Compare commits

...
Author SHA1 Message Date
Will Pazner cd1485a62f Add some comments 2022-02-02 16:52:25 -08:00
Will Pazner 0ba282bc62 Do BCs on device with device-aware MPI 2022-02-02 16:05:45 -08:00
camierjs 855f53f83b gitignore update 2022-01-26 10:38:09 -08:00
camierjs aee6993f12 Merge master in bps 2022-01-22 08:11:24 -08:00
camierjs 93acff80ff MPI consol reporter fix & setup params 2022-01-22 08:10:58 -08:00
Tzanio Kolev bba2c08025 Merge pull request #2740 from mfem/vsx
vsx128 GNU fix [vsx]
2022-01-20 08:08:21 -08:00
Tzanio Kolev b23a3921bf Merge pull request #2743 from mfem/shadow-examples-dev
Fixing shadow variables in examples [shadow-examples-dev]
2022-01-19 09:56:40 -08:00
Will Pazner e4bcd7c58c Merge pull request #2746 from mfem/shadow-tests-dev
Fixing shadow variables in unit tests [shadow-tests-dev]
2022-01-18 15:08:30 -08:00
Veselin Dobrev 30a3c76325 Merge pull request #2771 from mfem/stopwatch-fix-comment
Fix erroneous comment in StopWatch
2022-01-18 12:12:35 -08:00
Stowell, Mark L 99e1a076ba Switching to ostream named os 2022-01-18 11:15:11 -08:00
Will Pazner 1ae61b0ada Merge remote-tracking branch 'origin/master' into shadow-tests-dev 2022-01-18 10:29:05 -08:00
Tzanio Kolev f0398ff391 Merge pull request #2732 from mfem/shadow-tmop-dev
Fixing shadowed variables in tmop files [shadow-tmop-dev]
2022-01-18 10:26:08 -08:00
Tzanio Kolev df1deca20e Merge pull request #2736 from mfem/shadow-gen-dev
Fixing shadow variables in general classes [shadow-gen-dev]
2022-01-17 17:53:37 -08:00
Tzanio Kolev d1b79a7fc3 Merge pull request #2744 from mfem/shadow-miniapps-dev
Fixing shadow variables in miniapps [shadow-miniapps-dev]
2022-01-17 17:53:00 -08:00
Tzanio Kolev 426a77be6c Merge pull request #2754 from mfem/shifted-bug-fix
Shifted bug fix
2022-01-17 17:52:17 -08:00
Will Pazner 20dced51fd Fix erroneous comment in StopWatch 2022-01-14 17:59:13 -08:00
Vladimir Z Tomov 00c4f59c76 Minor. 2022-01-13 18:47:38 -08:00
Ketan Mittal 5a6e0dad2e minor 2022-01-11 15:56:56 -08:00
Ketan Mittal 774794595b move temp_elvect->elvect outside the loop 2022-01-11 13:56:42 -08:00
camierjs cfa82dccc0 In device.?pp, use device_id for shadowed variable and switch out to os 2022-01-11 11:09:12 -08:00
camierjs 30803b8f00 Rename Memory<T>::New input arguments 2022-01-11 11:05:13 -08:00
Nabil Atallah 92112fccaa changed '=' sign to '+=' in line 644 otherwise at every integration point the values get overwritten 2022-01-05 16:24:51 -08:00
Nabil Atallah 70bd112ea4 added the sbm_aux.hpp file to the CMakeLists.txt and also added it to line 56 since the object files depend on it 2022-01-05 13:59:31 -08:00
Nabil Atallah 6ba7e82f91 Merge branch 'master' of https://github.com/mfem/mfem
Fixed a bug in the sbm_solver.cpp file of the shifted miniapp.
2022-01-05 13:38:44 -08:00
Nabil Atallah ba83609892 reset the temp_elvect vector to zero at the beginning of the loop over each integration point in sbm_solver.cpp belonging to the shifted miniapp, also fixed a typo in the comments related to the sign of the SBM penalty term 2022-01-05 11:28:49 -08:00
Stowell, Mark L 74fc2de695 Adjusting names in function declarations 2022-01-04 17:34:47 -08:00
camierjs 13567886cd Params & remove inner_cg 2021-12-30 17:23:47 -08:00
Stowell, Mark L df6e73654a Fixing shadow variables in autodiff miniapps 2021-12-30 11:33:21 -08:00
Stowell, Mark L a07fc07206 Changes suggested by @camierjs 2021-12-30 11:04:44 -08:00
camierjs 9b164c8122 Device run fix & params tuning 2021-12-29 17:21:55 -08:00
camierjs 344575476a LOR assembly parallel columns elimination fix & NodalInterpolation vector un-static 2021-12-29 15:11:11 -08:00
camierjs 17d11ffde8 AppVeyor constant evaluation expression 2021-12-29 13:50:26 -08:00
camierjs 4a0a785a22 Remove restricts for AppVeyor 2021-12-29 13:23:55 -08:00
camierjs 0d22cbe482 AppVeyor fix 2021-12-29 12:54:49 -08:00
camierjs f922849049 Remove MFEM_UNROLL to avoid optimizer message it was unable to perform the requested transformation 2021-12-29 12:37:41 -08:00
camierjs 0705abaa17 Remove CuSparse init hidden in Dof_TrueDof_Matrix 2021-12-29 12:04:59 -08:00
Stowell, Mark L 5e672f26bc Removing unneeded function after consulting @camierjs 2021-12-29 10:24:18 -08:00
Vladimir Z Tomov f3f37e8e5a Minor. 2021-12-28 15:19:24 -08:00
camierjs be6f6823a0 nxyz partitioning & GLVis output 2021-12-28 12:01:34 -08:00
Stowell, Mark L 475d3d8102 Fixing shadow variables in unit tests 2021-12-28 11:42:51 -08:00
Veselin Dobrev 0f239c22e0 Merge pull request #2730 from mfem/ScaledOperatorFix
Fix size of ScaledOperator and add MultTranspose
2021-12-28 10:28:17 -08:00
Tzanio Kolev 783f0e0304 Merge pull request #2709 from mfem/new-compilers-warnings-fix
Fix some compiler warnings from new clang and gcc versions
2021-12-28 09:58:40 -08:00
Stowell, Mark L dd03eb6d79 Adding missing shadow vdofs 2021-12-27 14:38:20 -08:00
Stowell, Mark L 0f4bd5925a Fixing shadow variables in miniapps 2021-12-27 12:46:22 -08:00
Stowell, Mark L ca3e2b3098 make style 2021-12-27 10:42:01 -08:00
Stowell, Mark L b14bd1f237 Fixing shadow variables in examples 2021-12-27 10:41:09 -08:00
camierjs 1bb502acb5 Fix partitioning & tune parameters 2021-12-24 13:45:03 -08:00
camierjs 3cd073df96 cmake files fix 2021-12-23 16:49:02 -08:00
camierjs 6032edcb0f Warnings being treated as errors 2021-12-23 16:23:16 -08:00
Stowell, Mark L fa25a70da6 Fixing shadow variables in general classes 2021-12-23 16:21:31 -08:00
camierjs e9b9152f59 vsx128 fix 2021-12-23 16:20:05 -08:00
camierjs d538a0e936 LOR warnings 2021-12-23 16:14:19 -08:00
camierjs 189e4f2bd1 Warnings & documentation 2021-12-23 16:08:10 -08:00
camierjs 123cfee0d0 Add <limits.h> 2021-12-23 14:16:40 -08:00
camierjs 52328a7051 Cleanup, Sync & serial support 2021-12-23 14:06:48 -08:00
camierjs 9584b34d74 Add missing cstring header 2021-12-23 10:10:47 -08:00
Stowell, Mark L bd7527e922 Swapping leading underscores for trailing 2021-12-23 09:49:01 -08:00
Stowell, Mark L 60a1d3d1d4 Fixing shadowed variables in tmop files 2021-12-22 15:46:33 -08:00
camierjs e68b5a8200 Add fem/lor_assembly_ni3.cpp and use GPU kernels for BC elimination 2021-12-22 15:17:39 -08:00
Syun'ichi Shiraiwa 07ba5bd336 make style 2021-12-21 21:55:09 -05:00
Syun'ichi Shiraiwa 4027c86797 fix size of ScaledOperator and add MultTranspose 2021-12-21 21:52:54 -05:00
Tzanio Kolev 8300a563ae Merge pull request #2722 from mfem/pncmesh-getessvdof-fix
Fix `ParFiniteElementSpace::GetEssentialVDofs()` for non-conforming meshes
2021-12-21 08:36:14 -08:00
Tzanio Kolev 753f351934 Merge pull request #2519 from mfem/bicgstab-print-lvl-fix
Modernize print level semantics
2021-12-21 07:47:49 -08:00
Veselin Dobrev 9310e05a15 Override appropriately the SetPrintLevel methods in class KINSolver 2021-12-20 16:20:27 -08:00
termi-official 985fff881c Treat 'no convergence' as a warning. 2021-12-20 21:33:54 +01:00
termi-official 5b841fb239 Remove deprecation attribute from IterativeSolver::print_level together with all of its support code. 2021-12-20 20:53:59 +01:00
camierjs 1203651bfb Add MFEM_UNROLL foldback 2021-12-19 18:23:20 -08:00
Tzanio Kolev 6f7b29ac14 Merge branch 'master' into bicgstab-print-lvl-fix 2021-12-19 17:58:19 -08:00
Tzanio Kolev 589d2775cb Merge pull request #2629 from mfem/simd-unary-plus
Add unary + to AutoSIMD
2021-12-19 12:14:36 -08:00
camierjs b7835fa392 Merge master in bps 2021-12-19 09:20:25 -08:00
camierjs ac2e4838d1 Add fine BoomerAMG 2021-12-17 09:24:18 -08:00
Tzanio Kolev 8a565cad67 Merge pull request #2677 from mfem/jacobi-abs-diag
Positive diagonal in Jacobi smoothers
2021-12-16 17:58:31 -08:00
Tzanio Kolev 5f9ee51d40 Merge pull request #2684 from mfem/tmop-renameandrefactor
TMOP clean up
2021-12-16 17:57:45 -08:00
Tzanio Kolev acb85daaff Merge pull request #2656 from mfem/lor-gridfunction-coeff
GridFunction coefficients that work with LOR preconditioning
2021-12-16 17:57:04 -08:00
Tzanio Kolev 36ec075849 Merge pull request #2702 from mfem/add-code-of-conduct
MFEM Code of Conduct
2021-12-16 14:12:31 -08:00
camierjs 5c5c8aa645 Switched to sides 2021-12-16 12:31:35 -08:00
Veselin Dobrev 8b0262bd29 Fix an issue where some boundary dofs are not properly marked
as essential in ParFiniteElementSpace::GetEssentialVDofs() when
using a parallel non-conforming mesh.

This should address GitHub issue #2559.
2021-12-16 02:53:09 -08:00
Tzanio d9a18088a2 Updated to Contributor Covenant Code 2.1 2021-12-15 08:02:04 -08:00
Tzanio KolevandVeselin Dobrev 830ea90cf8 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:56 -08:00
Tzanio KolevandVeselin Dobrev 9377a43d28 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:51 -08:00
Tzanio KolevandVeselin Dobrev 87cd94a1fe Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:44 -08:00
Tzanio KolevandVeselin Dobrev 1aa1e0633b Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:36 -08:00
Tzanio KolevandVeselin Dobrev 57f3462a00 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:31 -08:00
Tzanio KolevandVeselin Dobrev 186f65ccc1 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:23 -08:00
Tzanio KolevandVeselin Dobrev 8e11743052 Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:16 -08:00
Tzanio KolevandVeselin Dobrev 649163a36f Update CODE_OF_CONDUCT.md
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2021-12-15 07:28:09 -08:00
Veselin Dobrev a58567695e Fix an error when building with HIP which may also be causing
problems with CUDA.

In OperatorJacobiSmoother, use absolute value of diagonal, if
requested, during setup instead of during action.

A few tweaks in SparseMatrix::Jacobi and SparseMatrix::DiagScale.

For the GitLab CI on Lassen, disable ATS.
2021-12-14 22:37:53 -08:00
Tzanio Kolev 53c04ef171 Update CONTRIBUTING.md 2021-12-14 21:52:00 -08:00
Veselin Dobrev 2c09747196 Fix some compiler warnings from new clang and gcc versions 2021-12-14 21:49:31 -08:00
Tzanio e9feadbbfc Small updates 2021-12-14 08:27:27 -08:00
Tzanio 81dceb94b6 Adressing comments 2021-12-13 13:21:20 -08:00
Tzanio Kolev 39022bce0f Merge pull request #2698 from mfem/nvwarnings
Remove nvcc warnings about partially overridden virtual functions [nvwarnings]
2021-12-13 13:13:38 -08:00
Tzanio 15242ffcf6 Editorial adjustments in CHANGELOG. 2021-12-13 13:08:53 -08:00
Will Pazner 9a5cafafc6 Merge remote-tracking branch 'origin/master' into simd-unary-plus 2021-12-13 11:37:29 -08:00
Will Pazner 11275857a3 Update CHANGELOG 2021-12-13 11:37:18 -08:00
Will Pazner d06a528958 Merge remote-tracking branch 'origin/master' into lor-gridfunction-coeff 2021-12-13 10:49:50 -08:00
Will Pazner f54b8bd6d8 Update CHANGELOG to mention LOR GridFunction coefficient support 2021-12-13 10:49:39 -08:00
Will Pazner 239c672988 Merge pull request #2655 from mfem/pmesh-mem-leak-fix
Fix Memory leaks in PMesh
2021-12-13 10:40:51 -08:00
camierjs 3bf4235280 Faster transfers 2021-12-12 17:23:55 -08:00
Vladimir Z Tomov aabf4ce84d Fixed a wrong coefficient in the adaptive limiting. 2021-12-12 16:27:40 -08:00
camierjs f31abd53c4 Diffusion fix, hyper-parameters tuning 2021-12-10 17:48:05 -08:00
camierjs 40e80d6861 Fast transfers and diffusion kernels 2021-12-10 13:51:23 -08:00
Tzanio Kolev f95c2e156b Create CODE_OF_CONDUCT.md 2021-12-10 12:11:10 -08:00
camierjs e4de905322 Merge branch 'amd' into bps 2021-12-09 11:08:20 -08:00
camierjs 8cf20ff650 nvtx cleanup 2021-12-09 10:10:42 -08:00
camierjs 51e634777d Benchmark context factorize and setup time fix 2021-12-09 09:19:12 -08:00
camierjs faf9821920 All tests: LOR, GPU, MPI & Wavelets 2021-12-08 18:42:01 -08:00
camierjs 82c1fe1f5a Fix one coeff 2021-12-08 14:09:48 -08:00
camierjs 4f97798591 Add fine LOR batch GPU 2021-12-08 13:16:07 -08:00
camierjs f264e3ff29 Add LOR batched GPU 2021-12-08 12:00:03 -08:00
camierjs 7e283840dc Merge branch 'lor-batched-gpu' into bps 2021-12-08 11:17:48 -08:00
camierjs 3a82eaf76f Bring linext and switch b to use FULL LinearAssemblyLevel 2021-12-08 11:13:28 -08:00
camierjs 8e03705911 Merge branch 'linext' into bps 2021-12-08 11:03:29 -08:00
camierjs 99e39c03c3 nvtx setup 2021-12-08 11:00:58 -08:00
camierjs 80fa63cb64 Remove nvcc warnings about partially overridden virtual functions 2021-12-08 10:46:29 -08:00
camierjs 4b5f578a99 Merge master in lor-batched-gpu 2021-12-08 09:47:51 -08:00
camierjs 8dbe09906b Switch to nvtx header 2021-12-08 09:47:25 -08:00
camierjs c9935c4c98 Merge master in amd 2021-12-08 08:12:40 -08:00
camierjs 1e39adaf0d Merge master in bps 2021-12-08 08:12:22 -08:00
camierjs e70ccc2d1e Merge master in linext 2021-12-08 08:06:09 -08:00
Veselin Dobrev 7e8d8b1d55 Merge pull request #2592 from mfem/pw-coefs-dev
Adding Piecewise coefficient classes [pw-coefs-dev]
2021-12-07 17:39:34 -08:00
Stowell, Mark L d5c48cb3cc Improving comment for new classes 2021-12-07 13:54:45 -08:00
Veselin Dobrev acb9cfa321 Merge pull request #2631 from white238/task/white238/guard_add_test
Guard add_test calls with MFEM_ENABLE_TESTING
2021-12-07 12:49:58 -08:00
Veselin Dobrev 97796f0beb Merge branch 'master' into bicgstab-print-lvl-fix
Resolved conflict:
   CHANGELOG
2021-12-07 12:44:31 -08:00
Tzanio Kolev 7ef0a77597 Merge pull request #2668 from mfem/refine-operator-bug-fix
Bug-fix: Adding appropriate doftransformations for high-order ND tet elements in RefineOperator/PRefineOperator Mult and MultTranspose
2021-12-05 19:35:37 -08:00
Will Pazner c1562552f1 Make performance ex1 and ex1p templated on dimension 2021-12-02 10:17:06 -08:00
termi-official a44a8640d1 Change output behavior of warnings to mfem::out for consistency and update PrintLevel docs with the associated stream. 2021-12-01 17:24:26 +01:00
camierjs 6caccacbec BC outside the kernel for parallel/sequential 2021-11-30 18:09:07 -08:00
camierjs b64d57c06e Parallel cuda through RAP 2021-11-30 17:22:22 -08:00
camierjs 67347ebade Merge master in lor-batched-gpu 2021-11-30 15:53:42 -08:00
camierjs fdb5d7d627 Parallel debug device 2021-11-30 15:53:26 -08:00
Tzanio Kolev 539f663fe6 Merge pull request #2570 from mdeuse/complex_fem-improvement
Added AddDomainIntegrator with marker for (Par)ComplexLinearForm and (Par)SesquilinearForm
2021-11-30 14:21:05 -08:00
Ketan Mittal 001f1a8b79 add missing PC 3D metrics 2021-11-30 13:59:26 -08:00
Ketan Mittal 92e42d4332 fix spacing etc 2021-11-30 12:45:19 -08:00
mdeuse 104abd56e1 Merge branch 'master' into complex_fem-improvement 2021-11-30 21:25:29 +01:00
Socratis Petrides 6a86ca8d49 typo 2021-11-30 11:43:47 -08:00
Socratis Petrides c08b31c078 Merge branch 'master' into refine-operator-bug-fix 2021-11-30 11:38:22 -08:00
Socratis Petrides 54e78ee991 removing test from examples and adding ND and RT case in trasfer unit tests 2021-11-30 11:37:49 -08:00
Will Pazner 68b4445893 Merge remote-tracking branch 'origin/master' into complex_fem-improvement 2021-11-30 11:04:45 -08:00
Ketan Mittal 9c7150c93e Merge branch 'master' of https://github.com/mfem/mfem into tmop-renameandrefactor 2021-11-30 10:24:14 -08:00
Ketan Mittal 19a2ad26e1 minor 2021-11-30 10:24:12 -08:00
Tzanio Kolev de9110300d Merge pull request #2383 from mfem/pr_autodiff
AD capabilities in mfem - autodiff
2021-11-30 09:59:27 -08:00
Will Pazner cbff87a616 Merge pull request #2639 from mfem/hyperparvec-move-dev
Add move constructors/assignment for Vector and HypreParVector [hypreparvec-move-dev]
2021-11-30 09:48:10 -08:00
camierjs 84c6ffc623 Back to Legacy/Full/Deviced & lor_solvers w/ precond 2021-11-29 19:05:05 -08:00
camierjs d1068e08df Merge master in lor-batched-gpu 2021-11-29 11:45:05 -08:00
camierjs d2ae9d12c2 bench ess dofs fix 2021-11-29 11:44:47 -08:00
Veselin Dobrev 568562a7d5 Restore a comment that was deleted unintentionallly. 2021-11-26 22:14:42 -08:00
Veselin Dobrev aa8be1b59c In class IterativeSolver, silence the depracation warnings for
`print_level` in a way that works for both Clang and GCC.
2021-11-26 21:34:33 -08:00
Veselin Dobrev 85a79cbea5 Try to suppress deprecation warning with GCC from the
`IterativeSolver` constructors.
2021-11-26 20:17:19 -08:00
Veselin Dobrev 3bf7e07457 Tweak the Doxygen documentation for class IterativeSolver.
Suppress deprecation warnings only when modifying the `print_level`
data member of class `IterativeSolver`.
2021-11-26 20:05:44 -08:00
Vladimir Z Tomov c94cd73dd1 empty line. 2021-11-26 16:02:27 -08:00
Vladimir Z Tomov ff427a04a6 Minor. 2021-11-26 16:01:41 -08:00
Vladimir Z Tomov 2d10dd0abe Options to use abs values of the diagonal in OperatorJacobi, DSmoother. 2021-11-26 15:49:40 -08:00
termi-official a53353776d Update convergence criterion docs. 2021-11-26 17:08:39 +01:00
termi-official 2f1c03796a Adapt tmop print policy. 2021-11-26 16:39:06 +01:00
termi-official 199d19c195 Add documentation about warning suppression in solver. 2021-11-26 16:28:32 +01:00
blaz 139ce00846 new .gitignore 2021-11-24 22:11:45 -08:00
blaz 465459bc94 new .gitignore 2021-11-24 21:54:58 -08:00
blaz 0487599b56 .gitignore 2021-11-24 21:38:05 -08:00
blaz a85687d0cb move caliper configuration 2021-11-24 21:14:07 -08:00
Will Pazner eb6ef4a537 Minor 2021-11-24 17:47:27 -08:00
blaz 03b9eb4b53 style 2021-11-24 17:45:20 -08:00
blaz 293acb99d9 small amendments 2021-11-24 17:32:44 -08:00
Will Pazner af7c58aa0e Minor solver output consistency fixes 2021-11-24 17:20:31 -08:00
Will Pazner d4f404cf74 Don't repeat last iteration in GMRES output 2021-11-24 10:53:53 -08:00
Will Pazner 2080fde2a1 Small changes to reduce diffs with old solver output 2021-11-24 10:44:38 -08:00
Will Pazner 4d4a04b222 Parallel LOR assembly using RAP 2021-11-24 09:55:35 -08:00
Will Pazner c80a15e209 Clean LORBase::AssembleSystem_ 2021-11-24 09:49:55 -08:00
Will Pazner 4682e5f724 Remove legacy batched LOR 2021-11-24 09:48:58 -08:00
Veselin Dobrev edb69e0180 Add missing newline at the end of a file 2021-11-22 22:10:52 -08:00
camierjs cc0668cf81 Add support for linear form extension Update and use full assembly in example 6 and 6p. 2021-11-22 10:52:57 -08:00
Josh Essman 8c5e3c4e08 Merge branch 'master' into hyperparvec-move-dev 2021-11-22 10:25:05 -06:00
Josh Essman 620b2590a3 tests: make sure that moved-from hpvec is empty 2021-11-22 10:24:10 -06:00
Will Pazner 7ff5874904 Typo 2021-11-21 13:30:50 -08:00
Will Pazner 757ee1a24a Merge remote-tracking branch 'origin/master' into lor-gridfunction-coeff 2021-11-20 13:13:17 -08:00
Will Pazner 861c7c4a04 Add unit tests for GridFunction coefficients on refined meshes 2021-11-20 13:13:16 -08:00
camierjs 0d968ca140 Initial import 2021-11-19 15:01:14 -08:00
Socratis Petrides ad96dc5c61 adding checks for TensorProductElementPRefineOperator which is not implemented for ND/RT 2021-11-18 11:17:35 -08:00
Socratis Petrides de58c7ae08 minor 2021-11-17 18:54:24 -08:00
Socratis Petrides e9412379ce adding CG instead of UMFPack in the test. Adding quantitative error measure 2021-11-17 18:53:54 -08:00
Socratis Petrides 330b94fd41 Additional unit tests for InvTransformDual 2021-11-17 17:48:37 -08:00
Socratis Petrides 15cc865fba Adding DofTransformations in PrefinementOperator::Mult/MultTranspose 2021-11-17 17:47:57 -08:00
Socratis Petrides f60e6a6ac3 Bug fix RefinementOperator::MultTranspose 2021-11-17 17:47:19 -08:00
Socratis Petrides 75ae4e2c9b adding DofTransformation::InvTransformDual 2021-11-17 17:44:16 -08:00
camierjs 48b8dab175 VectorDomainLFGradIntegrator spatial terms documentation 2021-11-17 16:17:23 -08:00
camierjs 388d585c91 Typo 2021-11-17 14:37:42 -08:00
camierjs ea37459526 Use Device::IsEnabled() to enable LinearAssemblyLevel::FULL 2021-11-17 14:31:06 -08:00
camierjs 38ae653116 Use GeometricFactors::DETERMINANTS instead of recomputing 2021-11-17 14:22:51 -08:00
Socratis Petrides f6c10448f2 small bug-fix refine-operatorr::MultTranspose() 2021-11-17 14:10:49 -08:00
camierjs 806ebf7713 Back to vdim fix 2021-11-17 13:18:10 -08:00
camierjs eed250bfee Add markers to the tests 2021-11-17 11:46:16 -08:00
camierjs 652243cfbc VectorDomainLFGradIntegrator SpaceDimension fix & documentation 2021-11-17 08:20:54 -08:00
camierjs 99a9c54077 CHANGELOG & CONTRIBUTING.md 2021-11-16 18:26:48 -08:00
camierjs ea4b7c7113 AppVeyor changes 2021-11-16 17:56:13 -08:00
camierjs ad70f83558 Simplify and use scratch mem for all kernels 2021-11-16 17:42:21 -08:00
camierjs 26971f1177 Starting to use device scratch memory 2021-11-16 13:11:28 -08:00
camierjs e3967b64ae VectorDomainLFIntegratorAssemble2D with global mem fallback 2021-11-16 11:28:41 -08:00
camierjs d1a39e13de Update with latest LinearFormExtTest API 2021-11-16 10:17:52 -08:00
camierjs 74eb448ed5 Remove extra ‘;’ 2021-11-16 10:13:14 -08:00
camierjs 9ea6772507 Simplify 2021-11-16 10:10:05 -08:00
camierjs 26e9b3282a Factorize into header files 2021-11-16 08:42:22 -08:00
camierjs 0d87cf1cfe Ordering tests 2021-11-15 18:27:10 -08:00
camierjs 0de1b5a0c5 Simplify fem/lininteg_vector_domain_grad 2021-11-15 15:06:05 -08:00
camierjs e2db1ac180 Simplify fem/lininteg_domain_grad 2021-11-15 14:08:16 -08:00
camierjs d4d8beb7fb Simplify fem/lininteg_domain 2021-11-15 13:10:03 -08:00
camierjs a3685c0b20 Include tests revert 2021-11-15 11:34:34 -08:00
camierjs bbd190bd10 Include fix 2021-11-15 11:22:14 -08:00
camierjs 1d88c9365f Factorize LinearFormExtTest between tests unit and benchmarks 2021-11-15 11:10:23 -08:00
camierjs 2fe125163e Remove benchmarks from tests 2021-11-14 17:39:50 -08:00
Tzanio 247818aaa6 More styling 2021-11-14 12:36:43 -08:00
Tzanio e5e4a7e753 Merge branch 'master' into pr_autodiff 2021-11-14 12:08:07 -08:00
Tzanio 20cb878f5f Styling 2021-11-14 12:07:15 -08:00
Tzanio 4cc03b4238 Small adjustments 2021-11-14 11:54:02 -08:00
camierjs dc213a84fc Add tests/unit/fem/test_linearform_ext 2021-11-14 09:32:32 -08:00
camierjs 75d7c7056d Merge master in linext 2021-11-13 12:35:38 -08:00
camierjs 647b400508 Revert change line in fem/lininteg.cpp 2021-11-13 12:35:17 -08:00
camierjs c69858abde Revert xbench and fix tests benchmarks 2021-11-13 12:27:30 -08:00
Tzanio Kolev 0843a87d79 Merge pull request #2661 from mfem/gitlab-disable-rebaseline
In Gitlab CI, disable the `rebaseline` job for `master`
2021-11-12 08:11:57 -08:00
Tzanio Kolev 9c34c32ae6 Merge pull request #2652 from mfem/hypre-update
Update with latest changes in hypre
2021-11-12 08:10:42 -08:00
Tzanio Kolev 9a12cedd5e Merge pull request #2358 from mfem/yohann/mem/min-default-constr
Use `Reset()` in default constructor of `Memory<T>`.
2021-11-11 16:21:12 -08:00
Tzanio Kolev f9f3f11818 Merge pull request #2638 from mfem/diffusion-kernel-dev
More threads/block for SmemPADiffusionApply3D
2021-11-11 16:20:44 -08:00
Tzanio Kolev b2df200f3d Merge pull request #2659 from mfem/deps-flags
Allow for customizing compiler flags for generating dependencies
2021-11-11 15:39:52 -08:00
Veselin Dobrev 6d102971c9 In Gitlab CI, disable the rebaseline job for 'master' 2021-11-11 14:28:49 -08:00
Victor A. P. Magri ba1e213c19 Add check on hypre version 2021-11-11 11:05:03 -08:00
Will Pazner acbe45ea91 Allow for customizing compiler flags for generating dependencies
On Mac, by default, add the flag -Wno-unused-command-line-argument
2021-11-10 14:34:52 -08:00
Tzanio 0cc104331c Merge branch 'master' into yohann/mem/min-default-constr 2021-11-10 12:52:15 -08:00
Tzanio Kolev d7e87fda54 Merge pull request #2366 from xjrc/ciurej/feature/conduit-data-collection-adjsets
extend `ConduitDataCollection` to support `adjsets` exporting
2021-11-10 11:21:12 -08:00
camierjs 6423829b59 Benchmarks mockup 2021-11-09 18:43:33 -08:00
Will Pazner 60b5110031 Allow the same GridFunctionCoefficient (and related classes) to work on both coarse and refined meshes
Useful for LOR preconditioning with GridFunction coefficients. The same
Coefficient can be used on both the coarse and refined mesh.
2021-11-09 16:53:31 -08:00
camierjs b9a2344979 Turn mfes into FiniteElementSpace 2021-11-09 16:34:16 -08:00
camierjs c037eab442 tests/benchmarks/makefile fix 2021-11-09 16:24:31 -08:00
Stowell, Mark L f58ad62b48 Adding new unit test to cmake file 2021-11-09 16:14:10 -08:00
Will Pazner fe08c6bd36 Add mesh data member to ElementTransformation 2021-11-09 15:55:36 -08:00
Tom Stitt 977e978ad7 fix one more leak 2021-11-09 15:50:22 -08:00
camierjs 5e093c603b Rename to FullLinearFormExtension 2021-11-09 15:49:31 -08:00
camierjs 4721fa8494 Add tests/benchmarks as tests subdir 2021-11-09 15:38:05 -08:00
Stowell, Mark L 64dd0fc417 Add unit tests for piecewise coefficients 2021-11-09 15:31:23 -08:00
Stowell, Mark L 2607e5fd98 Adding methods to remove entries from piecewise coefficients 2021-11-09 15:30:45 -08:00
Stowell, Mark L f569c190b6 Renaming AddCoefficient methods as UpdateCoefficient 2021-11-09 15:30:21 -08:00
camierjs aa517bd1d9 Merge master in linext 2021-11-09 15:27:26 -08:00
camierjs ded6e7db3d Cleanup 2021-11-09 15:27:18 -08:00
camierjs 5c2d4b72e2 Forwarding changes for vdim layout 2021-11-09 14:37:29 -08:00
Josh Essman bd1dbd3754 refactor: add CreateCompatibleVector method to HypreParVector 2021-11-09 15:45:39 -06:00
Tom Stitt db43873b7d delete face_nbr_el_to_face in ParMesh::Destroy 2021-11-09 13:43:48 -08:00
Stowell, Mark L 131f8cc308 Switching to "const" variable to aid compiler optimizations 2021-11-09 12:07:41 -08:00
Stowell, Mark L 601a780a11 Switching to MFEM_VERIFY in initializers 2021-11-09 12:07:11 -08:00
Stowell, Mark L 23be84b089 Fixing typos (thanks @dylan-copeland!) 2021-11-09 12:06:26 -08:00
camierjs 541bfa5ddd Merge master in lor-batched-gpu 2021-11-09 11:24:12 -08:00
camierjs eab1c751f1 Cleanup and add back orders up to 16 2021-11-09 11:00:06 -08:00
camierjs 1a09a674bc Remove intermediate Q vector 2021-11-09 09:59:58 -08:00
camierjs f3661ed318 Add LORRestriction & Cleanup 2021-11-09 09:34:39 -08:00
Tzanio Kolev d6924d1b3f Merge pull request #2649 from mfem/gh-actions-fix
Small fix in Github actions
2021-11-08 20:11:38 -08:00
camierjs 8c44327155 Update with 'All' tests 2021-11-08 17:37:52 -08:00
Victor A. P. Magri 7a6758a53b Update prepocessor macros 2021-11-08 15:27:06 -08:00
Josh Essman 143b0378e5 cleanup: remove redundant code 2021-11-08 17:11:01 -06:00
Victor A. P. Magri 39b2f27dc2 Merge branch 'master' into hypre-update 2021-11-08 14:50:15 -08:00
Tzanio f9e9f5b22e minor 2021-11-08 10:36:31 -08:00
Cyrus Harrison 882883a650 Update CHANGELOG 2021-11-08 10:35:58 -08:00
Tzanio Kolev 2519a91d01 Merge pull request #2645 from mfem/omp-macos
Include `omp` header on macOS [omp-macos]
2021-11-08 07:39:10 -08:00
Josh Essman 12cc340afb cleanup: apply suggestions from @pazner 2021-11-08 08:08:30 -06:00
camierjs c21bf4ae13 Cleanup 2021-11-07 10:11:38 -08:00
camierjs 9c8a6b6029 Merge master in lor-batched-gpu 2021-11-07 08:24:18 -08:00
camierjs 404d7bda1e Merge master in amd 2021-11-07 07:58:03 -08:00
Veselin Dobrev 88a190e034 In Github CI, remove testing change 'v2.0-tweak' -> 'v2.0' 2021-11-06 18:51:36 -07:00
Veselin Dobrev 9f64008a55 Fix the 'gitignore' github action.
