of reference-space
coordinates (x,y,z). Lexicographically ordered nodes are listed first in
order of increasing x-coordinate, and then in order of increasing
y-coordinate, and finally in order of increasing z-coordinate.
For example, the six nodes of a quadratic triangle are lexicographically
ordered as follows:
+1 -2
View File
@@ -112,7 +112,7 @@ FmsFieldToGridFunction(FmsMesh fms_mesh, FmsField f, Mesh *mesh,
// NOTE: transplanted from the FmsMeshToMesh function
// We should do this work once and save it.
//--------------------------------------------------
FmsInt dim, n_vert, n_elem, space_dim;
FmsInt dim, n_elem, space_dim;
// Find the first component that has coordinates - that will be the new mfem
// mesh.
@@ -144,7 +144,6 @@ FmsFieldToGridFunction(FmsMesh fms_mesh, FmsField f, Mesh *mesh,
n_ents[et] += num_ents;
}
}
n_vert = n_ents[FMS_VERTEX];
//--------------------------------------------------
// Interrogate the field.
+441
View File
@@ -48,6 +48,26 @@ MFEM_HOST_DEVICE inline void LoadB(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Load B1d matrice into shared memory
MFEM_HOST_DEVICE inline void LoadB(const int D1D, const int Q1D,
const ConstDeviceMatrix &b,
const DeviceMatrix &B)
{
const int tidz = MFEM_THREAD_ID(z);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B(q,d) = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
}
/// Load Bt1d matrices into shared memory
template<int MD1, int MQ1>
MFEM_HOST_DEVICE inline void LoadBt(const int D1D, const int Q1D,
@@ -120,6 +140,29 @@ MFEM_HOST_DEVICE inline void LoadBGt(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Load Bt1d & Gt1d matrices into shared memory w/o MAX
MFEM_HOST_DEVICE inline void LoadBGt(const int D1D, const int Q1D,
const ConstDeviceMatrix &b,
const ConstDeviceMatrix &g,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt)
{
const int tidz = MFEM_THREAD_ID(z);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt(d,q) = b(q,d);
Gt(d,q) = g(q,d);
}
}
}
MFEM_SYNC_THREAD;
}
/// Load 2D input scalar into shared memory
template<int MD1, int NBZ>
MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
@@ -628,6 +671,141 @@ MFEM_HOST_DEVICE inline void GradXt(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Atomic 2D Transposed Evaluation, 1/2
MFEM_HOST_DEVICE inline void Atomic2DEvalYt(const int D1D, const int Q1D,
const DeviceMatrix &B,
const DeviceMatrix &QQ,
const DeviceMatrix &QD)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0;
for (int qx = 0; qx < Q1D; ++qx) { u += QQ(qy,qx) * B(qx,dx); }
QD(qy,dx) = u;
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 2D Transposed Evaluation, 2/2
MFEM_HOST_DEVICE inline void Atomic2DEvalXt(const int D1D, const int Q1D,
const DeviceMatrix &B,
const DeviceMatrix &Q,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0;
for (int qy = 0; qy < Q1D; ++qy) { u += Q(qy,dx) * B(qy,dy); }
const int gid = I(dx,dy,e);
const int idx = gid >= 0 ? gid : -1 - gid;
if (byVDIM) { AtomicAdd(Y(c,idx), u); }
else { AtomicAdd(Y(idx,c), u); }
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void Atomic2DEvalTranspose(const int D1D,
const int Q1D,
const DeviceMatrix &B,
const DeviceMatrix &QQ,
const DeviceMatrix &QD,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::Atomic2DEvalYt(D1D,Q1D,B,QQ,QD);
kernels::internal::Atomic2DEvalXt(D1D,Q1D,B,QD,I,Y,c,e,byVDIM);
}
/// Atomic 2D Transposed Gradient, 1/2
MFEM_HOST_DEVICE inline void AtomicGradYt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceMatrix &QQ0,
const DeviceMatrix &QQ1,
const DeviceMatrix &DQ0,
const DeviceMatrix &DQ1)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
u += Gt(dx,qx) * QQ0(qy,qx);
v += Bt(dx,qx) * QQ1(qy,qx);
}
DQ0(dx,qy) = u;
DQ1(dx,qy) = v;
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 2D Transposed Gradient, 2/2
MFEM_HOST_DEVICE inline void AtomicGradXt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceMatrix &DQ0,
const DeviceMatrix &DQ1,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
u += DQ0(dx,qy) * Bt(dy,qy);
v += DQ1(dx,qy) * Gt(dy,qy);
}
const double sum = u + v;
const int gid = I(dx,dy,e);
const int idx = gid >= 0 ? gid : -1-gid;
if (byVDIM) { AtomicAdd(Y(c,idx), sum); }
else { AtomicAdd(Y(idx,c), sum); }
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void Atomic2DGradTranspose(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceMatrix &QQ0,
const DeviceMatrix &QQ1,
const DeviceMatrix &DQ0,
const DeviceMatrix &DQ1,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::AtomicGradYt(D1D,Q1D,Bt,Gt,QQ0,QQ1,DQ0,DQ1);
kernels::internal::AtomicGradXt(D1D,Q1D,Bt,Gt,DQ0,DQ1,I,Y,c,e,byVDIM);
}
/// Load 3D scalar input vector into shared memory
MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
const DeviceTensor<4, const double> &x,
@@ -1543,6 +1721,269 @@ MFEM_HOST_DEVICE inline void GradXt(const int D1D, const int Q1D,
}
}
/// Atomic 3D Transposed Evaluation, 1/3
MFEM_HOST_DEVICE inline void Atomic3DEvalZt(const int D1D, const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = Q(qz,qy,qx);
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * B(qz,dz); }
}
for (int dz = 0; dz < D1D; ++dz) { Q(dz,qy,qx) = u[dz]; }
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Evaluation, 2/3
MFEM_HOST_DEVICE inline void Atomic3DEvalYt(const int D1D, const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q)
{
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = Q(dz,qy,qx);
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * B(qy,dy); }
}
for (int dy = 0; dy < D1D; ++dy) { Q(dz,dy,qx) = u[dy]; }
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Evaluation, 3/3
MFEM_HOST_DEVICE inline void Atomic3DEvalXt(const int D1D, const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = Q(dz,dy,qx);
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * B(qx,dx); }
}
for (int dx = 0; dx < D1D; ++dx)
{
const double val = u[dx];
const int gid = I(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
if (byVDIM) { AtomicAdd(Y(c,idx), val); }
else { AtomicAdd(Y(idx,c), val); }
}
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void Atomic3DEvalTranspose(const int D1D,
const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::Atomic3DEvalZt(D1D,Q1D,u,B,Q);
kernels::internal::Atomic3DEvalYt(D1D,Q1D,u,B,Q);
kernels::internal::Atomic3DEvalXt(D1D,Q1D,u,B,Q,I,Y,c,e,byVDIM);
}
// Half of B and G are stored in shared to get B, Bt, G and Gt.
// Indices computation for SmemPADiffusionApply3D.
static MFEM_HOST_DEVICE inline int qi(const int q, const int d, const int Q)
{
return (q<=d) ? q : Q-1-q;
}
static MFEM_HOST_DEVICE inline int dj(const int q, const int d, const int D)
{
return (q<=d) ? d : D-1-d;
}
static MFEM_HOST_DEVICE inline int qk(const int q, const int d, const int Q)
{
return (q<=d) ? Q-1-q : q;
}
static MFEM_HOST_DEVICE inline int dl(const int q, const int d, const int D)
{
return (q<=d) ? D-1-d : d;
}
static MFEM_HOST_DEVICE inline double sign(const int q, const int d)
{
return (q<=d) ? -1.0 : 1.0;
}
/// Atomic 3D Transposed Gradient, 1/3
MFEM_HOST_DEVICE inline void AtomicGradZt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QQQ0,
const DeviceCube &QQQ1,
const DeviceCube &QQQ2,
const DeviceCube &QQD0,
const DeviceCube &QQD1,
const DeviceCube &QQD2)
{
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
u += QQQ0(qz,qy,qx) * Gt(l,k) * s;
v += QQQ1(qz,qy,qx) * Bt(j,i);
w += QQQ2(qz,qy,qx) * Bt(j,i);
}
QQD0(qz,qy,dx) = u;
QQD1(qz,qy,dx) = v;
QQD2(qz,qy,dx) = w;
}
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Gradient, 2/3
MFEM_HOST_DEVICE inline void AtomicGradYt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QQD0,
const DeviceCube &QQD1,
const DeviceCube &QQD2,
const DeviceCube &QDD0,
const DeviceCube &QDD1,
const DeviceCube &QDD2)
{
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
u += QQD0(qz,qy,dx) * Bt(j,i);
v += QQD1(qz,qy,dx) * Gt(l,k) * s;
w += QQD2(qz,qy,dx) * Bt(j,i);
}
QDD0(qz,dy,dx) = u;
QDD1(qz,dy,dx) = v;
QDD2(qz,dy,dx) = w;
}
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Gradient, 3/3
MFEM_HOST_DEVICE inline void AtomicGradXt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QDD0,
const DeviceCube &QDD1,
const DeviceCube &QDD2,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
const int i = qi(qz,dz,Q1D);
const int j = dj(qz,dz,D1D);
const int k = qk(qz,dz,Q1D);
const int l = dl(qz,dz,D1D);
const double s = sign(qz,dz);
u += QDD0(qz,dy,dx) * Bt(j,i);
v += QDD1(qz,dy,dx) * Bt(j,i);
w += QDD2(qz,dy,dx) * Gt(l,k) * s;
}
const double sum = u + v + w;
const int gid = I(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1-gid;
if (byVDIM) { AtomicAdd(Y(c,idx), sum); }
else { AtomicAdd(Y(idx,c), sum); }
}
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline void Atomic3DGrad(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QQ0,
const DeviceCube &QQ1,
const DeviceCube &QQ2,
const DeviceCube &QD0,
const DeviceCube &QD1,
const DeviceCube &QD2,
const DeviceCube &DD0,
const DeviceCube &DD1,
const DeviceCube &DD2,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::AtomicGradZt(D1D,Q1D,Bt,Gt,QQ0,QQ1,QQ2,QD0,QD1,QD2);
kernels::internal::AtomicGradYt(D1D,Q1D,Bt,Gt,QD0,QD1,QD2,DD0,DD1,DD2);
kernels::internal::AtomicGradXt(D1D,Q1D,Bt,Gt,DD0,DD1,DD2,I,Y,c,e,byVDIM);
}
} // namespace kernels::internal
} // namespace kernels
+48 -9
View File
@@ -23,6 +23,7 @@ LinearForm::LinearForm(FiniteElementSpace *f, LinearForm *lf)
UseDevice(true);
fes = f;
ext = nullptr;
extern_lfs = 1;
// Copy the pointers to the integrators
@@ -69,14 +70,14 @@ void LinearForm::AddDomainIntegrator(LinearFormIntegrator *lfi,
void LinearForm::AddBoundaryIntegrator (LinearFormIntegrator * lfi)
{
boundary_integs.Append (lfi);
boundary_integs.Append(lfi);
boundary_integs_marker.Append(NULL); // NULL -> all attributes are active
}
void LinearForm::AddBoundaryIntegrator (LinearFormIntegrator * lfi,
Array<int> &bdr_attr_marker)
{
boundary_integs.Append (lfi);
boundary_integs.Append(lfi);
boundary_integs_marker.Append(&bdr_attr_marker);
}
@@ -99,8 +100,35 @@ void LinearForm::AddInteriorFaceIntegrator(LinearFormIntegrator *lfi)
interior_face_integs.Append(lfi);
}
void LinearForm::SetAssemblyLevel(LinearAssemblyLevel assembly_level)
{
if (ext)
{
MFEM_ABORT("the assembly level has already been set!");
}
assembly = assembly_level;
switch (assembly)
{
case LinearAssemblyLevel::LEGACY:
break;
case LinearAssemblyLevel::FULL:
ext = new FullLinearFormExtension(this);
break;
default:
mfem_error("Unknown assembly level");
}
}
void LinearForm::Assemble()
{
Vector::operator=(0.0);
// The above operation is executed on device because of UseDevice().
// The first use of AddElementVector() below will move it back to host
// because both 'vdofs' and 'elemvect' are on host.
if (ext) { return ext->Assemble(); }
Array<int> vdofs;
ElementTransformation *eltrans;
DofTransformation *doftrans;
@@ -108,12 +136,6 @@ void LinearForm::Assemble()
int i;
Vector::operator=(0.0);
// The above operation is executed on device because of UseDevice().
// The first use of AddElementVector() below will move it back to host
// because both 'vdofs' and 'elemvect' are on host.
if (domain_integs.Size())
{
for (int k = 0; k < domain_integs.Size(); k++)
@@ -143,7 +165,7 @@ void LinearForm::Assemble()
{
doftrans->TransformDual(elemvect);
}
AddElementVector (vdofs, elemvect);
AddElementVector(vdofs, elemvect);
}
}
}
@@ -274,6 +296,18 @@ void LinearForm::Assemble()
}
}
void LinearForm::Update()
{
SetSize(fes->GetVSize()); ResetDeltaLocations();
if (ext) { ext->Update(); }
}
void LinearForm::Update(FiniteElementSpace *f)
{
fes = f;
Update();
}
void LinearForm::Update(FiniteElementSpace *f, Vector &v, int v_offset)
{
MFEM_ASSERT(v.Size() >= v_offset + f->GetVSize(), "");
@@ -281,6 +315,7 @@ void LinearForm::Update(FiniteElementSpace *f, Vector &v, int v_offset)
v.UseDevice(true);
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
ResetDeltaLocations();
if (ext) { ext->Update(); }
}
void LinearForm::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
@@ -292,6 +327,8 @@ void LinearForm::AssembleDelta()
{
if (domain_delta_integs.Size() == 0) { return; }
if (ext) { return ext->AssembleDelta(); }
if (!HaveDeltaLocations())
{
int sdim = fes->GetMesh()->SpaceDimension();
@@ -356,6 +393,8 @@ LinearForm::~LinearForm()
for (k=0; k < interior_face_integs.Size(); k++)
{ delete interior_face_integs[k]; }
}
delete ext;
}
}
+33 -6
View File
@@ -14,18 +14,39 @@
#include "../config/config.hpp"
#include "lininteg.hpp"
#include "linearform_ext.hpp"
#include "gridfunc.hpp"
namespace mfem
{
/** @brief Enumeration defining the assembly level for linear form classes
* derived from Vector. */
enum class LinearAssemblyLevel
{
/// Legacy assembled form, i.e. a global vector in MFEM format.
/// This assembly level is ALWAYS performed on the host.
LEGACY = 0,
/// Fully assembled form, i.e. a global vector in MFEM format.
/// This assembly is compatible with device execution.
FULL
};
/// Vector with associated FE space and LinearFormIntegrators.
class LinearForm : public Vector
{
friend LinearFormExtension;
protected:
/// FE space on which the LinearForm lives. Not owned.
FiniteElementSpace *fes;
/// The assembly level of the form (legacy or full)
LinearAssemblyLevel assembly;
/** @brief Extension for supporting different assembly levels. */
LinearFormExtension *ext;
/** @brief Indicates the LinearFormIntegrator%s stored in #domain_integs,
#domain_delta_integs, #boundary_integs, and #boundary_face_integs are
owned by another LinearForm. */
@@ -75,7 +96,7 @@ public:
/// Creates linear form associated with FE space @a *f.
/** The pointer @a f is not owned by the newly constructed object. */
LinearForm(FiniteElementSpace *f) : Vector(f->GetVSize())
{ fes = f; extern_lfs = 0; UseDevice(true); }
{ fes = f; ext = nullptr; extern_lfs = 0; UseDevice(true); }
/** @brief Create a LinearForm on the FiniteElementSpace @a f, using the
same integrators as the LinearForm @a lf.
@@ -90,7 +111,7 @@ public:
/** The associated FiniteElementSpace can be set later using one of the
methods: Update(FiniteElementSpace *) or
Update(FiniteElementSpace *, Vector &, int). */
LinearForm() { fes = NULL; extern_lfs = 0; UseDevice(true); }
LinearForm() { fes = NULL; ext = nullptr; extern_lfs = 0; UseDevice(true); }
/// Construct a LinearForm using previously allocated array @a data.
/** The LinearForm does not assume ownership of @a data which is assumed to
@@ -98,7 +119,7 @@ public:
for externally allocated array, the pointer @a data can be NULL. The data
array can be replaced later using the method SetData(). */
LinearForm(FiniteElementSpace *f, double *data) : Vector(data, f->GetVSize())
{ fes = f; extern_lfs = 0; }
{ fes = f; ext = nullptr; extern_lfs = 0; }
/// Copy assignment. Only the data of the base class Vector is copied.
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
@@ -155,6 +176,9 @@ public:
coefficients. */
Array<LinearFormIntegrator*> *GetDLFI() { return &domain_integs; }
/// Access the element attribute marker (of length mesh->attributes)
Array<Array<int>*> *GetDLFIM() { return &domain_integs_marker; }
/** @brief Access all integrators added with AddDomainIntegrator() which are
DeltaLFIntegrator%s with delta coefficients. */
Array<DeltaLFIntegrator*> *GetDLFI_Delta() { return &domain_delta_integs; }
@@ -173,6 +197,10 @@ public:
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetFLFI_Marker() { return &boundary_face_integs_marker; }
/// Set the desired assembly level, default is LinearAssemblyLevel::LEGACY.
/** This method must be called before assembly. */
void SetAssemblyLevel(LinearAssemblyLevel);
/// Assembles the linear form i.e. sums over all domain/bdr integrators.
void Assemble();
@@ -184,11 +212,10 @@ public:
updated, e.g. after its associated Mesh object has been refined.
@note This method does not perform assembly. */
void Update() { SetSize(fes->GetVSize()); ResetDeltaLocations(); }
void Update();
/// Associate a new FE space, @a *f, with this object and Update() it. */
void Update(FiniteElementSpace *f)
{ fes = f; SetSize(f->GetVSize()); ResetDeltaLocations(); }
void Update(FiniteElementSpace *f);
/** @brief Associate a new FE space, @a *f, with this object and use the data
of @a v, offset by @a v_offset, to initialize this object's Vector::data.
+104
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@@ -0,0 +1,104 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "linearform.hpp"
#include "../general/forall.hpp"
// Implementations of FullLinearFormExtension.
namespace mfem
{
FullLinearFormExtension::FullLinearFormExtension(LinearForm *lf):
LinearFormExtension(lf)
{
Update();
}
void FullLinearFormExtension::Assemble()
{
MFEM_VERIFY(lf->Size() == lf->FESpace()->GetVSize(), "");
// Filter out the unsupported integrators
MFEM_VERIFY(lf->GetBLFI()->Size() == 0,
"Integrators added with AddBoundaryIntegrator() "
"are not supported!");
MFEM_VERIFY(lf->GetDLFI_Delta()->Size() == 0, ""
"Integrators added with AddDomainIntegrator() which are "
"DeltaLFIntegrators with delta coefficients "
"are not supported!");
MFEM_VERIFY(lf->GetIFLFI()->Size() == 0,
"Integrators added with AddInteriorFaceIntegrator() "
"are not supported!");
MFEM_VERIFY(lf->GetFLFI()->Size() == 0,
"Integrators added with AddBdrFaceIntegrator() "
" are not supported!");
const FiniteElementSpace &fes = *lf->FESpace();
const Array<Array<int>*> &domain_integs_marker = *lf->GetDLFIM();
const int mesh_attributes_size = fes.GetMesh()->attributes.Size();
const Array<LinearFormIntegrator*> &domain_integs = *lf->GetDLFI();
for (int k = 0; k < domain_integs.Size(); ++k)
{
// Get the markers for this integrator
const Array<int> *domain_integs_marker_k = domain_integs_marker[k];
// check if there are markers for this integrator
const bool has_markers_k = domain_integs_marker_k != nullptr;
if (has_markers_k)
{
// Element attribute marker should be of length mesh->attributes
MFEM_VERIFY(mesh_attributes_size == domain_integs_marker_k->Size(),
"invalid element marker for domain linear form "
"integrator #" << k << ", counting from zero");
}
const int NE = fes.GetNE();
auto markers_w = markers.Write();
// if there are no markers, just use the whole linear form (1)
if (!has_markers_k)
{
// done this way as operator= for array are still done on the host
MFEM_FORALL(e, NE, markers_w[e] = 1;);
}
else
{
// otherwise, scan the attributes to set the markers to 0 or 1
const auto attr = attributes.Read();
const auto dimk = domain_integs_marker_k->Read();
MFEM_FORALL(e, NE, markers_w[e] = dimk[attr[e]-1] == 1;);
}
domain_integs[k]->AssembleFull(fes, markers, *lf);
}
}
void FullLinearFormExtension::Update()
{
MFEM_VERIFY(lf->Size() == lf->FESpace()->GetVSize(), "");
const int ne = lf->FESpace()->GetNE();
const Mesh &mesh = *lf->FESpace()->GetMesh();
markers.SetSize(ne);
// Gather the attributes on the host from all the elements
attributes.SetSize(ne);
for (int i = 0; i < ne; ++i) { attributes[i] = mesh.GetAttribute(i); }
}
} // namespace mfem
+71
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@@ -0,0 +1,71 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_LINEARFORM_EXT
#define MFEM_LINEARFORM_EXT
#include "../general/array.hpp"
namespace mfem
{
class LinearForm;
class FullLinearFormExtension;
/// Class extending the LinearForm class to support different AssemblyLevels.
class LinearFormExtension
{
protected:
/// Linear form from which this extension depends. Not owned.
LinearForm *lf;
public:
LinearFormExtension(LinearForm *lf): lf(lf) { }
virtual ~LinearFormExtension() { }
/// Updates the linear form extension
virtual void Update() = 0;
/// Assemble at the level given for the linear form extension
virtual void Assemble() = 0;
/// Assembles delta functions of the linear form extension
virtual void AssembleDelta() = 0;
};
/// Data and methods for fully-assembled linear forms
class FullLinearFormExtension : public LinearFormExtension
{
private:
/// Attributes of all mesh elements.
Array<int> attributes;
/// Temporary markers for device kernels.
Array<int> markers;
public:
FullLinearFormExtension(LinearForm *lf);
/// Fully assembles the linear form, compatible with device execution.
/// Only integrators added with AddDomainIntegrator are supported.
void Assemble() override;
/// Fully assembles the delta functions of the linear form.