Test with the external github action (remove before merge):
   mfem/github-actions/build-mfem@v2.0-tweak
2021-11-06 17:30:26 -07:00
Tzanio Kolev 7127265fde Merge pull request #2634 from mfem/gitlab-ci-updates
Gitlab CI updates
2021-11-06 15:57:22 -07:00
camierjs 32a6d747d0 Add sweeping CEED benchmarks and tex file 2021-11-06 15:11:36 -07:00
camierjs 9f0c12aa3b Style 2021-11-06 10:05:54 -07:00
camierjs 695997c8f8 Merge master in amd 2021-11-06 10:03:16 -07:00
mdeuse f6f702c522 Minor, updated comment 2021-11-06 14:48:56 +01:00
camierjs 67af62e17b Propagate VectorDomainLFGradIntegrator to device kernels 2021-11-05 18:27:48 -07:00
Will Pazner 6eb59dc335 Batched LOR: read vertices directly from nodes 2021-11-05 16:50:05 -07:00
camierjs f5b801ba4c Merge master in linext 2021-11-05 15:00:56 -07:00
camierjs d1b94414ef Update 2021-11-05 14:47:33 -07:00
Veselin Dobrev 29fc4c45b6 In Gitlab CI, apply another set of tweaks 2021-11-05 12:16:09 -07:00
Veselin Dobrev f6f802e0cd In Gitlab CI, test another tweak 2021-11-05 11:26:22 -07:00
Tobias Duswald 0ccc63af04 Include omp headers on macOS 2021-11-05 08:43:30 +01:00
Veselin Dobrev 2ec5efc7d5 In Gitlab CI, in sub-pipeline definitions, explicitly pass
some global variables
2021-11-04 20:37:10 -07:00
Veselin Dobrev c8a8ab5cba In Gitlab CI, attempt to explicitly inherit global variables
in the sub-pipelines
2021-11-04 20:21:35 -07:00
Veselin Dobrev aeac01c130 In Gitlab CI, add some debug "echo" commands 2021-11-04 19:15:29 -07:00
Veselin Dobrev a25c9c575b In Gitlab CI, move the definitions of some global variables from
.gitlab/configs/common.yml to .gitlab-ci.yml
2021-11-04 18:48:38 -07:00
camierjs ca5773a744 Fix static Array error 2021-11-04 18:05:09 -07:00
Will Pazner 15ebd111ee Add FA comparison. Rename Standard to Legacy 2021-11-04 17:25:51 -07:00
Will Pazner 2900a6ecd0 Remove testing data_dir symlink if it exists 2021-11-04 16:25:17 -07:00
Will Pazner 134780da77 Try to fix hipcc errors in shifted miniapp 2021-11-04 12:37:05 -07:00
Josh Essman c85f81f9b4 fix: update hypreparvec copy ctor to copy local data 2021-11-04 12:22:25 -05:00
Josh Essman 72331717c7 tests: add tests for new functionality and fix other hypreparvec test 2021-11-04 10:15:23 -05:00
Josh Essman e96e88d543 feat: add vector move ctor/assignment 2021-11-04 09:01:28 -05:00
Veselin Dobrev a0172dfeb3 In Gitlab CI, remove some debug output 2021-11-03 21:42:47 -07:00
Tom Stitt 2efaaaaffa remove added blank lines 2021-11-03 17:07:12 -07:00
Tom Stitt 70422ccf14 switch threading order 2021-11-03 17:04:57 -07:00
camierjs f9b27068c5 Cleanup 2021-11-03 16:59:58 -07:00
Tom Stitt 716df18263 Merge remote-tracking branch 'origin/master' into diffusion-kernel-dev 2021-11-03 16:23:50 -07:00
camierjs d12aefb41b Fused geometric factors 2021-11-03 16:10:37 -07:00
Josh Essman 2337137f33 feat: add move constructor for hypreparvec 2021-11-03 17:31:19 -05:00
camierjs 471aeab0b7 With inner back 2021-11-03 11:56:08 -07:00
camierjs 55ab354c22 With local Jacobians 2021-11-03 11:43:53 -07:00
camierjs 7dbbd99737 Local col_ptr 2021-11-03 10:11:10 -07:00
camierjs 5a18e9be86 Before removing col_ptr 2021-11-03 09:40:58 -07:00
camierjs b0c478f722 Inner threads for Vji 2021-11-03 09:30:48 -07:00
camierjs b1bc6e99a9 Update 2021-11-03 08:52:51 -07:00
Veselin Dobrev 3f036b943e Add a new Gitlab CI file forgotten in the previous commit 2021-11-03 02:32:28 -07:00
Veselin Dobrev 5565b5066f Update Gitlab CI to fix some issues:
- Use a single (per user) clone of the internal MFEM/autotests repo
- Use a single (per user) clone of the Github MFEM/data repo
- Properly set the location for the pipeline-common temporary directory,
  BUILD_ROOT; add a cleanup step for BUILD_ROOT
- Various other small tweaks and additions
2021-11-03 02:15:58 -07:00
camierjs 1129a22d66 Outer loop on GPU 2021-11-02 18:45:21 -07:00
blaz 269eb6b7d1 fix in the makefile configuration 2021-11-02 17:51:24 -07:00
Tom Stitt 2558593206 threads in z; seems like ~10% faster on v100... 2021-11-02 17:19:22 -07:00
camierjs f262bfe6dc Sync 2021-11-02 15:58:31 -07:00
Chris White 586659c973 guard add_test with MFEM_ENABLE_TESTING 2021-11-02 15:46:06 -07:00
camierjs f45f7348f0 Jacobians and local arrays 2021-11-02 14:30:38 -07:00
camierjs 87a2158bf2 Cleanup 2021-11-02 14:12:44 -07:00
Will Pazner 40f672c230 Add unary + SIMD specializations 2021-11-02 13:33:38 -07:00
Stowell, Mark L 678cceaf1e Merge remote-tracking branch 'origin/master' into pw-coefs-dev
# Conflicts:
#	fem/coefficient.cpp
2021-11-02 12:08:00 -07:00
termi-official e49a744288 Apply style... 2021-11-02 18:50:49 +01:00
termi-official 388350029b Propagate first_and_last option into nonlinear iterative solvers. 2021-11-02 18:48:43 +01:00
camierjs 08d5d8ef80 Add tests/benchmarks bench_lor_assembly 2021-11-02 10:47:53 -07:00
termi-official 3c3d220460 Last MINRES iteration was sometimes missing. 2021-11-02 18:37:22 +01:00
termi-official 0279dd9787 Fix FGMRES one-by-off. 2021-11-02 18:34:29 +01:00
termi-official 46d800d05e Report correct norm in BiCGStab. 2021-11-02 18:29:20 +01:00
termi-official 4e1420f1e2 Fix GMRES final iteration report. 2021-11-02 18:29:02 +01:00
termi-official a9e93adb3f Deduplicate MINRES output. 2021-11-02 17:48:18 +01:00
termi-official 3bd47c26fd Make FGMRES output more consistent. 2021-11-02 17:21:01 +01:00
termi-official 3348ba2dbd Make BiCGStab output more consistent. 2021-11-02 17:07:46 +01:00
camierjs cef5c6a795 Merge remote-tracking branch 'origin/lor-batched-pa' into lor-batched-gpu 2021-11-02 07:58:06 -07:00
Will Pazner c5a868208f Add MFEM_UNROLL definition for clang and gcc 2021-11-01 17:50:32 -07:00
Will Pazner 31e1efb076 Unroll loops with pragma
Big speedup, but can we do this in a portable way?
2021-11-01 17:32:50 -07:00
Will Pazner 3a1f878bc6 Store Q-data for stride-1 access 2021-11-01 17:32:27 -07:00
Will Pazner b6d314b6ba Minor optim 2021-11-01 17:17:53 -07:00
Will Pazner dfa1ee3711 Use precomputed sparsity 2021-11-01 17:06:50 -07:00
Will Pazner e47a3ccf77 Alg 4: sum factorization 2021-11-01 16:40:58 -07:00
Ketan Mittal d8df06ab70 minor - put back accidentally removed lines 2021-11-01 10:33:07 -07:00
Ketan Mittal 5dcd85c7c7 make style 2021-11-01 09:18:20 -07:00
Ketan Mittal 047ca50acb Merge branch 'master' of https://github.com/mfem/mfem into tmop-renameandrefactor 2021-11-01 09:17:34 -07:00
Tzanio Kolev 4d1a0ac51d Update CHANGELOG 2021-10-31 14:59:55 -07:00
Tzanio c887336fa4 Updated CHANGELOG 2021-10-31 14:59:06 -07:00
Tzanio Kolev cde981b141 Merge branch 'master' into bicgstab-print-lvl-fix 2021-10-31 14:50:34 -07:00
Tzanio b8b2d23087 Merge branch 'master' into ciurej/feature/conduit-data-collection-adjsets 2021-10-31 14:44:55 -07:00
Will Pazner 02828bbbff Compute geometric factors manually 2021-10-31 12:10:09 -07:00
Will Pazner 8732562d82 Alg 3 2021-10-31 10:07:26 -07:00
Will Pazner 7015973756 Alg 2 in 3D 2021-10-31 08:28:49 -07:00
camierjs d4440f8abe Merge master in linext 2021-10-30 10:48:46 -07:00
camierjs 35ebe4270b Merge master in amd 2021-10-30 10:41:04 -07:00
Will Pazner cd107e9c55 Minor 2021-10-29 19:16:22 -07:00
Will Pazner 8d1780147d Add 2D compile-time option to performance/ex1[p]
Adds sample runs testing the 2D templated code to avoid regressions
2021-10-29 17:40:27 -07:00
Will Pazner ea576f49df Prototype of batched LOR assembly
Diffusion kernel in 2D and 3D
2021-10-29 17:29:21 -07:00
Will Pazner d36baa4dbb [don't merge] Changes to templated code
Got rid of unary + in 2D kernel, changed to Gauss-Lobatto integration rule
2021-10-29 17:29:21 -07:00
Will Pazner cebde80304 First pass at batched LOR assembly (1D only) 2021-10-29 17:29:21 -07:00
Will Pazner ef02be8c82 Format Doxygen comment 2021-10-29 17:29:21 -07:00
Will Pazner f54136e6ea Use nullptr instead of NULL in LOR classes 2021-10-29 17:29:21 -07:00
Will Pazner 259c8b510d Clarify DOF and TDOF permutations for LOR 2021-10-29 17:29:21 -07:00
Will Pazner f452882d29 Add unary + operator to AutoSIMD 2021-10-29 16:22:13 -07:00
blaz a42ee48079 interface modifications and fixes 2021-10-29 12:13:33 -07:00
blaz bfafa6c97e fixed kapa -> kappa 2021-10-29 11:24:44 -07:00
blaz eeb0ede002 Merge branch 'master' into pr_autodiff 2021-10-29 11:21:47 -07:00
blaz ef5cc5aa5d Merge branch 'pr_autodiff' of https://github.com/mfem/mfem into pr_autodiff 2021-10-29 11:11:07 -07:00
Joseph Ciurej 8d76e7462a fixed the wording in a code comment 2021-10-27 13:40:09 -07:00
mdeuse 92710559c0 Merge branch 'master' of https://github.com/mfem/mfem into complex_fem-improvement 2021-10-27 22:28:49 +02:00
Joseph Ciurej cecda6b411 fixed a few bugs w/ neighbor/rank distinction between MFEM and Blueprint 2021-10-24 11:52:17 -07:00
Joseph Ciurej 8145b4c377 removed invalid boundary topology and added a note about its exclusion 2021-10-21 12:29:36 -07:00
Joseph Ciurej 2c1a39031e extend 'ConduitDataCollection' adjacency information to include shared boundaries 2021-10-21 12:29:36 -07:00
Joseph Ciurej ded707375a add basic support to 'ConduitDataCollection' for outputting adjacency information 2021-10-21 12:29:35 -07:00
Ketan Mittal 0d45eab46d initial commit with some refactoring and renaming 2021-10-20 10:38:36 -07:00
camierjs 67648edbd3 Merge master in linext 2021-10-17 09:28:08 -07:00
camierjs 48033a6248 Test size 2021-10-17 09:27:56 -07:00
camierjs 6cfda5768d Merge master in linext 2021-10-15 14:03:44 -07:00
camierjs 3195f8cb1a Almost equal, Grad D1D fix 2021-10-15 14:02:57 -07:00
camierjs a6d8b0dd3f Fix AppVeyor restrict errors - bis 2021-10-13 10:55:26 -07:00
Will Pazner 15fbf80e57 Remove unneeded comment 2021-10-12 21:27:21 -07:00
Will Pazner e3450da53e Minor changes to MINRESSolver print level 2021-10-12 20:49:35 -07:00
Will Pazner 1c4b657f63 Minor changes to SLISolver printing 2021-10-12 20:37:12 -07:00
Will Pazner a19e625fc9 Delete empty comments 2021-10-12 18:10:40 -07:00
Will Pazner 37bd0ec75d Edits to IterativeSolver Doxygen comments 2021-10-12 18:03:59 -07:00
Will Pazner 020d2173c3 Minor changes to "FirstAndLast" print options 2021-10-12 11:39:54 -07:00
camierjs f134a17870 Fix AppVeyor restrict errors 2021-10-11 10:23:27 -07:00
camierjs 442e172793 Add fem/bilininteg_mass_pa_fast_hip.cpp kernels 2021-10-11 09:57:33 -07:00
camierjs b5598d192f Merge master in amd 2021-10-11 08:39:32 -07:00
camierjs 64d4e31db1 Test & pass vector domain grad 2021-10-08 11:45:57 -07:00
camierjs 3c01497e5f Vdim fix for VectorDomainLF 2021-10-08 09:13:33 -07:00
Victor A. P. Magri 28369b9be2 Update BoomerAMGCoarseParms call 2021-10-07 13:54:25 -07:00
camierjs 36b9398432 Fix unused variable 2021-10-06 16:37:57 -07:00
camierjs e282332ec2 DomainLF, VectorDomainLF, DomainLFGrad & VectorDomainLFGrad, 2D & 3D testbench 2021-10-06 16:31:54 -07:00
Stowell, Mark L 594711d99f Fixing Doxygen comments 2021-10-05 18:55:25 -07:00
Stowell, Mark L c8cb364d86 Adding Piecewise coefficient classes 2021-10-05 18:45:00 -07:00
camierjs 4ecac81e45 First pass, but vdim VectorDomainLFGradIntegrator 2021-10-05 11:32:04 -07:00
camierjs 76f93e21f5 Update 2021-10-05 10:42:01 -07:00
camierjs eab24f0842 2D/3D domain & vector domain 2021-10-04 15:06:27 -07:00
camierjs 8986e54f20 vector domain 2021-10-04 12:34:08 -07:00
camierjs c80a5e681b Add scalar test with constant coeff 2021-10-04 09:38:31 -07:00
camierjs 04ab9f4699 Merge master in linext 2021-10-01 08:03:49 -07:00
termi-official b889952837 Fix new macros in MSVC. 2021-09-29 16:54:26 +02:00
termi-official 8d96e40489 Make style... 2021-09-29 01:40:03 +02:00
termi-official d493efa295 Tweak docs. 2021-09-29 01:32:34 +02:00
termi-official a43de945bd Forgot a file. 2021-09-29 01:16:36 +02:00
termi-official 32a7939e4e Incorporate Will's changes. 2021-09-29 01:15:02 +02:00
termi-official 1f17768e33 Print warnings to mfem::err 2021-09-29 00:44:45 +02:00
termi-official 91f59a269c Revamp 'first and last' print option from legacy print level 3. 2021-09-29 00:41:59 +02:00
termi-official f8d501562f Exchange PrintLevel enum with struct+builder pattern. 2021-09-29 00:16:25 +02:00
termi-official b6530be3f9 Make style... 2021-09-28 21:45:51 +02:00
termi-official 3cbfee625a Add portable way to skip warnings generated by internal usage of deprecated variables. 2021-09-28 21:42:18 +02:00
Dennis Ogiermann 0ec9789849 Merge pull request #2572 from mfem/deprecate-print-level
Fix deprecation warnings for IterativeSolver::print_level
2021-09-28 18:25:50 +02:00
camierjs 50332ea9cc Merge master in amd 2021-09-28 07:33:25 -07:00
camierjs 9ba51c724f Merge master in linext 2021-09-28 07:32:48 -07:00
Will Pazner 7a20d17f90 Add pragma to ignore deprecated warnings in IterativeSolver::IterativeSolver 2021-09-27 15:47:04 -07:00
Will Pazner 317032fdbd Add bitwise or overload for PrintLevel 2021-09-27 15:34:20 -07:00
Will Pazner d6a0a5a13d Fix deprecation warnings for IterativeSolver::print_level 2021-09-27 15:21:07 -07:00
termi-official c1c39a51b5 Make style... 2021-09-27 23:40:41 +02:00
termi-official c5a7b179d8 Refactor setter/getter logic for print levels. 2021-09-27 23:36:47 +02:00
termi-official e88b99c2e2 Incorporate Will's suggestion: struct PrintOptions -> enum PrintLevel + deprecate old mechanism 2021-09-27 23:24:39 +02:00
Tzanio 793222a7e1 Merge branch 'master' into bicgstab-print-lvl-fix
Conflicts:
	CHANGELOG
2021-09-27 09:13:41 -07:00
termi-official 05bf01378c Add to changelog. 2021-09-27 18:11:53 +02:00
termi-official 71b7497037 Fix math string. 2021-09-27 17:30:49 +02:00
termi-official 5279744c6e Fix out of sync with upstream. 2021-09-27 17:04:05 +02:00
termi-official 19fae213a5 Fix some doxygen issues where no doc has been generated. 2021-09-27 16:53:42 +02:00
Tzanio Kolev a303bcdf0a Merge branch 'master' into pr_autodiff 2021-09-26 17:28:25 -07:00
mdeuse e533a91560 Added AddDomainIntegrator with marker for (Par)ComplexLinearForm and (Par)SesquilinearForm 2021-09-26 22:14:01 +02:00
termi-official 0768f1940f Specify convergence docs. 2021-09-25 19:32:29 +02:00
termi-official 0c9296ab4b Propagate print_options through all solvers and unify output. 2021-09-25 19:13:40 +02:00
termi-official 7632309ed6 Fix hidden assumption taken when testing (all ranks print out if MPI is not properly initialized). 2021-09-25 17:27:54 +02:00
termi-official 439a3d773c Give recommendation and reasoning for new printing behavior. 2021-09-25 14:38:00 +02:00
termi-official ec2e958e04 Introduce PrintOptions as a new mechanism to set the reporting policy of iterative solvers + some Docs. 2021-09-25 14:28:25 +02:00
camierjs 1ba9cd28bc Initial linear form extension 2021-09-24 11:48:33 -07:00
camierjs 1ded8554ea Merge master in amd 2021-09-15 10:00:30 -07:00
camierjs 8224e0f25d Merge master in amd 2021-09-13 09:11:32 -07:00
termi-official 53eb418526 Merge branch 'master' into bicgstab-print-lvl-fix 2021-09-08 15:10:26 +02:00
termi-official eea189ba98 Change BICGStabSolver print level semantics. 2021-09-08 14:55:03 +02:00
camierjs 3eb542f60c Merge master in amd 2021-09-07 07:55:29 -07:00
blaz 7b9d5d0084 Merge branch 'master' into pr_autodiff 2021-09-02 12:40:08 -07:00
blaz d41b7f7e83 Documentation 2021-09-02 12:37:18 -07:00
camierjs 26eac83243 Merge master in amd 2021-09-02 08:57:05 -07:00
blaz 1c4602cf64 More documentation 2021-08-25 09:34:03 -07:00
camierjs 4e23f9d936 Merge master in amd 2021-08-25 09:05:42 -07:00
blaz 2fd06ce867 documentation 2021-08-24 23:48:26 -07:00
blaz 435d542208 All functors are created as private objects 2021-08-24 20:32:06 -07:00
blaz bd155a672e FDual documentation 2021-08-24 18:07:18 -07:00
blaz afacaa7cad Documentation 2021-08-24 17:36:17 -07:00
blaz f9811d774c FDual name changed for FDualNumber 2021-08-24 16:58:25 -07:00
blaz 3e0b76a048 Changed names for the vector and the matrix classes 2021-08-24 16:53:16 -07:00
camierjs 2965eda686 Merge master in amd 2021-08-20 14:21:47 -07:00
camierjs 8dc690f8f9 Add Z-batch to fast kernels 2021-08-20 11:55:59 -07:00
camierjs f4355af2fc Revert file fem/bilininteg_mass_pa_diag.cpp 2021-08-20 10:26:00 -07:00
camierjs a11e6a43bc Fix variable rename and extra file 2021-08-20 10:19:14 -07:00
camierjs dacb681df0 Meld toward master 2021-08-20 10:10:46 -07:00
camierjs d61ebf5ff5 Merge master in amd 2021-08-20 08:34:40 -07:00
blaz 59151dbe58 documentation and small changes 2021-08-13 20:13:40 -07:00
blaz 002514c2e0 Merge branch 'master' into pr_autodiff 2021-08-13 16:20:11 -07:00
camierjs bf40b4d55e Remove deprecated calls 2021-08-13 16:14:14 -07:00
camierjs 36fee9505d Fix unused variable 2021-08-13 16:10:33 -07:00
camierjs 3399eab433 Remove include debug header 2021-08-13 15:58:07 -07:00
camierjs 8adfdcd003 Propagate changes 2021-08-13 15:42:26 -07:00
camierjs 491d4427f5 Merge master in amd 2021-08-13 15:31:46 -07:00
camierjs 33aece48c2 Action type for mass kernels 2021-08-13 15:31:27 -07:00
camierjs e421e95c31 Add integrator KernelType logic to handle hybrid E2E (default) and L2L (non-deterministic) kernels 2021-08-12 11:24:17 -07:00
camierjs ca4b4c2e4d Split fem/bilininteg_mass_pa into fem/bilininteg_mass_pa_diag 2021-08-11 10:10:39 -07:00
camierjs d2834d37af Renamea 'ndk' to 'fast' and add AMD specific file with 'fast3' shortcut 2021-08-11 10:02:01 -07:00
camierjs ae9e67e8c2 3 fast kernels 2021-08-10 14:43:33 -07:00
blaz 23cd7f75bb changed back miniapp CMakefile 2021-08-06 11:12:32 -07:00
blaz 09b67ab18d Merge branch 'master' into pr_autodiff 2021-08-06 11:01:22 -07:00
blaz 6327127cdc cosmetics 2021-08-06 10:56:23 -07:00
camierjs baff2dc287 Fix variable name 2021-08-05 10:00:27 -07:00
camierjs 958dfc066e Add fast kernel version number 2021-08-05 09:52:11 -07:00
camierjs a9fa288c20 Merge master in amd 2021-08-04 18:35:35 -07:00
camierjs dd70a615e3 Rename to NDK (Non Deterministic Kernels)
Add 'Regs' kernels which use less shared memory
2021-08-04 18:33:56 -07:00
camierjs 4b79037a7d Merge master in amd 2021-07-26 10:41:54 -07:00
camierjs 3572db4761 Rename AMD => NonDeterministicKernels 2021-07-26 10:41:34 -07:00
camierjs 0f0d7eba52 Laghos kernels 2021-07-16 11:10:14 -07:00
camierjs 5ecd76cd26 Laghos addon 2021-07-16 10:44:40 -07:00
camierjs d10e5c5bc8 Merge master in amd 2021-07-15 14:20:47 -07:00
camierjs c2bd05b8f3 Change AMD_PAMassApply forward declaration for AppVeyor 2021-07-14 15:40:54 -07:00
camierjs c00e8a33c7 Remove restrict for AppVeyor 2021-07-14 15:01:51 -07:00
camierjs 9f13c8d574 Update fem/CMakeLists.txt 2021-07-14 14:35:50 -07:00
camierjs 0f8f3d714e Initial ex1/mass setup through AMD environment variable 2021-07-14 14:19:13 -07:00
blaz 86a297b34f Merge branch 'pr_autodiff' of https://github.com/mfem/mfem into pr_autodiff 2021-07-14 12:02:07 -07:00
blaz a9d6514fb6 cleaned version 2021-07-14 11:59:52 -07:00
blaz 7fcd181280 modified INSTALL 2021-07-03 23:47:06 -07:00
blaz d7ae085678 license check 2021-07-02 16:10:14 -07:00
blaz e967c8a7ef copyright check 2021-07-02 15:52:26 -07:00
blaz 1a6c24c5f2 bug in makefile 2021-07-02 15:42:31 -07:00
blaz 340e3ed188 autodiff makefile 2021-07-02 15:30:46 -07:00
blaz 1382ed617a Merge remote-tracking branch 'origin/master' into pr_autodiff 2021-07-02 15:08:41 -07:00
blaz 4d834ca852 cleaned code 2021-07-02 15:05:28 -07:00
blaz c8a8562ea4 modification and examples 2021-07-02 11:21:48 -07:00
Yohann Dudouit 3ac9eff225 Improve documentation. 2021-06-28 17:06:42 -07:00
Yohann Dudouit 3d399d8eb3 Remove unnecessary Reset. 2021-06-25 11:16:09 -07:00
Yohann Dudouit 216e0dfe08 Use Reset() in default constructor. 2021-06-24 19:08:38 -07:00
blaz a32ca0cb89 Another Lambda example 2021-05-26 15:53:39 -07:00
blaz 2e92b44070 Lambda function differentiation 2021-05-26 15:11:05 -07:00
blaz 2aa374efe8 Example of auto diff 2021-05-25 21:00:57 -07:00
blaz 476e642935 added cmake and make files for Eigen and CoDiPack 2021-05-25 17:53:33 -07:00
blaz 0da14179f7 initial copy frm fadg branch 2021-05-25 16:38:32 -07:00
252 changed files with 21079 additions and 2506 deletions
+2 -2
View File
@@ -82,9 +82,9 @@ jobs:
uses: mfem/github-actions/build-mfem@v2.0
with:
os: ${{ runner.os }}
target: optim
target: opt
codecov: NO
mpi: parallel
mpi: par
build-system: make
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
+24
View File
@@ -15,6 +15,19 @@
CMakeCache.txt
CMakeFiles/
# NSYS files
*.nsys-rep
# Benchmark files
*.tex
*.org
*.aux
*.log
*.gnuplot
*.table
*.pdf
*.png
# Backup files
*~
@@ -225,6 +238,14 @@ miniapps/mtop/ParHeat*
miniapps/mtop/seqheat
miniapps/mtop/SeqHeat*
miniapps/autodiff/paradiff
miniapps/autodiff/seqadiff
miniapps/autodiff/seqtest
miniapps/autodiff/par_example
miniapps/autodiff/seq_example
miniapps/autodiff/seq_test
miniapps/autodiff/Exampl*
miniapps/navier/navier_mms
miniapps/navier/navier_kovasznay
miniapps/navier/navier_kovasznay_vs
@@ -308,6 +329,9 @@ tests/unit/debug_device_tests
# Benchmark binaries
tests/benchmarks/bench_ceed
tests/benchmarks/bench_solvers
tests/benchmarks/bench_linext
tests/benchmarks/bench_lor_assembly
tests/benchmarks/bench_tmop
tests/benchmarks/bench_vector
tests/benchmarks/bench_virtuals
+36 -4
View File
@@ -29,12 +29,34 @@ stages:
variables:
CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
# MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
# used in '.gitlab/configs/<machine>-config.yml':
MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
# Defines the default choice for updating the saved baseline results. By default
# the baseline can only be updated from the master branch. This variable offers
# the option to manually ask for rebaselining from another branch if necessary.
REBASELINE: "NO"
AUTOTEST: "NO"
# AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
# * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
# files to the MFEM/autotest repo.
# * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
# files to the MFEM/autotest repo. Instead they will just show the contents
# of the report files and remove them.
AUTOTEST_COMMIT: "YES"
# Trigger subpipelines:
quartz-build-and-test:
stage: sub-pipelines
variables:
_AUTOTEST: $AUTOTEST
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/quartz-build-and-test.yml
strategy: depend
@@ -42,7 +64,11 @@ quartz-build-and-test:
quartz-baseline:
stage: sub-pipelines
variables:
_AUTOTEST: $AUTOTEST
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
REBASELINE: "${REBASELINE}"
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/quartz-baseline.yml
strategy: depend
@@ -50,7 +76,10 @@ quartz-baseline:
lassen-build-and-test:
stage: sub-pipelines
variables:
_AUTOTEST: $AUTOTEST
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/lassen-build-and-test.yml
strategy: depend
@@ -58,7 +87,10 @@ lassen-build-and-test:
corona-build-and-test:
stage: sub-pipelines
variables:
_AUTOTEST: $AUTOTEST
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/corona-build-and-test.yml
strategy: depend
+1 -9
View File
@@ -18,19 +18,13 @@ variables:
# the pipeline, preventing any form of concurrency with other pipelines. This
# also means that the BUILD_ROOT directory will never be cleaned.
# TODO: add a clean-up mechanism
BUILD_ROOT: ${CI_BUILDS_DIR}/MFEM_${MACHINE_NAME}/${CI_PROJECT_NAME}_${CI_COMMIT_REF_SLUG}_${CI_PIPELINE_ID}
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
# On LLNL's quartz, there is only one allocation shared among jobs in order to
# save time and resource. This allocation has to be uniquely named so that we
# are sure to retrieve it.
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
# Defines the default choice for updating the saved baseline results. By default
# the baseline can only be updated from the master branch. This variable offers
# the option to manually ask for rebaselining from another branch if necessary.
_REBASELINE: "NO"
_AUTOTEST: "NO"
# Git repositories used in the pipeline
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
@@ -40,5 +34,3 @@ variables:
# Directory used to place artifacts.
ARTIFACTS_DIR: artifacts
SLURM_OVERLAP: 1
+10 -5
View File
@@ -26,17 +26,20 @@ variables:
- if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
when: never
# Dont run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $_AUTOTEST != "YES"'
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /report_job_success/ && $_AUTOTEST == "YES"'
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $_AUTOTEST == "YES"'
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always release resource
- if: '$CI_JOB_NAME =~ /release_resource/'
when: always
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
# Default is to run if previous stage succeeded
- when: on_success
@@ -46,9 +49,11 @@ variables:
extends: [.on_corona]
stage: build_and_test
script:
# THREADS is used by 'tests/gitlab/build_and_test', run below
- export THREADS=12
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --build-root "${BUILD_ROOT}" --data
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+10 -4
View File
@@ -21,14 +21,17 @@ variables:
- if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $_AUTOTEST != "YES"'
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /report_job_success/ && $_AUTOTEST == "YES"'
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $_AUTOTEST == "YES"'
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
- when: on_success
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
@@ -39,5 +42,8 @@ variables:
extends: [.on_lassen]
stage: build_and_test
script:
- lalloc 1 -W 30 -q pdebug tests/gitlab/build_and_test --spec "${SPEC}" --build-root "${BUILD_ROOT}" --data
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
- lalloc 1 -W 30 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
needs: [setup]
+10 -5
View File
@@ -22,17 +22,20 @@ variables:
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"'
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $_AUTOTEST != "YES"'
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /report_job_success/ && $_AUTOTEST == "YES"'
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $_AUTOTEST == "YES"'
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always release resource
- if: '$CI_JOB_NAME =~ /release_resource/'
when: always
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
# Default is to run if previous stage succeeded
- when: on_success
@@ -42,9 +45,11 @@ variables:
extends: [.on_quartz]
stage: build_and_test
script:
# THREADS is used by 'tests/gitlab/build_and_test', run below
- export THREADS=12
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 30 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --build-root "${BUILD_ROOT}" --data
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 30 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+81
View File
@@ -0,0 +1,81 @@
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Jobs report
.report_job_success:
script:
- echo ${MACHINE_NAME}
- echo ${AUTOTEST}
- echo ${AUTOTEST_COMMIT}
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- cd ${AUTOTEST_ROOT}
- |
(
date
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -w 5 9; do
true
done
echo "Aquired lock on '$PWD/autotest.lock'"
date
# Report SUCCESS while holding the file lock on 'autotest.lock'.
# The next script uses the following environment variables:
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
err=$?
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
.report_job_failure:
script:
- echo ${MACHINE_NAME}
- echo ${AUTOTEST}
- echo ${AUTOTEST_COMMIT}
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- cd ${AUTOTEST_ROOT}
- |
(
date
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -w 5 9; do
true
done
echo "Aquired lock on '$PWD/autotest.lock'"
date
# Report FAILURE while holding the file lock on 'autotest.lock'.
# The next script uses the following environment variables:
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
err=$?
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
+39 -9
View File
@@ -9,13 +9,6 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
# when call the runtest script in MFEM test repo.
# Note: the value must be consistent with what setup_baseline does.
variables:
TPLS_DIR: ${BUILD_ROOT}/tpls
AUTOTEST_ROOT: ${CI_BUILDS_DIR}/MFEM_${MACHINE_NAME}_baseline
# The setup_baseline job doesn't rely on MFEM git repo. It prepares a
# pipeline-wide working directory downloading/updating external repos.
# TODO:
@@ -30,13 +23,50 @@ setup_baseline:
variables:
GIT_STRATEGY: none
script:
#
# Setup ${BUILD_ROOT}/tpls and ${BUILD_ROOT}/tests:
#
- echo "MACHINE_NAME = ${MACHINE_NAME}"
- echo "REBASELINE = ${REBASELINE}"
- echo "AUTOTEST = ${AUTOTEST}"
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
- echo "BUILD_ROOT ${BUILD_ROOT}"
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
- if [ ! -d "tpls" ]; then git clone ${TPLS_REPO}; fi
- if [ ! -d "tests" ]; then git clone ${TESTS_REPO}; fi
- cd tpls && git pull && cd ..
- cd tests && git pull origin && cd ..
#
# Setup ${AUTOTEST_ROOT}/autotest:
#
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
- if [ ! -d "autotest" ]; then git clone ${AUTOTEST_REPO}; fi
- cd autotest && git pull && cd ..
- command -v flock || echo "Required command 'flock' not found"
- |
(
date
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -w 5 9; do
true
done
echo "Aquired lock on '$PWD/autotest.lock'"
date
# clone/update the autotest repo while holding the file lock on
# 'autotest.lock'
err=0
if [[ ! -d "autotest" ]]; then
git clone ${AUTOTEST_REPO}
else
cd autotest && git pull && cd ..
fi || err=1
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
+73 -13
View File
@@ -9,13 +9,10 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
variables:
AUTOTEST_ROOT: ${CI_BUILDS_DIR}/MFEM_${MACHINE_NAME}_build_and_test
# setup clones the mfem/data repo in ${BUILD_ROOT}. The build_and_test script
# then symlinks the repo to the parent directory of the MFEM source directory.
# Unit tests that depend on the mfem/data repo will then detect that this
# directory is present and be enabled.
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
# script then symlinks the repo to the parent directory of the MFEM source
# directory. Unit tests that depend on the mfem/data repo will then detect that
# this directory is present and be enabled.
setup:
tags:
- shell
@@ -24,11 +21,74 @@ setup:
variables:
GIT_STRATEGY: none
script:
- echo "BUILD_ROOT ${BUILD_ROOT}"
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
- if [ ! -d data ]; then git clone ${MFEM_DATA_REPO}; fi
#
# Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
# and '.gitlab/configs/<machine>-config.yml'
#
- echo "MACHINE_NAME = ${MACHINE_NAME}"
- echo "AUTOTEST = ${AUTOTEST}"
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
- echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
- mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
- command -v flock || echo "Required command 'flock' not found"
- |
(
date
echo "Waiting to aquire lock on '$PWD/mfem-data.lock' ..."
# try to get an excusive lock on fd 9 (mfem-data.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -w 5 9; do
true
done
echo "Aquired lock on '$PWD/mfem-data.lock'"
date
# clone/update the mfem/data repo while holding the file lock on
# 'mfem-data.lock'
err=0
if [[ ! -d "mfem-data" ]]; then
git clone ${MFEM_DATA_REPO} "mfem-data"
else
cd "mfem-data" && git pull && cd ..
fi || err=1
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> mfem-data.lock
#
# Setup ${AUTOTEST_ROOT}/autotest:
#
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
- if [ ! -d "autotest" ]; then git clone ${AUTOTEST_REPO}; fi
- cd autotest && git pull && cd ..
- |
(
date
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -w 5 9; do
true
done
echo "Aquired lock on '$PWD/autotest.lock'"
date
# clone/update the autotest repo while holding the file lock on
# 'autotest.lock'
err=0
if [[ ! -d "autotest" ]]; then
git clone ${AUTOTEST_REPO}
else
cd autotest && git pull && cd ..
fi || err=1
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
+10 -6
View File
@@ -22,6 +22,7 @@ allocate_resource:
extends: .on_corona
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=mi60 --time=30 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
needs: [setup]
@@ -40,24 +41,27 @@ release_resource:
extends: .on_corona
stage: release_resource_and_report
script:
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
needs: [rocm_gcc_8.3.1]
# Jobs report
report_job_success:
extends: .on_corona
stage: release_resource_and_report
script:
- .gitlab/scripts/report_build_and_test_success
extends:
- .on_corona
- .report_job_success
report_job_failure:
extends: .on_corona
stage: release_resource_and_report
script:
- .gitlab/scripts/report_build_and_test_failure
extends:
- .on_corona
- .report_job_failure
include:
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/corona-config.yml
- local: .gitlab/configs/setup-build-and-test.yml
- local: .gitlab/configs/report-build-and-test.yml
+7 -6
View File
@@ -21,18 +21,19 @@ opt_mpi_cuda_xl_16_1_1_8:
# Jobs report
report_job_success:
extends: .on_lassen
stage: report
script:
- .gitlab/scripts/report_build_and_test_success
extends:
- .on_lassen
- .report_job_success
report_job_failure:
extends: .on_lassen
stage: report
script:
- .gitlab/scripts/report_build_and_test_failure
extends:
- .on_lassen
- .report_job_failure
include:
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/lassen-config.yml
- local: .gitlab/configs/setup-build-and-test.yml
- local: .gitlab/configs/report-build-and-test.yml
+84 -15
View File
@@ -16,12 +16,26 @@ stages:
- setup
- baseline_check
- baseline_report
- cleanup
- baseline_publish
baselinecheck_mfem_intel_quartz:
extends: [.on_quartz]
stage: baseline_check
variables:
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
# when call the runtest script in MFEM test repo.
# Note: the value must be consistent with the setup performed in
# .gitlab/configs/setup-baseline.yml.
TPLS_DIR: ${BUILD_ROOT}/tpls
script:
- echo ${BUILD_ROOT}
- echo ${TPLS_DIR}
# Used by the tests in MFEM/tests:
- export MFEM_TEST_NP=32
# The next script uses the following environment variables:
# * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
# * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
- .gitlab/scripts/baseline
artifacts:
when: always
@@ -29,33 +43,88 @@ baselinecheck_mfem_intel_quartz:
- ${ARTIFACTS_DIR}
allow_failure: true
cleanup:
extends: .on_quartz
stage: cleanup
variables:
GIT_STRATEGY: none
script:
- echo "BUILD_ROOT=${BUILD_ROOT}"
- rm -rf "${BUILD_ROOT}" || true
report_baseline:
extends: [.on_quartz]
stage: baseline_report
script:
- cd ${AUTOTEST_ROOT}/autotest && git pull
- mkdir -p ${MACHINE_NAME}
- rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
- rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
- cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
- echo ${MACHINE_NAME}
- echo ${AUTOTEST}
- echo ${AUTOTEST_COMMIT}
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- cd ${AUTOTEST_ROOT}
- |
if [[ -f ${rundir}/*.err ]]
then
echo "See the pipeline here -> $CI_PIPELINE_URL" >> ${rundir}/*.err
cp ${rundir}/*.err ${rundir}/autotest-email.html
fi
- git add ${rundir}
- git commit -am "GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} with intel ($(date +%Y-%m-%d))"
- git push origin master
(
date
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -w 5 9; do
true
done
echo "Aquired lock on '$PWD/autotest.lock'"
date
# ----------------------
cd ${AUTOTEST_ROOT}/autotest || \
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
fi
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
>> ${rundir}/pipeline.txt
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
echo "Content of '$file'"
echo "******************************"
cat $file
echo "******************************"
done
rm -rf ${rundir} || true
fi
err=$?
# ----------------------
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
baselinepublish_mfem_quartz:
extends: [.on_quartz]
stage: baseline_publish
rules:
- if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
- if: '$REBASELINE == "YES"'
when: manual
script:
- echo ${BUILD_ROOT}
- echo ${PWD}
- echo ${ARTIFACTS_DIR}
- ls -lA ${ARTIFACTS_DIR}
- .gitlab/scripts/rebaseline
include:
+10 -6
View File
@@ -22,6 +22,7 @@ allocate_resource:
extends: .on_quartz
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=pdebug --time=30 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
@@ -73,23 +74,26 @@ release_resource:
extends: .on_quartz
stage: release_resource_and_report
script:
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
# Jobs report
report_job_success:
extends: .on_quartz
stage: release_resource_and_report
script:
- .gitlab/scripts/report_build_and_test_success
extends:
- .on_quartz
- .report_job_success
report_job_failure:
extends: .on_quartz
stage: release_resource_and_report
script:
- .gitlab/scripts/report_build_and_test_failure
extends:
- .on_quartz
- .report_job_failure
include:
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/quartz-config.yml
- local: .gitlab/configs/setup-build-and-test.yml
- local: .gitlab/configs/report-build-and-test.yml
+9 -1
View File
@@ -20,7 +20,8 @@ base_out=${base}.out
artifacts_path=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}
# prepare
cd ${BUILD_ROOT}
cd ${BUILD_ROOT} || \
{ echo "Invalid BUILD_ROOT=$BUILD_ROOT"; exit 1; }
ln -snf ${CI_PROJECT_DIR} mfem
cd tests
[[ -d _${BASELINE_TEST} ]] && rm -rf _${BASELINE_TEST}
@@ -33,6 +34,9 @@ elif [[ ${MACHINE_NAME} == "corona" ]]; then
srun --nodes=1 -t 60 -p mi60 ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
else
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
exit 1
fi
# post
@@ -60,6 +64,10 @@ then
cp ${base_out} ${artifacts_path}/${base_out}
fi
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
# base_diff won't even exist if there is no difference.
if [[ -f ${base_diff} ]]
then
+20 -7
View File
@@ -13,20 +13,33 @@
echo "Runs if there was at least one failure on ${MACHINE_NAME}"
cd ${AUTOTEST_ROOT}/autotest && git pull
cd ${AUTOTEST_ROOT}/autotest || \
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
echo "There was an error while running CI on ${MACHINE_NAME}" > ${rundir}/gitlab.err
echo "See the pipeline here -> $CI_PIPELINE_URL" >> ${rundir}/gitlab.err
printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
# Create 'autotest-email.html' to indicate failure:
cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
git pull
git add ${rundir}
git commit -am "${msg}"
git push origin master
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
echo "Content of '$file'"
echo "******************************"
cat $file
echo "******************************"
done
rm -rf ${rundir} || true
fi
+19 -7
View File
@@ -13,18 +13,30 @@
echo "Can only run if all the ${MACHINE_NAME} jobs passed"
cd ${AUTOTEST_ROOT}/autotest && git pull
cd ${AUTOTEST_ROOT}/autotest || \
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
echo "The ${MACHINE_NAME} jobs were successful" > ${rundir}/gitlab.out
echo "See the pipeline here -> $CI_PIPELINE_URL" >> ${rundir}/gitlab.err
printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
git pull
git add ${rundir}
git commit -am "${msg}"
git push origin master
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
echo "Content of '$file'"
echo "******************************"
cat $file
echo "******************************"
done
rm -rf ${rundir} || true
fi
+27
View File
@@ -10,6 +10,17 @@
Version 4.3.1 (development)
===========================
- More explicit and consistent formating of the output of iterative solvers
with the new IterativeSolver::PrintLevel options. See linalg/solvers.hpp.
- Added support for automatic differentiation. Users can select between native
implementation and external library implementation during configuration. One
parallel and two serial examples are implemented in the miniapps/autodiff/
directory.
- GridFunctionCoefficient (and the related vector, gradient, divergence, and
curl classes) now work properly with LORDiscretization and LORSolver.
- Added support for mesh preprocessing to resolve fine scale problem data
before simulation. This feature uses adaptive mesh refinement to control the
associated data oscillation error. See the new Example 30/30p.
@@ -67,6 +78,22 @@ Version 4.3.1 (development)
- Added initial TMOP-based capabilities for surface fitting and tangential
relaxation in the mesh-optimizer and pmesh-optimizer miniapps.
- Added ParMesh Adjaceny Set (adjset) creation support to the Conduit Mesh
Blueprint MFEM wrapper functions in ConduitDataCollection.
- Added full assembly / device support for the LinearForm integrators:
* DomainLF: L(v) := (f, v)
* VectorDomainLF: L(v) := ((f1,...,fn), (v1,...,vn))
* DomainLFGrad: L(v) := (f,grad v)
* VectorDomainLFGrad: L(v) := ((f1x,f1y,f1z,...,fnx,fny,fnz),grad(v1,...,vn))
It can be enabled by setting the linear assembly level to
'LinearAssemblyLevel::FULL' with the 'LinearForm::SetAssemblyLevel' method.
- `HypreParVector` and `Vector` now support move semantics, and the copy
constructor for `HypreParVector` now copies the local vector data.
- The HPC versions of ex1 and ex1p (in miniapps/performance) now support
runtime selection of either 2D or 3D meshes.
Version 4.3, released on July 29, 2021
======================================
+12 -1
View File
@@ -252,6 +252,11 @@ if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
endif()
find_package(OpenMP REQUIRED)
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
if(APPLE)
# On macOS, the compiler needs additional help to find the <omp.h> header.
# See issue #2642 for more information.
include_directories(${OpenMP_CXX_INCLUDE_DIRS})
endif(APPLE)
endif()
# SuiteSparse (before SUNDIALS which may depend on KLU)
@@ -367,6 +372,12 @@ if (MFEM_USE_HIOP)
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
endif()
# CoDiPack package
if (MFEM_USE_CODIPACK)
find_package(CODIPACK REQUIRED)
# find_package updates CODIPACK_FOUND, CODIPACK_INCLUDE_DIRS, CODIPACK_LIBRARIES
endif()
# OCCA
if (MFEM_USE_OCCA)
find_package(OCCA REQUIRED)
@@ -446,7 +457,7 @@ endif()
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS PETSC
SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB NETCDF
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
CUSPARSE MKL_CPARDISO AMGX CALIPER BENCHMARK PARELAG MPI_CXX)
CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG MPI_CXX)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
+133
View File
@@ -0,0 +1,133 @@
# MFEM Code of Conduct
## Our Pledge
We as members, contributors, and leaders pledge to make participation in our
community a harassment-free experience for everyone, regardless of age, body
size, visible or invisible disability, ethnicity, sex characteristics, gender
identity and expression, level of experience, education, socio-economic status,
nationality, personal appearance, race, caste, color, religion, or sexual
identity and orientation.
We pledge to act and interact in ways that contribute to an open, welcoming,
diverse, inclusive, and healthy community.
## Our Standards
Examples of behavior that contributes to a positive environment for our
community include:
* Demonstrating empathy and kindness toward other people
* Being respectful of differing opinions, viewpoints, and experiences
* Giving and gracefully accepting constructive feedback
* Accepting responsibility and apologizing to those affected by our mistakes,
and learning from the experience
* Focusing on what is best not just for us as individuals, but for the overall
community
Examples of unacceptable behavior include:
* The use of sexualized language or imagery, and sexual attention or advances of
any kind
* Trolling, insulting or derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others' private information, such as a physical or email address,
without their explicit permission
* Other conduct which could reasonably be considered inappropriate in a
professional setting
## Enforcement Responsibilities
Community leaders are responsible for clarifying and enforcing our standards of
acceptable behavior and will take appropriate and fair corrective action in
response to any behavior that they deem inappropriate, threatening, offensive,
or harmful.
Community leaders have the right and responsibility to remove, edit, or reject
comments, commits, code, wiki edits, issues, and other contributions that are
not aligned to this Code of Conduct, and will communicate reasons for moderation
decisions when appropriate.
## Scope
This Code of Conduct applies within all community spaces, and also applies when
an individual is officially representing the community in public spaces.
Examples of representing our community include using an official e-mail address,
posting via an official social media account, or acting as an appointed
representative at an online or offline event.
## Enforcement
Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported to the community leaders responsible for enforcement at mfem@llnl.gov.
All complaints will be reviewed and investigated promptly and fairly.
All community leaders are obligated to respect the privacy and security of the
reporter of any incident. Anyone involved in the reported behavior will recuse
themselves from the investigation and decision making about the resolution of
the complaint.
## Enforcement Guidelines
Community leaders will follow these Community Impact Guidelines in determining
the consequences for any action they deem in violation of this Code of Conduct:
### 1. Correction
**Community Impact**: Use of inappropriate language or other behavior deemed
unprofessional or unwelcome in the community.
**Consequence**: A private, written warning from community leaders, providing
clarity around the nature of the violation and an explanation of why the
behavior was inappropriate. A public apology may be requested.
### 2. Warning
**Community Impact**: A violation through a single incident or series of
actions.
**Consequence**: A warning with consequences for continued behavior. No
interaction with the people involved, including unsolicited interaction with
those enforcing the Code of Conduct, for a specified period of time. This
includes avoiding interactions in community spaces as well as external channels
like social media. Violating these terms may lead to a temporary or permanent
ban.
### 3. Temporary Ban
**Community Impact**: A serious violation of community standards, including
sustained inappropriate behavior.
**Consequence**: A temporary ban from any sort of interaction or public
communication with the community for a specified period of time. No public or
private interaction with the people involved, including unsolicited interaction
with those enforcing the Code of Conduct, is allowed during this period.
Violating these terms may lead to a permanent ban.
### 4. Permanent Ban
**Community Impact**: Demonstrating a pattern of violation of community
standards, including sustained inappropriate behavior, harassment of an
individual, or aggression toward or disparagement of classes of individuals.
**Consequence**: A permanent ban from any sort of public interaction within the
community.
## Attribution
This Code of Conduct is adapted from the [Contributor Covenant][homepage],
version 2.1, available at
[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
Community Impact Guidelines were inspired by
[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
For answers to common questions about this code of conduct, see the FAQ at
[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
[https://www.contributor-covenant.org/translations][translations].
[homepage]: https://www.contributor-covenant.org
[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
[Mozilla CoC]: https://github.com/mozilla/diversity
[FAQ]: https://www.contributor-covenant.org/faq
[translations]: https://www.contributor-covenant.org/translations
+5
View File
@@ -21,6 +21,9 @@ documentation; new examples and miniapps; HPC performance improvements; etc.
MFEM is distributed under the terms of the BSD-3 license. All new contributions
must be made under this license.
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
in the MFEM community, you agree to abide by its rules.
If you plan on contributing to MFEM, consider reviewing the
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
already exists for your desired feature or the bug you ran into. Use a pull
@@ -123,6 +126,7 @@ The MFEM source code has the following structure:
├── mesh
├── miniapps
│ ├── adjoint
│ ├── autodiff
│ ├── common
│ ├── electromagnetics
│ ├── gslib
@@ -137,6 +141,7 @@ The MFEM source code has the following structure:
│ ├── tools
│ └── toys
└── tests
├── benchmarks
├── convergence
├── gitlab
├── mem_manager
+16
View File
@@ -467,6 +467,14 @@ MFEM_USE_HIOP = YES/NO
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
HPC solver for nonlinear optimization problems.
MFEM_USE_CODIPACK = YES/NO
Enable automatic differentiation using the CoDiPack library.
www.scicomp.uni-kl.de/codi/
MFEM_USE_ADFORWARD = YES/NO
Enable forward mode for AD packages. This option is valid
only if the AD package supports two modes (backward/forward).
MFEM_USE_CUDA = YES/NO
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
platform and programming model for general computing on graphical processing
@@ -703,6 +711,11 @@ The specific libraries and their options are:
Options: HIOP_OPT, HIOP_LIB.
Versions: HIOP >= 0.4.6.
- CoDiPack (optiobal), used with MFEM_USE_CODIPACK = YES
URL: https://www.scicomp.uni-kl.de/codi/
Options: CODIPACK_OPT
Versions: 1.9.3
- GSLIB (optional), used when MFEM_USE_GSLIB = YES. The gslib library must be
built prior to the MFEM build, as follows: download gslib-1.0.7, untar it at
the same level as MFEM and create a symbolic link: "ln -s gslib-1.0.7 gslib".
@@ -908,6 +921,8 @@ MFEM_USE_MPFR
MFEM_USE_ZLIB
MFEM_USE_PUMI
MFEM_USE_HIOP
MFEM_USE_CODIPACK
MFEM_USE_ADFORWARD
MFEM_USE_CUDA
MFEM_USE_OCCA
MFEM_USE_CEED
@@ -967,6 +982,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
- POSIXCLOCKS
- PUMI
- HIOP
- CoDiPack
- OCCA
- RAJA
- UMPIRE
+3 -3
View File
@@ -12,6 +12,9 @@ to enable high-performance scalable finite element discretization research and
application development on a wide variety of platforms, ranging from laptops to
supercomputers.
We welcome contributions and feedback from the community. Please see the file
CONTRIBUTING.md for additional details about our development process.
* For building instructions, see the file INSTALL, or type "make help".
* Copyright and licensing information can be found in files LICENSE and NOTICE.
@@ -19,9 +22,6 @@ supercomputers.
* The best starting point for new users interested in MFEM's features is to
review the examples and miniapps at https://mfem.org/examples.
* Developers interested in contributing to the library, should read the
instructions and documentation in the CONTRIBUTING.md file.
Conceptually, MFEM can be viewed as a finite element toolbox that provides the
building blocks for developing finite element algorithms in a manner similar to
that of MATLAB for linear algebra methods. In particular, MFEM provides support
+2
View File
@@ -54,6 +54,8 @@ set(MFEM_USE_CEED @MFEM_USE_CEED@)
set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
+6
View File
@@ -175,6 +175,12 @@
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
// Use forward mode for automatic differentiation
#cmakedefine MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD
#cmakedefine MFEM_USE_CODIPACK
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
+24
View File
@@ -0,0 +1,24 @@
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Automatic differentiation using the CoDiPack library.
# www.scicomp.uni-kl.de/codi/
# Sets the following variables:
# - CODIPACK_FOUND
# - CODIPACK_INCLUDE_DIRS
# - CODIPACK_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(CODIPACK CODIPACK CODIPACK_DIR
"include" "codi.h"
"lib" ""
"Paths to headers required by CODIPACK."
"Libraries required by CODIPACK.")
+6
View File
@@ -180,6 +180,12 @@
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
// Use forward mode for automatic differentiation
// #define MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD
// #define MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
// #define MFEM_USE_BENCHMARK
+2
View File
@@ -58,6 +58,8 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
+5
View File
@@ -58,6 +58,8 @@ option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
@@ -243,6 +245,9 @@ set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
set(LAPACK_LIBRARIES "" CACHE STRING "The LAPACK library.")
set(CODIPACK_INCLUDE_DIRS "${MFEM_DIR}/../CoDiPack/inlude" CACHE STRING "Path to CoDiPack headers.")
set(CODIPACK_LIBRARIES "")
# Some useful variables:
set(CMAKE_SKIP_PREPROCESSED_SOURCE_RULES ON) # Skip *.i rules
set(CMAKE_SKIP_ASSEMBLY_SOURCE_RULES ON) # Skip *.s rules
+14 -1
View File
@@ -59,6 +59,9 @@ HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
HIP_XCOMPILER =
HIP_XLINKER = -Wl,
# Flags for generating dependencies.
DEP_FLAGS = -MM -MT
ifneq ($(NOTMAC),)
AR = ar
ARFLAGS = crv
@@ -86,6 +89,9 @@ else
BUILD_RPATH = $(XLINKER)-undefined,dynamic_lookup
INSTALL_SOFLAGS = $(subst $1 ,,$(call MAKE_SOFLAGS,$(MFEM_LIB_DIR)))
INSTALL_RPATH = $(XLINKER)-undefined,dynamic_lookup
# Silence unused command line argument warnings when generating dependencies
# with mpicxx and clang
DEP_FLAGS := -Wno-unused-command-line-argument $(DEP_FLAGS)
endif
# Set CXXFLAGS to overwrite the default selection of DEBUG_FLAGS/OPTIM_FLAGS
@@ -151,6 +157,8 @@ MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
MFEM_USE_BENCHMARK = NO
MFEM_USE_PARELAG = NO
@@ -408,6 +416,11 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
HIOP_OPT = -I$(HIOP_DIR)/include
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
# CoDiPack
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
CODIPACK_OPT = -I$(CODIPACK_DIR)
CODIPACK_LIB =
# GSLIB library
GSLIB_DIR = @MFEM_DIR@/../gslib/build
GSLIB_OPT = -I$(GSLIB_DIR)/include
@@ -415,7 +428,7 @@ GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
# CUDA library configuration
CUDA_OPT =
CUDA_LIB = -lcusparse
CUDA_LIB = -lcusparse -lnvToolsExt
# HIP library configuration (currently not needed)
HIP_OPT =
+1
View File
@@ -781,6 +781,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/gslib \
@MFEM_SOURCE_DIR@/miniapps/meshing \
@MFEM_SOURCE_DIR@/miniapps/mtop \
@MFEM_SOURCE_DIR@/miniapps/autodiff \
@MFEM_SOURCE_DIR@/miniapps/navier \
@MFEM_SOURCE_DIR@/miniapps/nurbs \
@MFEM_SOURCE_DIR@/miniapps/performance \
+2
View File
@@ -194,6 +194,8 @@ namespace mfem {
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
* - <a class="el" href="par__example_8cpp_source.html">Parallel pLaplacian example using AD</a>: Parallel pLaplacian example
* - <a class="el" href="seq__example_8cpp_source.html">Serial pLaplacian example using AD</a>: Serial pLaplacian example
*
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
*/
+62 -60
View File
@@ -82,78 +82,80 @@ include_directories(BEFORE ${PROJECT_BINARY_DIR})
add_mfem_examples(ALL_EXE_SRCS)
# Add a test for each example
foreach(SRC_FILE ${ALL_EXE_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
if (MFEM_ENABLE_TESTING)
foreach(SRC_FILE ${ALL_EXE_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
set(THIS_TEST_OPTIONS "-no-vis")
if (${TEST_NAME} MATCHES "ex0p?")
set(THIS_TEST_OPTIONS)
endif()
if (${TEST_NAME} MATCHES "ex10p*")
list(APPEND THIS_TEST_OPTIONS "-tf" "5")
elseif(${TEST_NAME} MATCHES "ex15p*")
list(APPEND THIS_TEST_OPTIONS "-e" "1")
elseif(${TEST_NAME} MATCHES "ex27p*")
list(APPEND THIS_TEST_OPTIONS "-dg")
endif()
set(THIS_TEST_OPTIONS "-no-vis")
if (${TEST_NAME} MATCHES "ex0p?")
set(THIS_TEST_OPTIONS)
endif()
if (${TEST_NAME} MATCHES "ex10p*")
list(APPEND THIS_TEST_OPTIONS "-tf" "5")
elseif(${TEST_NAME} MATCHES "ex15p*")
list(APPEND THIS_TEST_OPTIONS "-e" "1")
elseif(${TEST_NAME} MATCHES "ex27p*")
list(APPEND THIS_TEST_OPTIONS "-dg")
endif()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
# Add CUDA/HIP tests.
set(DEVICE_EXAMPLES
# serial examples with device support:
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
# parallel examples with device support:
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p)
set(MFEM_TEST_DEVICE)
if (MFEM_USE_CUDA)
set(MFEM_TEST_DEVICE "cuda")
elseif (MFEM_USE_HIP)
set(MFEM_TEST_DEVICE "hip")
endif()
if (MFEM_TEST_DEVICE)
foreach(TEST_NAME ${DEVICE_EXAMPLES})
set(THIS_TEST_OPTIONS "-no-vis" "-d" "${MFEM_TEST_DEVICE}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_ser
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
elseif (MFEM_USE_MPI)
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_np=${MFEM_MPI_NP}
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
# If STRUMPACK is enabled, add a test run that uses it.
if (MFEM_USE_STRUMPACK)
add_test(NAME ex11p_strumpack_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex11p> "-no-vis" "--strumpack"
${MPIEXEC_POSTFLAGS})
endif()
# Add CUDA/HIP tests.
set(DEVICE_EXAMPLES
# serial examples with device support:
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
# parallel examples with device support:
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p)
set(MFEM_TEST_DEVICE)
if (MFEM_USE_CUDA)
set(MFEM_TEST_DEVICE "cuda")
elseif (MFEM_USE_HIP)
set(MFEM_TEST_DEVICE "hip")
endif()
if (MFEM_TEST_DEVICE)
foreach(TEST_NAME ${DEVICE_EXAMPLES})
set(THIS_TEST_OPTIONS "-no-vis" "-d" "${MFEM_TEST_DEVICE}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
elseif (MFEM_USE_MPI)
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
# If SuperLU_DIST is enabled, add a test run that uses it.
if (MFEM_USE_SUPERLU)
add_test(NAME ex11p_superlu_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
${MPIEXEC_POSTFLAGS})
# If STRUMPACK is enabled, add a test run that uses it.
if (MFEM_USE_STRUMPACK)
add_test(NAME ex11p_strumpack_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex11p> "-no-vis" "--strumpack"
${MPIEXEC_POSTFLAGS})
endif()
# If SuperLU_DIST is enabled, add a test run that uses it.
if (MFEM_USE_SUPERLU)
add_test(NAME ex11p_superlu_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
${MPIEXEC_POSTFLAGS})
endif()
endif()
# Include the examples/amgx directory if AmgX is enabled
+26 -24
View File
@@ -50,30 +50,32 @@ add_mfem_examples(AMGX_EXAMPLES_SRCS ${PFX} copy_amgx_json_files test_amgx)
# which builds the examples and runs:
# ctest -R amgx
# Command line options for the tests.
# Example 1/1p:
set(EX1_TEST_OPTS)
set(EX1P_TEST_OPTS)
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
# Example 1/1p:
set(EX1_TEST_OPTS)
set(EX1P_TEST_OPTS)
# Add the tests: one test per source file.
foreach(SRC_FILE ${AMGX_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
# Add the tests: one test per source file.
foreach(SRC_FILE ${AMGX_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+17 -17
View File
@@ -30,22 +30,22 @@ set(PREFIX caliper_)
add_mfem_examples(CALIPER_EXE_SRCS ${PREFIX})
# Add a test for each example
foreach(SRC_FILE ${CALIPER_EXE_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
set(THIS_TEST_OPTIONS "-no-vis")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
if (MFEM_ENABLE_TESTING)
foreach(SRC_FILE ${CALIPER_EXE_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
set(THIS_TEST_OPTIONS "-no-vis")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+69 -5
View File
@@ -120,8 +120,8 @@ int main(int argc, char *argv[])
// largest number that gives a final mesh with no more than 50,000
// elements.
{
int ref_levels =
(int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
const int NE = Device::IsEnabled() ? 1e5 : 50000.;
const int ref_levels = (int)floor(log(NE/mesh.GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
@@ -171,6 +171,7 @@ int main(int argc, char *argv[])
LinearForm b(&fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
b.Assemble();
// 8. Define the solution vector x as a finite element grid function
@@ -184,7 +185,10 @@ int main(int argc, char *argv[])
// domain integrator.
BilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
// 'Default' E2E kernel
//a.AddDomainIntegrator(new DiffusionIntegrator(one));
// Can be E2E, L2L, libCeed, etc.
a.AddDomainIntegrator(new MassIntegrator(one));
// 10. Assemble the bilinear form and the corresponding linear system,
// applying any necessary transformations such as: eliminating boundary
@@ -197,7 +201,7 @@ int main(int argc, char *argv[])
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
cout << "Size of linear system: " << A->Height() << endl;
//cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (!pa)
@@ -223,10 +227,70 @@ int main(int argc, char *argv[])
ceed::AlgebraicSolver M(a, ess_tdof_list);
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
}
else
/*else
{
OperatorJacobiSmoother M(a, ess_tdof_list);
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
}*/
else
{
const int myid = 0;
const int max_it = 50;
const int print_lvl = -1;
const double rtol = 1e-12;
CGSolver cg;
cg.SetRelTol(rtol);
cg.SetOperator(*A);
// Warm-up CG solve (in case of JIT to avoid timing it)
{
Vector Y(X);
cg.SetMaxIter(2);
cg.SetPrintLevel(-1);
cg.Mult(B, Y);
MFEM_DEVICE_SYNC;
}
// benchmark this problem
{
tic_toc.Clear();
cg.SetMaxIter(max_it);
cg.SetPrintLevel(print_lvl);
{
tic_toc.Start();
cg.Mult(B, X);
MFEM_DEVICE_SYNC;
tic_toc.Stop();
}
}
// Final norm check
const double final_norm = cg.GetFinalNorm();
MFEM_VERIFY(final_norm < sqrt(rtol),
"FinalNorm (" << final_norm << ") Error!");
// Number of iteration check
const int num_iter = cg.GetNumIterations();
MFEM_VERIFY(num_iter <= max_it,
"NumIterations (" << num_iter << ") Error!");
const double rt = tic_toc.RealTime();
const double rt_min = rt, rt_max = rt;
const int dofs = fespace.GetVSize();
const int cg_iter = cg.GetNumIterations();
const double mdofs_max = ((1e-6 * dofs) * cg_iter) / rt_max;
const double mdofs_min = ((1e-6 * dofs) * cg_iter) / rt_min;
if (myid == 0)
{
mfem::out << "Total CG time: " << rt_max << " (" << rt_min << ") sec."
<< std::endl;
mfem::out << "Time per CG step: "
<< rt_max / cg_iter << " ("
<< rt_min / cg_iter << ") sec." << std::endl;
mfem::out << "\033[32m";
mfem::out << "\"DOFs/sec\" in CG: " << mdofs_max << " ("
<< mdofs_min << ") million.";
mfem::out << "\033[m" << std::endl;
}
}
}
else
+13 -12
View File
@@ -149,7 +149,7 @@ void InitialDeformation(const Vector &x, Vector &y);
void InitialVelocity(const Vector &x, Vector &v);
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -376,10 +376,10 @@ int main(int argc, char *argv[])
}
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -389,24 +389,25 @@ void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "solution\n" << *mesh << *field;
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jl\n"; // turn off perspective and light
os << "view 0 0\n"; // view from top
os << "keys jl\n"; // turn off perspective and light
}
out << "keys cm\n"; // show colorbar and mesh
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
out << "pause\n";
os << "keys cm\n"; // show colorbar and mesh
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
os << "pause\n";
}
out << flush;
os << flush;
}
+17 -13
View File
@@ -154,7 +154,8 @@ void InitialDeformation(const Vector &x, Vector &y);
void InitialVelocity(const Vector &x, Vector &v);
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -438,10 +439,11 @@ int main(int argc, char *argv[])
return 0;
}
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -451,25 +453,27 @@ void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "parallel " << mesh->GetNRanks() << " " << mesh->GetMyRank() << "\n";
out << "solution\n" << *mesh << *field;
os << "parallel " << mesh->GetNRanks()
<< " " << mesh->GetMyRank() << "\n";
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jl\n"; // turn off perspective and light
os << "view 0 0\n"; // view from top
os << "keys jl\n"; // turn off perspective and light
}
out << "keys cm\n"; // show colorbar and mesh
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
out << "pause\n";
os << "keys cm\n"; // show colorbar and mesh
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
os << "pause\n";
}
out << flush;
os << flush;
}
+10 -10
View File
@@ -32,7 +32,7 @@ private:
mutable DenseTensor flux;
mutable Vector z;
void GetFlux(const DenseMatrix &state, DenseTensor &flux) const;
void GetFlux(const DenseMatrix &state_, DenseTensor &flux_) const;
public:
FE_Evolution(FiniteElementSpace &vfes_,
@@ -256,26 +256,26 @@ inline double ComputeMaxCharSpeed(const Vector &state, const int dim)
}
// Compute the flux at solution nodes.
void FE_Evolution::GetFlux(const DenseMatrix &x, DenseTensor &flux) const
void FE_Evolution::GetFlux(const DenseMatrix &x_, DenseTensor &flux_) const
{
const int dof = flux.SizeI();
const int dim = flux.SizeJ();
const int flux_dof = flux_.SizeI();
const int flux_dim = flux_.SizeJ();
for (int i = 0; i < dof; i++)
for (int i = 0; i < flux_dof; i++)
{
for (int k = 0; k < num_equation; k++) { state(k) = x(i, k); }
ComputeFlux(state, dim, f);
for (int k = 0; k < num_equation; k++) { state(k) = x_(i, k); }
ComputeFlux(state, flux_dim, f);
for (int d = 0; d < dim; d++)
for (int d = 0; d < flux_dim; d++)
{
for (int k = 0; k < num_equation; k++)
{
flux(i, d, k) = f(k, d);
flux_(i, d, k) = f(k, d);
}
}
// Update max char speed
const double mcs = ComputeMaxCharSpeed(state, dim);
const double mcs = ComputeMaxCharSpeed(state, flux_dim);
if (mcs > max_char_speed) { max_char_speed = mcs; }
}
}
+13 -11
View File
@@ -171,7 +171,7 @@ public:
};
// Visualization driver
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -542,10 +542,10 @@ RubberOperator::~RubberOperator()
// Inline visualization
void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
GridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -555,23 +555,25 @@ void visualize(ostream &out, Mesh *mesh, GridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "solution\n" << *mesh << *field;
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jlA\n"; // turn off perspective and light, +anti-aliasing
os << "view 0 0\n"; // view from top
// turn off perspective and light, +anti-aliasing
os << "keys jlA\n";
}
out << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
os << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
}
out << flush;
os << flush;
}
void ReferenceConfiguration(const Vector &x, Vector &y)
+17 -12
View File
@@ -185,7 +185,8 @@ public:
};
// Visualization driver
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name = NULL,
bool init_vis = false);
@@ -617,10 +618,11 @@ RubberOperator::~RubberOperator()
// Inline visualization
void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
void visualize(ostream &os, ParMesh *mesh,
ParGridFunction *deformed_nodes,
ParGridFunction *field, const char *field_name, bool init_vis)
{
if (!out)
if (!os)
{
return;
}
@@ -630,24 +632,27 @@ void visualize(ostream &out, ParMesh *mesh, ParGridFunction *deformed_nodes,
mesh->SwapNodes(nodes, owns_nodes);
out << "parallel " << mesh->GetNRanks() << " " << mesh->GetMyRank() << "\n";
out << "solution\n" << *mesh << *field;
os << "parallel " << mesh->GetNRanks() << " " << mesh->GetMyRank() <<
"\n";
os << "solution\n" << *mesh << *field;
mesh->SwapNodes(nodes, owns_nodes);
if (init_vis)
{
out << "window_size 800 800\n";
out << "window_title '" << field_name << "'\n";
os << "window_size 800 800\n";
os << "window_title '" << field_name << "'\n";
if (mesh->SpaceDimension() == 2)
{
out << "view 0 0\n"; // view from top
out << "keys jlA\n"; // turn off perspective and light, +anti-aliasing
os << "view 0 0\n"; // view from top
// turn off perspective and light, +anti-aliasing
os << "keys jlA\n";
}
out << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
out << "autoscale value\n"; // update value-range; keep mesh-extents fixed
os << "keys cmA\n"; // show colorbar and mesh, +anti-aliasing
// update value-range; keep mesh-extents fixed
os << "autoscale value\n";
}
out << flush;
os << flush;
}
void ReferenceConfiguration(const Vector &x, Vector &y)
+62 -6
View File
@@ -128,7 +128,7 @@ int main(int argc, char *argv[])
// more than 10,000 elements.