/// Not yet supported.
void AssembleDelta() override { MFEM_ABORT("Not yet supported!"); }
void Update() override;
};
} // namespace mfem
#endif // MFEM_LINEARFORM_EXT
+58 -3
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@@ -9,13 +9,21 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include <cmath>
namespace mfem
{
void LinearFormIntegrator::AssembleFull(const FiniteElementSpace&,
const Array<int> &markers,
Vector &b)
{
MFEM_CONTRACT_VAR(b);
MFEM_CONTRACT_VAR(markers);
mfem_error("LinearFormIntegrator::AssembleFull(...)");
}
void LinearFormIntegrator::AssembleRHSElementVect(
const FiniteElement &el, FaceElementTransformations &Tr, Vector &elvect)
{
@@ -280,12 +288,11 @@ void VectorDomainLFIntegrator::AssembleRHSElementVect(
val = Tr.Weight();
el.CalcShape(ip, shape);
Q.Eval (Qvec, Tr, ip);
Q.Eval(Qvec, Tr, ip);
for (int k = 0; k < vdim; k++)
{
cf = val * Qvec(k);
for (int s = 0; s < dof; s++)
{
elvect(dof*k+s) += ip.weight * cf * shape(s);
@@ -311,6 +318,54 @@ void VectorDomainLFIntegrator::AssembleDeltaElementVect(
MultVWt(shape, Qvec, elvec_as_mat);
}
void VectorDomainLFGradIntegrator::AssembleRHSElementVect(
const FiniteElement &el, ElementTransformation &Tr, Vector &elvect)
{
const int dim = el.GetDim();
const int dof = el.GetDof();
const int vdim = Q.GetVDim();
const int sdim = Tr.GetSpaceDim();
dshape.SetSize(dof,sdim);
elvect.SetSize(dof*(vdim/sdim));
elvect = 0.0;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int intorder = 2 * el.GetOrder();
ir = &IntRules.Get(el.GetGeomType(), intorder);
}
Vector pelvect(dof);
Vector part_x(dim);
for (int q = 0; q < ir->GetNPoints(); q++)
{
const IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
el.CalcPhysDShape(Tr, dshape);
Q.Eval(Qvec, Tr, ip);
Qvec *= ip.weight * Tr.Weight();
for (int k = 0; k < vdim/sdim; k++)
{
for (int d=0; d < sdim; ++d) { part_x(d) = Qvec(k*sdim+d); }
dshape.Mult(part_x, pelvect);
for (int s = 0; s < dof; ++s) { elvect(s+k*dof) += pelvect(s); }
}
}
}
void VectorDomainLFGradIntegrator::AssembleDeltaElementVect(
const FiniteElement&, ElementTransformation&, Vector&)
{
MFEM_ABORT("Not implemented!");
}
void VectorBoundaryLFIntegrator::AssembleRHSElementVect(
const FiniteElement &el, ElementTransformation &Tr, Vector &elvect)
{
+48
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@@ -27,6 +27,11 @@ protected:
LinearFormIntegrator(const IntegrationRule *ir = NULL) { IntRule = ir; }
public:
/// Method defining full assembly
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -110,6 +115,10 @@ public:
DomainLFIntegrator(Coefficient &QF, const IntegrationRule *ir)
: DeltaLFIntegrator(QF, ir), Q(QF), oa(1), ob(1) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -136,6 +145,10 @@ public:
DomainLFGradIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -223,6 +236,10 @@ public:
VectorDomainLFIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -236,6 +253,37 @@ public:
using LinearFormIntegrator::AssembleRHSElementVect;
};
/** Class for domain integrator L(v) := (f, grad v), where
f=(f1x,f1y,f1z,...,fnx,fny,fnz) and v=(v1,...,vn). */
class VectorDomainLFGradIntegrator : public DeltaLFIntegrator
{
private:
Vector shape, Qvec;
VectorCoefficient &Q;
DenseMatrix dshape;
public:
/// Constructs the domain integrator (Q, grad v)
VectorDomainLFGradIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b) override;
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
ElementTransformation &Tr,
Vector &elvect) override;
virtual void AssembleDeltaElementVect(const FiniteElement &fe,
ElementTransformation &Trans,
Vector &elvect) override;
using LinearFormIntegrator::AssembleRHSElementVect;
};
/** Class for boundary integration of L(v) := (g, v), where
f=(f1,...,fn) and v=(v1,...,vn). */
class VectorBoundaryLFIntegrator : public LinearFormIntegrator
+104
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@@ -0,0 +1,104 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void DomainLFIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
const int vdim = fes.GetVDim();
MFEM_VERIFY(vdim == 1, "vdim should be equal to 1!");
GetOrder_f qorder_fct = [&](int el_order) { return oa * el_order + ob; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, qorder_fct);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
if (ConstantCoefficient *cQ =
dynamic_cast<ConstantCoefficient*>(&Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient *cQ =
dynamic_cast<QuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = cQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == vdim*NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
coeff.SetSize(NQ * NE);
auto C = Reshape(coeff.HostWrite(), NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
C(q,e) = Q.Eval(T, ir->IntPoint(q));
}
}
}
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
LinearFormExtensionKernel_f ker = nullptr;
if (dim==2) { ker=VectorDomainLFIntegratorAssemble2D; }
if (dim==3) { ker=VectorDomainLFIntegratorAssemble3D; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1, BENCH_FULL_DomainLF_3D_GLL
case 0x322: ker=VectorDomainLFIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFIntegratorAssemble3D<5,5>; break;
case 0x366: ker=VectorDomainLFIntegratorAssemble3D<6,6>; break;
// 3D kernels, q=p+2, BENCH_FULL_DomainLF_3D_GL
case 0x323: ker=VectorDomainLFIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFIntegratorAssemble3D<5,6>; break;
case 0x367: ker=VectorDomainLFIntegratorAssemble3D<6,7>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
+263
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@@ -0,0 +1,263 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
// Internal header, included only by .cpp files
#include "fem.hpp"
#include "../fem/kernels.hpp"
#include "../general/forall.hpp"
#include "../linalg/kernels.hpp"
namespace mfem
{
namespace internal
{
namespace linearform_extension
{
/// Signature of the kernels used for linear form extension
using LinearFormExtensionKernel_f = void (*)(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *g,
const int *idx,
const double *J,
const double *detJ,
const double *weights,
const Vector &coeff,
double *output);
/// Signature of the function used to compute the quadrature order
using GetOrder_f = std::function<int(int)>;
/// Internal helper function to get the integration rule
inline const IntegrationRule *GetIntRuleFromOrder(const FiniteElementSpace &fes,
const IntegrationRule *IntRule,
const GetOrder_f &qorder_fct)
{
const FiniteElement &fe = *fes.GetFE(0);
const int qorder = qorder_fct(fe.GetOrder());
const Geometry::Type geom_type = fe.GetGeomType();
return IntRule ? IntRule : &IntRules.Get(geom_type, qorder);
}
/// Internal helper function to encode the ID of a LinearFormExtension kernel
/// The ID is equal to: (dim << 8) |
/// (1D number of degrees of freedom << 4) |
/// (1D number of quadrature points)
inline int GetKernelId(const FiniteElementSpace &fes,
const IntegrationRule *ir)
{
Mesh *mesh = fes.GetMesh();
const int dim = mesh->Dimension();
const FiniteElement &el = *fes.GetFE(0);
const DofToQuad &maps = el.GetDofToQuad(*ir, DofToQuad::TENSOR);
const int d = maps.ndof;
const int q = maps.nqpt;
return (dim << 8) | (d << 4) | q;
}
/// Internal helper function to launch the LinearFormExtension kernel
inline void Launch(const LinearFormExtensionKernel_f &kernel,
const FiniteElementSpace &fes,
const IntegrationRule *ir,
const Vector &coeff,
const Array<int> &markers,
Vector &y)
{
Mesh *mesh = fes.GetMesh();
const int vdim = fes.GetVDim();
const bool byVDIM = fes.GetOrdering() == Ordering::byVDIM;
const FiniteElement &el = *fes.GetFE(0);
constexpr int flags = GeometricFactors::JACOBIANS |
GeometricFactors::DETERMINANTS;
const MemoryType mt = Device::GetDeviceMemoryType();
const GeometricFactors *geom = mesh->GetGeometricFactors(*ir, flags, mt);
const DofToQuad &maps = el.GetDofToQuad(*ir, DofToQuad::TENSOR);
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes.GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
MFEM_ASSERT(ER, "Not supported!");
const int *M = markers.Read();
const double *B = maps.B.Read();
const double *G = maps.G.Read();
const double *J = geom->J.Read();
const double *detJ = geom->detJ.Read();
const int *I = ER->GatherMap().Read();
const double *W = ir->GetWeights().Read();
double *Y = y.ReadWrite();
const int ND = fes.GetNDofs();
const int NE = fes.GetMesh()->GetNE();
const int d = maps.ndof;
const int q = maps.nqpt;
kernel(vdim, byVDIM, ND, NE, d, q, M, B, G, I, J, detJ, W, coeff, Y);
}
/// Internal assembly kernel for the 2D (Vector)DomainLFIntegrator
template<int D=0, int Q=0> static
void VectorDomainLFIntegratorAssemble2D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *, // g
const int *idx,
const double *, // jacobians
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto DetJ = Reshape(detJ, q,q, NE);
const auto W = Reshape(weights, q,q);
const auto I = Reshape(idx, d,d, NE);
const auto C = cst_coeff ? Reshape(F,vdim,1,1,1) : Reshape(F,vdim,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = 2*q*(d+q);
constexpr int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = 2*Q*(D+Q);
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), q,d);
const DeviceMatrix QQ(DeviceMemAlloc(sm,q*q), q,q);
const DeviceMatrix QD(DeviceMemAlloc(sm,q*d), q,d);
kernels::internal::LoadB(d,q,B,Bt);
for (int c = 0; c < vdim; ++c)
{
const double cst_val = C(c,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
const double detJ = DetJ(x,y,e);
const double coeff_val = cst_coeff ? cst_val : C(c,x,y,e);
QQ(y,x) = W(x,y) * coeff_val * detJ;
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic2DEvalTranspose(d,q,Bt,QQ,QD,I,Y,c,e,byVDIM);
}
});
}
/// Internal assembly kernel for the 2D (Vector)DomainLFIntegrator
template<int D=0, int Q=0> static
void VectorDomainLFIntegratorAssemble3D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *, // g
const int *idx,
const double *, // jacobians
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto DetJ = Reshape(detJ, q,q,q, NE);
const auto W = Reshape(weights, q,q,q);
const auto I = Reshape(idx, d,d,d, NE);
const auto C = cst_coeff ? Reshape(F,vdim,1,1,1,1):Reshape(F,vdim,q,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = q*d + q*q*q;
const int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_VERIFY(q < 32, "Unsupported quadrature order!");
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
double u[Q>0?Q:32];
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = Q*D + Q*Q*Q;
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceCube QQQ(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), q,d);
kernels::internal::LoadB(d,q,B,Bt);
for (int c = 0; c < vdim; ++c)
{
const double cst_val = C(c,0,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
for (int z = 0; z < q; ++z)
{
const double detJ = DetJ(x,y,z,e);
const double coeff_val = cst_coeff ? cst_val : C(c,x,y,z,e);
QQQ(z,y,x) = W(x,y,z) * coeff_val * detJ;
}
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic3DEvalTranspose(d,q,u,Bt,QQQ,I,Y,c,e,byVDIM);
}
});
}
} // namespace linearform_extension
} // namespace internal
} // namespace mfem
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
#include "lininteg_domain_grad.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void DomainLFGradIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
MFEM_VERIFY(fes.GetVDim()==1, "vdim != 1");
GetOrder_f gof = [](const int el_order) { return 2.0 * el_order; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, gof);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
coeff = vcQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient *vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
const int qvdim = Q.GetVDim();
Vector Qvec(qvdim);
coeff.SetSize(qvdim * NQ * NE);
auto C = Reshape(coeff.HostWrite(), qvdim, NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
Q.Eval(Qvec, T, ir->IntPoint(q));
for (int c=0; c<qvdim; ++c)
{
C(c,q,e) = Qvec[c];
}
}
}
}
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
LinearFormExtensionKernel_f ker = nullptr;
if (dim==2) { ker=VectorDomainLFGradIntegratorAssemble2D; }
if (dim==3) { ker=VectorDomainLFGradIntegratorAssemble3D; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFGradIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFGradIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFGradIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFGradIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFGradIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFGradIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFGradIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFGradIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1
case 0x322: ker=VectorDomainLFGradIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFGradIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFGradIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFGradIntegratorAssemble3D<5,5>; break;
// 3D kernels, q=p+2
case 0x323: ker=VectorDomainLFGradIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFGradIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFGradIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFGradIntegratorAssemble3D<5,6>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
// Internal header, included only by .cpp files
#include "fem.hpp"
#include "../general/forall.hpp"
#include "../fem/kernels.hpp"
#include "../linalg/kernels.hpp"
namespace mfem
{
namespace internal
{
namespace linearform_extension
{
////////////////////////////////////////////////////////////////////////////////
template<int D=0, int Q=0> static
void VectorDomainLFGradIntegratorAssemble2D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *g,
const int *idx,
const double *jacobians,
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr int DIM = 2;
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim*DIM;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto G = Reshape(g, q,d);
const auto J = Reshape(jacobians, q,q, DIM,DIM, NE);
const auto DetJ = Reshape(detJ, q,q, NE);
const auto W = Reshape(weights, q,q);
const auto I = Reshape(idx, d,d, NE);
const auto C = cst_coeff ?
Reshape(F,DIM,vdim,1,1,1):
Reshape(F,DIM,vdim,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = 2*d*q + 4*q*q;
const int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = 2*D*Q + 4*Q*Q;
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), d,q);
const DeviceMatrix Gt(DeviceMemAlloc(sm,q*d), d,q);
kernels::internal::LoadBGt(d,q,B,G,Bt,Gt);
const DeviceMatrix QQ0(DeviceMemAlloc(sm,q*q), q,q);
const DeviceMatrix QQ1(DeviceMemAlloc(sm,q*q), q,q);
const DeviceMatrix DQ0(DeviceMemAlloc(sm,d*q), d,q);
const DeviceMatrix DQ1(DeviceMemAlloc(sm,d*q), d,q);
for (int c = 0; c < vdim; ++c)
{
const double cst_val0 = C(0,c,0,0,0);
const double cst_val1 = C(1,c,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
double Jloc[4], Jinv[4];
Jloc[0] = J(x,y,0,0,e);
Jloc[1] = J(x,y,1,0,e);
Jloc[2] = J(x,y,0,1,e);
Jloc[3] = J(x,y,1,1,e);
const double detJ = DetJ(x,y,e);
kernels::CalcInverse<2>(Jloc, Jinv);
const double weight = W(x,y);
const double u = cst_coeff ? cst_val0 : C(0,c,x,y,e);
const double v = cst_coeff ? cst_val1 : C(1,c,x,y,e);
QQ0(y,x) = Jinv[0]*u + Jinv[2]*v;
QQ1(y,x) = Jinv[1]*u + Jinv[3]*v;
QQ0(y,x) *= weight * detJ;
QQ1(y,x) *= weight * detJ;
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic2DGradTranspose(d,q,Bt,Gt,
QQ0,QQ1,DQ0,DQ1,
I,Y,c,e,byVDIM);
}
});
}
template<int D=0, int Q=0> static
void VectorDomainLFGradIntegratorAssemble3D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *g,
const int *idx,
const double *jacobians,
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr int DIM = 3;
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim*DIM;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto G = Reshape(g, q,d);
const auto J = Reshape(jacobians, q,q,q, DIM,DIM, NE);
const auto DetJ = Reshape(detJ, q,q,q, NE);
const auto W = Reshape(weights, q,q,q);
const auto I = Reshape(idx, d,d,d, NE);
const auto C = cst_coeff ?
Reshape(F,DIM,vdim,1,1,1,1):
Reshape(F,DIM,vdim,q,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = 2*q*d + 6*q*q*q;
const int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = 2*Q*D + 6*Q*Q*Q;
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), d,q);
const DeviceMatrix Gt(DeviceMemAlloc(sm,q*d), d,q);
kernels::internal::LoadBGt(d,q,B,G,Bt,Gt);
const DeviceCube QQ0(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceCube QQ1(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceCube QQ2(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceCube QD0(DeviceMemAlloc(sm,q*q*q), q,q,d);
const DeviceCube QD1(DeviceMemAlloc(sm,q*q*q), q,q,d);
const DeviceCube QD2(DeviceMemAlloc(sm,q*q*q), q,q,d);
const DeviceCube DD0(QQ0,q,d,d);
const DeviceCube DD1(QQ1,q,d,d);
const DeviceCube DD2(QQ2,q,d,d);
for (int c = 0; c < vdim; ++c)
{
const double cst_val_0 = C(0,c,0,0,0,0);
const double cst_val_1 = C(1,c,0,0,0,0);
const double cst_val_2 = C(2,c,0,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
for (int z = 0; z < q; ++z)
{
double Jloc[9], Jinv[9];
for (int j = 0; j < 3; j++)
{
for (int i = 0; i < 3; i++)
{
Jloc[i+3*j] = J(x,y,z,i,j,e);
}
}
const double detJ = DetJ(x,y,z,e);
kernels::CalcInverse<3>(Jloc, Jinv);
const double weight = W(x,y,z);
const double u = cst_coeff ? cst_val_0 : C(0,c,x,y,z,e);
const double v = cst_coeff ? cst_val_1 : C(1,c,x,y,z,e);
const double w = cst_coeff ? cst_val_2 : C(2,c,x,y,z,e);
QQ0(z,y,x) = Jinv[0]*u + Jinv[3]*v + Jinv[6]*w;
QQ1(z,y,x) = Jinv[1]*u + Jinv[4]*v + Jinv[7]*w;
QQ2(z,y,x) = Jinv[2]*u + Jinv[5]*v + Jinv[8]*w;
QQ0(z,y,x) *= weight * detJ;
QQ1(z,y,x) *= weight * detJ;
QQ2(z,y,x) *= weight * detJ;
}
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic3DGrad(d,q,Bt,Gt,
QQ0,QQ1,QQ2,
QD0,QD1,QD2,
DD0,DD1,DD2,
I,Y,c,e,byVDIM);
}
});
}
} // namespace linearform_extension
} // namespace internal
} // namespace mfem
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void VectorDomainLFIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
const int vdim = fes.GetVDim();
GetOrder_f gof = [](const int el_order) { return 2.0 * el_order; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, gof);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
coeff = vcQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient *vQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = vQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == vdim*NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
Vector Qvec(vdim);
coeff.SetSize(vdim * NQ * NE);
auto C = Reshape(coeff.HostWrite(), vdim, NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
Q.Eval(Qvec, T, ir->IntPoint(q));
for (int c=0; c<vdim; ++c) { C(c,q,e) = Qvec[c]; }
}
}
}
LinearFormExtensionKernel_f ker = nullptr;
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
if (dim==2) { ker = VectorDomainLFIntegratorAssemble2D<>; }
if (dim==3) { ker = VectorDomainLFIntegratorAssemble3D<>; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1
case 0x322: ker=VectorDomainLFIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFIntegratorAssemble3D<5,5>; break;
// 3D kernels, q=p+2
case 0x323: ker=VectorDomainLFIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFIntegratorAssemble3D<5,6>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
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@@ -0,0 +1,116 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
#include "lininteg_domain_grad.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void VectorDomainLFGradIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
const int vdim = fes.GetVDim();
GetOrder_f gof = [](const int el_order) { return 2.0 * el_order; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, gof);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
const int NS = fes.GetMesh()->SpaceDimension();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
coeff = vcQ->GetVec();
}
else if (QuadratureFunctionCoefficient *qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = qfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else if (VectorQuadratureFunctionCoefficient* vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qFun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == vdim * NS * NQ * NE,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
Vector Qvec(vdim);
coeff.SetSize(vdim * NQ * NE);
auto C = Reshape(coeff.HostWrite(), vdim, NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation &Tr = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
Q.Eval(Qvec, Tr, ir->IntPoint(q));
for (int c = 0; c<vdim; ++c) { C(c,q,e) = Qvec[c]; }
}
}
}
LinearFormExtensionKernel_f ker = nullptr;
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
if (dim==2) { ker=VectorDomainLFGradIntegratorAssemble2D; }
if (dim==3) { ker=VectorDomainLFGradIntegratorAssemble3D; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFGradIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFGradIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFGradIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFGradIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFGradIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFGradIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFGradIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFGradIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1
case 0x322: ker=VectorDomainLFGradIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFGradIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFGradIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFGradIntegratorAssemble3D<5,5>; break;
// 3D kernels, q=p+2
case 0x323: ker=VectorDomainLFGradIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFGradIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFGradIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFGradIntegratorAssemble3D<5,6>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
+472 -15
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@@ -10,8 +10,21 @@
// CONTRIBUTING.md for details.