{
int ref_levels =
(int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
(int)floor(log(1000./mesh.GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
@@ -197,6 +197,7 @@ int main(int argc, char *argv[])
ParLinearForm b(&fespace);
ConstantCoefficient one(1.0);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
b.Assemble();
// 10. Define the solution vector x as a parallel finite element grid
@@ -210,7 +211,8 @@ int main(int argc, char *argv[])
// Diffusion domain integrator.
ParBilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
//a.AddDomainIntegrator(new DiffusionIntegrator(one));
a.AddDomainIntegrator(new MassIntegrator(one));
// 12. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
@@ -245,13 +247,67 @@ int main(int argc, char *argv[])
{
prec = new HypreBoomerAMG;
}
const int max_it = 50;
const int print_lvl = -1;
const double rtol = 1e-12;
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
cg.SetRelTol(rtol);
//cg.SetMaxIter(max_it);
//cg.SetPrintLevel(print_lvl);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(*A);
cg.Mult(B, X);
// Warm-up CG solve (in case of JIT to avoid timing it)
{
Vector Y(X);
cg.SetMaxIter(2);
cg.SetPrintLevel(-1);
cg.Mult(B, Y);
MFEM_DEVICE_SYNC;
}
// benchmark this problem
{
tic_toc.Clear();
cg.SetMaxIter(max_it);
cg.SetPrintLevel(print_lvl);
{
tic_toc.Start();
cg.Mult(B, X);
MFEM_DEVICE_SYNC;
tic_toc.Stop();
}
}
// Final norm check
const double final_norm = cg.GetFinalNorm();
MFEM_VERIFY(final_norm < sqrt(rtol),
"FinalNorm (" << final_norm << ") Error!");
// Number of iteration check
const int num_iter = cg.GetNumIterations();
MFEM_VERIFY(num_iter <= max_it,
"NumIterations (" << num_iter << ") Error!");
const double rt = tic_toc.RealTime();
const double rt_min = rt, rt_max = rt;
HYPRE_BigInt dofs = fespace.GlobalTrueVSize();
const int cg_iter = cg.GetNumIterations();
const double mdofs_max = ((1e-6 * dofs) * cg_iter) / rt_max;
const double mdofs_min = ((1e-6 * dofs) * cg_iter) / rt_min;
if (myid == 0)
{
mfem::out << "Total CG time: " << rt_max << " (" << rt_min << ") sec."
<< std::endl;
mfem::out << "Time per CG step: "
<< rt_max / cg_iter << " ("
<< rt_min / cg_iter << ") sec." << std::endl;
mfem::out << "\033[32m";
mfem::out << "\"DOFs/sec\" in CG: " << mdofs_max << " ("
<< mdofs_min << ") million.";
mfem::out << "\033[m" << std::endl;
}
//cg.Mult(B, X);
delete prec;
// 14. Recover the parallel grid function corresponding to X. This is the
+19 -18
View File
@@ -75,7 +75,7 @@ Mesh * GenerateSerialMesh(int ref);
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
double IntegrateBC(const GridFunction &sol, const Array<int> &bdr_marker,
double alpha, double beta, double gamma,
double &err);
double &error);
int main(int argc, char *argv[])
{
@@ -302,26 +302,26 @@ int main(int argc, char *argv[])
{
// Integrate the solution on the Dirichlet boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, err);
double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
bool hom_dbc = (dbc_val == 0.0);
err /= hom_dbc ? 1.0 : fabs(dbc_val);
error /= hom_dbc ? 1.0 : fabs(dbc_val);
mfem::out << "Average of solution on Gamma_dbc:\t"
<< avg << ", \t"
<< (hom_dbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
// to the expected value.
double err, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, err);
double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
bool hom_nbc = (nbc_val == 0.0);
err /= hom_nbc ? 1.0 : fabs(nbc_val);
error /= hom_nbc ? 1.0 : fabs(nbc_val);
mfem::out << "Average of n.Grad(u) on Gamma_nbc:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the homogeneous Neumann boundary and compare to
@@ -330,25 +330,26 @@ int main(int argc, char *argv[])
nbc0_bdr = 0;
nbc0_bdr[3] = 1;
double err, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, err);
double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
bool hom_nbc = true;
mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, err);
double error;
double avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, error);
bool hom_rbc = (rbc_b_val == 0.0);
err /= hom_rbc ? 1.0 : fabs(rbc_b_val);
error /= hom_rbc ? 1.0 : fabs(rbc_b_val);
mfem::out << "Average of n.Grad(u)+a*u on Gamma_rbc:\t"
<< avg << ", \t"
<< (hom_rbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
// 14. Save the refined mesh and the solution. This output can be viewed
@@ -637,11 +638,11 @@ Mesh * GenerateSerialMesh(int ref)
double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
double alpha, double beta, double gamma,
double &err)
double &error)
{
double nrm = 0.0;
double avg = 0.0;
err = 0.0;
error = 0.0;
const bool a_is_zero = alpha == 0.0;
const bool b_is_zero = beta == 0.0;
@@ -705,20 +706,20 @@ double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
// Integrate |alpha * n.Grad(x) + beta * x - gamma|^2
val -= gamma;
err += (val*val) * ip.weight * face_weight;
error += (val*val) * ip.weight * face_weight;
}
}
// Normalize by the length of the boundary
if (std::abs(nrm) > 0.0)
{
err /= nrm;
error /= nrm;
avg /= nrm;
}
// Compute l2 norm of the error in the boundary condition (negative
// quadrature weights may produce negative 'err')
err = (err >= 0.0) ? sqrt(err) : -sqrt(-err);
// quadrature weights may produce negative 'error')
error = (error >= 0.0) ? sqrt(error) : -sqrt(-error);
// Return the average value of alpha * n.Grad(x) + beta * x
return avg;
+17 -16
View File
@@ -75,7 +75,7 @@ Mesh * GenerateSerialMesh(int ref);
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
double IntegrateBC(const ParGridFunction &sol, const Array<int> &bdr_marker,
double alpha, double beta, double gamma,
double &err);
double &error);
int main(int argc, char *argv[])
{
@@ -321,26 +321,26 @@ int main(int argc, char *argv[])
{
// Integrate the solution on the Dirichlet boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, err);
double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
bool hom_dbc = (dbc_val == 0.0);
err /= hom_dbc ? 1.0 : fabs(dbc_val);
error /= hom_dbc ? 1.0 : fabs(dbc_val);
mfem::out << "Average of solution on Gamma_dbc:\t"
<< avg << ", \t"
<< (hom_dbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
// to the expected value.
double err, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, err);
double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
bool hom_nbc = (nbc_val == 0.0);
err /= hom_nbc ? 1.0 : fabs(nbc_val);
error /= hom_nbc ? 1.0 : fabs(nbc_val);
mfem::out << "Average of n.Grad(u) on Gamma_nbc:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) on the homogeneous Neumann boundary and compare to
@@ -349,25 +349,26 @@ int main(int argc, char *argv[])
nbc0_bdr = 0;
nbc0_bdr[3] = 1;
double err, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, err);
double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
bool hom_nbc = true;
mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
<< avg << ", \t"
<< (hom_nbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
{
// Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
// expected value.
double err, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, err);
double error, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val,
error);
bool hom_rbc = (rbc_b_val == 0.0);
err /= hom_rbc ? 1.0 : fabs(rbc_b_val);
error /= hom_rbc ? 1.0 : fabs(rbc_b_val);
mfem::out << "Average of n.Grad(u)+a*u on Gamma_rbc:\t"
<< avg << ", \t"
<< (hom_rbc ? "absolute" : "relative")
<< " error " << err << endl;
<< " error " << error << endl;
}
// 15. Save the refined mesh and the solution in parallel. This output can be
@@ -667,11 +668,11 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
double loc_vals[3];
double &nrm = loc_vals[0];
double &avg = loc_vals[1];
double &err = loc_vals[2];
double &error = loc_vals[2];
nrm = 0.0;
avg = 0.0;
err = 0.0;
error = 0.0;
const bool a_is_zero = alpha == 0.0;
const bool b_is_zero = beta == 0.0;
@@ -735,7 +736,7 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
// Integrate |alpha * n.Grad(x) + beta * x - gamma|^2
val -= gamma;
err += (val*val) * ip.weight * face_weight;
error += (val*val) * ip.weight * face_weight;
}
}
@@ -754,7 +755,7 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
}
// Compute l2 norm of the error in the boundary condition (negative
// quadrature weights may produce negative 'err')
// quadrature weights may produce negative 'error')
glb_err = (glb_err >= 0.0) ? sqrt(glb_err) : -sqrt(-glb_err);
// Return the average value of alpha * n.Grad(x) + beta * x
+2 -2
View File
@@ -167,9 +167,9 @@ int main(int argc, char *argv[])
// 13. Compute error in the solution and its flux
FunctionCoefficient uCoef(uExact);
double err = x.ComputeL2Error(uCoef);
double error = x.ComputeL2Error(uCoef);
cout << "|u - u_h|_2 = " << err << endl;
cout << "|u - u_h|_2 = " << error << endl;
FiniteElementSpace flux_fespace(mesh, &fec, 3);
GridFunction flux(&flux_fespace);
+2 -2
View File
@@ -197,9 +197,9 @@ int main(int argc, char *argv[])
// 15. Compute error in the solution and its flux
FunctionCoefficient uCoef(uExact);
double err = x.ComputeL2Error(uCoef);
double error = x.ComputeL2Error(uCoef);
if (myid == 0) { cout << "|u - u_h|_2 = " << err << endl; }
if (myid == 0) { cout << "|u - u_h|_2 = " << error << endl; }
ParFiniteElementSpace flux_fespace(&pmesh, &fec, 3);
ParGridFunction flux(&flux_fespace);
+2 -2
View File
@@ -255,10 +255,10 @@ int main(int argc, char *argv[])
// 15. Compute and print the L^2 norm of the error.
{
double err = x.ComputeL2Error(E);
double error = x.ComputeL2Error(E);
if (myid == 0)
{
cout << "\n|| E_h - E ||_{L^2} = " << err << '\n' << endl;
cout << "\n|| E_h - E ||_{L^2} = " << error << '\n' << endl;
}
}
+2 -2
View File
@@ -256,10 +256,10 @@ int main(int argc, char *argv[])
// 15. Compute and print the L^2 norm of the error.
{
double err = x.ComputeL2Error(F);
double error = x.ComputeL2Error(F);
if (myid == 0)
{
cout << "\n|| F_h - F ||_{L^2} = " << err << '\n' << endl;
cout << "\n|| F_h - F ||_{L^2} = " << error << '\n' << endl;
}
}
+1
View File
@@ -125,6 +125,7 @@ int main(int argc, char *argv[])
BilinearFormIntegrator *integ = new DiffusionIntegrator(one);
a.AddDomainIntegrator(integ);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
// 7. The solution vector x and the associated finite element grid function
// will be maintained over the AMR iterations. We initialize it to zero.
+1
View File
@@ -202,6 +202,7 @@ int main(int argc, char *argv[])
BilinearFormIntegrator *integ = new DiffusionIntegrator(one);
a.AddDomainIntegrator(integ);
b.AddDomainIntegrator(new DomainLFIntegrator(one));
if (Device::IsEnabled()) { b.SetAssemblyLevel(LinearAssemblyLevel::FULL); }
// 12. The solution vector x and the associated finite element grid function
// will be maintained over the AMR iterations. We initialize it to zero.
+2 -2
View File
@@ -282,10 +282,10 @@ int main(int argc, char *argv[])
delete b;
// 12. Compute and print the L^2 norm of the error.
double err = x.ComputeL2Error(sol_coef);
double error = x.ComputeL2Error(sol_coef);
if (myid == 0)
{
cout << "\nL2 norm of error: " << err << endl;
cout << "\nL2 norm of error: " << error << endl;
}
// 13. Save the refined mesh and the solution. This output can be viewed
+25 -23
View File
@@ -31,29 +31,31 @@ add_mfem_examples(GINKGO_EXAMPLES_SRCS ${PFX} "" test_ginkgo)
# which builds the examples and runs:
# ctest -R ginkgo
# Command line options for the tests.
set(EX1_COMMON_OPTS ex1 -m ../data/star.mesh --use_gko_solver)
set(EX1_TEST_OPTS ${EX9_COMMON_OPTS})
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
set(EX1_COMMON_OPTS ex1 -m ../data/star.mesh --use_gko_solver)
set(EX1_TEST_OPTS ${EX9_COMMON_OPTS})
# Add the tests: one test per source file.
foreach(SRC_FILE ${GINKGO_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
# Add the tests: one test per source file.
foreach(SRC_FILE ${GINKGO_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+27 -25
View File
@@ -33,31 +33,33 @@ add_mfem_examples(HIOP_EXAMPLES_SRCS ${PFX} "" test_hiop)
# which builds the examples and runs:
# ctest -R hiop
# Command line options for the tests.
# Example 9:
set(EX9_COMMON_OPTS -m ../../data/periodic-segment.mesh -p 0 -dt 0.005)
set(EX9_TEST_OPTS ${EX9_COMMON_OPTS} -r 2 )
set(EX9P_TEST_OPTS ${EX9_COMMON_OPTS})
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
# Example 9:
set(EX9_COMMON_OPTS -m ../../data/periodic-segment.mesh -p 0 -dt 0.005)
set(EX9_TEST_OPTS ${EX9_COMMON_OPTS} -r 2 )
set(EX9P_TEST_OPTS ${EX9_COMMON_OPTS})
# Add the tests: one test per source file.
foreach(SRC_FILE ${HIOP_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
# Add the tests: one test per source file.
foreach(SRC_FILE ${HIOP_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} 4
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} 4
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+28 -26
View File
@@ -94,30 +94,32 @@ if (MFEM_USE_SLEPC)
endif()
# Add the tests: one test per command-line-variable.
set(TEST_OPTIONS_VARS
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
if (MFEM_USE_SLEPC)
list(APPEND TEST_OPTIONS_VARS EX11_ARGS_SINV EX11_ARGS_LOBPCG EX11_ARGS_GD)
endif()
foreach(TEST_OPTIONS_VAR ${TEST_OPTIONS_VARS})
string(REGEX REPLACE "^(.+)_ARGS" "\\1" TEST_NAME_UC ${TEST_OPTIONS_VAR})
string(REGEX REPLACE "^([^_]+)" "\\1P" TEST_NAME_UC ${TEST_NAME_UC})
string(TOLOWER ${TEST_NAME_UC} TEST_NAME_FULL)
string(REGEX REPLACE "^([^_]+).*" "\\1" TEST_NAME ${TEST_NAME_FULL})
set(TEST_NAME_FULL ${PFX}${TEST_NAME_FULL})
set(TEST_NAME ${PFX}${TEST_NAME})
set(TEST_OPTIONS "-no-vis" ${${TEST_OPTIONS_VAR}})
# message(STATUS "${TEST_NAME_FULL} --> ${TEST_NAME} ${TEST_OPTIONS}")
# All PETSC tests are parallel.
if (MFEM_USE_MPI)
add_test(NAME ${TEST_NAME_FULL}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
if (MFEM_ENABLE_TESTING)
set(TEST_OPTIONS_VARS
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
if (MFEM_USE_SLEPC)
list(APPEND TEST_OPTIONS_VARS EX11_ARGS_SINV EX11_ARGS_LOBPCG EX11_ARGS_GD)
endif()
endforeach()
foreach(TEST_OPTIONS_VAR ${TEST_OPTIONS_VARS})
string(REGEX REPLACE "^(.+)_ARGS" "\\1" TEST_NAME_UC ${TEST_OPTIONS_VAR})
string(REGEX REPLACE "^([^_]+)" "\\1P" TEST_NAME_UC ${TEST_NAME_UC})
string(TOLOWER ${TEST_NAME_UC} TEST_NAME_FULL)
string(REGEX REPLACE "^([^_]+).*" "\\1" TEST_NAME ${TEST_NAME_FULL})
set(TEST_NAME_FULL ${PFX}${TEST_NAME_FULL})
set(TEST_NAME ${PFX}${TEST_NAME})
set(TEST_OPTIONS "-no-vis" ${${TEST_OPTIONS_VAR}})
# message(STATUS "${TEST_NAME_FULL} --> ${TEST_NAME} ${TEST_OPTIONS}")
# All PETSC tests are parallel.
if (MFEM_USE_MPI)
add_test(NAME ${TEST_NAME_FULL}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+32 -30
View File
@@ -37,37 +37,39 @@ add_mfem_examples(PUMI_EXAMPLES_SRCS ${PFX} "" test_pumi)
# which builds the examples and runs:
# ctest -R pumi
# Command line options for the tests.
# TODO...
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
# TODO...
# Set the number of processors for the parallel examples. The value of
# MFEM_MPI_NP is ignored.
set(EX1_TEST_NP 1)
set(EX1P_TEST_NP 8)
set(EX2_TEST_NP 1)
set(EX6P_TEST_NP 8)
# Set the number of processors for the parallel examples. The value of
# MFEM_MPI_NP is ignored.
set(EX1_TEST_NP 1)
set(EX1P_TEST_NP 8)
set(EX2_TEST_NP 1)
set(EX6P_TEST_NP 8)
# Add the tests: one test per source file.
foreach(SRC_FILE ${PUMI_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
# Add the tests: one test per source file.
foreach(SRC_FILE ${PUMI_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
# All PUMI examples require MPI
if (FALSE)
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
set(TEST_NP ${${UP_TEST_NAME}_TEST_NP})
add_test(NAME ${TEST_NAME}_np=${TEST_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${TEST_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
# All PUMI examples require MPI
if (FALSE)
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
set(TEST_NP ${${UP_TEST_NAME}_TEST_NP})
add_test(NAME ${TEST_NAME}_np=${TEST_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${TEST_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+32 -30
View File
@@ -41,36 +41,38 @@ add_mfem_examples(SUNDIALS_EXAMPLES_SRCS ${PFX} "" test_sundials)
# which builds the examples and runs:
# ctest -R sundials
# Command line options for the tests.
# Example 9: test CVODE with CV_ADAMS (non-stiff implicit) time stepping
set(EX9_COMMON_OPTS -m ../../data/periodic-hexagon.mesh -p 0 -s 7)
set(EX9_TEST_OPTS ${EX9_COMMON_OPTS} -r 2 -dt 0.0018 -vs 25)
set(EX9P_TEST_OPTS ${EX9_COMMON_OPTS} -rp 1 -dt 0.0009 -vs 50)
# Example 10: test CVODE with CV_BDF (stiff implicit) time stepping
set(EX10_COMMON_OPTS -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10)
set(EX10_TEST_OPTS ${EX10_COMMON_OPTS} -r 2)
set(EX10P_TEST_OPTS ${EX10_COMMON_OPTS} -rp 1)
# Example 16: use the default options
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
# Example 9: test CVODE with CV_ADAMS (non-stiff implicit) time stepping
set(EX9_COMMON_OPTS -m ../../data/periodic-hexagon.mesh -p 0 -s 7)
set(EX9_TEST_OPTS ${EX9_COMMON_OPTS} -r 2 -dt 0.0018 -vs 25)
set(EX9P_TEST_OPTS ${EX9_COMMON_OPTS} -rp 1 -dt 0.0009 -vs 50)
# Example 10: test CVODE with CV_BDF (stiff implicit) time stepping
set(EX10_COMMON_OPTS -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10)
set(EX10_TEST_OPTS ${EX10_COMMON_OPTS} -r 2)
set(EX10P_TEST_OPTS ${EX10_COMMON_OPTS} -rp 1)
# Example 16: use the default options
# Add the tests: one test per source file.
foreach(SRC_FILE ${SUNDIALS_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
# Add the tests: one test per source file.
foreach(SRC_FILE ${SUNDIALS_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+26 -25
View File
@@ -32,31 +32,32 @@ add_mfem_examples(SUPERLU_EXAMPLES_SRCS ${PFX} "" test_superlu)
# The SuperLU tests can be run separately using the target "test_superlu"
# which builds the examples and runs:
# ctest -R superlu
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
# Example 1: Test SuperLU on the simple Poisson problem
set(EX1_COMMON_OPTS -m ../../data/star.mesh -p 2)
set(EX1P_TEST_OPTS ${EX1_COMMON_OPTS})
# Command line options for the tests.
# Example 1: Test SuperLU on the simple Poisson problem
set(EX1_COMMON_OPTS -m ../../data/star.mesh -p 2)
set(EX1P_TEST_OPTS ${EX1_COMMON_OPTS})
# Add the tests: one test per source file.
foreach(SRC_FILE ${SUPERLU_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
# Add the tests: one test per source file.
foreach(SRC_FILE ${SUPERLU_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
set(TEST_NAME ${PFX}${TEST_NAME})
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
set(THIS_TEST_OPTIONS "-no-vis")
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
# message(STATUS "Test ${TEST_NAME} options: ${THIS_TEST_OPTIONS}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
else()
add_test(NAME ${TEST_NAME}_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
+21
View File
@@ -21,6 +21,8 @@ set(SRCS
bilininteg_dgtrace_ea.cpp
bilininteg_diffusion_mf.cpp
bilininteg_diffusion_pa.cpp
bilininteg_diffusion_pa_diag_fast.cpp
bilininteg_diffusion_pa_fast.cpp
bilininteg_diffusion_ea.cpp
bilininteg_divergence.cpp
bilininteg_hcurl.cpp
@@ -29,6 +31,11 @@ set(SRCS
bilininteg_gradient.cpp
bilininteg_mass_mf.cpp
bilininteg_mass_pa.cpp
bilininteg_mass_pa_diag.cpp
bilininteg_mass_pa_fast.cpp
bilininteg_mass_pa_fast_amd.cpp
bilininteg_mass_pa_fast_hip.cpp
bilininteg_mass_pa_fast_diag.cpp
bilininteg_mass_ea.cpp
bilininteg_transpose_ea.cpp
bilininteg_vecdiffusion.cpp
@@ -68,7 +75,16 @@ set(SRCS
ceed/operator.cpp
ceed/util.cpp
linearform.cpp
linearform_ext.cpp
lininteg.cpp
lininteg_domain.cpp
lininteg_domain_grad.cpp
lininteg_vector_domain.cpp
lininteg_vector_domain_grad.cpp
lor.cpp
lor_assembly.cpp
lor_assembly_ker.cpp
lor_assembly_ni3.cpp
multigrid.cpp
nonlinearform.cpp
nonlinearform_ext.cpp
@@ -161,7 +177,12 @@ set(HDRS
ceed/operator.hpp
ceed/util.hpp
linearform.hpp
linearform_ext.hpp
lininteg.hpp
lininteg_domain.hpp
lininteg_domain_grad.hpp
lor.hpp
lor_assembly.hpp
multigrid.hpp
nonlinearform.hpp
nonlinearform_ext.hpp
+69 -18
View File
@@ -318,14 +318,31 @@ void PABilinearFormExtension::Assemble()
void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
{
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int integrators_size = integrators.Size();
const int iSz = integrators.Size();
if (elem_restrict && !DeviceCanUseCeed())
// Scan the different action types we need to launch
bool E2E_actions = false,
L2L_actions = false;
for (int i = 0; i < integrators_size; ++i)
{
const ActionType action_type = integrators[i]->GetActionType();
E2E_actions |= action_type == ActionType::E2E;
L2L_actions |= action_type == ActionType::L2L;
}
// typically this is a large vector, so store on device
y.UseDevice(true);
// If E2E kernels are present, do their computation on local vectors
if (E2E_actions && elem_restrict)
{
localY = 0.0;
for (int i = 0; i < iSz; ++i)
for (int i = 0; i < integrators_size; ++i)
{
integrators[i]->AssembleDiagonalPA(localY);
if (integrators[i]->GetActionType() == ActionType::E2E)
{
integrators[i]->AssembleDiagonalPA(localY);
}
}
const ElementRestriction* H1elem_restrict =
dynamic_cast<const ElementRestriction*>(elem_restrict);
@@ -340,11 +357,20 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
}
else
{
y.UseDevice(true); // typically this is a large vector, so store on device
// otherwise, initialize the y output
y = 0.0;
for (int i = 0; i < iSz; ++i)
}
// Continue with the computation of the L2L integrators
if (L2L_actions || !elem_restrict)
{
for (int i = 0; i < integrators_size; ++i)
{
integrators[i]->AssembleDiagonalPA(y);
const ActionType action = integrators[i]->GetActionType();
if (action == ActionType::L2L || !elem_restrict)
{
integrators[i]->AssembleDiagonalPA(y);
}
}
}
}
@@ -383,27 +409,52 @@ void PABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int integrators_size = integrators.Size();
const int iSz = integrators.Size();
if (DeviceCanUseCeed() || !elem_restrict)
// Scan the different action types we need to launch
bool E2E_actions = false,
L2L_actions = false;
for (int i = 0; i < integrators_size; ++i)
{
y.UseDevice(true); // typically this is a large vector, so store on device
y = 0.0;
for (int i = 0; i < iSz; ++i)
{
integrators[i]->AddMultPA(x, y);
}
const ActionType action_type = integrators[i]->GetActionType();
E2E_actions |= action_type == ActionType::E2E;
L2L_actions |= action_type == ActionType::L2L;
}
else
// typically this is a large vector, so store on device
y.UseDevice(true);
// If E2E kernels are present, do their computation on local vectors
if (E2E_actions && elem_restrict)
{
elem_restrict->Mult(x, localX);
localY = 0.0;
for (int i = 0; i < iSz; ++i)
for (int i = 0; i < integrators_size; ++i)
{
integrators[i]->AddMultPA(localX, localY);
if (integrators[i]->GetActionType() == ActionType::E2E)
{
integrators[i]->AddMultPA(localX, localY);
}
}
elem_restrict->MultTranspose(localY, y);
}
else
{
// otherwise, initialize the y output
y = 0.0;
}
// Continue with the computation of the L2L integrators
if (L2L_actions || !elem_restrict)
{
for (int i = 0; i < integrators_size; ++i)
{
if (integrators[i]->GetActionType() == ActionType::L2L || !elem_restrict)
{
integrators[i]->AddMultPA(x, y);
}
}
}
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
const int iFISz = intFaceIntegrators.Size();
+5 -1
View File
@@ -244,6 +244,8 @@ public:
Vector &flux, Vector *d_energy = NULL)
{ return 0.0; }
virtual bool SupportsBatchedLOR() const { return false; }
virtual ~BilinearFormIntegrator() { }
};
@@ -1977,7 +1979,7 @@ private:
const DofToQuad *maps; ///< Not owned
const GeometricFactors *geom; ///< Not owned
int dim, ne, dofs1D, quad1D;
Vector pa_data;
Vector pa_data, CoG;
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
public:
@@ -2058,6 +2060,8 @@ public:
const FiniteElement &test_fe);
bool SupportsCeed() const { return DeviceCanUseCeed(); }
bool SupportsBatchedLOR() const { return true; }
};
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
+2 -2
View File
@@ -768,8 +768,8 @@ void SmemPAConvectionApply3D(const int ne,
void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// Assumes tensor-product elements
Mesh *mesh = fes.GetMesh();
const FiniteElement &el = *fes.GetFE(0);
+338 -185
View File
@@ -9,18 +9,45 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#define MFEM_DEBUG_COLOR 87
#include "../general/debug.hpp"
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/diffusion.hpp"
#include <string>
#define MFEM_NVTX_COLOR Olive
#include "../general/nvtx.hpp"
using namespace std;
namespace mfem
{
void NDK_PADiffusionAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symm,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y);
// PA Diffusion Integrator
void NDK_PADiffusionApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const Vector &CoG,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
// OCCA 2D Assemble kernel
#ifdef MFEM_USE_OCCA
static void OccaPADiffusionSetup2D(const int D1D,
@@ -349,10 +376,115 @@ static void PADiffusionSetup(const int dim,
}
}
////////////////////////////////////////////////////////////////////////////////
template<typename T> MFEM_HOST_DEVICE inline
void HouseholderReflect(T *A, const T *v,
const T b, const int m, const int n,
const int row, const int col)
{
for (int j = 0; j < n; j++)
{
T w = A[0*row + j*col];
for (int i = 1; i < m; i++) { w += v[i] * A[i*row + j*col]; }
A[0*row + j*col] -= b * w;
for (int i = 1; i < m; i++) { A[i*row + j*col] -= b * w * v[i]; }
}
}
template<int Q1D, typename T> MFEM_HOST_DEVICE inline
void HouseholderApplyQ(T *A, const T *Q, const T *tau,
const int k, const int row, const int col)
{
T v[Q1D];
for (int ii=0; ii<k; ii++)
{
const int i = k-1-ii;
for (int j = i+1; j < Q1D; j++) { v[j] = Q[j*k+i]; }
// Apply Householder reflector (I - tau v v^T) coG^T
HouseholderReflect(&A[i*row], &v[i], tau[i], Q1D-i, Q1D, row, col);
}
}
template<int D1D, int Q1D, typename T> MFEM_HOST_DEVICE inline
void QRFactorization(T *mat, T *tau)
{
T v[Q1D];
DeviceMatrix B(mat, D1D, Q1D);
for (int i = 0; i < D1D; i++)
{
// Calculate Householder vector, magnitude
T sigma = 0.0;
v[i] = B(i,i);
for (int j = i + 1; j < Q1D; j++)
{
v[j] = B(i,j);
sigma += v[j] * v[j];
}
T norm = std::sqrt(v[i]*v[i] + sigma); // norm of v[i:m]
T Rii = -copysign(norm, v[i]);
v[i] -= Rii;
// norm of v[i:m] after modification above and scaling below
// norm = sqrt(v[i]*v[i] + sigma) / v[i];
// tau = 2 / (norm*norm)
tau[i] = 2 * v[i]*v[i] / (v[i]*v[i] + sigma);
for (int j=i+1; j<Q1D; j++) { v[j] /= v[i]; }
// Apply Householder reflector to lower right panel
HouseholderReflect(&mat[i*D1D+i+1], &v[i], tau[i],
Q1D-i, D1D-i-1, D1D, 1);
// Save v
B(i,i) = Rii;
for (int j=i+1; j<Q1D; j++) { B(i,j) = v[j]; }
}
}
template<int D1D, int Q1D>
void GetCollocatedGrad(const ConstDeviceMatrix &b,
const ConstDeviceMatrix &g,
const DeviceMatrix &CoG)
{
double tau[Q1D];
double B1d[Q1D*D1D];
double G1d[Q1D*D1D];
DeviceMatrix B(B1d, D1D, Q1D);
DeviceMatrix G(G1d, D1D, Q1D);
for (int d = 0; d < D1D; d++)
{
for (int q = 0; q < Q1D; q++)
{
B(d,q) = b(q,d);
G(d,q) = g(q,d);
}
}
QRFactorization<D1D,Q1D>(B1d, tau);
// Apply Rinv, colograd1d = grad1d Rinv
for (int i = 0; i < Q1D; i++)
{
CoG(0,i) = G(0,i)/B(0,0);
for (int j = 1; j < D1D; j++)
{
CoG(j,i) = G(j,i);
for (int k = 0; k < j; k++) { CoG(j,i) -= B(j,k)*CoG(k,i); }
CoG(j,i) /= B(j,j);
}
for (int j = D1D; j < Q1D; j++) { CoG(j,i) = 0.0; }
}
// Apply Qtranspose, colograd = colograd Qtranspose
HouseholderApplyQ<Q1D>((double*)CoG, B1d, tau, D1D, 1, Q1D);
}
////////////////////////////////////////////////////////////////////////////////
void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// If device options allow fast kernels, set the action type to L2L
action_type =
(Device::FastKernelsEnabled())?