#include "lor.hpp"
#include "lor_assembly.hpp"
#include "restriction.hpp"
#include "pbilinearform.hpp"
#include "../mfem-performance.hpp"
#include "../general/forall.hpp"
#define MFEM_DEBUG_COLOR 220
#include "../general/debug.hpp"
#define MFEM_NVTX_COLOR Turquoise
#include "../general/nvtx.hpp"
#include <limits.h>
namespace mfem
{
@@ -21,12 +34,15 @@ void LORBase::AddIntegrators(BilinearForm &a_from,
AddIntegratorFn add_integrator,
const IntegrationRule *ir)
{
MFEM_NVTX;
Array<BilinearFormIntegrator*> *integrators = (a_from.*get_integrators)();
for (int i=0; i<integrators->Size(); ++i)
{
(a_to.*add_integrator)((*integrators)[i]);
ir_map[(*integrators)[i]] = ((*integrators)[i])->GetIntegrationRule();
if (ir) { ((*integrators)[i])->SetIntegrationRule(*ir); }
BilinearFormIntegrator *integrator = (*integrators)[i];
if (!integrator->SupportsBatchedLOR()) { supports_batched_assembly = false; }
(a_to.*add_integrator)(integrator);
ir_map[integrator] = integrator->GetIntegrationRule();
if (ir) { integrator->SetIntegrationRule(*ir); }
}
}
@@ -38,21 +54,24 @@ void LORBase::AddIntegratorsAndMarkers(BilinearForm &a_from,
AddIntegratorFn add_integrator,
const IntegrationRule *ir)
{
MFEM_NVTX;
Array<BilinearFormIntegrator*> *integrators = (a_from.*get_integrators)();
Array<Array<int>*> *markers = (a_from.*get_markers)();
for (int i=0; i<integrators->Size(); ++i)
{
BilinearFormIntegrator *integrator = (*integrators)[i];
if (*markers[i])
{
(a_to.*add_integrator_marker)((*integrators)[i], *(*markers[i]));
(a_to.*add_integrator_marker)(integrator, *(*markers[i]));
}
else
{
(a_to.*add_integrator)((*integrators)[i]);
(a_to.*add_integrator)(integrator);
}
ir_map[(*integrators)[i]] = ((*integrators)[i])->GetIntegrationRule();
if (ir) { ((*integrators)[i])->SetIntegrationRule(*ir); }
if (!integrator->SupportsBatchedLOR()) { supports_batched_assembly = false; }
ir_map[integrator] = integrator->GetIntegrationRule();
if (ir) { integrator->SetIntegrationRule(*ir); }
}
}
@@ -84,6 +103,7 @@ int LORBase::GetLOROrder() const
void LORBase::ConstructLocalDofPermutation(Array<int> &perm_) const
{
MFEM_NVTX;
FESpaceType type = GetFESpaceType();
MFEM_VERIFY(type != H1 && type != L2, "");
@@ -203,6 +223,7 @@ void LORBase::ConstructLocalDofPermutation(Array<int> &perm_) const
void LORBase::ConstructDofPermutation() const
{
MFEM_NVTX;
FESpaceType type = GetFESpaceType();
if (type == H1 || type == L2)
{
@@ -261,8 +282,24 @@ const OperatorHandle &LORBase::GetAssembledSystem() const
return A;
}
const LORRestriction *LORBase::GetLORRestriction() const
{
if (R_lor == NULL)
{
R_lor = new LORRestriction(fes_ho);
}
return R_lor;
}
void LORBase::AssembleSystem_(BilinearForm &a_ho, const Array<int> &ess_dofs)
{
dbg();
MFEM_NVTX;
// By default, we want to use "batched assembly", however this is only
// supported for certain integrators. We set it to true here, and then when
// we loop through the integrators, if we encounter unsupported integrators,
// we set it to false.
supports_batched_assembly = true;
a->UseExternalIntegrators();
AddIntegrators(a_ho, *a, &BilinearForm::GetDBFI,
&BilinearForm::AddDomainIntegrator, ir_el);
@@ -276,8 +313,35 @@ void LORBase::AssembleSystem_(BilinearForm &a_ho, const Array<int> &ess_dofs)
&BilinearForm::GetBFBFI_Marker,
&BilinearForm::AddBdrFaceIntegrator,
&BilinearForm::AddBdrFaceIntegrator, ir_face);
a->Assemble();
a->FormSystemMatrix(ess_dofs, A);
if (supports_batched_assembly)
{
dbg("supports_batched_assembly");
fes_ho.GetMesh()->EnsureNodes();
#ifdef MFEM_USE_MPI
ParFiniteElementSpace *pfes_ho =
dynamic_cast<ParFiniteElementSpace*>(&fes_ho);
if (pfes_ho)
{
dbg("=> PARALLEL AssembleBatchedLOR");
ParAssembleBatchedLOR(*this, *a, fes_ho, ess_dofs, A);
}
else
{
dbg("=> SEQUENTIAL AssembleBatchedLOR");
AssembleBatchedLOR(*this, *a, fes_ho, ess_dofs, A);
}
#else
AssembleBatchedLOR(*this, *a, fes_ho, ess_dofs, A);
#endif
}
else
{
dbg("NOT supports_batched_assembly");
a->Assemble();
a->FormSystemMatrix(ess_dofs, A);
}
ResetIntegrationRules(&BilinearForm::GetDBFI);
ResetIntegrationRules(&BilinearForm::GetFBFI);
ResetIntegrationRules(&BilinearForm::GetBBFI);
@@ -286,6 +350,7 @@ void LORBase::AssembleSystem_(BilinearForm &a_ho, const Array<int> &ess_dofs)
void LORBase::SetupProlongationAndRestriction()
{
MFEM_NVTX;
if (!HasSameDofNumbering())
{
Array<int> p;
@@ -348,6 +413,7 @@ void CheckBasisType(const FiniteElementSpace &fes)
LORBase::LORBase(FiniteElementSpace &fes_ho_)
: irs(0, Quadrature1D::GaussLobatto), fes_ho(fes_ho_)
{
MFEM_NVTX;
Mesh &mesh_ = *fes_ho_.GetMesh();
int dim = mesh_.Dimension();
Array<Geometry::Type> geoms;
@@ -363,6 +429,8 @@ LORBase::LORBase(FiniteElementSpace &fes_ho_)
ir_face = NULL;
}
a = NULL;
R_lor = NULL;
supports_batched_assembly = true;
}
LORBase::~LORBase()
@@ -378,14 +446,17 @@ LORDiscretization::LORDiscretization(BilinearForm &a_ho_,
int ref_type)
: LORDiscretization(*a_ho_.FESpace(), ref_type)
{
MFEM_NVTX;
AssembleSystem(a_ho_, ess_tdof_list);
}
LORDiscretization::LORDiscretization(FiniteElementSpace &fes_ho,
int ref_type) : LORBase(fes_ho)
{
MFEM_NVTX;
CheckBasisType(fes_ho);
#if 0
Mesh &mesh_ho = *fes_ho.GetMesh();
// For H1, ND and RT spaces, use refinement = element order, for DG spaces,
// use refinement = element order + 1 (since LOR is p = 0 in this case).
@@ -400,21 +471,29 @@ LORDiscretization::LORDiscretization(FiniteElementSpace &fes_ho,
fec = fes_ho.FEColl()->Clone(GetLOROrder());
fes = new FiniteElementSpace(mesh, fec);
SetupProlongationAndRestriction();
#else
mesh = NULL;
fec = NULL;
fes = NULL;
#endif
A.SetType(Operator::MFEM_SPARSEMAT);
}
void LORDiscretization::AssembleSystem(BilinearForm &a_ho,
const Array<int> &ess_dofs)
{
dbg();
MFEM_NVTX;
delete a;
a = new BilinearForm(&GetFESpace());
// a = new BilinearForm(&GetFESpace());
a = new BilinearForm(&fes_ho);
AssembleSystem_(a_ho, ess_dofs);
}
SparseMatrix &LORDiscretization::GetAssembledMatrix() const
{
MFEM_VERIFY(a != NULL && A.Ptr() != NULL, "No LOR system assembled");
dbg();
MFEM_VERIFY(a != nullptr && A.Ptr() != nullptr, "No LOR system assembled");
return *A.As<SparseMatrix>();
}
@@ -425,20 +504,26 @@ ParLORDiscretization::ParLORDiscretization(ParBilinearForm &a_ho_,
int ref_type)
: ParLORDiscretization(*a_ho_.ParFESpace(), ref_type)
{
dbg();
MFEM_NVTX;
AssembleSystem(a_ho_, ess_tdof_list);
}
ParLORDiscretization::ParLORDiscretization(ParFiniteElementSpace &fes_ho,
int ref_type) : LORBase(fes_ho)
{
dbg();
MFEM_NVTX;
if (fes_ho.GetMyRank() == 0) { CheckBasisType(fes_ho); }
// TODO: support variable-order spaces in parallel
MFEM_VERIFY(!fes_ho.IsVariableOrder(),
"Cannot construct LOR operators on variable-order spaces");
#if 0
int order = fes_ho.GetMaxElementOrder();
if (GetFESpaceType() == L2) { ++order; }
NVTX("ParMesh");
ParMesh &mesh_ho = *fes_ho.GetParMesh();
ParMesh *pmesh = new ParMesh(ParMesh::MakeRefined(mesh_ho, order, ref_type));
mesh = pmesh;
@@ -447,6 +532,11 @@ ParLORDiscretization::ParLORDiscretization(ParFiniteElementSpace &fes_ho,
ParFiniteElementSpace *pfes = new ParFiniteElementSpace(pmesh, fec);
fes = pfes;
SetupProlongationAndRestriction();
#else
mesh = NULL;
fec = NULL;
fes = NULL;
#endif
A.SetType(Operator::Hypre_ParCSR);
}
@@ -454,14 +544,19 @@ ParLORDiscretization::ParLORDiscretization(ParFiniteElementSpace &fes_ho,
void ParLORDiscretization::AssembleSystem(ParBilinearForm &a_ho,
const Array<int> &ess_dofs)
{
dbg();
MFEM_NVTX;
delete a;
a = new ParBilinearForm(&GetParFESpace());
// a = new ParBilinearForm(&GetParFESpace());
a = new ParBilinearForm(&dynamic_cast<ParFiniteElementSpace&>(fes_ho));
AssembleSystem_(a_ho, ess_dofs);
}
HypreParMatrix &ParLORDiscretization::GetAssembledMatrix() const
{
MFEM_VERIFY(a != NULL && A.Ptr() != NULL, "No LOR system assembled");
dbg();
MFEM_NVTX;
MFEM_VERIFY(a != nullptr && A.Ptr() != nullptr, "No LOR system assembled");
return *A.As<HypreParMatrix>();
}
@@ -470,6 +565,368 @@ ParFiniteElementSpace &ParLORDiscretization::GetParFESpace() const
return static_cast<ParFiniteElementSpace&>(*fes);
}
#endif
#endif // MFEM_USE_MPI
int LORRestriction::GetNRefinedElements(const FiniteElementSpace &fes)
{
int ref = fes.GetMaxElementOrder();
int dim = fes.GetMesh()->Dimension();
return pow(ref, dim);
}
FiniteElementCollection *LORRestriction::GetLowOrderFEC(
const FiniteElementSpace &fes)
{
return fes.FEColl()->Clone(1);
}
LORRestriction::LORRestriction(const FiniteElementSpace &fes_ho)
: fes_ho(fes_ho),
fec_lo(GetLowOrderFEC(fes_ho)),
geom(fes_ho.GetMesh()->GetElementGeometry(0)),
ne_ref(GetNRefinedElements(fes_ho)),
ne(fes_ho.GetNE()*ne_ref),
vdim(fes_ho.GetVDim()),
byvdim(fes_ho.GetOrdering() == Ordering::byVDIM),
ndofs(fes_ho.GetNDofs()),
dof(fec_lo->GetFE(geom, 1)->GetDof()),
offsets(ndofs+1),
indices(ne*dof),
gatherMap(ne*dof),
dof_glob2loc(),
dof_glob2loc_offsets(),
el_dof_lex()
{
MFEM_NVTX;
SetupLocalToElement();
SetupGlobalToLocal();
NVTX("EnsureNodes");
}
void LORRestriction::SetupLocalToElement()
{
MFEM_NVTX;
MFEM_VERIFY(ne>0, "ne==0 not supported");
const FiniteElement *fe = fec_lo->GetFE(geom, 1);
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
MFEM_VERIFY(el, "!TensorBasisElement");
const Array<int> &fe_dof_map = el->GetDofMap();
MFEM_VERIFY(fe_dof_map.Size() > 0, "invalid dof map");
const FiniteElement *fe_ho = fes_ho.GetFE(0);
const TensorBasisElement* tel_ho =
dynamic_cast<const TensorBasisElement*>(fe_ho);
MFEM_VERIFY(tel_ho, "!TensorBasisElement");
const Array<int> &fe_dof_map_ho = tel_ho->GetDofMap();
int order = fes_ho.GetMaxElementOrder();
RefinedGeometry &RG = *GlobGeometryRefiner.Refine(geom, order);
Array<int> local_dof_map(dof*ne_ref);
for (int ie_lo = 0; ie_lo < ne_ref; ++ie_lo)
{
for (int i = 0; i < dof; ++i)
{
int cart_idx = RG.RefGeoms[i + dof*ie_lo]; // local Cartesian index
local_dof_map[i + dof*ie_lo] = fe_dof_map_ho[cart_idx];
}
}
const Table& e2dTable_ho = fes_ho.GetElementToDofTable();
auto d_offsets = offsets.Write();
const int NDOFS = ndofs;
dbg();
MFEM_FORALL(i, NDOFS+1, d_offsets[i] = 0;);
const Memory<int> &J = e2dTable_ho.GetJMemory();
const MemoryClass mc = Device::GetDeviceMemoryClass();
const int *d_elementMap = J.Read(mc, J.Capacity());
const int *d_local_dof_map = local_dof_map.Read();
const int DOF = dof;
const int DOF_ho = fe_ho->GetDof();
const int NE = ne;
const int NR_REF = ne_ref;
dbg();
MFEM_FORALL(e, NE,
{
const int e_ho = e/NR_REF;
const int i_ref = e%NR_REF;
for (int d = 0; d < DOF; ++d)
{
const int d_ho = d_local_dof_map[d + i_ref*DOF];
const int sgid = d_elementMap[DOF_ho*e_ho + d_ho]; // signed
const int gid = (sgid >= 0) ? sgid : -1 - sgid;
AtomicAdd(d_offsets[gid+1], 1);
}
});
// Aggregate to find offsets for each global dof
offsets.HostReadWrite();
for (int i = 1; i <= ndofs; ++i) { offsets[i] += offsets[i - 1]; }
// For each global dof, fill in all local nodes that point to it
auto d_gather = gatherMap.Write();
auto d_indices = indices.Write();
auto drw_offsets = offsets.ReadWrite();
const auto dof_map_mem = fe_dof_map.GetMemory();
const auto d_dof_map = fe_dof_map.GetMemory().Read(mc,dof_map_mem.Capacity());
dbg();
MFEM_FORALL(e, NE,
{
const int e_ho = e/NR_REF;
const int i_ref = e%NR_REF;
for (int d = 0; d < DOF; ++d)
{
int d_ho = d_local_dof_map[d + i_ref*DOF];
const int sdid = d_dof_map[d]; // signed
// const int did = d;
const int sgid = d_elementMap[DOF_ho*e_ho + d_ho]; // signed
const int gid = (sgid >= 0) ? sgid : -1-sgid;
const int lid = DOF*e + d;
const bool plus = (sgid >= 0 && sdid >= 0) || (sgid < 0 && sdid < 0);
d_gather[lid] = plus ? gid : -1-gid;
d_indices[AtomicAdd(drw_offsets[gid], 1)] = plus ? lid : -1-lid;
}
});
dbg();
offsets.HostReadWrite();
for (int i = ndofs; i > 0; --i) { offsets[i] = offsets[i - 1]; }
offsets[0] = 0;
}
void LORRestriction::SetupGlobalToLocal()
{
MFEM_NVTX;
const int ndof = fes_ho.GetVSize();
const int nel_ho = fes_ho.GetMesh()->GetNE();
const int order = fes_ho.GetMaxElementOrder();
const int dim = fes_ho.GetMesh()->Dimension();
MFEM_VERIFY(dim==3, "Not supported");
const int nd1d = order + 1;
const int ndof_per_el = nd1d*nd1d*nd1d;
dof_glob2loc.SetSize(2*ndof_per_el*nel_ho);
dof_glob2loc_offsets.SetSize(ndof+1);
el_dof_lex.SetSize(ndof_per_el*nel_ho);
Array<int> dofs;
const Array<int> &lex_map =
dynamic_cast<const NodalFiniteElement&>
(*fes_ho.GetFE(0)).GetLexicographicOrdering();
dof_glob2loc_offsets = 0;
const Memory<int> &I = fes_ho.GetElementToDofTable().GetIMemory();
const Memory<int> &J = fes_ho.GetElementToDofTable().GetJMemory();
I.Read(MemoryClass::HOST, I.Capacity());
J.Read(MemoryClass::HOST, J.Capacity());
for (int iel_ho=0; iel_ho<nel_ho; ++iel_ho)
{
fes_ho.GetElementDofs(iel_ho, dofs);
for (int i=0; i<ndof_per_el; ++i)
{
const int dof = dofs[lex_map[i]];
el_dof_lex[i + iel_ho*ndof_per_el] = dof;
dof_glob2loc_offsets[dof+1] += 2;
}
}
dof_glob2loc_offsets.PartialSum();
// Sanity check
MFEM_VERIFY(dof_glob2loc_offsets[ndof] == dof_glob2loc.Size(), "");
Array<int> dof_ptr(ndof);
for (int i=0; i<ndof; ++i) { dof_ptr[i] = dof_glob2loc_offsets[i]; }
for (int iel_ho=0; iel_ho<nel_ho; ++iel_ho)
{
fes_ho.GetElementDofs(iel_ho, dofs);
for (int i=0; i<ndof_per_el; ++i)
{
const int dof = dofs[lex_map[i]];
dof_glob2loc[dof_ptr[dof]++] = iel_ho;
dof_glob2loc[dof_ptr[dof]++] = i;
}
}
}
static MFEM_HOST_DEVICE int GetMinElt(const int *my_elts, const int nbElts,
const int *nbr_elts, const int nbrNbElts)
{
// Find the minimal element index found in both my_elts[] and nbr_elts[]
int min_el = INT_MAX;
for (int i = 0; i < nbElts; i++)
{
const int e_i = my_elts[i];
if (e_i >= min_el) { continue; }
for (int j = 0; j < nbrNbElts; j++)
{
if (e_i==nbr_elts[j])
{
min_el = e_i; // we already know e_i < min_el
break;
}
}
}
return min_el;
}
int LORRestriction::FillI(SparseMatrix &mat) const
{
MFEM_NVTX;
static constexpr int Max = 16;
const int all_dofs = ndofs;
const int vd = vdim;
const int elt_dofs = dof;
auto I = mat.ReadWriteI();
auto d_offsets = offsets.Read();
auto d_indices = indices.Read();
auto d_gatherMap = gatherMap.Read();
MFEM_FORALL(i_L, vd*all_dofs+1, { I[i_L] = 0; });
MFEM_FORALL(e, ne,
{
for (int i = 0; i < elt_dofs; i++)
{
int i_elts[Max];
const int i_E = e*elt_dofs + i;
const int i_L = d_gatherMap[i_E];
const int i_offset = d_offsets[i_L];
const int i_nextOffset = d_offsets[i_L+1];
const int i_nbElts = i_nextOffset - i_offset;
for (int e_i = 0; e_i < i_nbElts; ++e_i)
{
const int i_E = d_indices[i_offset+e_i];
i_elts[e_i] = i_E/elt_dofs;
}
for (int j = 0; j < elt_dofs; j++)
{
const int j_E = e*elt_dofs + j;
const int j_L = d_gatherMap[j_E];
const int j_offset = d_offsets[j_L];
const int j_nextOffset = d_offsets[j_L+1];
const int j_nbElts = j_nextOffset - j_offset;
if (i_nbElts == 1 || j_nbElts == 1) // no assembly required
{
AtomicAdd(I[i_L],1);
}
else // assembly required
{
int j_elts[Max];
for (int e_j = 0; e_j < j_nbElts; ++e_j)
{
const int j_E = d_indices[j_offset+e_j];
const int elt = j_E/elt_dofs;
j_elts[e_j] = elt;
}
const int min_e = GetMinElt(i_elts, i_nbElts, j_elts, j_nbElts);
if (e == min_e) // add the nnz only once
{
AtomicAdd(I[i_L],1);
}
}
}
}
});
// We need to sum the entries of I, we do it on CPU as it is very sequential.
auto h_I = mat.HostReadWriteI();
const int nTdofs = vd*all_dofs;
int sum = 0;
for (int i = 0; i < nTdofs; i++)
{
const int nnz = h_I[i];
h_I[i] = sum;
sum+=nnz;
}
h_I[nTdofs] = sum;
// We return the number of nnz
return h_I[nTdofs];
}
void LORRestriction::FillJAndZeroData(SparseMatrix &mat) const
{
MFEM_NVTX;
static constexpr int Max = 8;
const int all_dofs = ndofs;
const int vd = vdim;
const int elt_dofs = dof;
auto I = mat.ReadWriteI();
auto J = mat.WriteJ();
auto Data = mat.WriteData();
const int NE = ne;
auto d_offsets = offsets.Read();
auto d_indices = indices.Read();
auto d_gatherMap = gatherMap.Read();
MFEM_FORALL(e, NE,
{
for (int i = 0; i < elt_dofs; i++)
{
int i_elts[Max];
const int i_E = e*elt_dofs + i;
const int i_L = d_gatherMap[i_E];
const int i_offset = d_offsets[i_L];
const int i_nextOffset = d_offsets[i_L+1];
const int i_nbElts = i_nextOffset - i_offset;
for (int e_i = 0; e_i < i_nbElts; ++e_i)
{
const int i_E = d_indices[i_offset+e_i];
i_elts[e_i] = i_E/elt_dofs;
}
for (int j = 0; j < elt_dofs; j++)
{
const int j_E = e*elt_dofs + j;
const int j_L = d_gatherMap[j_E];
const int j_offset = d_offsets[j_L];
const int j_nextOffset = d_offsets[j_L+1];
const int j_nbElts = j_nextOffset - j_offset;
if (i_nbElts == 1 || j_nbElts == 1) // no assembly required
{
const int nnz = AtomicAdd(I[i_L],1);
J[nnz] = j_L;
Data[nnz] = 0.0;
}
else // assembly required
{
int j_elts[Max];
for (int e_j = 0; e_j < j_nbElts; ++e_j)
{
const int j_E = d_indices[j_offset+e_j];
const int elt = j_E/elt_dofs;
j_elts[e_j] = elt;
}
const int min_e = GetMinElt(i_elts, i_nbElts, j_elts, j_nbElts);
if (e == min_e) // add the nnz only once
{
const int nnz = AtomicAdd(I[i_L],1);
J[nnz] = j_L;
Data[nnz] = 0.0;
}
}
}
}
});
// We need to shift again the entries of I, we do it on CPU as it is very
// sequential.
auto h_I = mat.HostReadWriteI();
const int size = vd*all_dofs;
for (int i = 0; i < size; i++) { h_I[size-i] = h_I[size-(i+1)]; }
h_I[0] = 0;
}
LORRestriction::~LORRestriction()
{
delete fec_lo;
}
} // namespace mfem
+51
View File
@@ -69,6 +69,10 @@ protected:
BilinearForm *a;
OperatorHandle A;
mutable Array<int> perm;
bool supports_batched_assembly;
/// The LOR element restriction operator.
mutable class LORRestriction *R_lor;
/// Constructs the local DOF (ldof) permutation. In parallel this is used as
/// an intermediate step in computing the DOF permutation (see
@@ -120,6 +124,8 @@ public:
/// Returns the low-order refined finite element space.
FiniteElementSpace &GetFESpace() const { return *fes; }
/// Returns the low-order restriction.
const LORRestriction *GetLORRestriction() const;
~LORBase();
};
@@ -259,6 +265,51 @@ public:
~LORSolver() { if (own_lor) { delete lor; } }
};
/// Create a low-order refined version of a Restriction.
/// Only used here for the FillI and FillJAndZeroData methods.
class LORRestriction
{
const FiniteElementSpace &fes_ho;
FiniteElementCollection *fec_lo;
const Geometry::Type geom;
const int ne_ref;
const int ne;
const int vdim;
const bool byvdim;
const int ndofs;
const int dof;
Array<int> offsets;
Array<int> indices;
Array<int> gatherMap;
Array<int> dof_glob2loc;
Array<int> dof_glob2loc_offsets;
Array<int> el_dof_lex;
protected:
static int GetNRefinedElements(const FiniteElementSpace &fes);
static FiniteElementCollection *GetLowOrderFEC(const FiniteElementSpace &fes);
public:
LORRestriction(const FiniteElementSpace &fes_ho);
int FillI(SparseMatrix &mat) const;
void FillJAndZeroData(SparseMatrix &mat) const;
const Array<int> &GatherMap() const { return el_dof_lex; }
const Array<int> &Indices() const { return dof_glob2loc; }
const Array<int> &Offsets() const { return dof_glob2loc_offsets; }
~LORRestriction();
// Device lambda cannot have private or protected access
public:
void SetupLocalToElement();
void SetupGlobalToLocal();
};
} // namespace mfem
#endif
+412
View File
@@ -0,0 +1,412 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "lor.hpp"
#include "lor_assembly.hpp"
#include "../linalg/dtensor.hpp"
#include "../general/forall.hpp"
#define MFEM_DEBUG_COLOR 226
#include "../general/debug.hpp"
#define MFEM_NVTX_COLOR DarkOrchid
#include "../general/nvtx.hpp"
#include <thrust/execution_policy.h>
#include <thrust/scan.h>
namespace mfem
{
// Defined in lor_assembly_ker.cpp
template <int order, bool use_smem = true>
void Assemble3DBatchedLOR(const Array<int> &dof_glob2loc,
const Array<int> &dof_glob2loc_offsets,
const Array<int> &el_dof_lex,
Mesh &mesh_ho,
SparseMatrix &A_mat);
static void AssembleBatchedLORWithoutBC(LORBase &lor_disc,
BilinearForm &form_lor,
FiniteElementSpace &fes_ho,
OperatorHandle &Ah)
{
MFEM_NVTX;
Mesh &mesh_ho = *fes_ho.GetMesh();
const int dim = mesh_ho.Dimension();
const int order = fes_ho.GetMaxElementOrder();
dbg("dim:%d order:%d",dim,order);
const bool has_to_init = Ah.Ptr() == nullptr;
dbg("has_to_init: %s", has_to_init?"yes":"no");
SparseMatrix *A = has_to_init ? nullptr : Ah.As<SparseMatrix>();
dbg("GetLORRestriction");
const LORRestriction *R = lor_disc.GetLORRestriction();
MFEM_VERIFY(R,"LOR Restriction error!");
if (has_to_init)
{
MFEM_VERIFY(UsesTensorBasis(fes_ho),
"Batched LOR assembly requires tensor basis");
if (Device::IsEnabled()||true)
{
dbg("Device::IsEnabled()");
#ifdef MFEM_USE_MPI
ParFiniteElementSpace *pfes_ho =
dynamic_cast<ParFiniteElementSpace*>(&fes_ho);
if (pfes_ho && pfes_ho->GetNRanks() > 1)
{
dbg("Device::IsEnabled() and multiple ranks!");
const int width = pfes_ho->GetVSize();
const int height = pfes_ho->GetVSize();
dbg("HxW: %dx%d",height,width);
A = new SparseMatrix(height, width, 0);
}
else
#endif
{
dbg("Device::IsEnabled() but one rank!");
const int width = fes_ho.GetVSize();
const int height = fes_ho.GetVSize();
dbg("HxW: %dx%d",height,width);
A = new SparseMatrix(height, width, 0);
}
A->GetMemoryI().New(A->Height()+1, A->GetMemoryI().GetMemoryType());
const int nnz = R->FillI(*A);
A->GetMemoryJ().New(nnz, A->GetMemoryJ().GetMemoryType());
A->GetMemoryData().New(nnz, A->GetMemoryData().GetMemoryType());
R->FillJAndZeroData(*A); // J, A = 0.0
}
else
{
MFEM_ABORT("");
dbg("NOT Device::IsEnabled()");
// the sparsity pattern is defined from the map: element->dof
const int ndofs = fes_ho.GetVSize();
dbg("ndofs:%d",ndofs);
const Table &elem_dof = form_lor.FESpace()->GetElementToDofTable();
Table dof_dof, dof_elem;
Transpose(elem_dof, dof_elem, ndofs);
mfem::Mult(dof_elem, elem_dof, dof_dof);
dof_dof.SortRows();
int *I = dof_dof.GetI();
int *J = dof_dof.GetJ();
double *data = Memory<double>(I[ndofs]);
A = new SparseMatrix(I,J,data,ndofs,ndofs,true,true,true);
dof_dof.LoseData();
*A = 0.0;
dbg("done");
}
}
void (*Kernel)(const Array<int> &dof_glob2loc,
const Array<int> &dof_glob2loc_offsets,
const Array<int> &el_dof_lex,
Mesh &mesh_ho,
SparseMatrix &A_mat) = nullptr;
if (dim == 2) { MFEM_ABORT("Unsuported!"); }
else if (dim == 3)
{
switch (order)
{
case 1: Kernel = Assemble3DBatchedLOR<1>; break;
case 2: Kernel = Assemble3DBatchedLOR<2>; break;
case 3: Kernel = Assemble3DBatchedLOR<3>; break;
case 4: Kernel = Assemble3DBatchedLOR<4>; break;
case 5: Kernel = Assemble3DBatchedLOR<5>; break;
case 6: Kernel = Assemble3DBatchedLOR<6,false>; break;/*
case 7: Kernel = Assemble3DBatchedLOR<7,false>; break;
case 8: Kernel = Assemble3DBatchedLOR<8,false>; break;
case 9: Kernel = Assemble3DBatchedLOR<9,false>; break;
case 10: Kernel = Assemble3DBatchedLOR<10,false>; break;
case 11: Kernel = Assemble3DBatchedLOR<11,false>; break;
case 12: Kernel = Assemble3DBatchedLOR<12,false>; break;
case 13: Kernel = Assemble3DBatchedLOR<13,false>; break;
case 14: Kernel = Assemble3DBatchedLOR<14,false>; break;
case 15: Kernel = Assemble3DBatchedLOR<15,false>; break;
case 16: Kernel = Assemble3DBatchedLOR<16,false>; break;*/
default: MFEM_ABORT("Kernel not ready!");
}
}
Kernel(R->Indices(),
R->Offsets(),
R->GatherMap(),
mesh_ho, *A);
A->Finalize();
if (has_to_init) { Ah.Reset(A); } // A now owns A_mat
}
void AssembleBatchedLOR(LORBase &lor_disc,
BilinearForm &form_lor,
FiniteElementSpace &fes_ho,
const Array<int> &ess_dofs,
OperatorHandle &Ah)
{
MFEM_NVTX;
AssembleBatchedLORWithoutBC(lor_disc, form_lor, fes_ho, Ah);
// Set essential dofs to 0.0
const int n_ess_dofs = ess_dofs.Size();
const auto ess_dofs_d = ess_dofs.Read();
const auto I = Ah.As<SparseMatrix>()->ReadI();
const auto J = Ah.As<SparseMatrix>()->ReadJ();
auto dA = Ah.As<SparseMatrix>()->ReadWriteData();
MFEM_FORALL(i, n_ess_dofs,
{
const int idof = ess_dofs_d[i];
for (int j=I[idof]; j<I[idof+1]; ++j)
{
const int jdof = J[j];
if (jdof != idof)
{
dA[j] = 0.0;
for (int k=I[jdof]; k<I[jdof+1]; ++k)
{
if (J[k] == idof)
{
dA[k] = 0.0;
break;
}
}
}
}
});
}
#ifdef MFEM_USE_MPI
void ParAssembleBatchedLOR(LORBase &lor_disc,
BilinearForm &form_lor,
FiniteElementSpace &fes_ho,
const Array<int> &ess_dofs,
OperatorHandle &Ah)
{
dbg();
MFEM_NVTX;
ParFiniteElementSpace *pfes_ho =
dynamic_cast<ParFiniteElementSpace*>(&fes_ho);
assert(pfes_ho);
OperatorHandle A_local(Operator::MFEM_SPARSEMAT);
AssembleBatchedLORWithoutBC(lor_disc, form_lor, fes_ho, A_local);
MFEM_VERIFY(A_local.As<SparseMatrix>()->Finalized(),
"the local matrix must be finalized");
NVTX("Parallel");
OperatorHandle dA(Operator::Hypre_ParCSR),
Ph(Operator::Hypre_ParCSR);
{
NVTX("MakeSquareBlockDiag");
dA.MakeSquareBlockDiag(pfes_ho->GetComm(),
pfes_ho->GlobalVSize(),
pfes_ho->GetDofOffsets(),
A_local.As<SparseMatrix>());
}
Ph.ConvertFrom(pfes_ho->Dof_TrueDof_Matrix());
{
NVTX("MakePtAP");
Ah.MakePtAP(dA, Ph);
}
{
dbg("EliminateRowsCols");
NVTX("EliminateRowsCols");
HypreParMatrix *A_mat = Ah.As<HypreParMatrix>();
hypre_ParCSRMatrix *A = *A_mat;
A_mat->HypreReadWrite();
hypre_CSRMatrix *diag = hypre_ParCSRMatrixDiag(A);
hypre_CSRMatrix *offd = hypre_ParCSRMatrixOffd(A);
HYPRE_Int diag_nrows = hypre_CSRMatrixNumRows(diag);
HYPRE_Int offd_ncols = hypre_CSRMatrixNumCols(offd);
dbg("diag_nrows:%d offd_ncols:%d", diag_nrows, offd_ncols);
const int n_ess_dofs = ess_dofs.Size();
const auto ess_dofs_d = ess_dofs.Read();
dbg("n_ess_dofs:%d", n_ess_dofs);
// Start communication to figure out which columns need to be eliminated in
// the off-diagonal block
hypre_ParCSRCommHandle *comm_handle;
HYPRE_Int *int_buf_data, *eliminate_row, *eliminate_col;
{
eliminate_row = hypre_CTAlloc(HYPRE_Int, diag_nrows, HYPRE_MEMORY_DEVICE);
eliminate_col = hypre_CTAlloc(HYPRE_Int, offd_ncols, HYPRE_MEMORY_DEVICE);
// Get the communication package for A, creating it if it does not
// already exist.
hypre_ParCSRCommPkg *comm_pkg = hypre_ParCSRMatrixCommPkg(A);
if (!comm_pkg)
{
hypre_MatvecCommPkgCreate(A);
comm_pkg = hypre_ParCSRMatrixCommPkg(A);
}
MFEM_FORALL(i, diag_nrows,
{
eliminate_row[i] = 0;
});
MFEM_FORALL(i, n_ess_dofs,
{
eliminate_row[ess_dofs_d[i]] = 1;
});
// Use a matvec communication pattern to find (in eliminate_col) which of
// the local offd columns are to be eliminated
HYPRE_Int num_sends = hypre_ParCSRCommPkgNumSends(comm_pkg);
HYPRE_Int int_buf_sz = hypre_ParCSRCommPkgSendMapStart(comm_pkg, num_sends);
dbg("num_sends:%d", num_sends);
int_buf_data = hypre_CTAlloc(HYPRE_Int, int_buf_sz, HYPRE_MEMORY_DEVICE);
hypre_ParCSRCommPkgCopySendMapElmtsToDevice(comm_pkg);
HYPRE_Int *send_map_elmts = hypre_ParCSRCommPkgDeviceSendMapElmts(comm_pkg);
MFEM_FORALL(i, int_buf_sz,
{
int k = send_map_elmts[i];
int_buf_data[i] = eliminate_row[k];
});
// Try to use device-aware MPI for the communication
comm_handle = hypre_ParCSRCommHandleCreate_v2(
11, comm_pkg, HYPRE_MEMORY_DEVICE, int_buf_data,
HYPRE_MEMORY_DEVICE, eliminate_col);
}
// Eliminate rows and columns in the diagonal block
{
dbg("Eliminate rows and columns in the diagonal block");
const auto I = diag->i;
const auto J = diag->j;
auto data = diag->data;
MFEM_FORALL(i, n_ess_dofs,
{
const int idof = ess_dofs_d[i];
for (int j=I[idof]; j<I[idof+1]; ++j)
{
const int jdof = J[j];
if (jdof != idof)
{
data[j] = 0.0;
for (int k=I[jdof]; k<I[jdof+1]; ++k)
{
if (J[k] == idof)
{
data[k] = 0.0;
break;
}
}
}
}
});
}
// Eliminate rows in the off-diagonal block
{
dbg("Eliminate rows in the off-diagonal block");
const auto I = offd->i;
auto data = offd->data;
MFEM_FORALL(i, n_ess_dofs,
{
const int idof = ess_dofs_d[i];
for (int j=I[idof]; j<I[idof+1]; ++j)
{
data[j] = 0.0;
}
});
}
// Wait for MPI communication to finish
Array<HYPRE_Int> cols_to_eliminate;
{
dbg("Wait for MPI communication to finish");
hypre_ParCSRCommHandleDestroy(comm_handle);
// Convert a "column marker" array to a "column index" array.
// First we need to know how many columns are marked, and do a partial
// sum to figure out which index they correspond to.
HYPRE_Int *col_idx = hypre_CTAlloc(HYPRE_Int, offd_ncols, HYPRE_MEMORY_DEVICE);
thrust::exclusive_scan(
thrust::device, eliminate_col, eliminate_col + offd_ncols, col_idx
);
// Because we do an exclusive scan above, the last entry is missing
// from the partial sum. To compute the total sum, get last entry of
// both arrays and add them.
HYPRE_Int partial_sum, last_element;
hypre_TMemcpy(&partial_sum, col_idx + offd_ncols - 1, HYPRE_Int, 1, HYPRE_MEMORY_HOST, HYPRE_MEMORY_DEVICE);
hypre_TMemcpy(&last_element, eliminate_col + offd_ncols - 1, HYPRE_Int, 1, HYPRE_MEMORY_HOST, HYPRE_MEMORY_DEVICE);
HYPRE_Int ncols_to_eliminate = partial_sum + last_element;
// Perform the conversion to "column index" array.
cols_to_eliminate.SetSize(ncols_to_eliminate);
HYPRE_Int *cols = cols_to_eliminate.Write();
MFEM_FORALL(i, offd_ncols,
{
if (eliminate_col[i])
{
cols[col_idx[i]] = i;
}
});
hypre_TFree(int_buf_data, HYPRE_MEMORY_DEVICE);
hypre_TFree(eliminate_row, HYPRE_MEMORY_DEVICE);
hypre_TFree(eliminate_col, HYPRE_MEMORY_DEVICE);
hypre_TFree(col_idx, HYPRE_MEMORY_DEVICE);
}
// Eliminate columns in the off-diagonal block
{
dbg("Eliminate columns in the off-diagonal block");
const int ncols_to_eliminate = cols_to_eliminate.Size();
const int nrows_offd = hypre_CSRMatrixNumRows(offd);
const auto cols = cols_to_eliminate.Read();
const auto I = offd->i;
const auto J = offd->j;
auto data = offd->data;
dbg("ncols_to_eliminate:%d nrows_offd:%d", ncols_to_eliminate, nrows_offd);
// Note: could also try a different strategy, looping over nnz in the
// matrix and then doing a binary search in ncols_to_eliminate to see if
// the column should be eliminated.
MFEM_FORALL(idx, ncols_to_eliminate,
{
const int j = cols[idx];
for (int i=0; i<nrows_offd; ++i)
{
for (int jj=I[i]; jj<I[i+1]; ++jj)
{
if (J[jj] == j)
{
data[jj] = 0.0;
break;
}
}
}
});
}
}
}
#endif // MFEM_USE_MPI
} // namespace mfem
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_LOR_ASSEMBLY
#define MFEM_LOR_ASSEMBLY
#include "lor.hpp"
#include "bilinearform.hpp"
#include "pbilinearform.hpp"
namespace mfem
{
void AssembleBatchedLOR(LORBase &lor_disc,
BilinearForm &form_lo,
FiniteElementSpace &fes_ho,
const Array<int> &ess_dofs,
OperatorHandle &A);
#ifdef MFEM_USE_MPI
void ParAssembleBatchedLOR(LORBase &lor_disc,
BilinearForm &form_lo,
FiniteElementSpace &fes_ho,
const Array<int> &ess_dofs,
OperatorHandle &A);
#endif // MFEM_USE_MPI
} // namespace mfem
#endif
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// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "../general/forall.hpp"
#define MFEM_DEBUG_COLOR 187
#include "../general/debug.hpp"
#define MFEM_NVTX_COLOR SlateBlue
#include "../general/nvtx.hpp"
namespace mfem
{
template<int D1D, int Q1D>
void NodalInterpolation3D(const int NE,
const Vector& localL, Vector& localH,
const Array<double>& B);
template <int order, bool USE_SMEM = true>
void Assemble3DBatchedLOR(const Array<int> &dof_glob2loc_,
const Array<int> &dof_glob2loc_offsets_,
const Array<int> &el_dof_lex_,
Mesh &mesh_ho,
SparseMatrix &A_mat)
{
const int nel_ho = mesh_ho.GetNE();
static constexpr int nv = 8;
static constexpr int dim = 3;
static constexpr int ddm2 = (dim*(dim+1))/2;
static constexpr int nd1d = order + 1;
static constexpr int ndof_per_el = nd1d*nd1d*nd1d;
static constexpr int nnz_per_row = 27;
static constexpr int nnz_per_el = nnz_per_row * ndof_per_el;
static constexpr int sz_grad_A = 3*3*2*2*2*2;
static constexpr int sz_grad_B = sz_grad_A*2;
static constexpr int sz_local_mat = 8*8;
static constexpr int GRID = USE_SMEM ? 0 : 128;
double *GM = nullptr;
static Vector *d_buffer = nullptr;
if (!USE_SMEM)
{
if (!d_buffer)
{
d_buffer = new Vector();
d_buffer->UseDevice(true);
}
d_buffer->SetSize(nnz_per_el*GRID);
GM = d_buffer->Write();
}
const auto el_dof_lex = Reshape(el_dof_lex_.Read(), ndof_per_el, nel_ho);
const auto dof_glob2loc = dof_glob2loc_.Read();
const auto K = dof_glob2loc_offsets_.Read();
const auto I = A_mat.ReadI();
const auto J = A_mat.ReadJ();
auto A = A_mat.ReadWriteData();
const GridFunction *nodal_gf = mesh_ho.GetNodes();
const FiniteElementSpace *nodal_fes = nodal_gf->FESpace();
const Operator *nodal_restriction = nodal_fes->GetElementRestriction(
ElementDofOrdering::LEXICOGRAPHIC);
const int nodal_nd1d = nodal_fes->GetMaxElementOrder() + 1;
IntegrationRules irs(0, Quadrature1D::GaussLobatto);
const IntegrationRule &ir = irs.Get(Geometry::Type::CUBE, 2*nd1d - 3);
MFEM_VERIFY(ir.Size() == ndof_per_el, "");
// Get the map from mesh nodes to LOR vertices
const DofToQuad& maps =
nodal_fes->GetFE(0)->GetDofToQuad(ir, DofToQuad::TENSOR);
// Map from nodal E-vector to L-vector
Vector nodes_loc(nodal_restriction->Height());
nodes_loc.UseDevice(true);
nodal_restriction->Mult(*nodal_gf, nodes_loc);
// Get nodal points at the LOR vertices
Vector X_loc(dim*ndof_per_el*nel_ho);
X_loc.UseDevice(true);
// Get the LOR vertex coordinates
MFEM_VERIFY(nd1d==order+1, "nd1d!=order+1");
switch (nodal_nd1d)
{
case 2:
{
NodalInterpolation3D<2,nd1d>(nel_ho, nodes_loc, X_loc, maps.B);
break;
}
case 4:
{
NodalInterpolation3D<4,nd1d>(nel_ho, nodes_loc, X_loc, maps.B);
break;
}
case 6:
{
NodalInterpolation3D<6,nd1d>(nel_ho, nodes_loc, X_loc, maps.B);
break;
}
default: MFEM_ABORT("Unsuported mesh order!");
}
auto X = X_loc.Read();
// Last GRID dimension is lowered to avoid too many resources
MFEM_FORALL_3D_GRID(iel_ho, nel_ho, order, order, USE_SMEM?order:1, GRID,
{
const int bid = MFEM_BLOCK_ID(x);
MFEM_SHARED double smem[USE_SMEM ? nnz_per_el : 1];
double *V_ = USE_SMEM ? smem : GM + nnz_per_el*bid;
DeviceTensor<4> V(V_, nnz_per_row, nd1d, nd1d, nd1d);
// Assemble a sparse matrix over the macro-element by looping over each
// subelement.
// V(j,i) stores the jth nonzero in the ith row of the sparse matrix.
MFEM_FOREACH_THREAD(iz,z,nd1d)
{
MFEM_FOREACH_THREAD(iy,y,nd1d)
{
MFEM_FOREACH_THREAD(ix,x,nd1d)
{
//MFEM_UNROLL(27)
for (int j=0; j<nnz_per_row; ++j)
{
V(j,ix,iy,iz) = 0.0;
}
}
}
}
MFEM_SYNC_THREAD;
// Compute geometric factors at quadrature points
MFEM_FOREACH_THREAD(kz,z,order)
{
MFEM_FOREACH_THREAD(ky,y,order)
{
MFEM_FOREACH_THREAD(kx,x,order)
{
double Q_[ddm2*nv];
double grad_A_[sz_grad_A];
double grad_B_[sz_grad_B];
double local_mat_[sz_local_mat];
DeviceTensor<4> Q(Q_, ddm2,2,2,2);
DeviceTensor<2> local_mat(local_mat_, 8, 8);
DeviceTensor<6> grad_A(grad_A_, 3, 3, 2, 2, 2, 2);
DeviceTensor<7> grad_B(grad_B_, 3, 3, 2, 2, 2, 2, 2);
// local_mat is the local (dense) stiffness matrix
for (int i=0; i<sz_local_mat; ++i) { local_mat[i] = 0.0; }
// Intermediate quantities
// (see e.g. Mora and Demkowicz for notation).