ActionType::L2L: // all fast kernel are L2L
ActionType::E2E; // default is E2E
// Assuming the same element type
fespace = &fes;
Mesh *mesh = fes.GetMesh();
@@ -365,6 +497,7 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
MFEM_VERIFY(!VQ && !MQ && !SMQ,
"Only scalar coefficient supported for DiffusionIntegrator"
" with libCEED");
action_type = ActionType::L2L;
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
return;
}
@@ -490,6 +623,40 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
}
}
if (Device::FastKernelsEnabled())
{
NVTX("CoG");
const int D1D = dofs1D;
const int Q1D = quad1D;
const int id = (D1D << 4) | Q1D;
CoG.SetSize(Q1D*Q1D);
CoG.UseDevice(true);
assert(CoG.UseDevice());
void (*KoG)(const ConstDeviceMatrix &b,
const ConstDeviceMatrix &g,
const DeviceMatrix &CoG) = nullptr;
switch (id) // orders 1~8
{
case 0x23: KoG=GetCollocatedGrad<2,3>; break; // 1
case 0x34: KoG=GetCollocatedGrad<3,4>; break; // 2
case 0x45: KoG=GetCollocatedGrad<4,5>; break; // 3
case 0x56: KoG=GetCollocatedGrad<5,6>; break; // 4
case 0x67: KoG=GetCollocatedGrad<6,7>; break; // 5
case 0x78: KoG=GetCollocatedGrad<7,8>; break; // 6
//case 0x89: KoG=GetCollocatedGrad<8,9>; break; // 7
//case 0x9A: KoG=GetCollocatedGrad<9,10>; break; // 8
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
KoG(ConstDeviceMatrix(maps->B.HostRead(),Q1D,D1D),
ConstDeviceMatrix(maps->G.HostRead(),Q1D,D1D),
DeviceMatrix(CoG.HostReadWrite(),Q1D,Q1D));
}
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne, mt);
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeffDim, ne, ir->GetWeights(),
geom->J, coeff, pa_data);
@@ -869,6 +1036,7 @@ static void SmemPADiffusionDiagonal3D(const int NE,
}
}
}
MFEM_SYNC_THREAD;
}
}
});
@@ -925,6 +1093,11 @@ void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
{
ceedOp->GetDiagonal(diag);
}
else if (Device::FastKernelsEnabled())
{
NDK_PADiffusionAssembleDiagonal(dim, dofs1D, quad1D, ne, symmetric,
fespace, maps, pa_data, diag);
}
else
{
if (pa_data.Size()==0) { AssemblePA(*fespace); }
@@ -1180,6 +1353,7 @@ static void SmemPADiffusionApply2D(const int NE,
auto D = Reshape(d_.Read(), Q1D*Q1D, symmetric ? 3 : 4, NE);
auto x = Reshape(x_.Read(), D1D, D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
@@ -1220,6 +1394,7 @@ static void SmemPADiffusionApply2D(const int NE,
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
@@ -1545,6 +1720,7 @@ static void SmemPADiffusionApply3D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
MFEM_NVTX;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
@@ -1556,7 +1732,7 @@ static void SmemPADiffusionApply3D(const int NE,
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -1585,118 +1761,103 @@ static void SmemPADiffusionApply3D(const int NE,
double (*QDD0)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+0);
double (*QDD1)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+1);
double (*QDD2)[MD1][MD1] = (double (*)[MD1][MD1]) (sm0+2);
MFEM_FOREACH_THREAD(dy,y,D1D)
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
MFEM_FOREACH_THREAD(dx,x,D1D)
{
X[dz][dy][dx] = x(dx,dy,dz,e);
}
}
MFEM_FOREACH_THREAD(qx,x,Q1D)
}
MFEM_SYNC_THREAD;
if (MFEM_THREAD_ID(z) == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
const int i = qi(qx,dy,Q1D);
const int j = dj(qx,dy,D1D);
const int k = qk(qx,dy,Q1D);
const int l = dl(qx,dy,D1D);
B[i][j] = b(qx,dy);
G[k][l] = g(qx,dy) * sign(qx,dy);
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
const int i = qi(qx,dy,Q1D);
const int j = dj(qx,dy,D1D);
const int k = qk(qx,dy,Q1D);
const int l = dl(qx,dy,D1D);
B[i][j] = b(qx,dy);
G[k][l] = g(qx,dy) * sign(qx,dy);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
MFEM_FOREACH_THREAD(dy,y,D1D)
{
double u[D1D], v[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++) { u[dz] = v[dz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dx = 0; dx < D1D; ++dx)
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
double u = 0.0, v = 0.0;
MFEM_UNROLL(MD1)
for (int dx = 0; dx < D1D; ++dx)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
const double coords = X[dz][dy][dx];
u += coords * B[i][j];
v += coords * G[k][l] * s;
}
DDQ0[dz][dy][qx] = u;
DDQ1[dz][dy][qx] = v;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u = 0.0, v = 0.0, w = 0.0;
MFEM_UNROLL(MD1)
for (int dy = 0; dy < D1D; ++dy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
u += DDQ1[dz][dy][qx] * B[i][j];
v += DDQ0[dz][dy][qx] * G[k][l] * s;
w += DDQ0[dz][dy][qx] * B[i][j];
}
DQQ0[dz][qy][qx] = u;
DQQ1[dz][qy][qx] = v;
DQQ2[dz][qy][qx] = w;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u = 0.0, v = 0.0, w = 0.0;
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
const double coords = X[dz][dy][dx];
u[dz] += coords * B[i][j];
v[dz] += coords * G[k][l] * s;
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
DDQ0[dz][dy][qx] = u[dz];
DDQ1[dz][dy][qx] = v[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D], v[D1D], w[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++) { u[dz] = v[dz] = w[dz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dy = 0; dy < D1D; ++dy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] += DDQ1[dz][dy][qx] * B[i][j];
v[dz] += DDQ0[dz][dy][qx] * G[k][l] * s;
w[dz] += DDQ0[dz][dy][qx] * B[i][j];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
DQQ0[dz][qy][qx] = u[dz];
DQQ1[dz][qy][qx] = v[dz];
DQQ2[dz][qy][qx] = w[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[Q1D], v[Q1D], w[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++) { u[qz] = v[qz] = w[qz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
const int i = qi(qz,dz,Q1D);
const int j = dj(qz,dz,D1D);
const int k = qk(qz,dz,Q1D);
const int l = dl(qz,dz,D1D);
const double s = sign(qz,dz);
u[qz] += DQQ0[dz][qy][qx] * B[i][j];
v[qz] += DQQ1[dz][qy][qx] * B[i][j];
w[qz] += DQQ2[dz][qy][qx] * G[k][l] * s;
u += DQQ0[dz][qy][qx] * B[i][j];
v += DQQ1[dz][qy][qx] * B[i][j];
w += DQQ2[dz][qy][qx] * G[k][l] * s;
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
const double O11 = d(qx,qy,qz,0,e);
const double O12 = d(qx,qy,qz,1,e);
const double O13 = d(qx,qy,qz,2,e);
@@ -1706,9 +1867,9 @@ static void SmemPADiffusionApply3D(const int NE,
const double O31 = symmetric ? O13 : d(qx,qy,qz,6,e);
const double O32 = symmetric ? O23 : d(qx,qy,qz,7,e);
const double O33 = symmetric ? d(qx,qy,qz,5,e) : d(qx,qy,qz,8,e);
const double gX = u[qz];
const double gY = v[qz];
const double gZ = w[qz];
const double gX = u;
const double gY = v;
const double gZ = w;
QQQ0[qz][qy][qx] = (O11*gX) + (O12*gY) + (O13*gZ);
QQQ1[qz][qy][qx] = (O21*gX) + (O22*gY) + (O23*gZ);
QQQ2[qz][qy][qx] = (O31*gX) + (O32*gY) + (O33*gZ);
@@ -1716,115 +1877,98 @@ static void SmemPADiffusionApply3D(const int NE,
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(d,y,D1D)
if (MFEM_THREAD_ID(z) == 0)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
MFEM_FOREACH_THREAD(d,y,D1D)
{
const int i = qi(q,d,Q1D);
const int j = dj(q,d,D1D);
const int k = qk(q,d,Q1D);
const int l = dl(q,d,D1D);
Bt[j][i] = b(q,d);
Gt[l][k] = g(q,d) * sign(q,d);
MFEM_FOREACH_THREAD(q,x,Q1D)
{
const int i = qi(q,d,Q1D);
const int j = dj(q,d,D1D);
const int k = qk(q,d,Q1D);
const int l = dl(q,d,D1D);
Bt[j][i] = b(q,d);
Gt[l][k] = g(q,d) * sign(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
double u[Q1D], v[Q1D], w[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = v[qz] = w[qz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qx = 0; qx < Q1D; ++qx)
MFEM_FOREACH_THREAD(dx,x,D1D)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
double u = 0.0, v = 0.0, w = 0.0;
MFEM_UNROLL(MQ1)
for (int qx = 0; qx < Q1D; ++qx)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
u += QQQ0[qz][qy][qx] * Gt[l][k] * s;
v += QQQ1[qz][qy][qx] * Bt[j][i];
w += QQQ2[qz][qy][qx] * Bt[j][i];
}
QQD0[qz][qy][dx] = u;
QQD1[qz][qy][dx] = v;
QQD2[qz][qy][dx] = w;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
u += QQD0[qz][qy][dx] * Bt[j][i];
v += QQD1[qz][qy][dx] * Gt[l][k] * s;
w += QQD2[qz][qy][dx] * Bt[j][i];
}
QDD0[qz][dy][dx] = u;
QDD1[qz][dy][dx] = v;
QDD2[qz][dy][dx] = w;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ0[qz][qy][qx] * Gt[l][k] * s;
v[qz] += QQQ1[qz][qy][qx] * Bt[j][i];
w[qz] += QQQ2[qz][qy][qx] * Bt[j][i];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QQD0[qz][qy][dx] = u[qz];
QQD1[qz][qy][dx] = v[qz];
QQD2[qz][qy][dx] = w[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D], v[Q1D], w[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = v[qz] = w[qz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qy = 0; qy < Q1D; ++qy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD0[qz][qy][dx] * Bt[j][i];
v[qz] += QQD1[qz][qy][dx] * Gt[l][k] * s;
w[qz] += QQD2[qz][qy][dx] * Bt[j][i];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QDD0[qz][dy][dx] = u[qz];
QDD1[qz][dy][dx] = v[qz];
QDD2[qz][dy][dx] = w[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[D1D], v[D1D], w[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = v[dz] = w[dz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
const int i = qi(qz,dz,Q1D);
const int j = dj(qz,dz,D1D);
const int k = qk(qz,dz,Q1D);
const int l = dl(qz,dz,D1D);
const double s = sign(qz,dz);
u[dz] += QDD0[qz][dy][dx] * Bt[j][i];
v[dz] += QDD1[qz][dy][dx] * Bt[j][i];
w[dz] += QDD2[qz][dy][dx] * Gt[l][k] * s;
u += QDD0[qz][dy][dx] * Bt[j][i];
v += QDD1[qz][dy][dx] * Bt[j][i];
w += QDD2[qz][dy][dx] * Gt[l][k] * s;
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
y(dx,dy,dz,e) += (u[dz] + v[dz] + w[dz]);
y(dx,dy,dz,e) += (u + v + w);
}
}
}
MFEM_SYNC_THREAD;
});
}
@@ -1864,8 +2008,11 @@ static void PADiffusionApply(const int dim,
switch (ID)
{
case 0x22: return SmemPADiffusionApply2D<2,2,16>(NE,symm,B,G,D,X,Y);
case 0x23: return SmemPADiffusionApply2D<2,3,16>(NE,symm,B,G,D,X,Y);
case 0x33: return SmemPADiffusionApply2D<3,3,16>(NE,symm,B,G,D,X,Y);
case 0x34: return SmemPADiffusionApply2D<3,4,16>(NE,symm,B,G,D,X,Y);
case 0x44: return SmemPADiffusionApply2D<4,4,8>(NE,symm,B,G,D,X,Y);
case 0x45: return SmemPADiffusionApply2D<4,5,8>(NE,symm,B,G,D,X,Y);
case 0x55: return SmemPADiffusionApply2D<5,5,8>(NE,symm,B,G,D,X,Y);
case 0x66: return SmemPADiffusionApply2D<6,6,4>(NE,symm,B,G,D,X,Y);
case 0x77: return SmemPADiffusionApply2D<7,7,4>(NE,symm,B,G,D,X,Y);
@@ -1902,6 +2049,12 @@ void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
{
ceedOp->AddMult(x, y);
}
else if (Device::FastKernelsEnabled())
{
NDK_PADiffusionApply(dim, dofs1D, quad1D, ne, CoG,
fespace, maps,
pa_data, x, y);
}
else
{
PADiffusionApply(dim, dofs1D, quad1D, ne, symmetric,
+186
View File
@@ -0,0 +1,186 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#define MFEM_NVTX_COLOR Pink
#include "../general/nvtx.hpp"
#define MFEM_DEBUG_COLOR 206
#include "../general/debug.hpp"
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/diffusion.hpp"
using namespace std;
namespace mfem
{
// Shared memory PA Diffusion Diagonal 3D kernel
template<int D1D, int Q1D>
static void NDK_SmemPADiffusionDiag3D(const int ndofs,
const int NE,
const bool symmetric,
const int *map_,
const double *b_,
const double *g_,
const double *d_,
double *y_)
{
MFEM_NVTX;
constexpr int DIM = 3;
const auto MAP = Reshape(map_, D1D,D1D,D1D, NE);
auto b = Reshape(b_, Q1D, D1D);
auto g = Reshape(g_, Q1D, D1D);
auto D = Reshape(d_, Q1D*Q1D*Q1D, symmetric ? 6 : 9, NE);
auto Y = Reshape(y_, D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
MFEM_SHARED double BG[2][Q1D*D1D];
double (*B)[D1D] = (double (*)[D1D]) (BG+0);
double (*G)[D1D] = (double (*)[D1D]) (BG+1);
MFEM_SHARED double QQD[Q1D][Q1D][D1D];
MFEM_SHARED double QDD[Q1D][D1D][D1D];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
G[q][d] = g(q,d);
}
}
}
MFEM_SYNC_THREAD;
for (int i = 0; i < DIM; ++i)
{
for (int j = 0; j < DIM; ++j)
{
// first tensor contraction, along z direction
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
const int q = qx + (qy + qz * Q1D) * Q1D;
const int ksym = j >= i ?
3 - (3-i)*(2-i)/2 + j:
3 - (3-j)*(2-j)/2 + i;
const int k = symmetric ? ksym : (i*DIM) + j;
const double O = D(q,k,e);
const double Bz = B[qz][dz];
const double Gz = G[qz][dz];
const double L = i==2 ? Gz : Bz;
const double R = j==2 ? Gz : Bz;
QQD[qx][qy][dz] += L * O * R;
}
}
}
}
MFEM_SYNC_THREAD;
// second tensor contraction, along y direction
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
const double By = B[qy][dy];
const double Gy = G[qy][dy];
const double L = i==1 ? Gy : By;
const double R = j==1 ? Gy : By;
QDD[qx][dy][dz] += L * QQD[qx][qy][dz] * R;
}
}
}
}
MFEM_SYNC_THREAD;
// third tensor contraction, along x direction
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
for (int qx = 0; qx < Q1D; ++qx)
{
const double Bx = B[qx][dx];
const double Gx = G[qx][dx];
const double L = i==0 ? Gx : Bx;
const double R = j==0 ? Gx : Bx;
const double lvr = L * QDD[qx][dy][dz] * R;
const int gid = MAP(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y[idx], lvr);
}
}
}
}
MFEM_SYNC_THREAD;
}
}
});
}
void NDK_PADiffusionAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symm,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y)
{
MFEM_NVTX;
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const int *m = ER->GatherMap().Read();
const double *b = maps->B.Read();
const double *g = maps->G.Read();
const double *d = D.Read();
double *y = Y.ReadWrite();
if (dim == 2) { assert(false); }
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return NDK_SmemPADiffusionDiag3D<2,2>(ND,NE,symm,m,b,g,d,y);
case 0x23: return NDK_SmemPADiffusionDiag3D<2,3>(ND,NE,symm,m,b,g,d,y);
case 0x34: return NDK_SmemPADiffusionDiag3D<3,4>(ND,NE,symm,m,b,g,d,y);
case 0x45: return NDK_SmemPADiffusionDiag3D<4,5>(ND,NE,symm,m,b,g,d,y);
case 0x46: return NDK_SmemPADiffusionDiag3D<4,6>(ND,NE,symm,m,b,g,d,y);
case 0x56: return NDK_SmemPADiffusionDiag3D<5,6>(ND,NE,symm,m,b,g,d,y);
case 0x67: return NDK_SmemPADiffusionDiag3D<6,7>(ND,NE,symm,m,b,g,d,y);
case 0x78: return NDK_SmemPADiffusionDiag3D<7,8>(ND,NE,symm,m,b,g,d,y);
//case 0x89: return NDK_SmemPADiffusionDiag3D<8,9>(ND,NE,symm,m,b,g,d,y);
//case 0x9A: return NDK_SmemPADiffusionDiag3D<9,10>(ND,NE,symm,m,b,g,d,y);
default: MFEM_ABORT("Not implemented!");
}
}
MFEM_ABORT("Unknown kernel.");
}
} // namespace mfem
+332
View File
@@ -0,0 +1,332 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#define MFEM_NVTX_COLOR Pink
#include "../general/nvtx.hpp"
#define MFEM_DEBUG_COLOR 206
#include "../general/debug.hpp"
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/diffusion.hpp"
using namespace std;
namespace mfem
{
////////////////////////////////////////////////////////////////////////////////
template<int D1D, int Q1D, int NBZ, int NBK> static
MFEM_GLOBAL MFEM_LAUNCH_BOUNDS(Q1D*Q1D*NBZ,NBK)
void NDK_PADiffApply(const int NE,
const int *MAP,
const double *B,
const double *G,
const double *D,
const double *X,
double *Y)
{
double r_qt, r_q[Q1D];
MFEM_SHARED double s_B[D1D][Q1D];
MFEM_SHARED double s_G[Q1D][Q1D];
MFEM_SHARED double s_Iq[NBZ][Q1D][Q1D][Q1D];
MFEM_SHARED double s_Gqr[NBZ][Q1D][Q1D];
MFEM_SHARED double s_Gqs[NBZ][Q1D][Q1D];
for (int be = MFEM_BLOCK_ID(x); be < (NE+NBZ-1)/NBZ; be += MFEM_GRID_DIM(x))
{
const int tz = MFEM_THREAD_ID(z);
const int e = be * NBZ + tz;
if (e>=NE) { return; }
// Scatter X
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
if (tz == 0) { s_G[j][i] = G[i+Q1D*j]; } // ok with init
if (tz == 0 && j<D1D) { s_B[j][i] = B[i+Q1D*j]; } // ok
if (j<D1D && i<D1D)
{
MFEM_UNROLL(D1D)
for (int k = 0; k < D1D; k++)
{
const int gid = MAP[e*D1D*D1D*D1D + k*D1D*D1D + j*D1D + i];
const int idx = gid >= 0 ? gid : -1 - gid;
r_q[k] = X[idx];
}
}
}
}
MFEM_SYNC_THREAD;
// Grad1X
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k)
{
double u = 0.0;
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c) { u += s_B[c][k] * r_q[c]; }
s_Iq[tz][k][b][a] = u;
}
}
}
MFEM_SYNC_THREAD;
// Grad1Y
MFEM_FOREACH_THREAD(k,y,Q1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b) { r_q[b] = s_Iq[tz][k][b][a]; }
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j)
{
double u = 0.0;
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b) { u += s_B[b][j] * r_q[b]; }
s_Iq[tz][k][j][a] = u;
}
}
}
MFEM_SYNC_THREAD;
// Grad1Z
MFEM_FOREACH_THREAD(k,y,Q1D)
{
MFEM_FOREACH_THREAD(j,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a) { r_q[a] = s_Iq[tz][k][j][a]; }
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i)
{
double u = 0.0;
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a) { u += s_B[a][i] * r_q[a]; }
s_Iq[tz][k][j][i] = u;
}
}
}
MFEM_SYNC_THREAD;
// Flush
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int k = 0; k < Q1D; ++k) { r_q[k] = 0.0; }
}
}
MFEM_SYNC_THREAD;
// Q-Function
MFEM_UNROLL(Q1D)
for (int k = 0; k < Q1D; ++k)
{
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
double qr = 0.0, qs = 0.0, qt = 0.0;
MFEM_UNROLL(Q1D)
for (int m = 0; m < Q1D; ++m)
{
const double Dim = s_G[i][m];
const double Djm = s_G[j][m];
const double Dkm = s_G[k][m];
qr += Dim * s_Iq[tz][k][j][m];
qs += Djm * s_Iq[tz][k][m][i];
qt += Dkm * s_Iq[tz][m][j][i];
}
//(d, Q1D,Q1D,Q1D, 6, NE);
const int ebase = e * 6*Q1D*Q1D*Q1D;
const int gbase = i + j*Q1D + k*Q1D*Q1D;
const double D00 = D[0*Q1D*Q1D*Q1D + gbase + ebase];
const double D01 = D[1*Q1D*Q1D*Q1D + gbase + ebase];
const double D02 = D[2*Q1D*Q1D*Q1D + gbase + ebase];
const double D11 = D[3*Q1D*Q1D*Q1D + gbase + ebase];
const double D12 = D[4*Q1D*Q1D*Q1D + gbase + ebase];
const double D22 = D[5*Q1D*Q1D*Q1D + gbase + ebase];
s_Gqr[tz][j][i] = D00*qr + D01*qs + D02*qt;
s_Gqs[tz][j][i] = D01*qr + D11*qs + D12*qt;
r_qt = D02*qr + D12*qs + D22*qt;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
double Aqtmp = 0.0;
MFEM_UNROLL(Q1D)
for (int m = 0; m < Q1D; ++m)
{
const double Dmi = s_G[m][i];
const double Dmj = s_G[m][j];
const double Dkm = s_G[k][m];
Aqtmp += Dmi * s_Gqr[tz][j][m];
Aqtmp += Dmj * s_Gqs[tz][m][i];
r_q[m] += Dkm * r_qt;
}
r_q[k] += Aqtmp;
}
}
MFEM_SYNC_THREAD;
}
// GradZT
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
double u = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { u += s_B[c][k] * r_q[k]; }
s_Iq[tz][c][j][i] = u;
}
}
}
MFEM_SYNC_THREAD;
// GradYT
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_q[j] = s_Iq[tz][c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double u = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { u += s_B[b][j] * r_q[j]; }
s_Iq[tz][c][b][i] = u;
}
}
}
MFEM_SYNC_THREAD;
// GradXT
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_q[i] = s_Iq[tz][c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double u = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { u += s_B[a][i] * r_q[i]; }
s_Iq[tz][c][b][a] = u;
}
}
}
MFEM_SYNC_THREAD;
// Gather
MFEM_FOREACH_THREAD(j,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,D1D)
{
MFEM_UNROLL(D1D)
for (int k = 0; k < D1D; k++)
{
const int gid = MAP[e*D1D*D1D*D1D + k*D1D*D1D + j*D1D + i];
const int idx = gid >= 0 ? gid : -1 - gid;
const double output = s_Iq[tz][k][j][i];
AtomicAdd(Y[idx], output);
}
}
}
MFEM_SYNC_THREAD;
}
}
void NDK_PADiffusionApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const Vector &CoG,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y)
{
//dbg();
MFEM_NVTX;
assert(dim == 3);
const double *b = maps->B.Read();
const double *d = D.Read();
const double *x = X.Read();
double *y = Y.ReadWrite();
const int id = (D1D << 4) | Q1D;
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction *ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const int *map = ER->GatherMap().Read();
const auto dM = Reshape(map, D1D,D1D,D1D, NE);
const auto dB = Reshape(b, Q1D,D1D);
const auto dG = Reshape(CoG.Read(), Q1D,Q1D);
const auto dD = Reshape(d, Q1D,Q1D,Q1D, 6, NE);
const auto dX = Reshape(x, ND);
auto dY = Reshape(y, ND);
void (*Ker)(const int NE,
const int *MAP,
const double *B,
const double *G,
const double *D,
const double *X,
double *Y) = nullptr;
int NBZ = 1;
switch (id) // orders 1~8
{
case 0x23: Ker=NDK_PADiffApply<2,3,16,5>; NBZ=16; break; // 1
case 0x34: Ker=NDK_PADiffApply<3,4,8,6>; NBZ=8; break; // 2
case 0x45: Ker=NDK_PADiffApply<4,5,4,4>; NBZ=4; break; // 3
case 0x56: Ker=NDK_PADiffApply<5,6,4,3>; NBZ=4; break; // 4
case 0x67: Ker=NDK_PADiffApply<6,7,1,3>; break; // 5
case 0x78: Ker=NDK_PADiffApply<7,8,1,0>; break; // 6
//case 0x89: Ker=NDK_PADiffApply<8,9,1,0>; break; // 7
//case 0x9A: Ker=NDK_PADiffApply<9,10,1,1>; break; // 8
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
MFEM_CONTRACT_VAR(NBZ);
MFEM_LAUNCH_KERNEL(Ker,(NE+NBZ-1)/NBZ,dim3(Q1D,Q1D,NBZ),0,NE,dM,dB,dG,dD,dX,dY);
}
} // namespace mfem
+257 -345
View File
@@ -19,14 +19,49 @@ using namespace std;
namespace mfem
{
// Forward declaration of non-deterministic 'fast' kernels
void NDK_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
void NDK_AMD_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
void NDK_HIP_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y);
// PA Mass Integrator
// PA Mass Assemble kernel
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
const MemoryType mt = (memory_type == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : memory_type;
// If device options allow fast kernels, set the action type to L2L
action_type =
Device::FastKernelsEnabled() ? ActionType::L2L : ActionType::E2E;
// Assuming the same element type
fespace = &fes;
@@ -38,7 +73,7 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q, action_type);
return;
}
dim = mesh->Dimension();
@@ -154,328 +189,6 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
}
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal2D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QD[MQ1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dy = 0; dy < D1D; ++dy)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
}
}
}
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
for (int qx = 0; qx < Q1D; ++qx)
{
Y(dx,dy,e) += B(qx, dx) * B(qx, dx) * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
static void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QDZ[NBZ][MQ1][MD1];
double (*QD)[MD1] = (double (*)[MD1])(QDZ + tidz);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B[qy][dy] * B[qy][dy] * D(qx, qy, e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
for (int qx = 0; qx < Q1D; ++qx)
{
// might need absolute values on next line
Y(dx,dy,e) += B[qx][dx] * B[qx][dx] * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal3D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QQD[MQ1][MQ1][MD1];
double QDD[MQ1][MD1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int dz = 0; dz < D1D; ++dz)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
}
}
}
}
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B(qy, dy) * B(qy, dy) * QQD[qx][qy][dz];
}
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B(qx, dx) * B(qx, dx) * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void SmemPAMassAssembleDiagonal3D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QQD[MQ1][MQ1][MD1];
MFEM_SHARED double QDD[MQ1][MD1][MD1];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
static void PAMassAssembleDiagonal(const int dim, const int D1D,
const int Q1D, const int NE,
const Array<double> &B,
const Vector &D,
Vector &Y)
{
if (dim == 2)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
{
if (DeviceCanUseCeed())
{
ceedOp->GetDiagonal(diag);
}
else
{
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
}
}
#ifdef MFEM_USE_OCCA
// OCCA PA Mass Apply 2D kernel
static void OccaPAMassApply2D(const int D1D,
@@ -1151,6 +864,159 @@ static void SmemPAMassApply3D(const int NE,
});
}
template<int D1D, int Q1D>
void SmemPAMassApply3D_v1(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
MFEM_CONTRACT_VAR(d1d);
MFEM_CONTRACT_VAR(q1d);
const auto B = Reshape(b_.Read(), Q1D,D1D);
const auto D = Reshape(d_.Read(), Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x_.Read(), D1D,D1D,D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double u[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
s_B[qx][dy] = B(qx,dy);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B(qx,dx);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += X(dx,dy,dz,e) * Bx;
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[dz][dy][qx];
MFEM_UNROLL(D1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] += zyX * s_B[qy][dy]; }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation, Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] += zYX * s_B[qz][dz]; }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
s_q[qz][qy][qx] = u[qz] * D(qx,qy,qz,e);
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * s_B[qz][dz]; }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * s_B[qy][dy]; }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * s_B[qx][dx]; }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double output = u[dx];
Y(dx,dy,dz,e) += output;
}
}
}
MFEM_SYNC_THREAD;
});
}
static void PAMassApply(const int dim,
const int D1D,
const int Q1D,
@@ -1201,30 +1067,47 @@ static void PAMassApply(const int dim,
}
else if (dim == 3)
{
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
static int ini = 0;
if (!ini++) { printf("\033[33mkernel #0x%x\033[m\n",id); }
switch (id)
{
case 0x22: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
case 0x23: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
case 0x24: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
case 0x26: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
case 0x34: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
case 0x35: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
case 0x36: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
case 0x37: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
case 0x45: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
case 0x46: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
case 0x48: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
case 0x56: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
case 0x58: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
case 0x67: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
case 0x78: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
case 0x89: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
case 0x9A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
default: return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
case 0x123: return SmemPAMassApply3D_v1<2,3>(NE,B,Bt,D,X,Y);
case 0x124: return SmemPAMassApply3D_v1<2,4>(NE,B,Bt,D,X,Y);
case 0x134: return SmemPAMassApply3D_v1<3,4>(NE,B,Bt,D,X,Y);
case 0x136: return SmemPAMassApply3D_v1<3,6>(NE,B,Bt,D,X,Y);
case 0x145: return SmemPAMassApply3D_v1<4,5>(NE,B,Bt,D,X,Y);
case 0x148: return SmemPAMassApply3D_v1<4,8>(NE,B,Bt,D,X,Y);
case 0x156: return SmemPAMassApply3D_v1<5,6>(NE,B,Bt,D,X,Y);
case 0x158: return SmemPAMassApply3D_v1<5,8>(NE,B,Bt,D,X,Y);
case 0x167: return SmemPAMassApply3D_v1<6,7>(NE,B,Bt,D,X,Y);
case 0x178: return SmemPAMassApply3D_v1<7,8>(NE,B,Bt,D,X,Y);
case 0x022: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
case 0x023: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
case 0x024: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
case 0x026: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
case 0x034: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
case 0x035: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
case 0x036: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
case 0x037: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
case 0x045: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
case 0x046: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
case 0x048: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
case 0x056: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
case 0x058: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
case 0x067: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
case 0x078: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
case 0x089: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
case 0x09A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
default: break; //return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Unknown kernel.");
MFEM_ABORT("Unknown kernel 0x" << std::hex << id);
}
void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
@@ -1233,6 +1116,35 @@ void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
{
ceedOp->AddMult(x, y);
}
else if (Device::FastKernelsEnabled())
{
const int version = Device::KernelsVersion();
MFEM_VERIFY(version < 4 || version==7, "Unsupported version!");
if (version == 3) // AMD
{
NDK_AMD_PAMassApply(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, x, y);
}
// 4 E-vector
// 5 fused
// 6 MMA
else if (version == 7) // HIP
{
NDK_HIP_PAMassApply(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, x, y);
}
// 0 legacy
// 1 fast
// 2 libP
else
{
NDK_PAMassApply(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, x, y);
}
}
else
{
PAMassApply(dim, dofs1D, quad1D, ne, maps->B, maps->Bt, pa_data, x, y);
+358
View File
@@ -0,0 +1,358 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "ceed/mass.hpp"
using namespace std;
namespace mfem
{
void NDK_PAMassAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y);
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal2D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QD[MQ1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dy = 0; dy < D1D; ++dy)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
}
}
}
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
for (int qx = 0; qx < Q1D; ++qx)
{
Y(dx,dy,e) += B(qx, dx) * B(qx, dx) * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
static void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QDZ[NBZ][MQ1][MD1];
double (*QD)[MD1] = (double (*)[MD1])(QDZ + tidz);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QD[qx][dy] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QD[qx][dy] += B[qy][dy] * B[qy][dy] * D(qx, qy, e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
for (int qx = 0; qx < Q1D; ++qx)
{
// might need absolute values on next line
Y(dx,dy,e) += B[qx][dx] * B[qx][dx] * QD[qx][dy];
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void PAMassAssembleDiagonal3D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
double QQD[MQ1][MQ1][MD1];
double QDD[MQ1][MD1][MD1];
for (int qx = 0; qx < Q1D; ++qx)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int dz = 0; dz < D1D; ++dz)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
}
}
}
}
for (int qx = 0; qx < Q1D; ++qx)
{
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B(qy, dy) * B(qy, dy) * QQD[qx][qy][dz];
}
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B(qx, dx) * B(qx, dx) * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
static void SmemPAMassAssembleDiagonal3D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
const auto b = Reshape(b_.Read(), Q1D, D1D);
const auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
MFEM_SHARED double B[MQ1][MD1];
MFEM_SHARED double QQD[MQ1][MQ1][MD1];
MFEM_SHARED double QDD[MQ1][MD1][MD1];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
}
Y(dx, dy, dz, e) += t;
}
}
}
});
}
static void PAMassAssembleDiagonal(const int dim, const int D1D,
const int Q1D, const int NE,
const Array<double> &B,
const Vector &D,
Vector &Y)
{
if (dim == 2)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
{
if (DeviceCanUseCeed())
{
ceedOp->GetDiagonal(diag);
}
else if (Device::FastKernelsEnabled())
{
NDK_PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne,
fespace, maps,
pa_data, diag);
}
else
{
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
}
}
} // namespace mfem
+684
View File
@@ -0,0 +1,684 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '0' non-deterministic 3D mass kernel
template<int D1D, int Q1D>
void NDK_SmemPAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto b = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
MFEM_SHARED double sDQ[Q1D*Q1D];
double (*B)[D1D] = (double (*)[D1D]) sDQ;
double (*Bt)[Q1D] = (double (*)[Q1D]) sDQ;
MFEM_SHARED double sm0[Q1D*Q1D*Q1D];
MFEM_SHARED double sm1[Q1D*Q1D*Q1D];
double (*DDQ)[D1D][Q1D] = (double (*)[D1D][Q1D]) sm1;
double (*DQQ)[Q1D][Q1D] = (double (*)[Q1D][Q1D]) sm0;
double (*QQQ)[Q1D][Q1D] = (double (*)[Q1D][Q1D]) sm1;
double (*QQD)[Q1D][D1D] = (double (*)[Q1D][D1D]) sm0;
double (*QDD)[D1D][D1D] = (double (*)[D1D][D1D]) sm1;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
B[qx][dy] = b(qx,dy);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
if (map)
{
const int gid = MAP(dx, dy, dz, e);
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] += X(idx) * B[qx][dx];
}
else
{
u[dz] += X1(dx,dy,dz,e) * B[qx][dx];
}
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
DDQ[dz][dy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] += DDQ[dz][dy][qx] * B[qy][dy];
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; dz++)
{
DQQ[dz][qy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[Q1D];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] = 0;
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] += DQQ[dz][qy][qx] * B[qz][dz];
}
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; qz++)
{
QQQ[qz][qy][qx] = u[qz] * D(qx,qy,qz,e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[d][q] = b(q,d);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ[qz][qy][qx] * Bt[dx][qx];
}
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qz][qy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD[qz][qy][dx] * Bt[dy][qy];
}
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
QDD[qz][dy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[D1D];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] = 0;
}
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += QDD[qz][dy][dx] * Bt[dz][qz];
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
if (map)
{
const int gid = MAP(dx, dy, dz, e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), u[dz]);
}
else
{
Y1(dx,dy,dz,e) += u[dz];
}
}
}
}
MFEM_SYNC_THREAD;
});
}
// Fast '1' non-deterministic 3D mass kernel
// Smem version melded toward registers + BZ-batch
template<int D1D, int Q1D, int NBZ>
void NDK_SmRgPAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(be, (NE+NBZ-1)/NBZ, Q1D, Q1D, NBZ,
{
double u[Q1D];
const int tz = MFEM_THREAD_ID(z);
const int e = be * MFEM_THREAD_SIZE(z) + tz;
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[NBZ][Q1D][Q1D][Q1D];
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
if (tz == 0) { s_B[qx][dy] = B(qx,dy); }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B(qx,dx);
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const int gid = map ? MAP(dx,dy,dz,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] += (map ? X(idx) : X1(dx,dy,dz,e)) * Bx;
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] += zyX * s_B[qy][dy]; }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[tz][dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation, Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] += zYX * s_B[qz][dz]; }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
s_q[tz][qz][qy][qx] = u[qz] * D(qx,qy,qz,e);
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[tz][qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * s_B[qz][dz]; }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * s_B[qy][dy]; }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[tz][dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * s_B[qx][dx]; }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double output = u[dx];
if (map)
{
const int gid = MAP(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), output);
}
else
{
Y1(dx,dy,dz,e) += output;
}
}
}
}
MFEM_SYNC_THREAD;
});
}
// Fast '2' non-deterministic 3D mass kernel
// Smem version with registers
template<int D1D, int Q1D>
void NDK_RegsPAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D,D1D);
const auto D = Reshape(d_, Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double r_wk[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
// Load s_B, load X in shared memory
MFEM_FOREACH_THREAD(b,y,Q1D)
{
MFEM_FOREACH_THREAD(a,x,Q1D)
{
if (a<D1D) { s_B[b][a] = B(b,a); }
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = 0.0; }
if (a<D1D && b<D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
s_q[c][b][a] = map ? X(idx) : X1(a,b,c,e);
}
}
}
}
MFEM_SYNC_THREAD;
// Interpolate in X direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(b,x,Q1D)
{
if (b<D1D && c<D1D)
{
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
const double q_cba = s_q[c][b][a];
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] += s_B[i][a]*q_cba; }
}
// reg => s_mem
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { s_q[c][b][i] = r_wk[i]; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = 0.0; }
}
}
MFEM_SYNC_THREAD;
// Interpolate in Y direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
if (c<D1D)
{
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
const double q_cbi = s_q[c][b][i];
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] += s_B[j][b]*q_cbi; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { s_q[c][j][i] = r_wk[j]; }
}
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] = 0.0; }
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
// Interpolate in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cji = s_q[c][j][i];
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] += s_B[k][c]*q_cji; }
}
// Scale by Jacobian and integration weights
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] *= D(i,j,k,e); }
// Project back in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
double q_cji = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { q_cji += s_B[k][c] * r_wk[k]; }
s_q[c][j][i] = q_cji;
}
}
}
MFEM_SYNC_THREAD;
// Project back in Y direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = s_q[c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double q_cbi = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { q_cbi += s_B[j][b] * r_wk[j]; }
s_q[c][b][i] = q_cbi;
}
}
}
MFEM_SYNC_THREAD;
// Project back in X direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = s_q[c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double q_cba = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { q_cba += s_B[i][a] * r_wk[i]; }
s_q[c][b][a] = q_cba;
}
}
}
MFEM_SYNC_THREAD;
// Save back to memory
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cba = s_q[c][b][a];
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(map?Y(idx):Y1(a,b,c,e), q_cba);
}
}
}
MFEM_SYNC_THREAD;
});
}
void NDK_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y)
{
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
const int *map = ER ? ER->GatherMap().Read() : nullptr;
const double *b = maps->B.Read();
const double *d = D.Read();
const double *x = X.Read();
double *y = Y.ReadWrite();
assert(dim == 3);
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
//printf("\033[32mkernel #0x%x\033[m\n",id); fflush(0);
switch (id) // orders 1~6
{
// Fast '0': Legacy non-deterministic 3D mass kernel
case 0x023: return NDK_SmemPAMassApply3D<2,3>(ND,NE,map,b,d,x,y);
case 0x024: return NDK_SmemPAMassApply3D<2,4>(ND,NE,map,b,d,x,y);
case 0x034: return NDK_SmemPAMassApply3D<3,4>(ND,NE,map,b,d,x,y);
case 0x036: return NDK_SmemPAMassApply3D<3,6>(ND,NE,map,b,d,x,y);
case 0x045: return NDK_SmemPAMassApply3D<4,5>(ND,NE,map,b,d,x,y);
case 0x046: return NDK_SmemPAMassApply3D<4,6>(ND,NE,map,b,d,x,y);
case 0x048: return NDK_SmemPAMassApply3D<4,8>(ND,NE,map,b,d,x,y);
case 0x056: return NDK_SmemPAMassApply3D<5,6>(ND,NE,map,b,d,x,y);
case 0x058: return NDK_SmemPAMassApply3D<5,8>(ND,NE,map,b,d,x,y);
case 0x067: return NDK_SmemPAMassApply3D<6,7>(ND,NE,map,b,d,x,y);
case 0x078: return NDK_SmemPAMassApply3D<7,8>(ND,NE,map,b,d,x,y);
// Fast '1': Legacy & half smem non-deterministic 3D mass kernel + Z-batch
case 0x123: return NDK_SmRgPAMassApply3D<2,3,32>(ND,NE,map,b,d,x,y);//1
case 0x124: return NDK_SmRgPAMassApply3D<2,4,16>(ND,NE,map,b,d,x,y);
case 0x134: return NDK_SmRgPAMassApply3D<3,4,16>(ND,NE,map,b,d,x,y);//2
case 0x136: return NDK_SmRgPAMassApply3D<3,6,8>(ND,NE,map,b,d,x,y);
case 0x145: return NDK_SmRgPAMassApply3D<4,5,4>(ND,NE,map,b,d,x,y);//3
case 0x146: return NDK_SmRgPAMassApply3D<4,6,4>(ND,NE,map,b,d,x,y);
case 0x148: return NDK_SmRgPAMassApply3D<4,8,4>(ND,NE,map,b,d,x,y);
case 0x156: return NDK_SmRgPAMassApply3D<5,6,4>(ND,NE,map,b,d,x,y);//4
case 0x158: return NDK_SmRgPAMassApply3D<5,8,1>(ND,NE,map,b,d,x,y);
case 0x167: return NDK_SmRgPAMassApply3D<6,7,1>(ND,NE,map,b,d,x,y);//5
case 0x178: return NDK_SmRgPAMassApply3D<7,8,1>(ND,NE,map,b,d,x,y);//6
// Fast '2': libP non-deterministic 3D mass kernel
case 0x223: return NDK_RegsPAMassApply3D<2,3>(ND,NE,map,b,d,x,y);
case 0x224: return NDK_RegsPAMassApply3D<2,4>(ND,NE,map,b,d,x,y);
case 0x234: return NDK_RegsPAMassApply3D<3,4>(ND,NE,map,b,d,x,y);
case 0x236: return NDK_RegsPAMassApply3D<3,6>(ND,NE,map,b,d,x,y);
case 0x245: return NDK_RegsPAMassApply3D<4,5>(ND,NE,map,b,d,x,y);
case 0x246: return NDK_RegsPAMassApply3D<4,6>(ND,NE,map,b,d,x,y);
case 0x248: return NDK_RegsPAMassApply3D<4,8>(ND,NE,map,b,d,x,y);
case 0x256: return NDK_RegsPAMassApply3D<5,6>(ND,NE,map,b,d,x,y);
case 0x258: return NDK_RegsPAMassApply3D<5,8>(ND,NE,map,b,d,x,y);
case 0x267: return NDK_RegsPAMassApply3D<6,7>(ND,NE,map,b,d,x,y);
case 0x278: return NDK_RegsPAMassApply3D<7,8>(ND,NE,map,b,d,x,y);
// Fast '3': libP + AMD specific non-deterministic 3D mass kernel
// in bilininteg_mass_pa_fast_amd.cpp
default: break;
}
MFEM_ABORT("Unknown kernel 0x" << std::hex << id);
}
} // namespace mfem
+250
View File
@@ -0,0 +1,250 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '3' non-deterministic 3D mass kernel
template<int D1D, int Q1D>
void NDK_AMD_PAMassApply3D(const int ndofs,
const int NE,
const int *map,
const double *b_,
const double *d_,
const double *x_,
double *y_)
{
const auto MAP = Reshape(map, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D,D1D);
const auto D = Reshape(d_, Q1D,Q1D,Q1D, NE);
const auto X = Reshape(x_, ndofs);
const auto X1 = Reshape(x_, D1D,D1D,D1D, NE);
auto Y = Reshape(y_, ndofs);
auto Y1 = Reshape(y_, D1D,D1D,D1D, NE);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double r_wk[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
// Load s_B, load X in shared memory
MFEM_FOREACH_THREAD(b,y,Q1D)
{
MFEM_FOREACH_THREAD(a,x,Q1D)
{
if (a<D1D) { s_B[b][a] = B(b,a); }
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = 0.0; }
if (a<D1D && b<D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
s_q[c][b][a] = map ? X(idx) : X1(a,b,c,e);
}
}
}
}
MFEM_SYNC_THREAD;
// Interpolate in X direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(b,x,Q1D)
{
if (b<D1D && c<D1D)
{
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
const double q_cba = s_q[c][b][a];
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] += s_B[i][a]*q_cba; }
}
// reg => s_mem
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { s_q[c][b][i] = r_wk[i]; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = 0.0; }
}
}
MFEM_SYNC_THREAD;
// Interpolate in Y direction
MFEM_FOREACH_THREAD(c,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
if (c<D1D)
{
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
const double q_cbi = s_q[c][b][i];
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] += s_B[j][b]*q_cbi; }
}
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { s_q[c][j][i] = r_wk[j]; }
}
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] = 0.0; }
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
// Interpolate in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cji = s_q[c][j][i];
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] += s_B[k][c]*q_cji; }
}
// Scale by Jacobian and integration weights
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] *= D(i,j,k,e); }
// Project back in Z direction
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
double q_cji = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { q_cji += s_B[k][c] * r_wk[k]; }
s_q[c][j][i] = q_cji;
}
}
}
MFEM_SYNC_THREAD;
// Project back in Y direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { r_wk[j] = s_q[c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double q_cbi = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j) { q_cbi += s_B[j][b] * r_wk[j]; }
s_q[c][b][i] = q_cbi;
}
}
}
MFEM_SYNC_THREAD;
// Project back in X direction
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { r_wk[i] = s_q[c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double q_cba = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i) { q_cba += s_B[i][a] * r_wk[i]; }
s_q[c][b][a] = q_cba;
}
}
}
MFEM_SYNC_THREAD;
// Save back to memory
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cba = s_q[c][b][a];
const int gid = map ? MAP(a,b,c,e) : 0;
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(map?Y(idx):Y1(a,b,c,e), q_cba);
}
}
}
MFEM_SYNC_THREAD;
});
}
void NDK_AMD_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
const Vector &X,
Vector &Y)
{
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
const int *map = ER ? ER->GatherMap().Read() : nullptr;
const double *b = maps->B.Read();
const double *d = D.Read();
const double *x = X.Read();
double *y = Y.ReadWrite();
assert(dim == 3);
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
//printf("\033[32mkernel #0x%x\033[m\n",id); fflush(0);
switch (id) // orders 1~6
{
// Fast '3': libP + AMD specific non-deterministic 3D mass kernel
case 0x323: return NDK_AMD_PAMassApply3D<2,3>(ND,NE,map,b,d,x,y);
case 0x324: return NDK_AMD_PAMassApply3D<2,4>(ND,NE,map,b,d,x,y);
case 0x334: return NDK_AMD_PAMassApply3D<3,4>(ND,NE,map,b,d,x,y);
case 0x336: return NDK_AMD_PAMassApply3D<3,6>(ND,NE,map,b,d,x,y);
case 0x345: return NDK_AMD_PAMassApply3D<4,5>(ND,NE,map,b,d,x,y);
case 0x346: return NDK_AMD_PAMassApply3D<4,6>(ND,NE,map,b,d,x,y);
case 0x348: return NDK_AMD_PAMassApply3D<4,8>(ND,NE,map,b,d,x,y);
case 0x356: return NDK_AMD_PAMassApply3D<5,6>(ND,NE,map,b,d,x,y);
case 0x358: return NDK_AMD_PAMassApply3D<5,8>(ND,NE,map,b,d,x,y);
case 0x367: return NDK_AMD_PAMassApply3D<6,7>(ND,NE,map,b,d,x,y);
case 0x378: return NDK_AMD_PAMassApply3D<7,8>(ND,NE,map,b,d,x,y);
default: break;
}
MFEM_ABORT("Unknown kernel 0x" << std::hex << id);
}
} // namespace mfem
+269
View File
@@ -0,0 +1,269 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '0' non-deterministic 3D mass diag kernel
template<int D1D, int Q1D>
static void NDK_SmemPAMassDiag3D(const int ndofs,
const int NE,
const int *map_,
const double *b_,
const double *d_,
double *y_)
{
const auto MAP = Reshape(map_, D1D,D1D,D1D, NE);
const auto b = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_, ndofs);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
{
const int tidz = MFEM_THREAD_ID(z);
MFEM_SHARED double B[Q1D][D1D];
MFEM_SHARED double QQD[Q1D][Q1D][D1D];
MFEM_SHARED double QDD[Q1D][D1D][D1D];
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][d] = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
QQD[qx][qy][dz] = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
QDD[qx][dy][dz] = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
}
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double t = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
}
const int gid = MAP(dx, dy, dz, e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), t);
}
}
}
});
}
// Fast non-deterministic 3D mass diag kernel
// Less smem version with registers
template<int D1D, int Q1D>
static void NDK_RegsPAMassDiag3D(const int ndofs,
const int NE,
const int *map_,
const double *b_,
const double *d_,
double *y_)
{
const auto MAP = Reshape(map_, D1D,D1D,D1D, NE);
const auto B = Reshape(b_, Q1D, D1D);
const auto D = Reshape(d_, Q1D, Q1D, Q1D, NE);
auto Y = Reshape(y_, ndofs);
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
double r_wk[Q1D];
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[Q1D][Q1D][Q1D];
MFEM_FOREACH_THREAD(d,y,Q1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
if (d<D1D) { s_B[q][d] = B(q,d); }
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,y,Q1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k) { r_wk[k] = D(i,j,k,e); }
for (int c=0; c<D1D; ++c)
{
double q_cji = 0.0;
MFEM_UNROLL(Q1D)
for (int k=0; k<Q1D; ++k)
{
const double Bkc = s_B[k][c];
q_cji += Bkc * Bkc * r_wk[k];
}
s_q[c][j][i] = q_cji;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(i,x,Q1D)
{
for (int j=0; j<Q1D; ++j) { r_wk[j] = s_q[c][j][i]; }
MFEM_UNROLL(D1D)
for (int b=0; b<D1D; ++b)
{
double q_cbi = 0.0;
MFEM_UNROLL(Q1D)
for (int j=0; j<Q1D; ++j)
{
const double Bjb = s_B[j][b];
q_cbi += Bjb * Bjb * r_wk[j];
}
s_q[c][b][i] = q_cbi;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(c,y,D1D)
{
MFEM_FOREACH_THREAD(b,x,D1D)
{
for (int i=0; i<Q1D; ++i) { r_wk[i] = s_q[c][b][i]; }
MFEM_UNROLL(D1D)
for (int a=0; a<D1D; ++a)
{
double q_cba = 0.0;
MFEM_UNROLL(Q1D)
for (int i=0; i<Q1D; ++i)
{
const double Bia = s_B[i][a];
q_cba += Bia * Bia * r_wk[i];
}
s_q[c][b][a] = q_cba;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(b,y,D1D)
{
MFEM_FOREACH_THREAD(a,x,D1D)
{
MFEM_UNROLL(D1D)
for (int c=0; c<D1D; ++c)
{
const double q_cba = s_q[c][b][a];
const int gid = MAP(a,b,c,e);
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y(idx), q_cba);
}
}
}
MFEM_SYNC_THREAD;
});
}
void NDK_PAMassAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &D,
Vector &Y)
{
const int ND = fes->GetNDofs();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const int *map = ER->GatherMap().Read();
const double *b = maps->B.Read();
const double *d = D.Read();
double *y = Y.ReadWrite();
assert(dim == 3);
const int ver = Device::KernelsVersion();
const int vid = (ver << 8) | (D1D << 4) | Q1D;
// Fast '0' non-deterministic 3D mass diag kernel
switch (vid) // orders 1~6
{
case 0x023: return NDK_SmemPAMassDiag3D<2,3>(ND,NE,map,b,d,y);
case 0x024: return NDK_SmemPAMassDiag3D<2,4>(ND,NE,map,b,d,y);
case 0x034: return NDK_SmemPAMassDiag3D<3,4>(ND,NE,map,b,d,y);
case 0x045: return NDK_SmemPAMassDiag3D<4,5>(ND,NE,map,b,d,y);
case 0x046: return NDK_SmemPAMassDiag3D<4,6>(ND,NE,map,b,d,y);
case 0x056: return NDK_SmemPAMassDiag3D<5,6>(ND,NE,map,b,d,y);
case 0x058: return NDK_SmemPAMassDiag3D<5,8>(ND,NE,map,b,d,y);
case 0x067: return NDK_SmemPAMassDiag3D<6,7>(ND,NE,map,b,d,y);
case 0x078: return NDK_SmemPAMassDiag3D<7,8>(ND,NE,map,b,d,y);
default: break;
}
// all other versions should fold back through these kernels
switch ((D1D << 4) | Q1D)
{
case 0x23: return NDK_RegsPAMassDiag3D<2,3>(ND,NE,map,b,d,y);
case 0x24: return NDK_RegsPAMassDiag3D<2,4>(ND,NE,map,b,d,y);
case 0x34: return NDK_RegsPAMassDiag3D<3,4>(ND,NE,map,b,d,y);
case 0x45: return NDK_RegsPAMassDiag3D<4,5>(ND,NE,map,b,d,y);
case 0x46: return NDK_RegsPAMassDiag3D<4,6>(ND,NE,map,b,d,y);
case 0x56: return NDK_RegsPAMassDiag3D<5,6>(ND,NE,map,b,d,y);
case 0x58: return NDK_RegsPAMassDiag3D<5,8>(ND,NE,map,b,d,y);
case 0x67: return NDK_RegsPAMassDiag3D<6,7>(ND,NE,map,b,d,y);
case 0x78: return NDK_RegsPAMassDiag3D<7,8>(ND,NE,map,b,d,y);
default: break;
}
MFEM_ABORT("Unknown kernel 0x" << std::hex << vid);
}
} // namespace mfem
+224
View File
@@ -0,0 +1,224 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../general/forall.hpp"
#include "gridfunc.hpp"
#include "restriction.hpp"
using namespace std;
namespace mfem
{
// Fast '7' HIP
template<int D1D, int Q1D, int NBZ=1, int NBK=1> MFEM_GLOBAL static
//MFEM_LAUNCH_BOUNDS(Q1D*Q1D*NBZ,NBK)
void HIP_PAMassApply(const int NE,
const int* MAP,
const double* B,
const double* D,
const double* X,
double* Y)
{
double u[Q1D];
const int tz = MFEM_THREAD_ID(z);
MFEM_SHARED double s_B[Q1D][D1D];
MFEM_SHARED double s_q[NBZ][Q1D][Q1D][Q1D];
for (int be = MFEM_BLOCK_ID(x); be < (NE+NBZ-1)/NBZ; be += MFEM_GRID_DIM(x))
{
const int e = be * NBZ + tz;
if (e>=NE) { return; }
// Load input, B & X interpolation
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
if (tz == 0) { s_B[qx][dy] = B[qx+Q1D*dy]; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double Bx = B[qx+Q1D*dx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const int gid = MAP[e*D1D*D1D*D1D+dz*D1D*D1D+dy*D1D+dx];
const int idx = gid >= 0 ? gid : -1 - gid;
u[dz] = fma(X[idx], Bx, u[dz]);
}
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][dy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Y interpolation
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = 0.0; }
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { u[qy] = fma(zyX,s_B[qy][dy],u[qy]); }
}
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy) { s_q[tz][dz][qy][qx] = u[qy]; }
}
}
MFEM_SYNC_THREAD;
// Z interpolation, Q-function & Zt projection
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
// Z interpolation
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = fma(zYX,s_B[qz][dz],u[qz]); }
}
// Q-function
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const int idx = e*Q1D*Q1D*Q1D + qx + qy*Q1D + qz*Q1D*Q1D;
s_q[tz][qz][qy][qx] = u[qz] * D[idx];
}
// Zt projection
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = s_q[tz][qz][qy][qx];
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { u[dz] = fma(ZYX,s_B[qz][dz],u[dz]); }
}
MFEM_UNROLL(D1D)
for (int dz = 0; dz < D1D; ++dz) { s_q[tz][dz][qy][qx] = u[dz]; }
}
}
MFEM_SYNC_THREAD;
// Yt projection
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = s_q[tz][dz][qy][qx];
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { u[dy] = fma(zYX,s_B[qy][dy],u[dy]); }
}
MFEM_UNROLL(D1D)
for (int dy = 0; dy < D1D; ++dy) { s_q[tz][dz][dy][qx] = u[dy]; }
}
}
MFEM_SYNC_THREAD;
// Xt projection & save output
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
MFEM_UNROLL(Q1D)
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = s_q[tz][dz][dy][qx];
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx) { u[dx] = fma(zyX,s_B[qx][dx],u[dx]); }
}
MFEM_UNROLL(D1D)
for (int dx = 0; dx < D1D; ++dx)
{
const double output = u[dx];
const int gid = MAP[e*D1D*D1D*D1D+dz*D1D*D1D+dy*D1D+dx];
const int idx = gid >= 0 ? gid : -1 - gid;
AtomicAdd(Y[idx], output);
}
}
}
MFEM_SYNC_THREAD;
}
}
void NDK_HIP_PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const FiniteElementSpace *fes,
const DofToQuad *maps,
const Vector &d,
const Vector &x,
Vector &y)
{
assert(dim == 3);
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes->GetElementRestriction(ordering);
const ElementRestriction *ER = dynamic_cast<const ElementRestriction*>(ERop);
assert(ER);
const auto M = ER->GatherMap().Read();
const double *B = maps->B.Read();
const double *D = d.Read();
const double *X = x.Read();
double *Y = y.ReadWrite();
void (*Ker)(const int NE,
const int *M,
const double *B,
const double *D,
const double *X,
double *Y) = nullptr;
const int ver = Device::KernelsVersion();
const int id = (ver << 8) | (D1D << 4) | Q1D;
switch (id) // orders 1~8
{
case 0x723: Ker=HIP_PAMassApply<2,3>; break; // 1
case 0x734: Ker=HIP_PAMassApply<3,4>; break; // 2
case 0x745: Ker=HIP_PAMassApply<4,5>; break; // 3
case 0x756: Ker=HIP_PAMassApply<5,6>; break; // 4
case 0x767: Ker=HIP_PAMassApply<6,7>; break; // 5
case 0x778: Ker=HIP_PAMassApply<7,8>; break; // 6
case 0x789: Ker=HIP_PAMassApply<8,9>; break; // 7
case 0x79A: Ker=HIP_PAMassApply<9,10>; break; // 8
default: MFEM_ABORT("Unknown kernel 0x" << std::hex << id << std::dec);
}
MFEM_LAUNCH_KERNEL(Ker,NE,dim3(Q1D,Q1D,1),0,NE,M,B,D,X,Y);
}
} // namespace mfem
+1 -1
View File
@@ -34,7 +34,7 @@ void VectorMassIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q, action_type);
return;
}
dim = mesh->Dimension();
+3 -1
View File
@@ -48,7 +48,8 @@ struct MassOperatorInfo : public OperatorInfo
PAMassIntegrator::PAMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
mfem::Coefficient *Q)
mfem::Coefficient *Q,
mfem::ActionType &action_type)
: PAIntegrator()
{
#ifdef MFEM_USE_CEED
@@ -57,6 +58,7 @@ PAMassIntegrator::PAMassIntegrator(const mfem::FiniteElementSpace &fes,
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
action_type = mfem::ActionType::L2L;
}
MFMassIntegrator::MFMassIntegrator(const mfem::FiniteElementSpace &fes,
+2 -1
View File
@@ -27,7 +27,8 @@ class PAMassIntegrator : public PAIntegrator
public:
PAMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
mfem::Coefficient *Q);
mfem::Coefficient *Q,
mfem::ActionType &action_type);
};
/// Represent a MassIntegrator with AssemblyLevel::None using libCEED.
+2
View File
@@ -65,6 +65,8 @@ void RemoveBasisAndRestriction(const mfem::FiniteElementSpace *fes)
itr++;
}
}
#else
MFEM_CONTRACT_VAR(fes);
#endif
}
+267 -7
View File
@@ -21,6 +21,33 @@ namespace mfem
using namespace std;
// Given an ElementTransformation and IntegrationPoint in a refined mesh,
// return the ElementTransformation of the parent coarse element, and set
// coarse_ip to the location of the original ip within the coarse element.
ElementTransformation *RefinedToCoarse(
Mesh &coarse_mesh, const ElementTransformation &T,
const IntegrationPoint &ip, IntegrationPoint &coarse_ip)
{
Mesh &fine_mesh = *T.mesh;
// Get the element transformation of the coarse element containing the
// fine element.
int fine_element = T.ElementNo;
const CoarseFineTransformations &cf = fine_mesh.GetRefinementTransforms();
int coarse_element = cf.embeddings[fine_element].parent;
ElementTransformation *coarse_T = coarse_mesh.GetElementTransformation(
coarse_element);
// Transform the integration point from fine element coordinates to coarse
// element coordinates.
Geometry::Type geom = T.GetGeometryType();
IntegrationPointTransformation fine_to_coarse;
IsoparametricTransformation &emb_tr = fine_to_coarse.Transf;
emb_tr.SetIdentityTransformation(geom);
emb_tr.SetPointMat(cf.point_matrices[geom](cf.embeddings[fine_element].matrix));
fine_to_coarse.Transform(ip, coarse_ip);
coarse_T->SetIntPoint(&coarse_ip);
return coarse_T;
}
double PWConstCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
@@ -28,6 +55,52 @@ double PWConstCoefficient::Eval(ElementTransformation & T,
return (constants(att-1));
}
void PWCoefficient::InitMap(const Array<int> & attr,
const Array<Coefficient*> & coefs)
{
MFEM_VERIFY(attr.Size() == coefs.Size(),
"PWCoefficient: "
"Attribute and coefficient arrays have incompatible "
"dimensions.");
for (int i=0; i<attr.Size(); i++)
{
if (coefs[i] != NULL)
{
UpdateCoefficient(attr[i], *coefs[i]);
}
}
}
void PWCoefficient::SetTime(double t)
{
Coefficient::SetTime(t);
std::map<int, Coefficient*>::iterator p = pieces.begin();
for (; p != pieces.end(); p++)
{
if (p->second != NULL)
{
p->second->SetTime(t);
}
}
}
double PWCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
const int att = T.Attribute;
std::map<int, Coefficient*>::const_iterator p = pieces.find(att);
if (p != pieces.end())
{
if ( p->second != NULL)
{
return p->second->Eval(T, ip);
}
}
return 0.0;
}
double FunctionCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
@@ -49,7 +122,17 @@ double FunctionCoefficient::Eval(ElementTransformation & T,
double GridFunctionCoefficient::Eval (ElementTransformation &T,
const IntegrationPoint &ip)
{
return GridF -> GetValue (T, ip, Component);
Mesh *gf_mesh = GridF->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
return GridF->GetValue(T, ip, Component);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
return GridF->GetValue(*coarse_T, coarse_ip, Component);
}
}
void TransformedCoefficient::SetTime(double t)
@@ -120,6 +203,63 @@ void VectorCoefficient::Eval(DenseMatrix &M, ElementTransformation &T,
}
}
void PWVectorCoefficient::InitMap(const Array<int> & attr,
const Array<VectorCoefficient*> & coefs)
{
MFEM_VERIFY(attr.Size() == coefs.Size(),
"PWVectorCoefficient: "
"Attribute and coefficient arrays have incompatible "
"dimensions.");
for (int i=0; i<attr.Size(); i++)
{
if (coefs[i] != NULL)
{
UpdateCoefficient(attr[i], *coefs[i]);
}
}
}
void PWVectorCoefficient::UpdateCoefficient(int attr, VectorCoefficient & coef)
{
MFEM_VERIFY(coef.GetVDim() == vdim,
"PWVectorCoefficient::UpdateCoefficient: "
"VectorCoefficient has incompatible dimension.");
pieces[attr] = &coef;
}
void PWVectorCoefficient::SetTime(double t)
{
VectorCoefficient::SetTime(t);
std::map<int, VectorCoefficient*>::iterator p = pieces.begin();
for (; p != pieces.end(); p++)
{
if (p->second != NULL)
{
p->second->SetTime(t);
}
}
}
void PWVectorCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
const int att = T.Attribute;
std::map<int, VectorCoefficient*>::const_iterator p = pieces.find(att);
if (p != pieces.end())
{
if ( p->second != NULL)
{
p->second->Eval(V, T, ip);
return;
}
}
V.SetSize(vdim);
V = 0.0;
}
void VectorFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
@@ -202,13 +342,30 @@ void VectorGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
void VectorGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
GridFunc->GetVectorValue(T, ip, V);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
GridFunc->GetVectorValue(T, ip, V);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
GridFunc->GetVectorValue(*coarse_T, coarse_ip, V);
}
}
void VectorGridFunctionCoefficient::Eval(
DenseMatrix &M, ElementTransformation &T, const IntegrationRule &ir)
{
GridFunc->GetVectorValues(T, ir, M);
if (T.mesh == GridFunc->FESpace()->GetMesh())
{
GridFunc->GetVectorValues(T, ir, M);
}
else
{
VectorCoefficient::Eval(M, T, ir);
}
}
GradientGridFunctionCoefficient::GradientGridFunctionCoefficient (
@@ -228,13 +385,30 @@ void GradientGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
void GradientGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
GridFunc->GetGradient(T, V);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
GridFunc->GetGradient(T, V);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
GridFunc->GetGradient(*coarse_T, V);
}
}
void GradientGridFunctionCoefficient::Eval(
DenseMatrix &M, ElementTransformation &T, const IntegrationRule &ir)
{
GridFunc->GetGradients(T, ir, M);
if (T.mesh == GridFunc->FESpace()->GetMesh())
{
GridFunc->GetGradients(T, ir, M);
}
else
{
VectorCoefficient::Eval(M, T, ir);
}
}
CurlGridFunctionCoefficient::CurlGridFunctionCoefficient(
@@ -260,7 +434,17 @@ void CurlGridFunctionCoefficient::SetGridFunction(const GridFunction *gf)
void CurlGridFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
GridFunc->GetCurl(T, V);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
GridFunc->GetCurl(T, V);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
GridFunc->GetCurl(*coarse_T, V);
}
}
DivergenceGridFunctionCoefficient::DivergenceGridFunctionCoefficient (
@@ -272,7 +456,17 @@ DivergenceGridFunctionCoefficient::DivergenceGridFunctionCoefficient (
double DivergenceGridFunctionCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
return GridFunc->GetDivergence(T);
Mesh *gf_mesh = GridFunc->FESpace()->GetMesh();
if (T.mesh == gf_mesh)
{
return GridFunc->GetDivergence(T);
}
else
{
IntegrationPoint coarse_ip;
ElementTransformation *coarse_T = RefinedToCoarse(*gf_mesh, T, ip, coarse_ip);
return GridFunc->GetDivergence(*coarse_T);
}
}
void VectorDeltaCoefficient::SetTime(double t)
@@ -331,6 +525,72 @@ void VectorRestrictedCoefficient::Eval(
}
}
void PWMatrixCoefficient::InitMap(const Array<int> & attr,
const Array<MatrixCoefficient*> & coefs)
{
MFEM_VERIFY(attr.Size() == coefs.Size(),
"PWMatrixCoefficient: "
"Attribute and coefficient arrays have incompatible "
"dimensions.");
for (int i=0; i<attr.Size(); i++)
{
if (coefs[i] != NULL)
{
UpdateCoefficient(attr[i], *coefs[i]);
}
}
}
void PWMatrixCoefficient::UpdateCoefficient(int attr, MatrixCoefficient & coef)
{
MFEM_VERIFY(coef.GetHeight() == height,
"PWMatrixCoefficient::UpdateCoefficient: "
"MatrixCoefficient has incompatible height.");
MFEM_VERIFY(coef.GetWidth() == width,
"PWMatrixCoefficient::UpdateCoefficient: "
"MatrixCoefficient has incompatible width.");
if (symmetric)
{
MFEM_VERIFY(coef.IsSymmetric(),
"PWMatrixCoefficient::UpdateCoefficient: "
"MatrixCoefficient has incompatible symmetry.");
}
pieces[attr] = &coef;
}
void PWMatrixCoefficient::SetTime(double t)
{
MatrixCoefficient::SetTime(t);
std::map<int, MatrixCoefficient*>::iterator p = pieces.begin();
for (; p != pieces.end(); p++)
{
if (p->second != NULL)
{
p->second->SetTime(t);
}
}
}
void PWMatrixCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip)
{
const int att = T.Attribute;
std::map<int, MatrixCoefficient*>::const_iterator p = pieces.find(att);
if (p != pieces.end())
{
if ( p->second != NULL)
{
p->second->Eval(K, T, ip);
return;
}
}
K.SetSize(height, width);
K = 0.0;
}
void MatrixFunctionCoefficient::SetTime(double t)
{
if (Q) { Q->SetTime(t); }
+270
View File
@@ -125,6 +125,87 @@ public:
const IntegrationPoint &ip);
};
/** @brief A piecewise coefficient with the pieces keyed off the element
attribute numbers.