for (int i=0; i<sz_grad_A; ++i) { grad_A[i] = 0.0; }
for (int i=0; i<sz_grad_B; ++i) { grad_B[i] = 0.0; }
const int v0 = kx + nd1d*(ky + nd1d*kz);
const int v1 = kx + 1 + nd1d*(ky + nd1d*kz);
const int v2 = kx + 1 + nd1d*(ky + 1 + nd1d*kz);
const int v3 = kx + nd1d*(ky + 1 + nd1d*kz);
const int v4 = kx + nd1d*(ky + nd1d*(kz + 1));
const int v5 = kx + 1 + nd1d*(ky + nd1d*(kz + 1));
const int v6 = kx + 1 + nd1d*(ky + 1 + nd1d*(kz + 1));
const int v7 = kx + nd1d*(ky + 1 + nd1d*(kz + 1));
const int e0 = dim*(v0 + ndof_per_el*iel_ho);
const int e1 = dim*(v1 + ndof_per_el*iel_ho);
const int e2 = dim*(v2 + ndof_per_el*iel_ho);
const int e3 = dim*(v3 + ndof_per_el*iel_ho);
const int e4 = dim*(v4 + ndof_per_el*iel_ho);
const int e5 = dim*(v5 + ndof_per_el*iel_ho);
const int e6 = dim*(v6 + ndof_per_el*iel_ho);
const int e7 = dim*(v7 + ndof_per_el*iel_ho);
const double v0x = X[e0 + 0];
const double v0y = X[e0 + 1];
const double v0z = X[e0 + 2];
const double v1x = X[e1 + 0];
const double v1y = X[e1 + 1];
const double v1z = X[e1 + 2];
const double v2x = X[e2 + 0];
const double v2y = X[e2 + 1];
const double v2z = X[e2 + 2];
const double v3x = X[e3 + 0];
const double v3y = X[e3 + 1];
const double v3z = X[e3 + 2];
const double v4x = X[e4 + 0];
const double v4y = X[e4 + 1];
const double v4z = X[e4 + 2];
const double v5x = X[e5 + 0];
const double v5y = X[e5 + 1];
const double v5z = X[e5 + 2];
const double v6x = X[e6 + 0];
const double v6y = X[e6 + 1];
const double v6z = X[e6 + 2];
const double v7x = X[e7 + 0];
const double v7y = X[e7 + 1];
const double v7z = X[e7 + 2];
//MFEM_UNROLL(2)
for (int iqz=0; iqz<2; ++iqz)
{
//MFEM_UNROLL(2)
for (int iqy=0; iqy<2; ++iqy)
{
//MFEM_UNROLL(2)
for (int iqx=0; iqx<2; ++iqx)
{
const double x = iqx;
const double y = iqy;
const double z = iqz;
const double w = 1.0/8.0;
// c: (1-x)(1-y)(1-z)v0[c] + x (1-y)(1-z)v1[c] + x y (1-z)v2[c] + (1-x) y (1-z)v3[c]
// + (1-x)(1-y) z v4[c] + x (1-y) z v5[c] + x y z v6[c] + (1-x) y z v7[c]
const double J11 = -(1-y)*(1-z)*v0x
+ (1-y)*(1-z)*v1x + y*(1-z)*v2x - y*(1-z)*v3x
- (1-y)*z*v4x + (1-y)*z*v5x + y*z*v6x - y*z*v7x;
const double J12 = -(1-x)*(1-z)*v0x
- x*(1-z)*v1x + x*(1-z)*v2x + (1-x)*(1-z)*v3x
- (1-x)*z*v4x - x*z*v5x + x*z*v6x + (1-x)*z*v7x;
const double J13 = -(1-x)*(1-y)*v0x - x*(1-y)*v1x
- x*y*v2x - (1-x)*y*v3x + (1-x)*(1-y)*v4x
+ x*(1-y)*v5x + x*y*v6x + (1-x)*y*v7x;
const double J21 = -(1-y)*(1-z)*v0y + (1-y)*(1-z)*v1y
+ y*(1-z)*v2y - y*(1-z)*v3y - (1-y)*z*v4y
+ (1-y)*z*v5y + y*z*v6y - y*z*v7y;
const double J22 = -(1-x)*(1-z)*v0y - x*(1-z)*v1y
+ x*(1-z)*v2y + (1-x)*(1-z)*v3y- (1-x)*z*v4y -
x*z*v5y + x*z*v6y + (1-x)*z*v7y;
const double J23 = -(1-x)*(1-y)*v0y - x*(1-y)*v1y
- x*y*v2y - (1-x)*y*v3y + (1-x)*(1-y)*v4y
+ x*(1-y)*v5y + x*y*v6y + (1-x)*y*v7y;
const double J31 = -(1-y)*(1-z)*v0z + (1-y)*(1-z)*v1z
+ y*(1-z)*v2z - y*(1-z)*v3z- (1-y)*z*v4z +
(1-y)*z*v5z + y*z*v6z - y*z*v7z;
const double J32 = -(1-x)*(1-z)*v0z - x*(1-z)*v1z
+ x*(1-z)*v2z + (1-x)*(1-z)*v3z - (1-x)*z*v4z
- x*z*v5z + x*z*v6z + (1-x)*z*v7z;
const double J33 = -(1-x)*(1-y)*v0z - x*(1-y)*v1z
- x*y*v2z - (1-x)*y*v3z + (1-x)*(1-y)*v4z
+ x*(1-y)*v5z + x*y*v6z + (1-x)*y*v7z;
const double detJ = J11 * (J22 * J33 - J32 * J23) -
J21 * (J12 * J33 - J32 * J13) +
J31 * (J12 * J23 - J22 * J13);
const double w_detJ = w/detJ;
// adj(J)
const double A11 = (J22 * J33) - (J23 * J32);
const double A12 = (J32 * J13) - (J12 * J33);
const double A13 = (J12 * J23) - (J22 * J13);
const double A21 = (J31 * J23) - (J21 * J33);
const double A22 = (J11 * J33) - (J13 * J31);
const double A23 = (J21 * J13) - (J11 * J23);
const double A31 = (J21 * J32) - (J31 * J22);
const double A32 = (J31 * J12) - (J11 * J32);
const double A33 = (J11 * J22) - (J12 * J21);
Q(0,iqz,iqy,iqx) = w_detJ * (A11*A11 + A12*A12 + A13*A13); // 1,1
Q(1,iqz,iqy,iqx) = w_detJ * (A11*A21 + A12*A22 + A13*A23); // 2,1
Q(2,iqz,iqy,iqx) = w_detJ * (A11*A31 + A12*A32 + A13*A33); // 3,1
Q(3,iqz,iqy,iqx) = w_detJ * (A21*A21 + A22*A22 + A23*A23); // 2,2
Q(4,iqz,iqy,iqx) = w_detJ * (A21*A31 + A22*A32 + A23*A33); // 3,2
Q(5,iqz,iqy,iqx) = w_detJ * (A31*A31 + A32*A32 + A33*A33); // 3,3
}
}
}
//MFEM_UNROLL(2)
for (int iqx=0; iqx<2; ++iqx)
{
//MFEM_UNROLL(2)
for (int jz=0; jz<2; ++jz)
{
// Note loop starts at iz=jz here, taking advantage of
// symmetries.
//MFEM_UNROLL(2)
for (int iz=jz; iz<2; ++iz)
{
//MFEM_UNROLL(2)
for (int iqy=0; iqy<2; ++iqy)
{
//MFEM_UNROLL(2)
for (int iqz=0; iqz<2; ++iqz)
{
const double biz = (iz == iqz) ? 1.0 : 0.0;
const double giz = (iz == 0) ? -1.0 : 1.0;
const double bjz = (jz == iqz) ? 1.0 : 0.0;
const double gjz = (jz == 0) ? -1.0 : 1.0;
const double J11 = Q(0,iqz,iqy,iqx);
const double J21 = Q(1,iqz,iqy,iqx);
const double J31 = Q(2,iqz,iqy,iqx);
const double J12 = J21;
const double J22 = Q(3,iqz,iqy,iqx);
const double J32 = Q(4,iqz,iqy,iqx);
const double J13 = J31;
const double J23 = J32;
const double J33 = Q(5,iqz,iqy,iqx);
grad_A(0,0,iqy,iz,jz,iqx) += J11*biz*bjz;
grad_A(1,0,iqy,iz,jz,iqx) += J21*biz*bjz;
grad_A(2,0,iqy,iz,jz,iqx) += J31*giz*bjz;
grad_A(0,1,iqy,iz,jz,iqx) += J12*biz*bjz;
grad_A(1,1,iqy,iz,jz,iqx) += J22*biz*bjz;
grad_A(2,1,iqy,iz,jz,iqx) += J32*giz*bjz;
grad_A(0,2,iqy,iz,jz,iqx) += J13*biz*gjz;
grad_A(1,2,iqy,iz,jz,iqx) += J23*biz*gjz;
grad_A(2,2,iqy,iz,jz,iqx) += J33*giz*gjz;
}
//MFEM_UNROLL(2)
for (int jy=0; jy<2; ++jy)
{
//MFEM_UNROLL(2)
for (int iy=0; iy<2; ++iy)
{
const double biy = (iy == iqy) ? 1.0 : 0.0;
const double giy = (iy == 0) ? -1.0 : 1.0;
const double bjy = (jy == iqy) ? 1.0 : 0.0;
const double gjy = (jy == 0) ? -1.0 : 1.0;
grad_B(0,0,iy,jy,iz,jz,iqx) += biy*bjy*grad_A(0,0,iqy,iz,jz,iqx);
grad_B(1,0,iy,jy,iz,jz,iqx) += giy*bjy*grad_A(1,0,iqy,iz,jz,iqx);
grad_B(2,0,iy,jy,iz,jz,iqx) += biy*bjy*grad_A(2,0,iqy,iz,jz,iqx);
grad_B(0,1,iy,jy,iz,jz,iqx) += biy*gjy*grad_A(0,1,iqy,iz,jz,iqx);
grad_B(1,1,iy,jy,iz,jz,iqx) += giy*gjy*grad_A(1,1,iqy,iz,jz,iqx);
grad_B(2,1,iy,jy,iz,jz,iqx) += biy*gjy*grad_A(2,1,iqy,iz,jz,iqx);
grad_B(0,2,iy,jy,iz,jz,iqx) += biy*bjy*grad_A(0,2,iqy,iz,jz,iqx);
grad_B(1,2,iy,jy,iz,jz,iqx) += giy*bjy*grad_A(1,2,iqy,iz,jz,iqx);
grad_B(2,2,iy,jy,iz,jz,iqx) += biy*bjy*grad_A(2,2,iqy,iz,jz,iqx);
}
}
}
//MFEM_UNROLL(2)
for (int jy=0; jy<2; ++jy)
{
//MFEM_UNROLL(2)
for (int jx=0; jx<2; ++jx)
{
//MFEM_UNROLL(2)
for (int iy=0; iy<2; ++iy)
{
//MFEM_UNROLL(2)
for (int ix=0; ix<2; ++ix)
{
const double bix = (ix == iqx) ? 1.0 : 0.0;
const double gix = (ix == 0) ? -1.0 : 1.0;
const double bjx = (jx == iqx) ? 1.0 : 0.0;
const double gjx = (jx == 0) ? -1.0 : 1.0;
int ii_loc = ix + 2*iy + 4*iz;
int jj_loc = jx + 2*jy + 4*jz;
// Only store the lower-triangular part of
// the matrix (by symmetry).
if (jj_loc > ii_loc) { continue; }
double val = 0.0;
val += gix*gjx*grad_B(0,0,iy,jy,iz,jz,iqx);
val += bix*gjx*grad_B(1,0,iy,jy,iz,jz,iqx);
val += bix*gjx*grad_B(2,0,iy,jy,iz,jz,iqx);
val += gix*bjx*grad_B(0,1,iy,jy,iz,jz,iqx);
val += bix*bjx*grad_B(1,1,iy,jy,iz,jz,iqx);
val += bix*bjx*grad_B(2,1,iy,jy,iz,jz,iqx);
val += gix*bjx*grad_B(0,2,iy,jy,iz,jz,iqx);
val += bix*bjx*grad_B(2,2,iy,jy,iz,jz,iqx);
val += bix*bjx*grad_B(1,2,iy,jy,iz,jz,iqx);
local_mat(ii_loc, jj_loc) += val;
}
}
}
}
}
}
}
// Assemble the local matrix into the macro-element sparse matrix
// in a format similar to coordinate format. The (I,J) arrays
// are implicit (not stored explicitly).
//MFEM_UNROLL(8)
for (int ii_loc=0; ii_loc<8; ++ii_loc)
{
const int ix = ii_loc%2;
const int iy = (ii_loc/2)%2;
const int iz = ii_loc/2/2;
for (int jj_loc=0; jj_loc<8; ++jj_loc)
{
const int jx = jj_loc%2;
const int jy = (jj_loc/2)%2;
const int jz = jj_loc/2/2;
const int jj_off = (jx-ix+1) + 3*(jy-iy+1) + 9*(jz-iz+1);
if (jj_loc <= ii_loc)
{
AtomicAdd(V(jj_off, ix+kx, iy+ky, iz+kz), local_mat(ii_loc, jj_loc));
}
else
{
AtomicAdd(V(jj_off, ix+kx, iy+ky, iz+kz), local_mat(jj_loc, ii_loc));
}
}
}
}
}
}
MFEM_SYNC_THREAD;
// Place the macro-element sparse matrix into the global sparse matrix.
MFEM_FOREACH_THREAD(iz,z,nd1d)
{
MFEM_FOREACH_THREAD(iy,y,nd1d)
{
MFEM_FOREACH_THREAD(ix,x,nd1d)
{
double col_ptr[nnz_per_row]; // 27
const int ii_el = ix + nd1d*(iy + nd1d*iz);
const int ii = el_dof_lex(ii_el, iel_ho);
// Set column pointer to avoid searching in the row
for (int j = I[ii], end = I[ii+1]; j < end; j++)
{
const int jj = J[j];
int jj_el = -1;
for (int k = K[jj], k_end = K[jj+1]; k < k_end; k += 2)
{
if (dof_glob2loc[k] == iel_ho)
{
jj_el = dof_glob2loc[k+1];
break;
}
}
if (jj_el < 0) { continue; }
const int jx = jj_el%nd1d;
const int jy = (jj_el/nd1d)%nd1d;
const int jz = jj_el/nd1d/nd1d;
const int jj_off = (jx-ix+1) + 3*(jy-iy+1) + 9*(jz-iz+1);
col_ptr[jj_off] = j;
}
const int jx_begin = (ix > 0) ? ix - 1 : 0;
const int jx_end = (ix < order) ? ix + 1 : order;
const int jy_begin = (iy > 0) ? iy - 1 : 0;
const int jy_end = (iy < order) ? iy + 1 : order;
const int jz_begin = (iz > 0) ? iz - 1 : 0;
const int jz_end = (iz < order) ? iz + 1 : order;
for (int jz=jz_begin; jz<=jz_end; ++jz)
{
for (int jy=jy_begin; jy<=jy_end; ++jy)
{
for (int jx=jx_begin; jx<=jx_end; ++jx)
{
const int jj_off = (jx-ix+1) + 3*(jy-iy+1) + 9*(jz-iz+1);
const double Vji = V(jj_off, ix, iy, iz);
const int col_ptr_jj = col_ptr[jj_off];
if ((ix == 0 && jx == 0) || (ix == order && jx == order) ||
(iy == 0 && jy == 0) || (iy == order && jy == order) ||
(iz == 0 && jz == 0) || (iz == order && jz == order))
{
AtomicAdd(A[col_ptr_jj], Vji);
}
else
{
A[col_ptr_jj] += Vji;
}
}
}
}
}
}
}
});
}
#define LOR_KERNEL_INSTANCE(order,use_smem) \
template void Assemble3DBatchedLOR<order,use_smem>\
(const Array<int> &,const Array<int> &, const Array<int> &,\
Mesh &, SparseMatrix &)
LOR_KERNEL_INSTANCE(1,true);
LOR_KERNEL_INSTANCE(2,true);
LOR_KERNEL_INSTANCE(3,true);
LOR_KERNEL_INSTANCE(4,true);
LOR_KERNEL_INSTANCE(5,true);
LOR_KERNEL_INSTANCE(6,false);/*
LOR_KERNEL_INSTANCE(7,false);
LOR_KERNEL_INSTANCE(8,false);
LOR_KERNEL_INSTANCE(9,false);
LOR_KERNEL_INSTANCE(10,false);
LOR_KERNEL_INSTANCE(11,false);
LOR_KERNEL_INSTANCE(12,false);
LOR_KERNEL_INSTANCE(13,false);
LOR_KERNEL_INSTANCE(14,false);
LOR_KERNEL_INSTANCE(15,false);
LOR_KERNEL_INSTANCE(16,false);*/
} // namespace mfem
+128
View File
@@ -0,0 +1,128 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "../general/forall.hpp"
#define MFEM_DEBUG_COLOR 227
#include "../general/debug.hpp"
#define MFEM_NVTX_COLOR MediumVioletRed
#include "../general/nvtx.hpp"
namespace mfem
{
#define M1D 8
template<int D1D, int Q1D>
void NodalInterpolation3D(const int NE,
const Vector& localL, Vector& localH,
const Array<double> &B)
{
MFEM_NVTX;
dbg("D1D:%d Q1D:%d", D1D, Q1D);
static constexpr int VDIM = 3;
const auto x_ = Reshape(localL.Read(), D1D, D1D, D1D, VDIM, NE);
const auto B_ = Reshape(B.Read(), Q1D, D1D);
auto y_ = Reshape(localH.Write(), VDIM, Q1D, Q1D, Q1D, NE);
{
NVTX("localH = 0.0");
localH = 0.0;
}
{
NVTX("NodalInterpolation3D Kernel");
MFEM_FORALL(e, NE,
{
for (int vd = 0; vd < VDIM; ++vd)
{
for (int dz = 0; dz < D1D; ++dz)
{
double sol_xy[M1D][M1D];
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] = 0.0;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
double sol_x[M1D];
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] = 0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const double s = x_(dx, dy, dz, vd, e);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] += B_(qx, dx) * s;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
const double wy = B_(qy, dy);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] += wy * sol_x[qx];
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
const double wz = B_(qz, dz);
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
y_(vd, qx, qy, qz, e) += wz * sol_xy[qy][qx];
}
}
}
}
}
});
}
}
#define NODAL_INTERP_3D_INSTANCE(D1D,Q1D) \
template void NodalInterpolation3D<D1D,Q1D>\
(const int, const Vector&, Vector&,const Array<double>&)
NODAL_INTERP_3D_INSTANCE(2,2);
NODAL_INTERP_3D_INSTANCE(2,3);
NODAL_INTERP_3D_INSTANCE(2,4);
NODAL_INTERP_3D_INSTANCE(2,5);
NODAL_INTERP_3D_INSTANCE(2,6);
NODAL_INTERP_3D_INSTANCE(2,7);
NODAL_INTERP_3D_INSTANCE(4,2);
NODAL_INTERP_3D_INSTANCE(4,3);
NODAL_INTERP_3D_INSTANCE(4,4);
NODAL_INTERP_3D_INSTANCE(4,5);
NODAL_INTERP_3D_INSTANCE(4,6);
NODAL_INTERP_3D_INSTANCE(4,7);
NODAL_INTERP_3D_INSTANCE(6,2);
NODAL_INTERP_3D_INSTANCE(6,3);
NODAL_INTERP_3D_INSTANCE(6,4);
NODAL_INTERP_3D_INSTANCE(6,5);
NODAL_INTERP_3D_INSTANCE(6,6);
NODAL_INTERP_3D_INSTANCE(6,7);
} // namespace mfem
+16 -3
View File
@@ -21,6 +21,14 @@
namespace mfem
{
// E or L I/O vectors
enum class ActionType
{
E2E, ///< E => E kernels
L2E, ///< L => E kernels
L2L ///< L => L kernels
};
/** @brief This class is used to express the local action of a general nonlinear
finite element operator. In addition it may provide the capability to
assemble the local gradient operator and to compute the local energy. */
@@ -32,7 +40,9 @@ protected:
// CEED extension
ceed::Operator* ceedOp;
MemoryType pa_mt = MemoryType::DEFAULT;
MemoryType memory_type = MemoryType::DEFAULT;
ActionType action_type = ActionType::E2E;
NonlinearFormIntegrator(const IntegrationRule *ir = NULL)
: IntRule(ir), ceedOp(NULL) { }
@@ -46,8 +56,11 @@ public:
void SetIntegrationRule(const IntegrationRule &ir) { SetIntRule(&ir); }
/// Set the memory type used for GeometricFactors and other large allocations
/// in PA extensions.
void SetPAMemoryType(MemoryType mt) { pa_mt = mt; }
void SetMemoryType(MemoryType mt) { memory_type = mt; }
MFEM_DEPRECATED void SetPAMemoryType(MemoryType mt) { memory_type = mt; }
/// Set the kernel type used in PA extensions.
ActionType GetActionType() const { return action_type; }
/// Get the integration rule of the integrator (possibly NULL).
const IntegrationRule *GetIntegrationRule() const { return IntRule; }
+5 -7
View File
@@ -1010,12 +1010,9 @@ void ParFiniteElementSpace::GetEssentialVDofs(const Array<int> &bdr_attr_is_ess,
{
FiniteElementSpace::GetEssentialVDofs(bdr_attr_is_ess, ess_dofs, component);
if (Conforming())
{
// Make sure that processors without boundary elements mark
// their boundary dofs (if they have any).
Synchronize(ess_dofs);
}
// Make sure that processors without boundary elements mark
// their boundary dofs (if they have any).
Synchronize(ess_dofs);
}
void ParFiniteElementSpace::GetEssentialTrueDofs(const Array<int>
@@ -1041,7 +1038,8 @@ void ParFiniteElementSpace::GetEssentialTrueDofs(const Array<int>
{
if (bool(ted[i]) != bool(true_ess_dofs2[i])) { counter++; }
}
MFEM_VERIFY(counter == 0, "internal MFEM error: counter = " << counter);
MFEM_VERIFY(counter == 0, "internal MFEM error: counter = " << counter
<< ", rank = " << MyRank);
#endif
MarkerToList(true_ess_dofs, ess_tdof_list);
+4 -4
View File
@@ -65,13 +65,13 @@ static void Values2D(const int NE,
MFEM_SHARED double sm0[NBZ][MDQ*MDQ];
MFEM_SHARED double sm1[NBZ][MDQ*MDQ];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
ConstDeviceMatrix B(sB, D1D,Q1D);
DeviceMatrix DD(sm0[tidz], MD1, MD1);
DeviceMatrix DQ(sm1[tidz], MD1, MQ1);
DeviceMatrix QQ(sm0[tidz], MQ1, MQ1);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
for (int c = 0; c < VDIM; c++)
{
kernels::internal::LoadX(e,D1D,c,x,DD);
@@ -126,14 +126,14 @@ static void Values3D(const int NE,
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
ConstDeviceMatrix B(sB, D1D,Q1D);
DeviceCube DDD(sm0, MD1,MD1,MD1);
DeviceCube DDQ(sm1, MD1,MD1,MQ1);
DeviceCube DQQ(sm0, MD1,MQ1,MQ1);
DeviceCube QQQ(sm1, MQ1,MQ1,MQ1);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
for (int c = 0; c < VDIM; c++)
{
kernels::internal::LoadX(e,D1D,c,x,DDD);
+17
View File
@@ -74,6 +74,23 @@ public:
/** Fill the J and Data arrays of SparseMatrix corresponding to the sparsity
pattern given by this ElementRestriction, and the values of ea_data. */
void FillJAndData(const Vector &ea_data, SparseMatrix &mat) const;
/**
* @brief GatherMap
* @return the mapping from L dofs to E dofs.
*/
const Array<int> &GatherMap() const { return gatherMap; }
/**
* @brief Indices
* @return the local to global indices.
*/
const Array<int> &Indices() const { return indices; }
/**
* @brief Offsets
* @return the offsets for each global dof.
*/
const Array<int> &Offsets() const { return offsets; }
};
/// Operator that converts L2 FiniteElementSpace L-vectors to E-vectors.
+2 -2
View File
@@ -384,9 +384,9 @@ struct TDiffusionKernel<2,2,complex_t>
const complex_t w_det_J = Q.get(q,i,k) / (J11 * J22 - J21 * J12);
internal::MatrixOps<2,2>::Symm<Symm>::Set(
A.layout.ind1(i), A,
+ w_det_J * (J12*J12 + J22*J22), // (1,1)
w_det_J * (J12*J12 + J22*J22), // (1,1)
- w_det_J * (J11*J12 + J21*J22), // (2,1)
+ w_det_J * (J11*J11 + J21*J21) // (2,2)
w_det_J * (J11*J11 + J21*J21) // (2,2)
);
}
}
+10 -8
View File
@@ -19,6 +19,8 @@
namespace mfem
{
static IntegrationRules LobattoIntRules(0, Quadrature1D::GaussLobatto);
// Templated integration rules, cf. intrules.?pp
template <Geometry::Type G, int Q, int Order, typename real_t>
@@ -52,7 +54,7 @@ public:
static const IntegrationRule &GetIntRule()
{
return IntRules.Get(geom, order);
return LobattoIntRules.Get(geom, order);
}
// Multi-component weight assignment. qpt_layout_t must be (qpts x n1 x ...)