A value of zero will be returned for any missing attribute numbers.
This object will not assume ownership of any Coefficient objects
passed to it. Consequently, the caller must ensure that the
individual Coefficient objects are not deleted while this
PWCoefficient is still in use.
\note The keys may either be domain attribute numbers or boundary
attribute numbers. If the PWCoefficient is used with a domain
integrator the keys are assumed to be domain attribute
numbers. Similarly, if the PWCoefficient is used with a boundary
integrator the keys are assumed to be boundary attribute numbers.
*/
class PWCoefficient : public Coefficient
{
private:
/** Internal data structure to store pointers to the appropriate
coefficients for different regions of the mesh. The keys used
in the map are the mesh attribute numbers (either element
attribute or boundary element attribute depending upon
context). The values returned for any missing attributes will
be zero. The coefficient pointers may be NULL in which case a
value of zero is returned.
The Coefficient objects contained in this map are NOT owned by
this PWCoefficient object. This means that they will not be
deleted when this object is deleted also the caller must ensure
that the various Coefficient objects are not deleted while this
PWCoefficient is still needed.
*/
std::map<int, Coefficient*> pieces;
/** Convenience function to check for compatible array lengths,
loop over the arrays, and add their attribute/Coefficient pairs
to the internal data structure.
*/
void InitMap(const Array<int> & attr,
const Array<Coefficient*> & coefs);
public:
/// Constructs a piecewise coefficient
explicit PWCoefficient() {}
/// Construct the coefficient using arrays describing the pieces
/** \param attr - an array of attribute numbers for each piece
\param coefs - the corresponding array of Coefficient pointers
Any missing attributes or NULL coefficient pointers will result in a
value of zero being returned for that attribute.
\note Ownership of the Coefficient objects will NOT be
transferred to this object.
*/
PWCoefficient(const Array<int> & attr,
const Array<Coefficient*> & coefs)
{ InitMap(attr, coefs); }
/// Set the time for time dependent coefficients
virtual void SetTime(double t);
/// Replace a set of coefficients
void UpdateCoefficients(const Array<int> & attr,
const Array<Coefficient*> & coefs)
{ InitMap(attr, coefs); }
/// Replace a single Coefficient for a particular attribute
void UpdateCoefficient(int attr, Coefficient & coef)
{ pieces[attr] = &coef; }
/// Remove a single Coefficient for a particular attribute
void ZeroCoefficient(int attr)
{ pieces.erase(attr); }
/// Evaluate the coefficient.
virtual double Eval(ElementTransformation &T,
const IntegrationPoint &ip);
};
/// A general function coefficient
class FunctionCoefficient : public Coefficient
{
@@ -413,6 +494,89 @@ public:
const Vector& GetVec() { return vec; }
};
/** @brief A piecewise vector-valued coefficient with the pieces keyed off the
element attribute numbers.
A value of zero will be returned for any missing attribute numbers.
This object will not assume ownership of any VectorCoefficient
objects passed to it. Consequently, the caller must ensure that
the individual VectorCoefficient objects are not deleted while
this PWVectorCoefficient is still in use.
\note The keys may either be domain attribute numbers or boundary
attribute numbers. If the PWVectorCoefficient is used with a
domain integrator the keys are assumed to be domain attribute
numbers. Similarly, if the PWVectorCoefficient is used with a
boundary integrator the keys are assumed to be boundary attribute
numbers.
*/
class PWVectorCoefficient : public VectorCoefficient
{
private:
/** Internal data structure to store pointers to the appropriate
coefficients for different regions of the mesh. The keys used
in the map are the mesh attribute numbers (either element
attribute or boundary element attribute depending upon
context). The values returned for any missing attributes will
be zero. The coefficient pointers may be NULL in which case a
value of zero is returned.
The VectorCoefficient objects contained in this map are NOT
owned by this PWVectorCoefficient object. This means that they
will not be deleted when this object is deleted also the caller
must ensure that the various VectorCoefficient objects are not
deleted while this PWVectorCoefficient is still needed.
*/
std::map<int, VectorCoefficient*> pieces;
/** Convenience function to check for compatible array lengths,
loop over the arrays, and add their attribute/VectorCoefficient
pairs to the internal data structure.
*/
void InitMap(const Array<int> & attr,
const Array<VectorCoefficient*> & coefs);
public:
/// Constructs a piecewise vector coefficient of dimension vd
explicit PWVectorCoefficient(int vd): VectorCoefficient(vd) {}
/// Construct the coefficient using arrays describing the pieces
/** \param vd - dimension of the vector-valued result
\param attr - an array of attribute numbers for each piece
\param coefs - the corresponding array of VectorCoefficient pointers
Any missing attributes or NULL coefficient pointers will result in a
zero vector being returned for that attribute.
\note Ownership of the VectorCoefficient objects will NOT be
transferred to this object.
*/
PWVectorCoefficient(int vd, const Array<int> & attr,
const Array<VectorCoefficient*> & coefs)
: VectorCoefficient(vd) { InitMap(attr, coefs); }
/// Set the time for time dependent coefficients
virtual void SetTime(double t);
/// Replace a set of coefficients
void UpdateCoefficients(const Array<int> & attr,
const Array<VectorCoefficient*> & coefs)
{ InitMap(attr, coefs); }
/// Replace a single Coefficient for a particular attribute
void UpdateCoefficient(int attr, VectorCoefficient & coef);
/// Remove a single VectorCoefficient for a particular attribute
void ZeroCoefficient(int attr)
{ pieces.erase(attr); }
/// Evaluate the coefficient.
virtual void Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip);
using VectorCoefficient::Eval;
};
/// A general vector function coefficient
class VectorFunctionCoefficient : public VectorCoefficient
{
@@ -782,6 +946,112 @@ public:
};
/** @brief A piecewise matrix-valued coefficient with the pieces keyed off the
element attribute numbers.
A value of zero will be returned for any missing attribute numbers.
This object will not assume ownership of any MatrixCoefficient
objects passed to it. Consequently, the caller must ensure that
the individual MatrixCoefficient objects are not deleted while
this PWMatrixCoefficient is still in use.
\note The keys may either be domain attribute numbers or boundary
attribute numbers. If the PWMatrixCoefficient is used with a
domain integrator the keys are assumed to be domain attribute
numbers. Similarly, if the PWMatrixCoefficient is used with a
boundary integrator the keys are assumed to be boundary attribute
numbers.
*/
class PWMatrixCoefficient : public MatrixCoefficient
{
private:
/** Internal data structure to store pointers to the appropriate
coefficients for different regions of the mesh. The keys used
in the map are the mesh attribute numbers (either element
attribute or boundary element attribute depending upon
context). The values returned for any missing attributes will
be zero. The coefficient pointers may be NULL in which case a
value of zero is returned.
The MatrixCoefficient objects contained in this map are NOT
owned by this PWMatrixCoefficient object. This means that they
will not be deleted when this object is deleted also the caller
must ensure that the various MatrixCoefficient objects are not
deleted while this PWMatrixCoefficient is still needed.
*/
std::map<int, MatrixCoefficient*> pieces;
/** Convenience function to check for compatible array lengths,
loop over the arrays, and add their attribute/MatrixCoefficient
pairs to the internal data structure.
*/
void InitMap(const Array<int> & attr,
const Array<MatrixCoefficient*> & coefs);
public:
/// Constructs a piecewise matrix coefficient of dimension dim by dim
explicit PWMatrixCoefficient(int dim, bool symm = false)
: MatrixCoefficient(dim, symm) {}
/// Constructs a piecewise matrix coefficient of dimension h by w
explicit PWMatrixCoefficient(int h, int w, bool symm = false)
: MatrixCoefficient(h, w, symm) {}
/// Construct the coefficient using arrays describing the pieces
/** \param dim - size of the square matrix-valued result
\param attr - an array of attribute numbers for each piece
\param coefs - the corresponding array of MatrixCoefficient pointers
\param symm - true if the result will be symmetric, false otherwise
Any missing attributes or NULL coefficient pointers will result in a
zero matrix being returned.
\note Ownership of the MatrixCoefficient objects will NOT be
transferred to this object.
*/
PWMatrixCoefficient(int dim, const Array<int> & attr,
const Array<MatrixCoefficient*> & coefs,
bool symm=false)
: MatrixCoefficient(dim, symm) { InitMap(attr, coefs); }
/// Construct the coefficient using arrays describing the pieces
/** \param h - height of the matrix-valued result
\param w - width of the matrix-valued result
\param attr - an array of attribute numbers for each piece
\param coefs - the corresponding array of MatrixCoefficient pointers
\param symm - true if the result will be symmetric, false otherwise
Any missing attributes or NULL coefficient pointers will result in a
zero matrix being returned for that attribute.
\note Ownership of the MatrixCoefficient objects will NOT be
transferred to this object.
*/
PWMatrixCoefficient(int h, int w, const Array<int> & attr,
const Array<MatrixCoefficient*> & coefs,
bool symm=false)
: MatrixCoefficient(h, w, symm) { InitMap(attr, coefs); }
/// Set the time for time dependent coefficients
virtual void SetTime(double t);
/// Replace a set of coefficients
void UpdateCoefficients(const Array<int> & attr,
const Array<MatrixCoefficient*> & coefs)
{ InitMap(attr, coefs); }
/// Replace a single coefficient for a particular attribute
void UpdateCoefficient(int attr, MatrixCoefficient & coef);
/// Remove a single MatrixCoefficient for a particular attribute
void ZeroCoefficient(int attr)
{ pieces.erase(attr); }
/// Evaluate the coefficient.
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip);
};
/** @brief A matrix coefficient with an optional scalar coefficient multiplier
\a q. The matrix function can either be represented by a std function or
a constant matrix provided when constructing this object. */
+34
View File
@@ -195,6 +195,15 @@ ComplexLinearForm::AddDomainIntegrator(LinearFormIntegrator *lfi_real,
if ( lfi_imag ) { lfi->AddDomainIntegrator(lfi_imag); }
}
void
ComplexLinearForm::AddDomainIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag,
Array<int> &elem_attr_marker)
{
if ( lfi_real ) { lfr->AddDomainIntegrator(lfi_real, elem_attr_marker); }
if ( lfi_imag ) { lfi->AddDomainIntegrator(lfi_imag, elem_attr_marker); }
}
void
ComplexLinearForm::AddBoundaryIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag)
@@ -317,6 +326,14 @@ void SesquilinearForm::AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
if (bfi_imag) { blfi->AddDomainIntegrator(bfi_imag); }
}
void SesquilinearForm::AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag,
Array<int> & elem_marker)
{
if (bfi_real) { blfr->AddDomainIntegrator(bfi_real, elem_marker); }
if (bfi_imag) { blfi->AddDomainIntegrator(bfi_imag, elem_marker); }
}
void
SesquilinearForm::AddBoundaryIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag)
@@ -879,6 +896,15 @@ ParComplexLinearForm::AddDomainIntegrator(LinearFormIntegrator *lfi_real,
if ( lfi_imag ) { plfi->AddDomainIntegrator(lfi_imag); }
}
void
ParComplexLinearForm::AddDomainIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag,
Array<int> &elem_attr_marker)
{
if ( lfi_real ) { plfr->AddDomainIntegrator(lfi_real, elem_attr_marker); }
if ( lfi_imag ) { plfi->AddDomainIntegrator(lfi_imag, elem_attr_marker); }
}
void
ParComplexLinearForm::AddBoundaryIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag)
@@ -1040,6 +1066,14 @@ void ParSesquilinearForm::AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
if (bfi_imag) { pblfi->AddDomainIntegrator(bfi_imag); }
}
void ParSesquilinearForm::AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag,
Array<int> & elem_marker)
{
if (bfi_real) { pblfr->AddDomainIntegrator(bfi_real, elem_marker); }
if (bfi_imag) { pblfi->AddDomainIntegrator(bfi_imag, elem_marker); }
}
void
ParSesquilinearForm::AddBoundaryIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag)
+20
View File
@@ -128,6 +128,11 @@ public:
void AddDomainIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag);
/// Adds new Domain Integrator, restricted to the given attributes.
void AddDomainIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag,
Array<int> &elem_attr_marker);
/// Adds new Boundary Integrator.
void AddBoundaryIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag);
@@ -260,6 +265,11 @@ public:
void AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag);
/// Adds new Domain Integrator, restricted to the given attributes.
void AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag,
Array<int> &elem_marker);
/// Adds new Boundary Integrator.
void AddBoundaryIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag);
@@ -464,6 +474,11 @@ public:
void AddDomainIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag);
/// Adds new Domain Integrator, restricted to specific attributes.
void AddDomainIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag,
Array<int> &elem_attr_marker);
/// Adds new Boundary Integrator.
void AddBoundaryIntegrator(LinearFormIntegrator *lfi_real,
LinearFormIntegrator *lfi_imag);
@@ -598,6 +613,11 @@ public:
void AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag);
/// Adds new Domain Integrator, restricted to specific attributes.
void AddDomainIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag,
Array<int> &elem_marker);
/// Adds new Boundary Integrator.
void AddBoundaryIntegrator(BilinearFormIntegrator *bfi_real,
BilinearFormIntegrator *bfi_imag);
+80 -2
View File
@@ -330,7 +330,7 @@ ConduitDataCollection::BlueprintMeshToMesh(const Node &n_mesh,
}
else
{
Node &(n_bndry_conn_conv) =
Node &n_bndry_conn_conv =
n_conv["topologies"][bndry_topo_name]["elements/connectivity"];
n_bndry_conn.to_int_array(n_bndry_conn_conv);
bndry_indices = (n_bndry_conn_conv).value();
@@ -645,7 +645,8 @@ ConduitDataCollection::MeshToBlueprintMesh(Mesh *mesh,
Node &n_mesh,
const std::string &coordset_name,
const std::string &main_topology_name,
const std::string &boundary_topology_name)
const std::string &boundary_topology_name,
const std::string &main_adjset_name)
{
int dim = mesh->SpaceDimension();
@@ -815,6 +816,83 @@ ConduitDataCollection::MeshToBlueprintMesh(Mesh *mesh,
bndry_att_vals[i] = mesh->GetBdrAttribute(i);
}
}
////////////////////////////////////////////
// Setup adjsets
////////////////////////////////////////////
#ifdef MFEM_USE_MPI
ParMesh *pmesh = dynamic_cast<ParMesh*>(mesh);
if (pmesh)
{
////////////////////////////////////////////
// Setup main adjset
////////////////////////////////////////////
Node &n_adjset = n_mesh["adjsets"][main_adjset_name];
n_adjset["association"] = "vertex";
n_adjset["topology"] = main_topology_name;
n_adjset["groups"].set(DataType::object());
const GroupTopology &pmesh_gtopo = pmesh->gtopo;
const int local_rank = pmesh->GetMyRank();
const int num_groups = pmesh_gtopo.NGroups();
// NOTE: skip the first group since its the local-only group
for (int i = 1; i < num_groups; i++)
{
const int num_group_nbrs = pmesh_gtopo.GetGroupSize(i);
const int *group_nbrs = pmesh_gtopo.GetGroup(i);
const int num_group_verts = pmesh->GroupNVertices(i);
// NOTE: 'neighbor' values are local to this processor, but Blueprint
// expects global domain identifiers, so we collapse this layer of
// indirection
Array<int> group_ranks(num_group_nbrs);
std::string group_name = "group";
{
for (int j = 0; j < num_group_nbrs; j++)
{
group_ranks[j] = pmesh_gtopo.GetNeighborRank(group_nbrs[j]);
}
group_ranks.Sort();
for (int j = 0; j < num_group_nbrs; j++)
{
group_name += "_" + std::to_string(group_ranks[j]);
}
// NOTE: Blueprint only wants remote ranks in its neighbor list,
// so we remove the local rank after the canonicalized Blueprint
// group name is formed
group_ranks.DeleteFirst(local_rank);
}
Node &n_group = n_adjset["groups"][group_name];
n_group["neighbors"].set(group_ranks.GetData(), group_ranks.Size());
n_group["values"].set(DataType::c_int(num_group_verts));
int_array group_vals = n_group["values"].value();
for (int j = 0; j < num_group_verts; j++)
{
group_vals[j] = pmesh->GroupVertex(i, j);
}
}
// NOTE: We don't create an adjset for face neighbor data because
// these faces aren't listed in the 'boundary_topology_name' topology
// (this topology only covers the faces between 'main_topology_name'
// elements and void). To include a face neighbor data adjset, this
// function would need to export a topology with either (1) all faces
// in the mesh topology or (2) all boundary faces, including neighbors.
////////////////////////////////////////////
// Setup distributed state
////////////////////////////////////////////
Node &n_domid = n_mesh["state/domain_id"];
n_domid.set(local_rank);
}
#endif
}
//---------------------------------------------------------------------------//
+2 -1
View File
@@ -166,7 +166,8 @@ public:
conduit::Node &out,
const std::string &coordset_name = "coords",
const std::string &main_topology_name = "main",
const std::string &boundary_topology_name = "boundary");
const std::string &boundary_topology_name = "boundary",
const std::string &main_adjset_name = "main_adjset");
/// Describes a MFEM grid function using the mesh blueprint
/** Sets up passed conduit::Node out to describe the given grid function
+74
View File
@@ -85,6 +85,11 @@ void TransformPrimal(const DofTransformation *ran_dof_trans,
}
}
void DofTransformation::InvTransformDual(Vector &v) const
{
InvTransformDual(v.GetData());
}
void TransformDual(const DofTransformation *ran_dof_trans,
const DofTransformation *dom_dof_trans,
DenseMatrix &elmat)
@@ -195,6 +200,35 @@ void VDofTransformation::TransformDual(double *v) const
}
}
void VDofTransformation::InvTransformDual(double *v) const
{
int size = doftrans_->Size();
if ((Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
doftrans_->InvTransformDual(&v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
doftrans_->InvTransformDual(vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
const double ND_DofTransformation::T_data[24] =
{
1.0, 0.0, 0.0, 1.0,
@@ -291,6 +325,26 @@ ND_TriDofTransformation::TransformDual(double *v) const
}
}
void
ND_TriDofTransformation::InvTransformDual(double *v) const
{
int nedofs = order; // number of DoFs per edge
int nfdofs = order*(order-1); // number of DoFs per face
double data[2];
Vector v2(data, 2);
// Transform face DoFs
for (int f=0; f<1; f++)
{
for (int i=0; i<nfdofs/2; i++)
{
v2 = &v[3*nedofs + f*nfdofs + 2*i];
T(Fo[f]).MultTranspose(v2, &v[3*nedofs + f*nfdofs + 2*i]);
}
}
}
ND_TetDofTransformation::ND_TetDofTransformation(int p)
: ND_DofTransformation(p*(p + 2)*(p + 3)/2, p)
{
@@ -355,4 +409,24 @@ ND_TetDofTransformation::TransformDual(double *v) const
}
}
void
ND_TetDofTransformation::InvTransformDual(double *v) const
{
int nedofs = order; // number of DoFs per edge
int nfdofs = order*(order-1); // number of DoFs per face
double data[2];
Vector v2(data, 2);
// Transform face DoFs
for (int f=0; f<4; f++)
{
for (int i=0; i<nfdofs/2; i++)
{
v2 = &v[6*nedofs + f*nfdofs + 2*i];
T(Fo[f]).MultTranspose(v2, &v[6*nedofs + f*nfdofs + 2*i]);
}
}
}
} // namespace mfem
+16
View File
@@ -102,6 +102,10 @@ public:
virtual void TransformDual(double *v) const = 0;
virtual void TransformDual(Vector &v) const;
/** Inverse Transform dual DoFs */
virtual void InvTransformDual(double *v) const = 0;
virtual void InvTransformDual(Vector &v) const;
/** Transform a matrix of dual DoFs entries as computed by a
BilinearFormIntegrator before summing into a BilinearForm object. */
virtual void TransformDual(DenseMatrix &V) const;
@@ -183,10 +187,12 @@ public:
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
void TransformPrimal(double *v) const;
void InvTransformPrimal(double *v) const;
void TransformDual(double *v) const;
void InvTransformDual(double *v) const;
};
/** Abstract base class for high-order Nedelec spaces on elements with
@@ -235,6 +241,9 @@ public:
void InvTransformPrimal(double *v) const;
void TransformDual(double *v) const;
void InvTransformDual(double *v) const;
using DofTransformation::InvTransformDual;
};
/// DoF transformation implementation for the Nedelec basis on tetrahedra
@@ -246,12 +255,15 @@ public:
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
void TransformPrimal(double *v) const;
void InvTransformPrimal(double *v) const;
void TransformDual(double *v) const;
void InvTransformDual(double *v) const;
};
/// DoF transformation implementation for the Nedelec basis on wedge elements
@@ -264,12 +276,16 @@ public:
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
void TransformPrimal(double *v) const;
void InvTransformPrimal(double *v) const;
void TransformDual(double *v) const;
void InvTransformDual(double *v) const;
};
} // namespace mfem
+2 -1
View File
@@ -21,7 +21,8 @@ ElementTransformation::ElementTransformation()
EvalState(0),
geom(Geometry::INVALID),
Attribute(-1),
ElementNo(-1)
ElementNo(-1),
mesh(nullptr)
{ }
double ElementTransformation::EvalWeight()
+6
View File
@@ -75,6 +75,12 @@ public:
int Attribute, ElementNo, ElementType;
/// The Mesh object containing the element.
/** If the element transformation belongs to a mesh, this will point to the
containing Mesh object. ElementNo will be the number of the element in
this Mesh. This will be NULL if the element does not belong to a mesh. */
class Mesh *mesh;
ElementTransformation();
/** @brief Force the reevaluation of the Jacobian in the next call. */
+6 -5
View File
@@ -749,11 +749,12 @@ public:
DenseMatrix &div) const;
/** @brief Get an Array<int> that maps lexicographically ordered indices to
the indices of the respective nodes/dofs/basis functions. Lexicographic
ordering of nodes is defined in terms of reference-space coordinates
(x,y,z). Lexicographically ordered nodes are listed first in order of
increasing x-coordinate, and then in order of increasing y-coordinate,
and finally in order of increasing z-coordinate.
the indices of the respective nodes/dofs/basis functions.
Lexicographic ordering of nodes is defined in terms of reference-space
coordinates (x,y,z). Lexicographically ordered nodes are listed first in
order of increasing x-coordinate, and then in order of increasing
y-coordinate, and finally in order of increasing z-coordinate.
For example, the six nodes of a quadratic triangle are lexicographically
ordered as follows:
+4 -5
View File
@@ -1709,8 +1709,7 @@ void FiniteElementSpace::RefinementOperator
fespace->DofsToVDofs(vd, c_vdofs, old_ndofs);
x.GetSubVector(f_vdofs, subX);
old_DoFTrans[geom]->InvTransformPrimal(subX);
doftrans->InvTransformDual(subX);
for (int p = 0; p < f_dofs.Size(); ++p)
{
if (processed[DecodeDof(f_dofs[p])])
@@ -1719,9 +1718,9 @@ void FiniteElementSpace::RefinementOperator
}
}
lP.MultTranspose(subX, subY);
doftrans->TransformPrimal(subY);
y.AddElementVector(c_vdofs, subY);
lP.MultTranspose(subX, subYt);
old_DoFTrans[geom]->TransformDual(subYt);
y.AddElementVector(c_vdofs, subYt);
}
if (vdoftrans)
+1 -2
View File
@@ -112,7 +112,7 @@ FmsFieldToGridFunction(FmsMesh fms_mesh, FmsField f, Mesh *mesh,
// NOTE: transplanted from the FmsMeshToMesh function
// We should do this work once and save it.
//--------------------------------------------------
FmsInt dim, n_vert, n_elem, space_dim;
FmsInt dim, n_elem, space_dim;
// Find the first component that has coordinates - that will be the new mfem
// mesh.
@@ -144,7 +144,6 @@ FmsFieldToGridFunction(FmsMesh fms_mesh, FmsField f, Mesh *mesh,
n_ents[et] += num_ents;
}
}
n_vert = n_ents[FMS_VERTEX];
//--------------------------------------------------
// Interrogate the field.
+441
View File
@@ -48,6 +48,26 @@ MFEM_HOST_DEVICE inline void LoadB(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Load B1d matrice into shared memory
MFEM_HOST_DEVICE inline void LoadB(const int D1D, const int Q1D,
const ConstDeviceMatrix &b,
const DeviceMatrix &B)
{
const int tidz = MFEM_THREAD_ID(z);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B(q,d) = b(q,d);
}
}
}
MFEM_SYNC_THREAD;
}
/// Load Bt1d matrices into shared memory
template<int MD1, int MQ1>
MFEM_HOST_DEVICE inline void LoadBt(const int D1D, const int Q1D,
@@ -120,6 +140,29 @@ MFEM_HOST_DEVICE inline void LoadBGt(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Load Bt1d & Gt1d matrices into shared memory w/o MAX
MFEM_HOST_DEVICE inline void LoadBGt(const int D1D, const int Q1D,
const ConstDeviceMatrix &b,
const ConstDeviceMatrix &g,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt)
{
const int tidz = MFEM_THREAD_ID(z);
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt(d,q) = b(q,d);
Gt(d,q) = g(q,d);
}
}
}
MFEM_SYNC_THREAD;
}
/// Load 2D input scalar into shared memory
template<int MD1, int NBZ>
MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
@@ -628,6 +671,141 @@ MFEM_HOST_DEVICE inline void GradXt(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Atomic 2D Transposed Evaluation, 1/2
MFEM_HOST_DEVICE inline void Atomic2DEvalYt(const int D1D, const int Q1D,
const DeviceMatrix &B,
const DeviceMatrix &QQ,
const DeviceMatrix &QD)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0;
for (int qx = 0; qx < Q1D; ++qx) { u += QQ(qy,qx) * B(qx,dx); }
QD(qy,dx) = u;
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 2D Transposed Evaluation, 2/2
MFEM_HOST_DEVICE inline void Atomic2DEvalXt(const int D1D, const int Q1D,
const DeviceMatrix &B,
const DeviceMatrix &Q,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0;
for (int qy = 0; qy < Q1D; ++qy) { u += Q(qy,dx) * B(qy,dy); }
const int gid = I(dx,dy,e);
const int idx = gid >= 0 ? gid : -1 - gid;
if (byVDIM) { AtomicAdd(Y(c,idx), u); }
else { AtomicAdd(Y(idx,c), u); }
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void Atomic2DEvalTranspose(const int D1D,
const int Q1D,
const DeviceMatrix &B,
const DeviceMatrix &QQ,
const DeviceMatrix &QD,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::Atomic2DEvalYt(D1D,Q1D,B,QQ,QD);
kernels::internal::Atomic2DEvalXt(D1D,Q1D,B,QD,I,Y,c,e,byVDIM);
}
/// Atomic 2D Transposed Gradient, 1/2
MFEM_HOST_DEVICE inline void AtomicGradYt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceMatrix &QQ0,
const DeviceMatrix &QQ1,
const DeviceMatrix &DQ0,
const DeviceMatrix &DQ1)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
u += Gt(dx,qx) * QQ0(qy,qx);
v += Bt(dx,qx) * QQ1(qy,qx);
}
DQ0(dx,qy) = u;
DQ1(dx,qy) = v;
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 2D Transposed Gradient, 2/2
MFEM_HOST_DEVICE inline void AtomicGradXt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceMatrix &DQ0,
const DeviceMatrix &DQ1,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
u += DQ0(dx,qy) * Bt(dy,qy);
v += DQ1(dx,qy) * Gt(dy,qy);
}
const double sum = u + v;
const int gid = I(dx,dy,e);
const int idx = gid >= 0 ? gid : -1-gid;
if (byVDIM) { AtomicAdd(Y(c,idx), sum); }
else { AtomicAdd(Y(idx,c), sum); }
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void Atomic2DGradTranspose(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceMatrix &QQ0,
const DeviceMatrix &QQ1,
const DeviceMatrix &DQ0,
const DeviceMatrix &DQ1,
const DeviceTensor<3,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::AtomicGradYt(D1D,Q1D,Bt,Gt,QQ0,QQ1,DQ0,DQ1);
kernels::internal::AtomicGradXt(D1D,Q1D,Bt,Gt,DQ0,DQ1,I,Y,c,e,byVDIM);
}
/// Load 3D scalar input vector into shared memory
MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
const DeviceTensor<4, const double> &x,
@@ -1543,6 +1721,269 @@ MFEM_HOST_DEVICE inline void GradXt(const int D1D, const int Q1D,
}
}
/// Atomic 3D Transposed Evaluation, 1/3
MFEM_HOST_DEVICE inline void Atomic3DEvalZt(const int D1D, const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
for (int dz = 0; dz < D1D; ++dz) { u[dz] = 0.0; }
for (int qz = 0; qz < Q1D; ++qz)
{
const double ZYX = Q(qz,qy,qx);
for (int dz = 0; dz < D1D; ++dz) { u[dz] += ZYX * B(qz,dz); }
}
for (int dz = 0; dz < D1D; ++dz) { Q(dz,qy,qx) = u[dz]; }
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Evaluation, 2/3
MFEM_HOST_DEVICE inline void Atomic3DEvalYt(const int D1D, const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q)
{
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
for (int dy = 0; dy < D1D; ++dy) { u[dy] = 0.0; }
for (int qy = 0; qy < Q1D; ++qy)
{
const double zYX = Q(dz,qy,qx);
for (int dy = 0; dy < D1D; ++dy) { u[dy] += zYX * B(qy,dy); }
}
for (int dy = 0; dy < D1D; ++dy) { Q(dz,dy,qx) = u[dy]; }
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Evaluation, 3/3
MFEM_HOST_DEVICE inline void Atomic3DEvalXt(const int D1D, const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dz,y,D1D)
{
MFEM_FOREACH_THREAD(dy,x,D1D)
{
for (int dx = 0; dx < D1D; ++dx) { u[dx] = 0.0; }
for (int qx = 0; qx < Q1D; ++qx)
{
const double zyX = Q(dz,dy,qx);
for (int dx = 0; dx < D1D; ++dx) { u[dx] += zyX * B(qx,dx); }
}
for (int dx = 0; dx < D1D; ++dx)
{
const double val = u[dx];
const int gid = I(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1 - gid;
if (byVDIM) { AtomicAdd(Y(c,idx), val); }
else { AtomicAdd(Y(idx,c), val); }
}
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void Atomic3DEvalTranspose(const int D1D,
const int Q1D,
double *u,
const DeviceMatrix &B,
const DeviceCube &Q,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::Atomic3DEvalZt(D1D,Q1D,u,B,Q);
kernels::internal::Atomic3DEvalYt(D1D,Q1D,u,B,Q);
kernels::internal::Atomic3DEvalXt(D1D,Q1D,u,B,Q,I,Y,c,e,byVDIM);
}
// Half of B and G are stored in shared to get B, Bt, G and Gt.
// Indices computation for SmemPADiffusionApply3D.
static MFEM_HOST_DEVICE inline int qi(const int q, const int d, const int Q)
{
return (q<=d) ? q : Q-1-q;
}
static MFEM_HOST_DEVICE inline int dj(const int q, const int d, const int D)
{
return (q<=d) ? d : D-1-d;
}
static MFEM_HOST_DEVICE inline int qk(const int q, const int d, const int Q)
{
return (q<=d) ? Q-1-q : q;
}
static MFEM_HOST_DEVICE inline int dl(const int q, const int d, const int D)
{
return (q<=d) ? D-1-d : d;
}
static MFEM_HOST_DEVICE inline double sign(const int q, const int d)
{
return (q<=d) ? -1.0 : 1.0;
}
/// Atomic 3D Transposed Gradient, 1/3
MFEM_HOST_DEVICE inline void AtomicGradZt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QQQ0,
const DeviceCube &QQQ1,
const DeviceCube &QQQ2,
const DeviceCube &QQD0,
const DeviceCube &QQD1,
const DeviceCube &QQD2)
{
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
const int i = qi(qx,dx,Q1D);
const int j = dj(qx,dx,D1D);
const int k = qk(qx,dx,Q1D);
const int l = dl(qx,dx,D1D);
const double s = sign(qx,dx);
u += QQQ0(qz,qy,qx) * Gt(l,k) * s;
v += QQQ1(qz,qy,qx) * Bt(j,i);
w += QQQ2(qz,qy,qx) * Bt(j,i);
}
QQD0(qz,qy,dx) = u;
QQD1(qz,qy,dx) = v;
QQD2(qz,qy,dx) = w;
}
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Gradient, 2/3
MFEM_HOST_DEVICE inline void AtomicGradYt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QQD0,
const DeviceCube &QQD1,
const DeviceCube &QQD2,
const DeviceCube &QDD0,
const DeviceCube &QDD1,
const DeviceCube &QDD2)
{
MFEM_FOREACH_THREAD(qz,z,Q1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
const int i = qi(qy,dy,Q1D);
const int j = dj(qy,dy,D1D);
const int k = qk(qy,dy,Q1D);
const int l = dl(qy,dy,D1D);
const double s = sign(qy,dy);
u += QQD0(qz,qy,dx) * Bt(j,i);
v += QQD1(qz,qy,dx) * Gt(l,k) * s;
w += QQD2(qz,qy,dx) * Bt(j,i);
}
QDD0(qz,dy,dx) = u;
QDD1(qz,dy,dx) = v;
QDD2(qz,dy,dx) = w;
}
}
}
MFEM_SYNC_THREAD;
}
/// Atomic 3D Transposed Gradient, 3/3
MFEM_HOST_DEVICE inline void AtomicGradXt(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QDD0,
const DeviceCube &QDD1,
const DeviceCube &QDD2,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
MFEM_FOREACH_THREAD(dz,z,D1D)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u = 0.0, v = 0.0, w = 0.0;
for (int qz = 0; qz < Q1D; ++qz)
{
const int i = qi(qz,dz,Q1D);
const int j = dj(qz,dz,D1D);
const int k = qk(qz,dz,Q1D);
const int l = dl(qz,dz,D1D);
const double s = sign(qz,dz);
u += QDD0(qz,dy,dx) * Bt(j,i);
v += QDD1(qz,dy,dx) * Bt(j,i);
w += QDD2(qz,dy,dx) * Gt(l,k) * s;
}
const double sum = u + v + w;
const int gid = I(dx,dy,dz,e);
const int idx = gid >= 0 ? gid : -1-gid;
if (byVDIM) { AtomicAdd(Y(c,idx), sum); }
else { AtomicAdd(Y(idx,c), sum); }
}
}
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline void Atomic3DGrad(const int D1D, const int Q1D,
const DeviceMatrix &Bt,
const DeviceMatrix &Gt,
const DeviceCube &QQ0,
const DeviceCube &QQ1,
const DeviceCube &QQ2,
const DeviceCube &QD0,
const DeviceCube &QD1,
const DeviceCube &QD2,
const DeviceCube &DD0,
const DeviceCube &DD1,
const DeviceCube &DD2,
const DeviceTensor<4,const int> &I,
const DeviceMatrix &Y,
const int c,
const int e,
const bool byVDIM)
{
kernels::internal::AtomicGradZt(D1D,Q1D,Bt,Gt,QQ0,QQ1,QQ2,QD0,QD1,QD2);
kernels::internal::AtomicGradYt(D1D,Q1D,Bt,Gt,QD0,QD1,QD2,DD0,DD1,DD2);
kernels::internal::AtomicGradXt(D1D,Q1D,Bt,Gt,DD0,DD1,DD2,I,Y,c,e,byVDIM);
}
} // namespace kernels::internal
} // namespace kernels
+48 -9
View File
@@ -23,6 +23,7 @@ LinearForm::LinearForm(FiniteElementSpace *f, LinearForm *lf)
UseDevice(true);
fes = f;
ext = nullptr;
extern_lfs = 1;
// Copy the pointers to the integrators
@@ -69,14 +70,14 @@ void LinearForm::AddDomainIntegrator(LinearFormIntegrator *lfi,
void LinearForm::AddBoundaryIntegrator (LinearFormIntegrator * lfi)
{
boundary_integs.Append (lfi);
boundary_integs.Append(lfi);
boundary_integs_marker.Append(NULL); // NULL -> all attributes are active
}
void LinearForm::AddBoundaryIntegrator (LinearFormIntegrator * lfi,
Array<int> &bdr_attr_marker)
{
boundary_integs.Append (lfi);
boundary_integs.Append(lfi);
boundary_integs_marker.Append(&bdr_attr_marker);
}
@@ -99,8 +100,35 @@ void LinearForm::AddInteriorFaceIntegrator(LinearFormIntegrator *lfi)
interior_face_integs.Append(lfi);
}
void LinearForm::SetAssemblyLevel(LinearAssemblyLevel assembly_level)
{
if (ext)
{
MFEM_ABORT("the assembly level has already been set!");
}
assembly = assembly_level;
switch (assembly)
{
case LinearAssemblyLevel::LEGACY:
break;
case LinearAssemblyLevel::FULL:
ext = new FullLinearFormExtension(this);
break;
default:
mfem_error("Unknown assembly level");
}
}
void LinearForm::Assemble()
{
Vector::operator=(0.0);
// The above operation is executed on device because of UseDevice().