@@ -201,10 +203,10 @@ public:
template <int Dim, int Q, typename real_t>
class GaussIntegrationRule
: public TProductIntegrationRule<Dim, Q, 2*Q-1, real_t>
: public TProductIntegrationRule<Dim, Q, 2*Q-3, real_t>
{
public:
typedef TProductIntegrationRule<Dim,Q,2*Q-1,real_t> base_class;
typedef TProductIntegrationRule<Dim,Q,2*Q-3,real_t> base_class;
using base_class::geom;
using base_class::order;
@@ -226,11 +228,11 @@ public:
static const IntegrationRule &Get1DIntRule()
{
return IntRules.Get(Geometry::SEGMENT, order);
return LobattoIntRules.Get(Geometry::SEGMENT, order);
}
static const IntegrationRule &GetIntRule()
{
return IntRules.Get(geom, order);
return LobattoIntRules.Get(geom, order);
}
};
@@ -239,15 +241,15 @@ class TIntegrationRule;
template <int Order, typename real_t>
class TIntegrationRule<Geometry::SEGMENT, Order, real_t>
: public GaussIntegrationRule<1, Order/2+1, real_t> { };
: public GaussIntegrationRule<1, Order/2+2, real_t> { };
template <int Order, typename real_t>
class TIntegrationRule<Geometry::SQUARE, Order, real_t>
: public GaussIntegrationRule<2, Order/2+1, real_t> { };
: public GaussIntegrationRule<2, Order/2+2, real_t> { };
template <int Order, typename real_t>
class TIntegrationRule<Geometry::CUBE, Order, real_t>
: public GaussIntegrationRule<3, Order/2+1, real_t> { };
: public GaussIntegrationRule<3, Order/2+2, real_t> { };
// Triangle integration rules (based on intrules.cpp)
// These specializations define the number of quadrature points for each rule as
+275 -267
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File diff suppressed because it is too large Load Diff
+30 -27
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@@ -1133,7 +1133,7 @@ protected:
// Evaluation of the discrete target specification on different meshes.
// Owned.
AdaptivityEvaluator *adapt_eval;
AdaptivityEvaluator *adapt_lim_eval;
void SetDiscreteTargetBase(const GridFunction &tspec_);
void SetTspecAtIndex(int idx, const GridFunction &tspec_);
@@ -1156,7 +1156,7 @@ public:
#endif
amr_el(-1), lim_min_size(-0.1),
good_tspec(false), good_tspec_grad(false), good_tspec_hess(false),
adapt_eval(NULL) { }
adapt_lim_eval(NULL) { }
virtual ~DiscreteAdaptTC();
@@ -1232,8 +1232,8 @@ public:
void SetAdaptivityEvaluator(AdaptivityEvaluator *ae)
{
if (adapt_eval) { delete adapt_eval; }
adapt_eval = ae;
if (adapt_lim_eval) { delete adapt_lim_eval; }
adapt_lim_eval = ae;
}
const Vector &GetTspecPert1H() { return tspec_pert1h; }
@@ -1315,15 +1315,15 @@ protected:
int integ_order;
// Weight Coefficient multiplying the quality metric term.
Coefficient *coeff1; // not owned, if NULL -> coeff1 is 1.
Coefficient *metric_coeff; // not owned, if NULL -> metric_coeff is 1.
// Normalization factor for the metric term.
double metric_normal;
// Nodes and weight Coefficient used for "limiting" the TMOP_Integrator.
// These are both NULL when there is no limiting.
// The class doesn't own nodes0 and coeff0.
const GridFunction *nodes0;
Coefficient *coeff0;
// The class doesn't own lim_nodes0 and lim_coeff.
const GridFunction *lim_nodes0;
Coefficient *lim_coeff;
// Limiting reference distance. Not owned.
const GridFunction *lim_dist;
// Limiting function. Owned.
@@ -1332,20 +1332,21 @@ protected:
double lim_normal;
// Adaptive limiting.
const GridFunction *zeta_0; // Not owned.
const GridFunction *adapt_lim_gf0; // Not owned.
#ifdef MFEM_USE_MPI
const ParGridFunction *pzeta_0;
const ParGridFunction *adapt_lim_pgf0;
#endif
GridFunction *zeta; // Owned. Updated by adapt_eval.
Coefficient *coeff_zeta; // Not owned.
AdaptivityEvaluator *adapt_eval; // Not owned.
GridFunction *adapt_lim_gf; // Owned. Updated by adapt_lim_eval.
Coefficient *adapt_lim_coeff; // Not owned.
AdaptivityEvaluator *adapt_lim_eval; // Not owned.
// Surface fitting.
GridFunction *sigma, *sigma_bar; // Owned. Updated by sigma_eval.
const Array<bool> *sigma_marker; // Not owned.
Coefficient *coeff_sigma; // Not owned.
AdaptivityEvaluator *sigma_eval; // Not owned.
double sigma_normal;
GridFunction *surf_fit_gf,
*surf_fit_gf_bar; // Owned, Updated by surf_fit_eval.
const Array<bool> *surf_fit_marker; // Not owned.
Coefficient *surf_fit_coeff; // Not owned.
AdaptivityEvaluator *surf_fit_eval; // Not owned.
double surf_fit_normal;
DiscreteAdaptTC *discr_tc;
@@ -1416,7 +1417,7 @@ protected:
void ComputeNormalizationEnergies(const GridFunction &x,
double &metric_energy, double &lim_energy,
double &sigma_energy);
double &surf_fit_gf_energy);
void AssembleElementVectorExact(const FiniteElement &el,
ElementTransformation &T,
@@ -1471,7 +1472,7 @@ protected:
void DisableLimiting()
{
nodes0 = NULL; coeff0 = NULL; lim_dist = NULL;
lim_nodes0 = NULL; lim_coeff = NULL; lim_dist = NULL;
delete lim_func; lim_func = NULL;
}
@@ -1531,12 +1532,14 @@ public:
TMOP_Integrator(TMOP_QualityMetric *m, TargetConstructor *tc,
TMOP_QualityMetric *hm)
: h_metric(hm), metric(m), targetC(tc), IntegRules(NULL),
integ_order(-1), coeff1(NULL), metric_normal(1.0),
nodes0(NULL), coeff0(NULL),
integ_order(-1), metric_coeff(NULL), metric_normal(1.0),
lim_nodes0(NULL), lim_coeff(NULL),
lim_dist(NULL), lim_func(NULL), lim_normal(1.0),
zeta_0(NULL), zeta(NULL), coeff_zeta(NULL), adapt_eval(NULL),
sigma(NULL), sigma_bar(NULL), sigma_marker(NULL), coeff_sigma(NULL),
sigma_eval(NULL), sigma_normal(1.0),
adapt_lim_gf0(NULL), adapt_lim_gf(NULL), adapt_lim_coeff(NULL),
adapt_lim_eval(NULL),
surf_fit_gf(NULL), surf_fit_gf_bar(NULL), surf_fit_marker(NULL),
surf_fit_coeff(NULL),
surf_fit_eval(NULL), surf_fit_normal(1.0),
discr_tc(dynamic_cast<DiscreteAdaptTC *>(tc)),
fdflag(false), dxscale(1.0e3), fd_call_flag(false), exact_action(false)
{ PA.enabled = false; }
@@ -1564,7 +1567,7 @@ public:
Note that the Coefficient is evaluated in the physical configuration and
not in the target configuration which may be undefined. */
void SetCoefficient(Coefficient &w1) { coeff1 = &w1; }
void SetCoefficient(Coefficient &w1) { metric_coeff = &w1; }
/** @brief Limiting of the mesh displacements (general version).
@@ -1631,7 +1634,7 @@ public:
void GetSurfaceFittingErrors(double &err_avg, double &err_max);
/// Update the original/reference nodes used for limiting.
void SetLimitingNodes(const GridFunction &n0) { nodes0 = &n0; }
void SetLimitingNodes(const GridFunction &n0) { lim_nodes0 = &n0; }
/** @brief Computes the integral of W(Jacobian(Trt)) over a target zone.
@param[in] el Type of FiniteElement.
+25 -25
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@@ -38,23 +38,23 @@ void TMOP_Integrator::AssembleGradPA(const Vector &xe,
if (PA.dim == 2)
{
AssembleGradPA_2D(xe);
if (coeff0) { AssembleGradPA_C0_2D(xe); }
if (lim_coeff) { AssembleGradPA_C0_2D(xe); }
}
if (PA.dim == 3)
{
AssembleGradPA_3D(xe);
if (coeff0) { AssembleGradPA_C0_3D(xe); }
if (lim_coeff) { AssembleGradPA_C0_3D(xe); }
}
}
void TMOP_Integrator::AssemblePA_Limiting()
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// Return immediately if limiting is not enabled
if (coeff0 == nullptr) { return; }
MFEM_VERIFY(nodes0, "internal error");
if (lim_coeff == nullptr) { return; }
MFEM_VERIFY(lim_nodes0, "internal error");
MFEM_VERIFY(PA.enabled, "AssemblePA_Limiting but PA is not enabled!");
MFEM_VERIFY(lim_func, "No TMOP_LimiterFunction specification!")
@@ -68,14 +68,14 @@ void TMOP_Integrator::AssemblePA_Limiting()
const ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
// H0 for coeff0, (dim x dim) Q-vector
// H0 for lim_coeff, (dim x dim) Q-vector
PA.H0.UseDevice(true);
PA.H0.SetSize(PA.dim * PA.dim * PA.nq * NE, mt);
// coeff0 -> PA.C0 (Q-vector)
// lim_coeff -> PA.C0 (Q-vector)
PA.C0.UseDevice(true);
if (ConstantCoefficient* cQ =
dynamic_cast<ConstantCoefficient*>(coeff0))
dynamic_cast<ConstantCoefficient*>(lim_coeff))
{
PA.C0.SetSize(1, Device::GetMemoryType());
PA.C0.HostWrite();
@@ -90,17 +90,17 @@ void TMOP_Integrator::AssemblePA_Limiting()
ElementTransformation& T = *fes->GetElementTransformation(e);
for (int q = 0; q < ir.GetNPoints(); ++q)
{
C0(q,e) = coeff0->Eval(T, ir.IntPoint(q));
C0(q,e) = lim_coeff->Eval(T, ir.IntPoint(q));
}
}
}
// nodes0 -> PA.X0 (E-vector)
MFEM_VERIFY(nodes0->FESpace() == fes, "");
// lim_nodes0 -> PA.X0 (E-vector)
MFEM_VERIFY(lim_nodes0->FESpace() == fes, "");
const Operator *n0_R = fes->GetElementRestriction(ordering);
PA.X0.SetSize(n0_R->Height(), Device::GetMemoryType());
PA.X0.UseDevice(true);
n0_R->Mult(*nodes0, PA.X0);
n0_R->Mult(*lim_nodes0, PA.X0);
// Limiting distances: lim_dist -> PA.LD (E-vector)
// TODO: remove the hack for the case lim_dist == NULL.
@@ -177,8 +177,8 @@ void TMOP_Integrator::ComputeAllElementTargets(const Vector &xe) const
void TMOP_Integrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
PA.enabled = true;
PA.fes = &fes;
Mesh *mesh = fes.GetMesh();
@@ -217,8 +217,8 @@ void TMOP_Integrator::AssemblePA(const FiniteElementSpace &fes)
PA.Jtr_needs_update = true;
PA.Jtr_debug_grad = false;
// Limiting: coeff0 -> PA.C0, nodes0 -> PA.X0, lim_dist -> PA.LD, PA.H0
if (coeff0) { AssemblePA_Limiting(); }
// Limiting: lim_coeff -> PA.C0, lim_nodes0 -> PA.X0, lim_dist -> PA.LD, PA.H0
if (lim_coeff) { AssemblePA_Limiting(); }
}
void TMOP_Integrator::AssembleGradDiagonalPA(Vector &de) const
@@ -236,13 +236,13 @@ void TMOP_Integrator::AssembleGradDiagonalPA(Vector &de) const
if (PA.dim == 2)
{
AssembleDiagonalPA_2D(de);
if (coeff0) { AssembleDiagonalPA_C0_2D(de); }
if (lim_coeff) { AssembleDiagonalPA_C0_2D(de); }
}
if (PA.dim == 3)
{
AssembleDiagonalPA_3D(de);
if (coeff0) { AssembleDiagonalPA_C0_3D(de); }
if (lim_coeff) { AssembleDiagonalPA_C0_3D(de); }
}
}
@@ -258,13 +258,13 @@ void TMOP_Integrator::AddMultPA(const Vector &xe, Vector &ye) const
if (PA.dim == 2)
{
AddMultPA_2D(xe,ye);
if (coeff0) { AddMultPA_C0_2D(xe,ye); }
if (lim_coeff) { AddMultPA_C0_2D(xe,ye); }
}
if (PA.dim == 3)
{
AddMultPA_3D(xe,ye);
if (coeff0) { AddMultPA_C0_3D(xe,ye); }
if (lim_coeff) { AddMultPA_C0_3D(xe,ye); }
}
}
@@ -283,13 +283,13 @@ void TMOP_Integrator::AddMultGradPA(const Vector &re, Vector &ce) const
if (PA.dim == 2)
{
AddMultGradPA_2D(re,ce);
if (coeff0) { AddMultGradPA_C0_2D(re,ce); }
if (lim_coeff) { AddMultGradPA_C0_2D(re,ce); }
}
if (PA.dim == 3)
{
AddMultGradPA_3D(re,ce);
if (coeff0) { AddMultGradPA_C0_3D(re,ce); }
if (lim_coeff) { AddMultGradPA_C0_3D(re,ce); }
}
}
@@ -307,13 +307,13 @@ double TMOP_Integrator::GetLocalStateEnergyPA(const Vector &xe) const
if (PA.dim == 2)
{
energy = GetLocalStateEnergyPA_2D(xe);
if (coeff0) { energy += GetLocalStateEnergyPA_C0_2D(xe); }
if (lim_coeff) { energy += GetLocalStateEnergyPA_C0_2D(xe); }
}
if (PA.dim == 3)
{
energy = GetLocalStateEnergyPA_3D(xe);
if (coeff0) { energy += GetLocalStateEnergyPA_C0_3D(xe); }
if (lim_coeff) { energy += GetLocalStateEnergyPA_C0_3D(xe); }
}
return energy;
+3 -3
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@@ -181,9 +181,9 @@ template<int T_D1D, int T_Q1D, int T_MAX> return_t kernel(__VA_ARGS__)
if (K##kernel.Find(id)) { return K##kernel.At(id)(__VA_ARGS__,0,0); }\
else {\
constexpr int T_MAX = 4;\
const int D1D = (id>>4)&0xF, Q1D = id&0xF;\
MFEM_VERIFY(D1D <= MAX_D1D && Q1D <= MAX_Q1D, "Max size error!");\
return kernel<0,0,T_MAX>(__VA_ARGS__,D1D,Q1D); }
const int d1d = (id>>4)&0xF, q1d = id&0xF;\
MFEM_VERIFY(d1d <= MAX_D1D && q1d <= MAX_Q1D, "Max size error!");\
return kernel<0,0,T_MAX>(__VA_ARGS__,d1d,q1d); }
} // namespace kernels
+2 -1
View File
@@ -55,6 +55,8 @@ MFEM_REGISTER_TMOP_KERNELS(void, DatcSize,
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
ConstDeviceMatrix B(sB, D1D, Q1D);
DeviceCube DDD(sm0, MD1,MD1,MD1);
DeviceCube DDQ(sm1, MD1,MD1,MQ1);
@@ -88,7 +90,6 @@ MFEM_REGISTER_TMOP_KERNELS(void, DatcSize,
}
min = min_size[0];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
kernels::internal::EvalX(D1D,Q1D,B,DDD,DDQ);
kernels::internal::EvalY(D1D,Q1D,B,DDQ,DQQ);
kernels::internal::EvalZ(D1D,Q1D,B,DQQ,QQQ);
+3 -3
View File
@@ -97,9 +97,9 @@ MFEM_REGISTER_TMOP_KERNELS(void, AssembleDiagonalPA_Kernel_2D,
const double *Jtr = &J(0,0,qx,qy,e);
// Jrt = Jtr^{-1}
double j[4];
ConstDeviceMatrix Jrt(j,2,2);
kernels::CalcInverse<2>(Jtr, j);
double jrt_data[4];
ConstDeviceMatrix Jrt(jrt_data,2,2);
kernels::CalcInverse<2>(Jtr, jrt_data);
const double gg = G(qy,dy) * G(qy,dy);
const double gb = G(qy,dy) * B(qy,dy);
+4 -4
View File
@@ -68,8 +68,8 @@ MFEM_REGISTER_TMOP_KERNELS(void, AddMultGradPA_Kernel_C0_2D,
double Xh[2];
kernels::internal::PullEval<MQ1,NBZ>(Q1D,qx,qy,QQ,Xh);
double B[4];
DeviceMatrix H(B,2,2);
double H_data[4];
DeviceMatrix H(H_data,2,2);
for (int i = 0; i < DIM; i++)
{
for (int j = 0; j < DIM; j++)
@@ -78,9 +78,9 @@ MFEM_REGISTER_TMOP_KERNELS(void, AddMultGradPA_Kernel_C0_2D,
}
}
// p2 = B . Xh
// p2 = H . Xh
double p2[2];
kernels::Mult(2,2,B,Xh,p2);
kernels::Mult(2,2,H_data,Xh,p2);
kernels::internal::PushEval<MQ1,NBZ>(Q1D,qx,qy,p2,QQ);
}
}
+4 -4
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@@ -70,8 +70,8 @@ MFEM_REGISTER_TMOP_KERNELS(void, AddMultGradPA_Kernel_C0_3D,
double Xh[3];
kernels::internal::PullEval<MQ1>(Q1D,qx,qy,qz,QQQ,Xh);
double B[9];
DeviceMatrix H(B,3,3);
double H_data[9];
DeviceMatrix H(H_data,3,3);
for (int i = 0; i < DIM; i++)
{
for (int j = 0; j < DIM; j++)
@@ -80,9 +80,9 @@ MFEM_REGISTER_TMOP_KERNELS(void, AddMultGradPA_Kernel_C0_3D,
}
}
// p2 = B . Xh
// p2 = H . Xh
double p2[3];
kernels::Mult(3,3,B,Xh,p2);
kernels::Mult(3,3,H_data,Xh,p2);
kernels::internal::PushEval<MQ1>(Q1D,qx,qy,qz,p2,QQQ);
}
}
+1 -2
View File
@@ -55,6 +55,7 @@ MFEM_REGISTER_TMOP_KERNELS(void, SetupGradPA_Kernel_C0_3D,
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
MFEM_SHARED double sBLD[MQ1*MD1];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,bld,sBLD);
ConstDeviceMatrix BLD(sBLD, D1D, Q1D);
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
@@ -66,8 +67,6 @@ MFEM_REGISTER_TMOP_KERNELS(void, SetupGradPA_Kernel_C0_3D,
kernels::internal::LoadX(e,D1D,LD,DDD);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,bld,sBLD);
kernels::internal::EvalX(D1D,Q1D,BLD,DDD,DDQ);
kernels::internal::EvalY(D1D,Q1D,BLD,DDQ,DQQ);
kernels::internal::EvalZ(D1D,Q1D,BLD,DQQ,QQQ);
+1 -1
View File
@@ -62,6 +62,7 @@ MFEM_REGISTER_TMOP_KERNELS(void, AddMultPA_Kernel_C0_3D,
MFEM_SHARED double B[MQ1*MD1];
MFEM_SHARED double sBLD[MQ1*MD1];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,bld,sBLD);
ConstDeviceMatrix BLD(sBLD, D1D, Q1D);
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
@@ -86,7 +87,6 @@ MFEM_REGISTER_TMOP_KERNELS(void, AddMultPA_Kernel_C0_3D,
kernels::internal::LoadX<MD1>(e,D1D,X1,DDD1);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,B);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,bld,sBLD);
kernels::internal::EvalX(D1D,Q1D,BLD,DDD,DDQ);
kernels::internal::EvalY(D1D,Q1D,BLD,DDQ,DQQ);
+1 -1
View File
@@ -63,6 +63,7 @@ MFEM_REGISTER_TMOP_KERNELS(double, EnergyPA_C0_3D,
MFEM_SHARED double B[MQ1*MD1];
MFEM_SHARED double sBLD[MQ1*MD1];
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,bld,sBLD);
ConstDeviceMatrix BLD(sBLD, D1D, Q1D);
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
@@ -87,7 +88,6 @@ MFEM_REGISTER_TMOP_KERNELS(double, EnergyPA_C0_3D,
kernels::internal::LoadX<MD1>(e,D1D,X1,DDD1);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,B);
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,bld,sBLD);
kernels::internal::EvalX(D1D,Q1D,BLD,DDD,DDQ);
kernels::internal::EvalY(D1D,Q1D,BLD,DDQ,DQQ);
+10 -10
View File
@@ -837,26 +837,26 @@ void TMOPHRSolver::ParUpdate()
}
#endif
void TMOPHRSolver::UpdateNonlinearFormAndBC(Mesh *mesh, NonlinearForm *nlf)
void TMOPHRSolver::UpdateNonlinearFormAndBC(Mesh *mesh_, NonlinearForm *nlf_)
{
const FiniteElementSpace &fes = *mesh->GetNodalFESpace();
const FiniteElementSpace &fes = *mesh_->GetNodalFESpace();
// Update Nonlinear form and Set Essential BC
nlf->Update();
nlf_->Update();
const int dim = fes.GetFE(0)->GetDim();
if (move_bnd == false)
{
Array<int> ess_bdr(mesh->bdr_attributes.Max());
Array<int> ess_bdr(mesh_->bdr_attributes.Max());
ess_bdr = 1;
nlf->SetEssentialBC(ess_bdr);
nlf_->SetEssentialBC(ess_bdr);
}
else
{
const int nd = fes.GetBE(0)->GetDof();
int n = 0;
for (int i = 0; i < mesh->GetNBE(); i++)
for (int i = 0; i < mesh_->GetNBE(); i++)
{
const int attr = mesh->GetBdrElement(i)->GetAttribute();
const int attr = mesh_->GetBdrElement(i)->GetAttribute();
MFEM_VERIFY(!(dim == 2 && attr == 3),
"Boundary attribute 3 must be used only for 3D meshes. "
"Adjust the attributes (1/2/3/4 for fixed x/y/z/all "
@@ -866,9 +866,9 @@ void TMOPHRSolver::UpdateNonlinearFormAndBC(Mesh *mesh, NonlinearForm *nlf)
}
Array<int> ess_vdofs(n), vdofs;
n = 0;
for (int i = 0; i < mesh->GetNBE(); i++)
for (int i = 0; i < mesh_->GetNBE(); i++)
{
const int attr = mesh->GetBdrElement(i)->GetAttribute();
const int attr = mesh_->GetBdrElement(i)->GetAttribute();
fes.GetBdrElementVDofs(i, vdofs);
if (attr == 1) // Fix x components.
{
@@ -891,7 +891,7 @@ void TMOPHRSolver::UpdateNonlinearFormAndBC(Mesh *mesh, NonlinearForm *nlf)
{ ess_vdofs[n++] = vdofs[j]; }
}
}
nlf->SetEssentialVDofs(ess_vdofs);
nlf_->SetEssentialVDofs(ess_vdofs);
}
}
+18 -12
View File
@@ -240,7 +240,7 @@ ParAdvectorCGOper::ParAdvectorCGOper(const Vector &x_start,
ConvectionIntegrator *Kinteg = new ConvectionIntegrator(u_coeff);
if (al == AssemblyLevel::PARTIAL)
{
Kinteg->SetPAMemoryType(mt);
Kinteg->SetMemoryType(mt);
}
K.AddDomainIntegrator(Kinteg);
K.SetAssemblyLevel(al);
@@ -250,7 +250,7 @@ ParAdvectorCGOper::ParAdvectorCGOper(const Vector &x_start,
MassIntegrator *Minteg = new MassIntegrator;
if (al == AssemblyLevel::PARTIAL)
{
Minteg->SetPAMemoryType(mt);
Minteg->SetMemoryType(mt);
}
M.AddDomainIntegrator(Minteg);
M.SetAssemblyLevel(al);
@@ -444,15 +444,19 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
if (untangling == false && min_detT_out < 0.0)
{
// No untangling, and detJ got negative -- no good.
if (print_level >= 0)
{ mfem::out << "Scale = " << scale << " Neg det(J) found.\n"; }
if (print_options.iterations)
{
mfem::out << "Scale = " << scale << " Neg det(J) found.\n";
}
scale *= detJ_factor; continue;
}
if (untangling == true && min_detT_out < *min_det_ptr)
{
// Untangling, and detJ got even more negative -- no good.
if (print_level >= 0)
{ mfem::out << "Scale = " << scale << " Neg det(J) decreased.\n"; }
if (print_options.iterations)
{
mfem::out << "Scale = " << scale << " Neg det(J) decreased.\n";
}
scale *= detJ_factor; continue;
}
@@ -477,7 +481,7 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
if (energy_out > energy_in + 0.2*fabs(energy_in) ||
std::isnan(energy_out) != 0)
{
if (print_level >= 0)
if (print_options.iterations)
{
mfem::out << "Scale = " << scale << " Increasing energy: "
<< energy_in << " --> " << energy_out << '\n';
@@ -492,7 +496,7 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
if (norm_out > 1.2*norm_in)
{
if (print_level >= 0)
if (print_options.iterations)
{
mfem::out << "Scale = " << scale << " Norm increased: "
<< norm_in << " --> " << norm_out << '\n';
@@ -508,13 +512,15 @@ double TMOPNewtonSolver::ComputeScalingFactor(const Vector &x,
if (min_detT_out > 0.0)
{
*min_det_ptr = 0.0;
if (print_level >= 0)
if (print_options.summary || print_options.iterations ||
print_options.first_and_last)
{ mfem::out << "The mesh has been untangled at the used points!\n"; }
}
else { *min_det_ptr = untangle_factor * min_detT_out; }
}
if (print_level >= 0)
if (print_options.summary || print_options.iterations ||
print_options.first_and_last)
{
if (untangling)
{
@@ -568,9 +574,9 @@ void TMOPNewtonSolver::ProcessNewState(const Vector &x) const
if (parallel)
{
#ifdef MFEM_USE_MPI
const ParNonlinearForm *nlf =
const ParNonlinearForm *pnlf =
dynamic_cast<const ParNonlinearForm *>(oper);
const ParFiniteElementSpace *pfesc = nlf->ParFESpace();
const ParFiniteElementSpace *pfesc = pnlf->ParFESpace();
Vector x_loc(pfesc->GetVSize());
pfesc->GetProlongationMatrix()->Mult(x, x_loc);
for (int i = 0; i < integs.Size(); i++)
+347 -22
View File
@@ -1192,6 +1192,114 @@ void Prolongation2D(const int NE, const int D1D, const int Q1D,
});
}
template <int D1D, int Q1D, int NBZ = 1>
void FastProlongation3D(const int lND,
const int hNQ,
const int NE,
const int *lmap,
const Vector& x,
const int *hmap,
Vector& y,
const Array<double>& B,
const Vector& mask)
{
const auto B_ = Reshape(B.Read(), Q1D, D1D);
const auto lMAP = Reshape(lmap, D1D,D1D,D1D, NE);
const auto hMAP = Reshape(hmap, Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x.Read(), lND);
const auto M = Reshape(mask.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), hNQ);
y = 0.0;
assert(Q1D<=8);
MFEM_FORALL_3D(be, (NE+NBZ-1)/NBZ, Q1D, Q1D, NBZ,
{
double u[Q1D];
const int tz = MFEM_THREAD_ID(z);
const int e = be * MFEM_THREAD_SIZE(z) + tz;
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[NBZ][Q1D][Q1D][Q1D];
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
if (tz == 0) { s_B[qx][dy] = B_(qx,dy); }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B_(qx,dx);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const int gid = lMAP(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] += X(idx)* Bx;
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] += zyX * s_B[qy][dy]; }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[tz][dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation & Q-function
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] += zYX * s_B[qz][dz]; }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const int gid = hMAP(qx,qy,qz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
const double value = M(qx, qy, qz, e) * u[qz];
AtomicAdd(Y[idx], value);
}
}
}
MFEM_SYNC_THREAD;
});
}
void Prolongation3D(const int NE, const int D1D, const int Q1D,
const Vector& localL, Vector& localH,
const Array<double>& B, const Vector& mask)
@@ -1303,6 +1411,7 @@ void Restriction2D(const int NE, const int D1D, const int Q1D,
}
});
}
void Restriction3D(const int NE, const int D1D, const int Q1D,
const Vector& localH, Vector& localL,
const Array<double>& Bt, const Vector& mask)
@@ -1364,6 +1473,129 @@ void Restriction3D(const int NE, const int D1D, const int Q1D,
}
});
}
template<int D1D, int Q1D, int NBZ = 1>
void FastRestriction3D(const int lND,
const int hNQ,
const int NE,
const int *hmap,
const Vector& x,
const int *lmap,
Vector& y,
const Array<double>& Bt,
const Vector& mask)
{
const auto Bt_ = Reshape(Bt.Read(), D1D, Q1D);
const auto lMAP = Reshape(lmap, D1D,D1D,D1D, NE);
const auto hMAP = Reshape(hmap, Q1D,Q1D,Q1D, NE);
const auto M = Reshape(mask.Read(), Q1D, Q1D, Q1D, NE);
const auto X = Reshape(x.Read(), hNQ);
auto Y = Reshape(y.ReadWrite(), lND);
y = 0.0;
assert(Q1D<=8);
MFEM_FORALL_3D(be, (NE+NBZ-1)/NBZ, Q1D, Q1D, NBZ,
{
double u[Q1D];
const int tz = MFEM_THREAD_ID(z);
const int e = be * MFEM_THREAD_SIZE(z) + tz;
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[NBZ][Q1D][Q1D][Q1D];
// Load B
if (tz == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
{ s_B[qx][dy] = Bt_(dy,qx); }
}
}
}
MFEM_SYNC_THREAD;
// Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const int gid = hMAP(qx,qy,qz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
s_q[tz][qz][qy][qx] = M(qx, qy, qz, e) * X(idx);
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[tz][qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * s_B[qz][dz]; }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * s_B[qy][dy]; }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[tz][dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * s_B[qx][dx]; }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const int gid = lMAP(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
const double value = u[dx];
AtomicAdd(Y[idx], value);
}
}
}
MFEM_SYNC_THREAD;
});
}
} // namespace TransferKernels
@@ -1380,22 +1612,69 @@ void TensorProductPRefinementTransferOperator::Mult(const Vector& x,
return;
}
elem_restrict_lex_l->Mult(x, localL);
if (dim == 2)
if (Device::FastKernelsEnabled())
{
TransferKernels::Prolongation2D(NE, D1D, Q1D, localL, localH, B, mask);
}
else if (dim == 3)
{
TransferKernels::Prolongation3D(NE, D1D, Q1D, localL, localH, B, mask);
assert(dim==3);
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
// lFESpace map idx
const int lND = lFESpace.GetNDofs();
const Operator *lERop = lFESpace.GetElementRestriction(ordering);
const ElementRestriction* lER = dynamic_cast<const ElementRestriction*>(lERop);
assert(lER);
const int *lmap = lER->GatherMap().Read();
assert(lER->GatherMap().Size() == D1D*D1D*D1D*NE);
// hFESpace map idx
const int hNQ = hFESpace.GetNDofs();
const Operator *hERop = elem_restrict_lex_h;
const ElementRestriction* hER = dynamic_cast<const ElementRestriction*>(hERop);
assert(hER);
const int *hmap = hER->GatherMap().Read();
assert(hER->GatherMap().Size() == Q1D*Q1D*Q1D*NE);
void (*Ker)(const int lND,
const int hNQ,
const int NE,
const int *lmap,
const Vector& x,
const int *hmap,
Vector& y,
const Array<double>& B,
const Vector& mask) = nullptr;
const int id = (D1D << 4) | Q1D;
switch (id) // orders 1~8
{
case 0x23: Ker=TransferKernels::FastProlongation3D<2,3>; break; // 1
case 0x34: Ker=TransferKernels::FastProlongation3D<3,4>; break; // 2
case 0x35: Ker=TransferKernels::FastProlongation3D<3,5>; break;
case 0x45: Ker=TransferKernels::FastProlongation3D<4,5>; break; // 3
case 0x56: Ker=TransferKernels::FastProlongation3D<5,6>; break; // 4
case 0x57: Ker=TransferKernels::FastProlongation3D<5,7>; break;
case 0x67: Ker=TransferKernels::FastProlongation3D<6,7>; break; // 5
case 0x78: Ker=TransferKernels::FastProlongation3D<7,8>; break; // 6
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
Ker(lND, hNQ, NE, lmap, x, hmap, y, B, mask);
}
else
{
MFEM_ABORT("TensorProductPRefinementTransferOperator::Mult not "
"implemented for dim = "
<< dim);
elem_restrict_lex_l->Mult(x, localL);
if (dim == 2)
{
TransferKernels::Prolongation2D(NE, D1D, Q1D, localL, localH, B, mask);
}
else if (dim == 3)
{
TransferKernels::Prolongation3D(NE, D1D, Q1D, localL, localH, B, mask);
}
else
{
MFEM_ABORT("TensorProductPRefinementTransferOperator::Mult not "
"implemented for dim = "
<< dim);
}
elem_restrict_lex_h->MultTranspose(localH, y);
}
elem_restrict_lex_h->MultTranspose(localH, y);
}
void TensorProductPRefinementTransferOperator::MultTranspose(const Vector& x,
@@ -1406,22 +1685,68 @@ void TensorProductPRefinementTransferOperator::MultTranspose(const Vector& x,
return;
}
elem_restrict_lex_h->Mult(x, localH);
if (dim == 2)
if (Device::FastKernelsEnabled())
{
TransferKernels::Restriction2D(NE, D1D, Q1D, localH, localL, Bt, mask);
}
else if (dim == 3)
{
TransferKernels::Restriction3D(NE, D1D, Q1D, localH, localL, Bt, mask);
assert(dim==3);
// lFESpace map idx
const int lND = lFESpace.GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *lERop = lFESpace.GetElementRestriction(ordering);
const ElementRestriction* lER = dynamic_cast<const ElementRestriction*>(lERop);
assert(lER);
const int *lmap = lER->GatherMap().Read();
// hFESpace map idx
const int hNQ = hFESpace.GetNDofs();
const Operator *hERop = elem_restrict_lex_h;
const ElementRestriction* hER = dynamic_cast<const ElementRestriction*>(hERop);
assert(hER);
const int *hmap = hER->GatherMap().Read();
assert(hER->GatherMap().Size() == Q1D*Q1D*Q1D*NE);
void (*Ker)(const int lND,
const int hNQ,
const int NE,
const int *hmap,
const Vector& x,
const int *lmap,
Vector& y,
const Array<double>& Bt,
const Vector& mask) = nullptr;
const int id = (D1D << 4) | Q1D;
switch (id) // orders 1~8
{
case 0x23: Ker=TransferKernels::FastRestriction3D<2,3>; break; // 1
case 0x34: Ker=TransferKernels::FastRestriction3D<3,4>; break; // 2
case 0x35: Ker=TransferKernels::FastRestriction3D<3,5>; break;
case 0x45: Ker=TransferKernels::FastRestriction3D<4,5>; break; // 3
case 0x56: Ker=TransferKernels::FastRestriction3D<5,6>; break; // 4
case 0x57: Ker=TransferKernels::FastRestriction3D<5,7>; break;
case 0x67: Ker=TransferKernels::FastRestriction3D<6,7>; break; // 5
case 0x78: Ker=TransferKernels::FastRestriction3D<7,8>; break; // 6
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
Ker(lND, hNQ, NE, hmap, x, lmap, y, Bt, mask);
}
else
{
MFEM_ABORT("TensorProductPRefinementTransferOperator::MultTranspose not "
"implemented for dim = "
<< dim);
elem_restrict_lex_h->Mult(x, localH);
if (dim == 2)
{
TransferKernels::Restriction2D(NE, D1D, Q1D, localH, localL, Bt, mask);
}
else if (dim == 3)
{
TransferKernels::Restriction3D(NE, D1D, Q1D, localH, localL, Bt, mask);
}
else
{
MFEM_ABORT("TensorProductPRefinementTransferOperator::MultTranspose not "
"implemented for dim = "
<< dim);
}
elem_restrict_lex_l->MultTranspose(localL, y);
}
elem_restrict_lex_l->MultTranspose(localL, y);
}
#ifdef MFEM_USE_MPI
+15
View File
@@ -18,6 +18,7 @@
#include <cusparse.h>
#include <library_types.h>
#include <cuda_runtime.h>
#include <curand.h>
#include <cuda.h>
#endif
#include "cuda.hpp"
@@ -39,20 +40,26 @@
#endif
#if !(defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP))
#define MFEM_GLOBAL
#define MFEM_DEVICE
#define MFEM_LAMBDA
#define MFEM_GLOBAL
#define MFEM_HOST_DEVICE
// MFEM_DEVICE_SYNC is made available for debugging purposes
#define MFEM_DEVICE_SYNC
// MFEM_STREAM_SYNC is used for UVM and MPI GPU-Aware kernels
#define MFEM_STREAM_SYNC
#define MFEM_LAUNCH_BOUNDS(...)
#define MFEM_LAUNCH_KERNEL(Kernel,Grid,Block,Smem,...) Kernel(__VA_ARGS__)
#endif
#if !((defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)) || \
(defined(MFEM_USE_HIP) && defined(__HIP_DEVICE_COMPILE__)))
#define MFEM_SHARED
#define MFEM_SYNC_THREAD
#define MFEM_GRID_DIM(k) 1
#define MFEM_BLOCK_ID(k) 0
#define MFEM_BLOCK_DIM(k) 1
#define MFEM_THREAD_ID(k) 0
#define MFEM_THREAD_SIZE(k) 1
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=0; i<N; i++)
@@ -91,4 +98,12 @@ MFEM_HOST_DEVICE T AtomicAdd(T &add, const T val)
#endif
}
/// Helper function to return and increment a given pointer with a given size
template<typename T> MFEM_HOST_DEVICE static
inline T *DeviceMemAlloc(T* &mem, size_t size) noexcept
{
T* base = mem;
return (mem += size, base);
}
#endif // MFEM_BACKENDS_HPP
+7
View File
@@ -19,9 +19,13 @@
#define MFEM_CUDA_BLOCKS 256
#ifdef MFEM_USE_CUDA
#define MFEM_GLOBAL __global__
#define MFEM_DEVICE __device__
#define MFEM_LAMBDA __host__
#define MFEM_GLOBAL __global__
#define MFEM_HOST_DEVICE __host__ __device__
#define MFEM_LAUNCH_BOUNDS(NTH,NBK) __launch_bounds__(NTH,NBK)
#define MFEM_DEVICE_CHECK MFEM_GPU_CHECK((cudaDeviceSynchronize(),cudaGetLastError()))
#define MFEM_DEVICE_SYNC MFEM_GPU_CHECK(cudaDeviceSynchronize())
#define MFEM_STREAM_SYNC MFEM_GPU_CHECK(cudaStreamSynchronize(0))
// Define a CUDA error check macro, MFEM_GPU_CHECK(x), where x returns/is of
@@ -37,12 +41,15 @@
} \
} \
while (0)
#define MFEM_LAUNCH_KERNEL(Kernel,Grid,Block,Smem,...) \
Kernel<<<Grid,Block,sizeof(double)*(Smem),0>>>(__VA_ARGS__)
#endif // MFEM_USE_CUDA
// Define the MFEM inner threading macros
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)
#define MFEM_SHARED __shared__
#define MFEM_SYNC_THREAD __syncthreads()
#define MFEM_GRID_DIM(k) gridDim.k
#define MFEM_BLOCK_ID(k) blockIdx.k
#define MFEM_THREAD_ID(k) threadIdx.k
#define MFEM_THREAD_SIZE(k) blockDim.k
+178
View File
@@ -0,0 +1,178 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_DEBUG_HPP
#define MFEM_DEBUG_HPP
#include <string>
#include <cstring>
#include <iomanip>
#include <iostream>
#include "globals.hpp"
#ifdef MFEM_USE_MPI
#include <mpi.h>
#endif
namespace mfem
{
class Debug
{
const bool debug = false;
public:
inline Debug() {}
inline Debug(const int mpi_rank,
const char *FILE, const int LINE,
const char *FUNC, int COLOR): debug(true)
{
if (!debug) { return; }
const char *base = Strrnchr(FILE,'/', 2);
const char *file = base ? base + 1 : FILE;
const uint8_t color = COLOR ? COLOR : 20 + Checksum8(FILE) % 210;
mfem::out << "\033[38;5;" << std::to_string(color) << "m";
mfem::out << mpi_rank << std::setw(30) << file << ":";
mfem::out << "\033[2m" << std::setw(4) << LINE << "\033[22m: ";
if (FUNC) { mfem::out << "[" << FUNC << "] "; }
mfem::out << "\033[1m";
}
~Debug()
{
if (!debug) { return; }
mfem::out << "\033[m";
mfem::out << std::endl;
}
template <typename T>
inline void operator<<(const T &arg) const noexcept { mfem::out << arg; }
template<typename T, typename... Args>
inline void operator()(const char *fmt, const T &arg,
Args... args) const noexcept
{
if (!debug) { return; }
for (; *fmt != '\0'; fmt++ )
{
if (*fmt == '%')
{
fmt++;
const char c = *fmt;
if (c == 'p') { operator<<(arg); }
if (c == 's' || c == 'd' || c == 'f') { operator<<(arg); }
if (c == 'x' || c == 'X')
{
mfem::out << std::hex;
if (c == 'X') { mfem::out << std::uppercase; }
operator<<(arg);
mfem::out << std::nouppercase << std::dec;
}
if (c == '.')
{
fmt++;
const char c = *fmt;
char num[8] = { 0 };
for (int k = 0; *fmt != '\0'; fmt++, k++)
{
if (*fmt == 'e' || *fmt == 'f') { break; }
if (*fmt < 0x30 || *fmt > 0x39) { break; }
num[k] = *fmt;
}
const int fx = std::atoi(num);
if (c == 'e') { mfem::out << std::scientific; }
if (c == 'f') { mfem::out << std::fixed; }
mfem::out << std::setprecision(fx);
operator<<(arg);
mfem::out << std::setprecision(6);
}
return operator()(fmt + 1, args...);
}
operator<<(*fmt);
}
}
template<typename T>
inline void operator()(const T &arg) const noexcept
{
if (!debug) { return; }
operator<<(arg);
}
inline void operator()() const noexcept { }
public:
static const Debug Set(const char *FILE, const int LINE, const char *FUNC,
int COLOR = 0)
{
static int mpi_dbg = 0, mpi_rank = 0;
static bool env_mpi = false, env_dbg = false;
static bool ini_dbg = false;
if (!ini_dbg)
{
const char *DBG = getenv("MFEM_DEBUG");
const char *MPI = getenv("MFEM_DEBUG_MPI");
env_dbg = DBG != nullptr;
env_mpi = MPI != nullptr;
#ifdef MFEM_USE_MPI
int mpi_ini = false;
MPI_Initialized(&mpi_ini);
if (mpi_ini) { MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); }
mpi_dbg = atoi(env_mpi ? MPI : "0");
#endif
ini_dbg = true;
}
const bool debug = (env_dbg && (!env_mpi || mpi_rank == mpi_dbg));
return debug ? Debug(mpi_rank, FILE, LINE, FUNC, COLOR) : Debug();
}
private:
inline uint8_t Checksum8(const char *bfr)
{
unsigned int chk = 0;
size_t len = strlen(bfr);
for (; len; len--,bfr++) { chk += static_cast<unsigned int>(*bfr); }
return (uint8_t) chk;
}
inline const char *Strrnchr(const char *s, const unsigned char c, int n)
{
size_t len = strlen(s);
char *p = const_cast<char*>(s) + len - 1;
for (; n; n--,p--,len--)
{
for (; len; p--,len--)
if (*p == c) { break; }
if (!len) { return nullptr; }
if (n == 1) { return p; }
}
return nullptr;
}
};
#ifndef MFEM_DEBUG_COLOR
#define MFEM_DEBUG_COLOR 0
#endif
#define dbg(...) \
mfem::Debug::Set(__FILE__,__LINE__,__FUNCTION__,MFEM_DEBUG_COLOR).\
operator()(__VA_ARGS__)
} // mfem namespace
#define DBG(...) { printf("\033[33m"); \
printf(__VA_ARGS__); \
printf(" \n\033[m"); \
fflush(0); }
#endif // MFEM_DEBUG_HPP
+27 -14
View File
@@ -177,7 +177,7 @@ Device::~Device()
Get().device_mem_class = MemoryClass::HOST;
}
void Device::Configure(const std::string &device, const int dev)
void Device::Configure(const std::string &device, const int device_id)
{
// If a device was configured via the environment, skip the configuration,
// and avoid the 'singleton_device' to destroy the mm.
@@ -240,7 +240,7 @@ void Device::Configure(const std::string &device, const int dev)
#endif
// Perform setup.
Get().Setup(dev);
Get().Setup(device_id);
// Enable the device
Enable();
@@ -276,35 +276,35 @@ void Device::SetMemoryTypes(MemoryType h_mt, MemoryType d_mt)
// the call mm.Configure(...) in UpdateMemoryTypeAndClass()
}
void Device::Print(std::ostream &out)
void Device::Print(std::ostream &os)
{
out << "Device configuration: ";
os << "Device configuration: ";
bool add_comma = false;
for (int i = 0; i < Backend::NUM_BACKENDS; i++)
{
if (backends & internal::backend_list[i])
{
if (add_comma) { out << ','; }
if (add_comma) { os << ','; }
add_comma = true;
out << internal::backend_name[i];
os << internal::backend_name[i];
}
}
out << '\n';
os << '\n';
#ifdef MFEM_USE_CEED
if (Allows(Backend::CEED_MASK))
{
const char *ceed_backend;
CeedGetResource(internal::ceed, &ceed_backend);
out << "libCEED backend: " << ceed_backend << '\n';
os << "libCEED backend: " << ceed_backend << '\n';
}
#endif
out << "Memory configuration: "
<< MemoryTypeName[static_cast<int>(host_mem_type)];
os << "Memory configuration: "
<< MemoryTypeName[static_cast<int>(host_mem_type)];
if (Device::Allows(Backend::DEVICE_MASK))
{
out << ',' << MemoryTypeName[static_cast<int>(device_mem_type)];
os << ',' << MemoryTypeName[static_cast<int>(device_mem_type)];
}
out << std::endl;
os << std::endl;
}
void Device::UpdateMemoryTypeAndClass()
@@ -363,6 +363,19 @@ void Device::UpdateMemoryTypeAndClass()
device_mem_type = MemoryType::MANAGED;
}
// Enable the non deterministic kernels shortcut when requested
if (device_option && !strncmp(device_option, "fast", 4))
{
deterministic_kernels = DETERMINISTIC_KERNELS::OFF;
kernels_version = atoi(device_option + 4);
}
// Enable the version shortcut when requested
if (device_option && !strncmp(device_option, "ver", 3))
{
kernels_version = atoi(device_option + 3);
}
// Enable the DEBUG mode when requested
if (debug)
{
@@ -502,12 +515,12 @@ static void CeedDeviceSetup(const char* ceed_spec)
#endif
}
void Device::Setup(const int device)
void Device::Setup(const int device_id)
{
MFEM_VERIFY(ngpu == -1, "the mfem::Device is already configured!");
ngpu = 0;
dev = device;
dev = device_id;
#ifndef MFEM_USE_CUDA
MFEM_VERIFY(!Allows(Backend::CUDA_MASK),
"the CUDA backends require MFEM built with MFEM_USE_CUDA=YES");
+18 -1
View File
@@ -123,11 +123,14 @@ class Device
private:
friend class MemoryManager;
enum MODES {SEQUENTIAL, ACCELERATED};
enum DETERMINISTIC_KERNELS {ON, OFF};
static bool device_env, mem_host_env, mem_device_env, mem_types_set;
static Device device_singleton;
MODES mode = Device::SEQUENTIAL;
/// Device kernels are set to be deterministic by default.
DETERMINISTIC_KERNELS deterministic_kernels = DETERMINISTIC_KERNELS::ON;
int dev = 0; ///< Device ID of the configured device.
int ngpu = -1; ///< Number of detected devices; -1: not initialized.
/// Bitwise-OR of all configured backends.
@@ -145,12 +148,14 @@ private:
MemoryClass device_mem_class = MemoryClass::HOST;
char *device_option = NULL;
/// Kernels version number set from the device shortcut
int kernels_version = 0;
Device(Device const&);
void operator=(Device const&);
static Device& Get() { return device_singleton; }
/// Setup switcher based on configuration settings
void Setup(const int dev = 0);
void Setup(const int device_id = 0);
void MarkBackend(Backend::Id b) { backends |= b; }
@@ -248,6 +253,18 @@ public:
/// The opposite of IsEnabled().
static inline bool IsDisabled() { return !IsEnabled(); }
/// Return true if the fast kernels are allowed.
static inline bool FastKernelsEnabled()
{
return Get().deterministic_kernels == OFF;
}
/// Return the kernel version to use, set from the device shortcut.
static inline int KernelsVersion()
{
return Get().kernels_version;
}
/// Get the device id of the configured device.
static inline int GetId() { return Get().dev; }
+19
View File
@@ -32,12 +32,31 @@ const int MAX_D1D = 14;
const int MAX_Q1D = 14;
#endif
/** @brief Create a scratch memory on the device. */
template<int GRID, typename T = double>
static T *ScratchMem(const int sm_size)
{
if (GRID==0) { return nullptr; }
static Memory<T> data;
if (sm_size*GRID > data.Capacity())
{
data.Delete();
data.New(sm_size*GRID, Device::GetDeviceMemoryType());
data.UseDevice(true);
}
return data.Write(Device::GetDeviceMemoryClass(), data.Capacity());
}
// MFEM pragma macros that can be used inside MFEM_FORALL macros.
#define MFEM_PRAGMA(X) _Pragma(#X)
// MFEM_UNROLL pragma macro that can be used inside MFEM_FORALL macros.
#if defined(MFEM_USE_CUDA)
#define MFEM_UNROLL(N) MFEM_PRAGMA(unroll(N))
#elif defined(__clang__)
#define MFEM_UNROLL(N) MFEM_PRAGMA(unroll N)
#elif __GNUC__ >= 8
#define MFEM_UNROLL(N) MFEM_PRAGMA(GCC unroll N)
#else
#define MFEM_UNROLL(N)
#endif
+4 -4
View File
@@ -1228,12 +1228,12 @@ Graph::reweight(uint k)
// Linearly order graph.
void
Graph::order(Functional* functional, uint iterations, uint window, uint period,
uint seed, Progress* progress)
Graph::order(Functional* functional_, uint iterations, uint window, uint period,
uint seed, Progress* progress_)
{
// Initialize graph.
this->functional = functional;
progress = this->progress = progress ? progress : new Progress;
this->functional = functional_;
progress_ = this->progress = progress_ ? progress_ : new Progress;
for (level = 0; (1u << level) < nodes(); level++);
place();
Float mincost = cost();
+5
View File
@@ -19,6 +19,7 @@
#define MFEM_HIP_BLOCKS 256
#ifdef MFEM_USE_HIP
#define MFEM_GLOBAL __global__
#define MFEM_DEVICE __device__
#define MFEM_LAMBDA __host__ __device__
#define MFEM_HOST_DEVICE __host__ __device__
@@ -37,6 +38,8 @@
} \
} \
while (0)
#define MFEM_LAUNCH_KERNEL(Kernel,Grid,Block,Smem,...) \
hipLaunchKernelGGL(Kernel,Grid,Block,sizeof(double)*(Smem),0,__VA_ARGS__)
#endif // MFEM_USE_HIP
// Define the MFEM inner threading macros
@@ -44,6 +47,8 @@
#define MFEM_SHARED __shared__
#define MFEM_SYNC_THREAD __syncthreads()
#define MFEM_BLOCK_ID(k) hipBlockIdx_ ##k
#define MFEM_BLOCK_DIM(k) hipBlockDim_ ##k
#define MFEM_GRID_DIM(k) hipGridDim_ ##k
#define MFEM_THREAD_ID(k) hipThreadIdx_ ##k
#define MFEM_THREAD_SIZE(k) hipBlockDim_ ##k
#define MFEM_FOREACH_THREAD(i,k,N) \
+5 -4
View File
@@ -849,13 +849,14 @@ inline void Memory<T>::New(int size, MemoryType mt)
}
template <typename T>
inline void Memory<T>::New(int size, MemoryType h_mt, MemoryType d_mt)
inline void Memory<T>::New(int size, MemoryType host_mt, MemoryType device_mt)
{
capacity = size;
const size_t bytes = size*sizeof(T);
this->h_mt = h_mt;
T *h_tmp = (h_mt == MemoryType::HOST) ? NewHOST(size) : nullptr;
h_ptr = (T*)MemoryManager::New_(h_tmp, bytes, h_mt, d_mt, VALID_HOST, flags);
this->h_mt = host_mt;
T *h_tmp = (host_mt == MemoryType::HOST) ? NewHOST(size) : nullptr;
h_ptr = (T*)MemoryManager::New_(h_tmp, bytes, host_mt, device_mt,
VALID_HOST, flags);
}
template <typename T>
+314
View File
@@ -0,0 +1,314 @@
// Copyright (c) 2017, Lawrence Livermore National Security, LLC. Produced at
// the Lawrence Livermore National Laboratory. LLNL-CODE-734707. All Rights
// reserved. See files LICENSE and NOTICE for details.
//
// This file is part of CEED, a collection of benchmarks, miniapps, software
// libraries and APIs for efficient high-order finite element and spectral
// element discretizations for exascale applications. For more information and
// source code availability see http://github.com/ceed.
//
// The CEED research is supported by the Exascale Computing Project 17-SC-20-SC,
// a collaborative effort of two U.S. Department of Energy organizations (Office
// of Science and the National Nuclear Security Administration) responsible for
// the planning and preparation of a capable exascale ecosystem, including
// software, applications, hardware, advanced system engineering and early
// testbed platforms, in support of the nation's exascale computing imperative.
#ifndef MFEM_NVVP_HPP
#define MFEM_NVVP_HPP
#include <string>
#include <cstring>
#include <cassert>
#include "globals.hpp"
#include "backends.hpp"
#if defined(MFEM_USE_CUDA) //||1
#include <cuda.h>
#include <nvToolsExt.h>
#include <cudaProfiler.h>
#include <cuda_runtime.h>
#else // MFEM_USE_CUDA
typedef struct
{
uint16_t version;
uint16_t size;
uint32_t category;
int32_t colorType;
uint32_t color;
int32_t payloadType;
int32_t reserved0;
int32_t messageType;
struct { const char* ascii; } message;
} nvtxEventAttributes_t;
#define NVTX_VERSION 2
#define NVTX_COLOR_ARGB 1
#define NVTX_MESSAGE_TYPE_ASCII 1
#define NVTX_EVENT_ATTRIB_STRUCT_SIZE \
((uint16_t)(sizeof(nvtxEventAttributes_t)))
inline int nvtxRangePushEx(const nvtxEventAttributes_t*) { return 0; }
inline int nvtxRangePop(void) { return 0; }
#endif // MFEM_USE_CUDA
namespace mfem
{
// en.wikipedia.org/wiki/Web_colors#Hex_triplet
typedef enum
{
Black, NavyBlue, DarkBlue, MediumBlue, Blue, DarkGreen, WebGreen, Teal,
DarkCyan, DeepSkyBlue, DarkTurquoise, MediumSpringGreen, Green, Lime,
SpringGreen, Aqua, Cyan, MidnightBlue, DodgerBlue, LightSeaGreen,
ForestGreen, SeaGreen, DarkSlateGray, LimeGreen, MediumSeaGreen,
Turquoise, RoyalBlue, SteelBlue, DarkSlateBlue, MediumTurquoise, Indigo,
DarkOliveGreen, CadetBlue, Cornflower, RebeccaPurple, MediumAquamarine,
DimGray, SlateBlue, OliveDrab, SlateGray, LightSlateGray,
MediumSlateBlue, LawnGreen, WebMaroon, WebPurple, Chartreuse,
Aquamarine, Olive, WebGray, SkyBlue, LightSkyBlue, BlueViolet, DarkRed,
DarkMagenta, SaddleBrown, DarkSeaGreen, LightGreen, MediumPurple,
DarkViolet, PaleGreen, DarkOrchid, YellowGreen, Purple, Sienna, Brown,
DarkGray, LightBlue, GreenYellow, PaleTurquoise, Maroon,
LightSteelBlue, PowderBlue, Firebrick, DarkGoldenrod, MediumOrchid,
RosyBrown, DarkKhaki, Gray, Silver, MediumVioletRed, IndianRed, Peru,
Chocolate, Tan, LightGray, Thistle, Orchid, Goldenrod, PaleVioletRed,
Crimson, Gainsboro, Plum, Burlywood, LightCyan, Lavender, DarkSalmon,
Violet, PaleGoldenrod, LightCoral, Khaki, AliceBlue, Honeydew, Azure,
SandyBrown, Wheat, Beige, WhiteSmoke, MintCream, GhostWhite, Salmon,
AntiqueWhite, Linen, LightGoldenrod, OldLace, Red, Fuchsia, Magenta,
DeepPink, OrangeRed, Tomato, HotPink, Coral, DarkOrange, LightSalmon,
Orange, LightPink, Pink, Gold, PeachPuff, NavajoWhite, Moccasin,
Bisque, MistyRose, BlanchedAlmond, PapayaWhip, LavenderBlush, Seashell,
Cornsilk, LemonChiffon, FloralWhite, Snow, Yellow, LightYellow, Ivory,
White
} COLOR_NAMES;
static constexpr uint32_t HEX_COLORS[] =
{
0x000000, 0x000080, 0x00008B, 0x0000CD, 0x0000FF, 0x006400, 0x008000,
0x008080, 0x008B8B, 0x00BFFF, 0x00CED1, 0x00FA9A, 0x00FF00, 0x00FF00,
0x00FF7F, 0x00FFFF, 0x00FFFF, 0x191970, 0x1E90FF, 0x20B2AA, 0x228B22,
0x2E8B57, 0x2F4F4F, 0x32CD32, 0x3CB371, 0x40E0D0, 0x4169E1, 0x4682B4,
0x483D8B, 0x48D1CC, 0x4B0082, 0x556B2F, 0x5F9EA0, 0x6495ED, 0x663399,
0x66CDAA, 0x696969, 0x6A5ACD, 0x6B8E23, 0x708090, 0x778899, 0x7B68EE,
0x7CFC00, 0x7F0000, 0x7F007F, 0x7FFF00, 0x7FFFD4, 0x808000, 0x808080,
0x87CEEB, 0x87CEFA, 0x8A2BE2, 0x8B0000, 0x8B008B, 0x8B4513, 0x8FBC8F,
0x90EE90, 0x9370DB, 0x9400D3, 0x98FB98, 0x9932CC, 0x9ACD32, 0xA020F0,
0xA0522D, 0xA52A2A, 0xA9A9A9, 0xADD8E6, 0xADFF2F, 0xAFEEEE, 0xB03060,
0xB0C4DE, 0xB0E0E6, 0xB22222, 0xB8860B, 0xBA55D3, 0xBC8F8F, 0xBDB76B,
0xBEBEBE, 0xC0C0C0, 0xC71585, 0xCD5C5C, 0xCD853F, 0xD2691E, 0xD2B48C,
0xD3D3D3, 0xD8BFD8, 0xDA70D6, 0xDAA520, 0xDB7093, 0xDC143C, 0xDCDCDC,
0xDDA0DD, 0xDEB887, 0xE0FFFF, 0xE6E6FA, 0xE9967A, 0xEE82EE, 0xEEE8AA,
0xF08080, 0xF0E68C, 0xF0F8FF, 0xF0FFF0, 0xF0FFFF, 0xF4A460, 0xF5DEB3,
0xF5F5DC, 0xF5F5F5, 0xF5FFFA, 0xF8F8FF, 0xFA8072, 0xFAEBD7, 0xFAF0E6,
0xFAFAD2, 0xFDF5E6, 0xFF0000, 0xFF00FF, 0xFF00FF, 0xFF1493, 0xFF4500,
0xFF6347, 0xFF69B4, 0xFF7F50, 0xFF8C00, 0xFFA07A, 0xFFA500, 0xFFB6C1,
0xFFC0CB, 0xFFD700, 0xFFDAB9, 0xFFDEAD, 0xFFE4B5, 0xFFE4C4, 0xFFE4E1,
0xFFEBCD, 0xFFEFD5, 0xFFF0F5, 0xFFF5EE, 0xFFF8DC, 0xFFFACD, 0xFFFAF0,
0xFFFAFA, 0xFFFF00, 0xFFFFE0, 0xFFFFF0, 0xFFFFFF
};
static const int NUM_HEX_COLORS = sizeof(HEX_COLORS)/sizeof(uint32_t);
class Nvtx
{
const bool nvtx = false;
const bool enforce_kernel_sync = false;
const char *base, *file;
const uint32_t color = Black;
mutable std::string ascii;
mutable nvtxEventAttributes_t event;
public:
Nvtx() { }
Nvtx(bool enforce_kernel_sync,
const char *FILE, const int LINE, const char *FUNC, uint32_t COLOR):
nvtx(true),
enforce_kernel_sync(enforce_kernel_sync),
base(Strrnchr(FILE,'/', 2)),
file(base ? base + 1 : FILE),
color(COLOR),
ascii(file),
event({})
{
event.version = NVTX_VERSION;
event.size = NVTX_EVENT_ATTRIB_STRUCT_SIZE;
event.colorType = NVTX_COLOR_ARGB;
event.color = HEX_COLORS[color % NUM_HEX_COLORS];
event.messageType = NVTX_MESSAGE_TYPE_ASCII;
ascii += ":";
ascii += std::to_string(LINE);
ascii += ":[";
ascii += FUNC;
ascii += "] ";
}
Nvtx(const char *title, int color = Wheat, bool enforce_kernel_sync = true):
nvtx(true),
enforce_kernel_sync(enforce_kernel_sync),
color(color),
ascii(title),
event({})
{
event.version = NVTX_VERSION;
event.size = NVTX_EVENT_ATTRIB_STRUCT_SIZE;
event.colorType = NVTX_COLOR_ARGB;
event.color = HEX_COLORS[color % NUM_HEX_COLORS];
event.messageType = NVTX_MESSAGE_TYPE_ASCII;
event.message.ascii = ascii.c_str();
nvtxRangePushEx(&event); // push
}
~Nvtx()
{
if (!nvtx) { return; }
if (enforce_kernel_sync)
{
nvtxEventAttributes_t eks = {};
eks.version = NVTX_VERSION;
eks.size = NVTX_EVENT_ATTRIB_STRUCT_SIZE;
eks.category = 0; // user value
eks.colorType = NVTX_COLOR_ARGB;
eks.messageType = NVTX_MESSAGE_TYPE_ASCII;
eks.message.ascii = "Sync";
eks.color = HEX_COLORS[Yellow];
nvtxRangePushEx(&eks);
MFEM_STREAM_SYNC;
nvtxRangePop();
}
nvtxRangePop(); // pop
}
// used through MFEM_NVTX
inline void operator()() const noexcept
{
if (!nvtx) { return; }
event.message.ascii = ascii.c_str();
nvtxRangePushEx(&event); // push
}
template<typename T>
inline void operator()(const T &arg) const noexcept
{
if (!nvtx) { return; }
operator<<(arg);
event.message.ascii = ascii.c_str();
nvtxRangePushEx(&event); // push
}
template<typename T, typename... Args>
inline void operator()(const char *fmt, const T &arg,
Args... args) const noexcept
{
if (!nvtx) { return; }
for (; *fmt != '\0'; fmt++ )
{
if (*fmt == '%')
{
fmt++;
const char c = *fmt;
if (c == 'p') { operator<<(arg); }
if (c == 's' || c == 'd' || c == 'f') { operator<<(arg); }
if (c == 'x' || c == 'X')
{
mfem::out << std::hex;
if (c == 'X') { mfem::out << std::uppercase; }
operator<<(arg);
mfem::out << std::nouppercase << std::dec;
}
if (c == '.')
{
fmt++;
const char c = *fmt;
char num[8] = { 0 };
for (int k = 0; *fmt != '\0'; fmt++, k++)
{
if (*fmt == 'e' || *fmt == 'f') { break; }
if (*fmt < 0x30 || *fmt > 0x39) { break; }
num[k] = *fmt;
}
const int fx = std::atoi(num);
if (c == 'e') { mfem::out << std::scientific; }
if (c == 'f') { mfem::out << std::fixed; }
mfem::out << std::setprecision(fx);
operator<<(arg);
mfem::out << std::setprecision(6);
}
return operator()(fmt + 1, args...);
}
operator<<(*fmt);
}
// should never be here
assert(false);
}
template <typename T>
inline void operator<<(const T &arg) const noexcept
{
if (!nvtx) { return; }
ascii += arg;
}
inline void operator<<(const int &arg) const noexcept
{
if (!nvtx) { return; }
ascii += std::to_string(arg);
}
public:
static const Nvtx Set(const char *FILE, const int LINE, const char *FUNC,
uint32_t COLOR)
{
static bool env_nvtx = false;
static bool env_eks = false;
static bool ini_nvtx = false;
if (!ini_nvtx)
{
env_nvtx = getenv("MFEM_NVTX") != nullptr;
env_eks = getenv("MFEM_EKS") != nullptr;
ini_nvtx = true;
}
return env_nvtx ? Nvtx(env_eks, FILE, LINE, FUNC, COLOR) : Nvtx();
}
private:
inline const char *Strrnchr(const char *s, const unsigned char c, int n)
{
size_t len = strlen(s);
char *p = const_cast<char*>(s) + len - 1;
for (; n; n--,p--,len--)
{
for (; len; p--,len--)
if (*p == c) { break; }
if (!len) { return nullptr; }
if (n == 1) { return p; }
}
return nullptr;
}
};
#ifndef MFEM_NVTX_COLOR
#define MFEM_NVTX_COLOR SeaGreen
#endif
// Helpers for generating unique variable names
#define NVTX_PRIVATE_NAME(name) NVTX_PRIVATE_CONCAT(name, __LINE__)
#define NVTX_PRIVATE_CONCAT(a, b) NVTX_PRIVATE_CONCAT2(a, b)
#define NVTX_PRIVATE_CONCAT2(a, b) a##b
// temporary object which is only alive in the expression
// __PRETTY_FUNCTION__
#define NVTX(...) \
mfem::Nvtx NVTX_PRIVATE_NAME(nvtx) = \
mfem::Nvtx::Set(__FILE__,__LINE__,__FUNCTION__,MFEM_NVTX_COLOR);\
NVTX_PRIVATE_NAME(nvtx).operator()(__VA_ARGS__)
#define MFEM_NVTX NVTX()
} // namespace mfem
#endif // MFEM_NVVP_HPP
+1 -1
View File
@@ -42,7 +42,7 @@ public:
/// Clear the elapsed time on the stopwatch and restart it if it's running.
void Clear();
/// Clear the elapsed time and start the stopwatch.
/// Start the stopwatch. The elapsed time is @b not cleared.
void Start();
/// Stop the stopwatch.
+3 -3
View File
@@ -327,7 +327,7 @@ void EliminationSolver::Mult(const Vector& rhs, Vector& sol) const
krylov->SetMaxIter(max_iter);
krylov->SetRelTol(rel_tol);
krylov->SetAbsTol(abs_tol);
krylov->SetPrintLevel(print_level);
krylov->SetPrintLevel(print_options);
Vector rtilde(rhs.Size());
if (constraint_rhs.Size() > 0)
@@ -447,7 +447,7 @@ void PenaltyConstrainedSolver::Mult(const Vector& b, Vector& x) const
krylov->SetRelTol(rel_tol);
krylov->SetAbsTol(abs_tol);
krylov->SetMaxIter(max_iter);
krylov->SetPrintLevel(print_level);
krylov->SetPrintLevel(print_options);
krylov->Mult(penalized_rhs, x);
final_iter = krylov->GetNumIterations();
final_norm = krylov->GetFinalNorm();
@@ -574,7 +574,7 @@ void SchurConstrainedSolver::LagrangeSystemMult(const Vector& x,
gmres->SetRelTol(rel_tol);
gmres->SetAbsTol(abs_tol);
gmres->SetMaxIter(max_iter);
gmres->SetPrintLevel(print_level);
gmres->SetPrintLevel(print_options);
gmres->SetPreconditioner(
const_cast<BlockDiagonalPreconditioner&>(*block_pc));
+1
View File
@@ -758,6 +758,7 @@ HypreParMatrix::HypreParMatrix(MPI_Comm comm, HYPRE_BigInt glob_size,
// FIXME:
#ifdef HYPRE_BIGINT
diag->HostReadWriteJ();
CopyCSR_J(A->diag, diag->GetJ());
#endif

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