// The first use of AddElementVector() below will move it back to host
// because both 'vdofs' and 'elemvect' are on host.
if (ext) { return ext->Assemble(); }
Array<int> vdofs;
ElementTransformation *eltrans;
DofTransformation *doftrans;
@@ -108,12 +136,6 @@ void LinearForm::Assemble()
int i;
Vector::operator=(0.0);
// The above operation is executed on device because of UseDevice().
// The first use of AddElementVector() below will move it back to host
// because both 'vdofs' and 'elemvect' are on host.
if (domain_integs.Size())
{
for (int k = 0; k < domain_integs.Size(); k++)
@@ -143,7 +165,7 @@ void LinearForm::Assemble()
{
doftrans->TransformDual(elemvect);
}
AddElementVector (vdofs, elemvect);
AddElementVector(vdofs, elemvect);
}
}
}
@@ -274,6 +296,18 @@ void LinearForm::Assemble()
}
}
void LinearForm::Update()
{
SetSize(fes->GetVSize()); ResetDeltaLocations();
if (ext) { ext->Update(); }
}
void LinearForm::Update(FiniteElementSpace *f)
{
fes = f;
Update();
}
void LinearForm::Update(FiniteElementSpace *f, Vector &v, int v_offset)
{
MFEM_ASSERT(v.Size() >= v_offset + f->GetVSize(), "");
@@ -281,6 +315,7 @@ void LinearForm::Update(FiniteElementSpace *f, Vector &v, int v_offset)
v.UseDevice(true);
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
ResetDeltaLocations();
if (ext) { ext->Update(); }
}
void LinearForm::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
@@ -292,6 +327,8 @@ void LinearForm::AssembleDelta()
{
if (domain_delta_integs.Size() == 0) { return; }
if (ext) { return ext->AssembleDelta(); }
if (!HaveDeltaLocations())
{
int sdim = fes->GetMesh()->SpaceDimension();
@@ -356,6 +393,8 @@ LinearForm::~LinearForm()
for (k=0; k < interior_face_integs.Size(); k++)
{ delete interior_face_integs[k]; }
}
delete ext;
}
}
+33 -6
View File
@@ -14,18 +14,39 @@
#include "../config/config.hpp"
#include "lininteg.hpp"
#include "linearform_ext.hpp"
#include "gridfunc.hpp"
namespace mfem
{
/** @brief Enumeration defining the assembly level for linear form classes
* derived from Vector. */
enum class LinearAssemblyLevel
{
/// Legacy assembled form, i.e. a global vector in MFEM format.
/// This assembly level is ALWAYS performed on the host.
LEGACY = 0,
/// Fully assembled form, i.e. a global vector in MFEM format.
/// This assembly is compatible with device execution.
FULL
};
/// Vector with associated FE space and LinearFormIntegrators.
class LinearForm : public Vector
{
friend LinearFormExtension;
protected:
/// FE space on which the LinearForm lives. Not owned.
FiniteElementSpace *fes;
/// The assembly level of the form (legacy or full)
LinearAssemblyLevel assembly;
/** @brief Extension for supporting different assembly levels. */
LinearFormExtension *ext;
/** @brief Indicates the LinearFormIntegrator%s stored in #domain_integs,
#domain_delta_integs, #boundary_integs, and #boundary_face_integs are
owned by another LinearForm. */
@@ -75,7 +96,7 @@ public:
/// Creates linear form associated with FE space @a *f.
/** The pointer @a f is not owned by the newly constructed object. */
LinearForm(FiniteElementSpace *f) : Vector(f->GetVSize())
{ fes = f; extern_lfs = 0; UseDevice(true); }
{ fes = f; ext = nullptr; extern_lfs = 0; UseDevice(true); }
/** @brief Create a LinearForm on the FiniteElementSpace @a f, using the
same integrators as the LinearForm @a lf.
@@ -90,7 +111,7 @@ public:
/** The associated FiniteElementSpace can be set later using one of the
methods: Update(FiniteElementSpace *) or
Update(FiniteElementSpace *, Vector &, int). */
LinearForm() { fes = NULL; extern_lfs = 0; UseDevice(true); }
LinearForm() { fes = NULL; ext = nullptr; extern_lfs = 0; UseDevice(true); }
/// Construct a LinearForm using previously allocated array @a data.
/** The LinearForm does not assume ownership of @a data which is assumed to
@@ -98,7 +119,7 @@ public:
for externally allocated array, the pointer @a data can be NULL. The data
array can be replaced later using the method SetData(). */
LinearForm(FiniteElementSpace *f, double *data) : Vector(data, f->GetVSize())
{ fes = f; extern_lfs = 0; }
{ fes = f; ext = nullptr; extern_lfs = 0; }
/// Copy assignment. Only the data of the base class Vector is copied.
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
@@ -155,6 +176,9 @@ public:
coefficients. */
Array<LinearFormIntegrator*> *GetDLFI() { return &domain_integs; }
/// Access the element attribute marker (of length mesh->attributes)
Array<Array<int>*> *GetDLFIM() { return &domain_integs_marker; }
/** @brief Access all integrators added with AddDomainIntegrator() which are
DeltaLFIntegrator%s with delta coefficients. */
Array<DeltaLFIntegrator*> *GetDLFI_Delta() { return &domain_delta_integs; }
@@ -173,6 +197,10 @@ public:
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetFLFI_Marker() { return &boundary_face_integs_marker; }
/// Set the desired assembly level, default is LinearAssemblyLevel::LEGACY.
/** This method must be called before assembly. */
void SetAssemblyLevel(LinearAssemblyLevel);
/// Assembles the linear form i.e. sums over all domain/bdr integrators.
void Assemble();
@@ -184,11 +212,10 @@ public:
updated, e.g. after its associated Mesh object has been refined.
@note This method does not perform assembly. */
void Update() { SetSize(fes->GetVSize()); ResetDeltaLocations(); }
void Update();
/// Associate a new FE space, @a *f, with this object and Update() it. */
void Update(FiniteElementSpace *f)
{ fes = f; SetSize(f->GetVSize()); ResetDeltaLocations(); }
void Update(FiniteElementSpace *f);
/** @brief Associate a new FE space, @a *f, with this object and use the data
of @a v, offset by @a v_offset, to initialize this object's Vector::data.
+104
View File
@@ -0,0 +1,104 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "linearform.hpp"
#include "../general/forall.hpp"
// Implementations of FullLinearFormExtension.
namespace mfem
{
FullLinearFormExtension::FullLinearFormExtension(LinearForm *lf):
LinearFormExtension(lf)
{
Update();
}
void FullLinearFormExtension::Assemble()
{
MFEM_VERIFY(lf->Size() == lf->FESpace()->GetVSize(), "");
// Filter out the unsupported integrators
MFEM_VERIFY(lf->GetBLFI()->Size() == 0,
"Integrators added with AddBoundaryIntegrator() "
"are not supported!");
MFEM_VERIFY(lf->GetDLFI_Delta()->Size() == 0, ""
"Integrators added with AddDomainIntegrator() which are "
"DeltaLFIntegrators with delta coefficients "
"are not supported!");
MFEM_VERIFY(lf->GetIFLFI()->Size() == 0,
"Integrators added with AddInteriorFaceIntegrator() "
"are not supported!");
MFEM_VERIFY(lf->GetFLFI()->Size() == 0,
"Integrators added with AddBdrFaceIntegrator() "
" are not supported!");
const FiniteElementSpace &fes = *lf->FESpace();
const Array<Array<int>*> &domain_integs_marker = *lf->GetDLFIM();
const int mesh_attributes_size = fes.GetMesh()->attributes.Size();
const Array<LinearFormIntegrator*> &domain_integs = *lf->GetDLFI();
for (int k = 0; k < domain_integs.Size(); ++k)
{
// Get the markers for this integrator
const Array<int> *domain_integs_marker_k = domain_integs_marker[k];
// check if there are markers for this integrator
const bool has_markers_k = domain_integs_marker_k != nullptr;
if (has_markers_k)
{
// Element attribute marker should be of length mesh->attributes
MFEM_VERIFY(mesh_attributes_size == domain_integs_marker_k->Size(),
"invalid element marker for domain linear form "
"integrator #" << k << ", counting from zero");
}
const int NE = fes.GetNE();
auto markers_w = markers.Write();
// if there are no markers, just use the whole linear form (1)
if (!has_markers_k)
{
// done this way as operator= for array are still done on the host
MFEM_FORALL(e, NE, markers_w[e] = 1;);
}
else
{
// otherwise, scan the attributes to set the markers to 0 or 1
const auto attr = attributes.Read();
const auto dimk = domain_integs_marker_k->Read();
MFEM_FORALL(e, NE, markers_w[e] = dimk[attr[e]-1] == 1;);
}
domain_integs[k]->AssembleFull(fes, markers, *lf);
}
}
void FullLinearFormExtension::Update()
{
MFEM_VERIFY(lf->Size() == lf->FESpace()->GetVSize(), "");
const int ne = lf->FESpace()->GetNE();
const Mesh &mesh = *lf->FESpace()->GetMesh();
markers.SetSize(ne);
// Gather the attributes on the host from all the elements
attributes.SetSize(ne);
for (int i = 0; i < ne; ++i) { attributes[i] = mesh.GetAttribute(i); }
}
} // namespace mfem
+71
View File
@@ -0,0 +1,71 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_LINEARFORM_EXT
#define MFEM_LINEARFORM_EXT
#include "../general/array.hpp"
namespace mfem
{
class LinearForm;
class FullLinearFormExtension;
/// Class extending the LinearForm class to support different AssemblyLevels.
class LinearFormExtension
{
protected:
/// Linear form from which this extension depends. Not owned.
LinearForm *lf;
public:
LinearFormExtension(LinearForm *lf): lf(lf) { }
virtual ~LinearFormExtension() { }
/// Updates the linear form extension
virtual void Update() = 0;
/// Assemble at the level given for the linear form extension
virtual void Assemble() = 0;
/// Assembles delta functions of the linear form extension
virtual void AssembleDelta() = 0;
};
/// Data and methods for fully-assembled linear forms
class FullLinearFormExtension : public LinearFormExtension
{
private:
/// Attributes of all mesh elements.
Array<int> attributes;
/// Temporary markers for device kernels.
Array<int> markers;
public:
FullLinearFormExtension(LinearForm *lf);
/// Fully assembles the linear form, compatible with device execution.
/// Only integrators added with AddDomainIntegrator are supported.
void Assemble() override;
/// Fully assembles the delta functions of the linear form.
/// Not yet supported.
void AssembleDelta() override { MFEM_ABORT("Not yet supported!"); }
void Update() override;
};
} // namespace mfem
#endif // MFEM_LINEARFORM_EXT
+58 -3
View File
@@ -9,13 +9,21 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include <cmath>
namespace mfem
{
void LinearFormIntegrator::AssembleFull(const FiniteElementSpace&,
const Array<int> &markers,
Vector &b)
{
MFEM_CONTRACT_VAR(b);
MFEM_CONTRACT_VAR(markers);
mfem_error("LinearFormIntegrator::AssembleFull(...)");
}
void LinearFormIntegrator::AssembleRHSElementVect(
const FiniteElement &el, FaceElementTransformations &Tr, Vector &elvect)
{
@@ -280,12 +288,11 @@ void VectorDomainLFIntegrator::AssembleRHSElementVect(
val = Tr.Weight();
el.CalcShape(ip, shape);
Q.Eval (Qvec, Tr, ip);
Q.Eval(Qvec, Tr, ip);
for (int k = 0; k < vdim; k++)
{
cf = val * Qvec(k);
for (int s = 0; s < dof; s++)
{
elvect(dof*k+s) += ip.weight * cf * shape(s);
@@ -311,6 +318,54 @@ void VectorDomainLFIntegrator::AssembleDeltaElementVect(
MultVWt(shape, Qvec, elvec_as_mat);
}
void VectorDomainLFGradIntegrator::AssembleRHSElementVect(
const FiniteElement &el, ElementTransformation &Tr, Vector &elvect)
{
const int dim = el.GetDim();
const int dof = el.GetDof();
const int vdim = Q.GetVDim();
const int sdim = Tr.GetSpaceDim();
dshape.SetSize(dof,sdim);
elvect.SetSize(dof*(vdim/sdim));
elvect = 0.0;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int intorder = 2 * el.GetOrder();
ir = &IntRules.Get(el.GetGeomType(), intorder);
}
Vector pelvect(dof);
Vector part_x(dim);
for (int q = 0; q < ir->GetNPoints(); q++)
{
const IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
el.CalcPhysDShape(Tr, dshape);
Q.Eval(Qvec, Tr, ip);
Qvec *= ip.weight * Tr.Weight();
for (int k = 0; k < vdim/sdim; k++)
{
for (int d=0; d < sdim; ++d) { part_x(d) = Qvec(k*sdim+d); }
dshape.Mult(part_x, pelvect);
for (int s = 0; s < dof; ++s) { elvect(s+k*dof) += pelvect(s); }
}
}
}
void VectorDomainLFGradIntegrator::AssembleDeltaElementVect(
const FiniteElement&, ElementTransformation&, Vector&)
{
MFEM_ABORT("Not implemented!");
}
void VectorBoundaryLFIntegrator::AssembleRHSElementVect(
const FiniteElement &el, ElementTransformation &Tr, Vector &elvect)
{
+48
View File
@@ -27,6 +27,11 @@ protected:
LinearFormIntegrator(const IntegrationRule *ir = NULL) { IntRule = ir; }
public:
/// Method defining full assembly
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -110,6 +115,10 @@ public:
DomainLFIntegrator(Coefficient &QF, const IntegrationRule *ir)
: DeltaLFIntegrator(QF, ir), Q(QF), oa(1), ob(1) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -136,6 +145,10 @@ public:
DomainLFGradIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -223,6 +236,10 @@ public:
VectorDomainLFIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -236,6 +253,37 @@ public:
using LinearFormIntegrator::AssembleRHSElementVect;
};
/** Class for domain integrator L(v) := (f, grad v), where
f=(f1x,f1y,f1z,...,fnx,fny,fnz) and v=(v1,...,vn). */
class VectorDomainLFGradIntegrator : public DeltaLFIntegrator
{
private:
Vector shape, Qvec;
VectorCoefficient &Q;
DenseMatrix dshape;
public:
/// Constructs the domain integrator (Q, grad v)
VectorDomainLFGradIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
virtual void AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b) override;
/** Given a particular Finite Element and a transformation (Tr)
computes the element right hand side element vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
ElementTransformation &Tr,
Vector &elvect) override;
virtual void AssembleDeltaElementVect(const FiniteElement &fe,
ElementTransformation &Trans,
Vector &elvect) override;
using LinearFormIntegrator::AssembleRHSElementVect;
};
/** Class for boundary integration of L(v) := (g, v), where
f=(f1,...,fn) and v=(v1,...,vn). */
class VectorBoundaryLFIntegrator : public LinearFormIntegrator
+104
View File
@@ -0,0 +1,104 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void DomainLFIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
const int vdim = fes.GetVDim();
MFEM_VERIFY(vdim == 1, "vdim should be equal to 1!");
GetOrder_f qorder_fct = [&](int el_order) { return oa * el_order + ob; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, qorder_fct);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
if (ConstantCoefficient *cQ =
dynamic_cast<ConstantCoefficient*>(&Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient *cQ =
dynamic_cast<QuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = cQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == vdim*NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
coeff.SetSize(NQ * NE);
auto C = Reshape(coeff.HostWrite(), NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
C(q,e) = Q.Eval(T, ir->IntPoint(q));
}
}
}
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
LinearFormExtensionKernel_f ker = nullptr;
if (dim==2) { ker=VectorDomainLFIntegratorAssemble2D; }
if (dim==3) { ker=VectorDomainLFIntegratorAssemble3D; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1, BENCH_FULL_DomainLF_3D_GLL
case 0x322: ker=VectorDomainLFIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFIntegratorAssemble3D<5,5>; break;
case 0x366: ker=VectorDomainLFIntegratorAssemble3D<6,6>; break;
// 3D kernels, q=p+2, BENCH_FULL_DomainLF_3D_GL
case 0x323: ker=VectorDomainLFIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFIntegratorAssemble3D<5,6>; break;
case 0x367: ker=VectorDomainLFIntegratorAssemble3D<6,7>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
+263
View File
@@ -0,0 +1,263 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
// Internal header, included only by .cpp files
#include "fem.hpp"
#include "../fem/kernels.hpp"
#include "../general/forall.hpp"
#include "../linalg/kernels.hpp"
namespace mfem
{
namespace internal
{
namespace linearform_extension
{
/// Signature of the kernels used for linear form extension
using LinearFormExtensionKernel_f = void (*)(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *g,
const int *idx,
const double *J,
const double *detJ,
const double *weights,
const Vector &coeff,
double *output);
/// Signature of the function used to compute the quadrature order
using GetOrder_f = std::function<int(int)>;
/// Internal helper function to get the integration rule
inline const IntegrationRule *GetIntRuleFromOrder(const FiniteElementSpace &fes,
const IntegrationRule *IntRule,
const GetOrder_f &qorder_fct)
{
const FiniteElement &fe = *fes.GetFE(0);
const int qorder = qorder_fct(fe.GetOrder());
const Geometry::Type geom_type = fe.GetGeomType();
return IntRule ? IntRule : &IntRules.Get(geom_type, qorder);
}
/// Internal helper function to encode the ID of a LinearFormExtension kernel
/// The ID is equal to: (dim << 8) |
/// (1D number of degrees of freedom << 4) |
/// (1D number of quadrature points)
inline int GetKernelId(const FiniteElementSpace &fes,
const IntegrationRule *ir)
{
Mesh *mesh = fes.GetMesh();
const int dim = mesh->Dimension();
const FiniteElement &el = *fes.GetFE(0);
const DofToQuad &maps = el.GetDofToQuad(*ir, DofToQuad::TENSOR);
const int d = maps.ndof;
const int q = maps.nqpt;
return (dim << 8) | (d << 4) | q;
}
/// Internal helper function to launch the LinearFormExtension kernel
inline void Launch(const LinearFormExtensionKernel_f &kernel,
const FiniteElementSpace &fes,
const IntegrationRule *ir,
const Vector &coeff,
const Array<int> &markers,
Vector &y)
{
Mesh *mesh = fes.GetMesh();
const int vdim = fes.GetVDim();
const bool byVDIM = fes.GetOrdering() == Ordering::byVDIM;
const FiniteElement &el = *fes.GetFE(0);
constexpr int flags = GeometricFactors::JACOBIANS |
GeometricFactors::DETERMINANTS;
const MemoryType mt = Device::GetDeviceMemoryType();
const GeometricFactors *geom = mesh->GetGeometricFactors(*ir, flags, mt);
const DofToQuad &maps = el.GetDofToQuad(*ir, DofToQuad::TENSOR);
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
const Operator *ERop = fes.GetElementRestriction(ordering);
const ElementRestriction* ER = dynamic_cast<const ElementRestriction*>(ERop);
MFEM_ASSERT(ER, "Not supported!");
const int *M = markers.Read();
const double *B = maps.B.Read();
const double *G = maps.G.Read();
const double *J = geom->J.Read();
const double *detJ = geom->detJ.Read();
const int *I = ER->GatherMap().Read();
const double *W = ir->GetWeights().Read();
double *Y = y.ReadWrite();
const int ND = fes.GetNDofs();
const int NE = fes.GetMesh()->GetNE();
const int d = maps.ndof;
const int q = maps.nqpt;
kernel(vdim, byVDIM, ND, NE, d, q, M, B, G, I, J, detJ, W, coeff, Y);
}
/// Internal assembly kernel for the 2D (Vector)DomainLFIntegrator
template<int D=0, int Q=0> static
void VectorDomainLFIntegratorAssemble2D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *, // g
const int *idx,
const double *, // jacobians
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto DetJ = Reshape(detJ, q,q, NE);
const auto W = Reshape(weights, q,q);
const auto I = Reshape(idx, d,d, NE);
const auto C = cst_coeff ? Reshape(F,vdim,1,1,1) : Reshape(F,vdim,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = 2*q*(d+q);
constexpr int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = 2*Q*(D+Q);
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), q,d);
const DeviceMatrix QQ(DeviceMemAlloc(sm,q*q), q,q);
const DeviceMatrix QD(DeviceMemAlloc(sm,q*d), q,d);
kernels::internal::LoadB(d,q,B,Bt);
for (int c = 0; c < vdim; ++c)
{
const double cst_val = C(c,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
const double detJ = DetJ(x,y,e);
const double coeff_val = cst_coeff ? cst_val : C(c,x,y,e);
QQ(y,x) = W(x,y) * coeff_val * detJ;
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic2DEvalTranspose(d,q,Bt,QQ,QD,I,Y,c,e,byVDIM);
}
});
}
/// Internal assembly kernel for the 2D (Vector)DomainLFIntegrator
template<int D=0, int Q=0> static
void VectorDomainLFIntegratorAssemble3D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *, // g
const int *idx,
const double *, // jacobians
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto DetJ = Reshape(detJ, q,q,q, NE);
const auto W = Reshape(weights, q,q,q);
const auto I = Reshape(idx, d,d,d, NE);
const auto C = cst_coeff ? Reshape(F,vdim,1,1,1,1):Reshape(F,vdim,q,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = q*d + q*q*q;
const int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_VERIFY(q < 32, "Unsupported quadrature order!");
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
double u[Q>0?Q:32];
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = Q*D + Q*Q*Q;
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceCube QQQ(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), q,d);
kernels::internal::LoadB(d,q,B,Bt);
for (int c = 0; c < vdim; ++c)
{
const double cst_val = C(c,0,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
for (int z = 0; z < q; ++z)
{
const double detJ = DetJ(x,y,z,e);
const double coeff_val = cst_coeff ? cst_val : C(c,x,y,z,e);
QQQ(z,y,x) = W(x,y,z) * coeff_val * detJ;
}
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic3DEvalTranspose(d,q,u,Bt,QQQ,I,Y,c,e,byVDIM);
}
});
}
} // namespace linearform_extension
} // namespace internal
} // namespace mfem
+107
View File
@@ -0,0 +1,107 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
#include "lininteg_domain_grad.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void DomainLFGradIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
MFEM_VERIFY(fes.GetVDim()==1, "vdim != 1");
GetOrder_f gof = [](const int el_order) { return 2.0 * el_order; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, gof);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
coeff = vcQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient *vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
const int qvdim = Q.GetVDim();
Vector Qvec(qvdim);
coeff.SetSize(qvdim * NQ * NE);
auto C = Reshape(coeff.HostWrite(), qvdim, NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
Q.Eval(Qvec, T, ir->IntPoint(q));
for (int c=0; c<qvdim; ++c)
{
C(c,q,e) = Qvec[c];
}
}
}
}
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
LinearFormExtensionKernel_f ker = nullptr;
if (dim==2) { ker=VectorDomainLFGradIntegratorAssemble2D; }
if (dim==3) { ker=VectorDomainLFGradIntegratorAssemble3D; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFGradIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFGradIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFGradIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFGradIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFGradIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFGradIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFGradIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFGradIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1
case 0x322: ker=VectorDomainLFGradIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFGradIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFGradIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFGradIntegratorAssemble3D<5,5>; break;
// 3D kernels, q=p+2
case 0x323: ker=VectorDomainLFGradIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFGradIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFGradIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFGradIntegratorAssemble3D<5,6>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
+239
View File
@@ -0,0 +1,239 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
// Internal header, included only by .cpp files
#include "fem.hpp"
#include "../general/forall.hpp"
#include "../fem/kernels.hpp"
#include "../linalg/kernels.hpp"
namespace mfem
{
namespace internal
{
namespace linearform_extension
{
////////////////////////////////////////////////////////////////////////////////
template<int D=0, int Q=0> static
void VectorDomainLFGradIntegratorAssemble2D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *g,
const int *idx,
const double *jacobians,
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr int DIM = 2;
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim*DIM;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto G = Reshape(g, q,d);
const auto J = Reshape(jacobians, q,q, DIM,DIM, NE);
const auto DetJ = Reshape(detJ, q,q, NE);
const auto W = Reshape(weights, q,q);
const auto I = Reshape(idx, d,d, NE);
const auto C = cst_coeff ?
Reshape(F,DIM,vdim,1,1,1):
Reshape(F,DIM,vdim,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = 2*d*q + 4*q*q;
const int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = 2*D*Q + 4*Q*Q;
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), d,q);
const DeviceMatrix Gt(DeviceMemAlloc(sm,q*d), d,q);
kernels::internal::LoadBGt(d,q,B,G,Bt,Gt);
const DeviceMatrix QQ0(DeviceMemAlloc(sm,q*q), q,q);
const DeviceMatrix QQ1(DeviceMemAlloc(sm,q*q), q,q);
const DeviceMatrix DQ0(DeviceMemAlloc(sm,d*q), d,q);
const DeviceMatrix DQ1(DeviceMemAlloc(sm,d*q), d,q);
for (int c = 0; c < vdim; ++c)
{
const double cst_val0 = C(0,c,0,0,0);
const double cst_val1 = C(1,c,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
double Jloc[4], Jinv[4];
Jloc[0] = J(x,y,0,0,e);
Jloc[1] = J(x,y,1,0,e);
Jloc[2] = J(x,y,0,1,e);
Jloc[3] = J(x,y,1,1,e);
const double detJ = DetJ(x,y,e);
kernels::CalcInverse<2>(Jloc, Jinv);
const double weight = W(x,y);
const double u = cst_coeff ? cst_val0 : C(0,c,x,y,e);
const double v = cst_coeff ? cst_val1 : C(1,c,x,y,e);
QQ0(y,x) = Jinv[0]*u + Jinv[2]*v;
QQ1(y,x) = Jinv[1]*u + Jinv[3]*v;
QQ0(y,x) *= weight * detJ;
QQ1(y,x) *= weight * detJ;
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic2DGradTranspose(d,q,Bt,Gt,
QQ0,QQ1,DQ0,DQ1,
I,Y,c,e,byVDIM);
}
});
}
template<int D=0, int Q=0> static
void VectorDomainLFGradIntegratorAssemble3D(const int vdim,
const bool byVDIM,
const int ND,
const int NE,
const int d,
const int q,
const int *markers,
const double *b,
const double *g,
const int *idx,
const double *jacobians,
const double *detJ,
const double *weights,
const Vector &coeff,
double *y)
{
constexpr int DIM = 3;
constexpr bool USE_SMEM = D > 0 && Q > 0;
const bool cst_coeff = coeff.Size() == vdim*DIM;
const auto F = coeff.Read();
const auto M = Reshape(markers, NE);
const auto B = Reshape(b, q,d);
const auto G = Reshape(g, q,d);
const auto J = Reshape(jacobians, q,q,q, DIM,DIM, NE);
const auto DetJ = Reshape(detJ, q,q,q, NE);
const auto W = Reshape(weights, q,q,q);
const auto I = Reshape(idx, d,d,d, NE);
const auto C = cst_coeff ?
Reshape(F,DIM,vdim,1,1,1,1):
Reshape(F,DIM,vdim,q,q,q,NE);
auto Y = Reshape(y, byVDIM ? vdim : ND, byVDIM ? ND : vdim);
const int sm_size = 2*q*d + 6*q*q*q;
const int GRID = USE_SMEM ? 0 : 128;
double *gmem = ScratchMem<GRID>(sm_size);
MFEM_FORALL_3D_GRID(e, NE, q,q,1, GRID,
{
if (M(e) == 0) { /* ignore */ return; }
const int bid = MFEM_BLOCK_ID(x);
constexpr int SM_SIZE = 2*Q*D + 6*Q*Q*Q;
constexpr bool USE_SMEM = D > 0 && Q > 0;
MFEM_SHARED double SMEM[USE_SMEM ? SM_SIZE : 1];
double *sm = USE_SMEM ? SMEM : (gmem + sm_size*bid);
const DeviceMatrix Bt(DeviceMemAlloc(sm,q*d), d,q);
const DeviceMatrix Gt(DeviceMemAlloc(sm,q*d), d,q);
kernels::internal::LoadBGt(d,q,B,G,Bt,Gt);
const DeviceCube QQ0(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceCube QQ1(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceCube QQ2(DeviceMemAlloc(sm,q*q*q), q,q,q);
const DeviceCube QD0(DeviceMemAlloc(sm,q*q*q), q,q,d);
const DeviceCube QD1(DeviceMemAlloc(sm,q*q*q), q,q,d);
const DeviceCube QD2(DeviceMemAlloc(sm,q*q*q), q,q,d);
const DeviceCube DD0(QQ0,q,d,d);
const DeviceCube DD1(QQ1,q,d,d);
const DeviceCube DD2(QQ2,q,d,d);
for (int c = 0; c < vdim; ++c)
{
const double cst_val_0 = C(0,c,0,0,0,0);
const double cst_val_1 = C(1,c,0,0,0,0);
const double cst_val_2 = C(2,c,0,0,0,0);
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
for (int z = 0; z < q; ++z)
{
double Jloc[9], Jinv[9];
for (int j = 0; j < 3; j++)
{
for (int i = 0; i < 3; i++)
{
Jloc[i+3*j] = J(x,y,z,i,j,e);
}
}
const double detJ = DetJ(x,y,z,e);
kernels::CalcInverse<3>(Jloc, Jinv);
const double weight = W(x,y,z);
const double u = cst_coeff ? cst_val_0 : C(0,c,x,y,z,e);
const double v = cst_coeff ? cst_val_1 : C(1,c,x,y,z,e);
const double w = cst_coeff ? cst_val_2 : C(2,c,x,y,z,e);
QQ0(z,y,x) = Jinv[0]*u + Jinv[3]*v + Jinv[6]*w;
QQ1(z,y,x) = Jinv[1]*u + Jinv[4]*v + Jinv[7]*w;
QQ2(z,y,x) = Jinv[2]*u + Jinv[5]*v + Jinv[8]*w;
QQ0(z,y,x) *= weight * detJ;
QQ1(z,y,x) *= weight * detJ;
QQ2(z,y,x) *= weight * detJ;
}
}
}
MFEM_SYNC_THREAD;
kernels::internal::Atomic3DGrad(d,q,Bt,Gt,
QQ0,QQ1,QQ2,
QD0,QD1,QD2,
DD0,DD1,DD2,
I,Y,c,e,byVDIM);
}
});
}
} // namespace linearform_extension
} // namespace internal
} // namespace mfem
+102
View File
@@ -0,0 +1,102 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void VectorDomainLFIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
const int vdim = fes.GetVDim();
GetOrder_f gof = [](const int el_order) { return 2.0 * el_order; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, gof);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
coeff = vcQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient *vQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = vQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == vdim*NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
Vector Qvec(vdim);
coeff.SetSize(vdim * NQ * NE);
auto C = Reshape(coeff.HostWrite(), vdim, NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
Q.Eval(Qvec, T, ir->IntPoint(q));
for (int c=0; c<vdim; ++c) { C(c,q,e) = Qvec[c]; }
}
}
}
LinearFormExtensionKernel_f ker = nullptr;
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
if (dim==2) { ker = VectorDomainLFIntegratorAssemble2D<>; }
if (dim==3) { ker = VectorDomainLFIntegratorAssemble3D<>; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1
case 0x322: ker=VectorDomainLFIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFIntegratorAssemble3D<5,5>; break;
// 3D kernels, q=p+2
case 0x323: ker=VectorDomainLFIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFIntegratorAssemble3D<5,6>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem
+116
View File
@@ -0,0 +1,116 @@
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "lininteg_domain.hpp"
#include "lininteg_domain_grad.hpp"
namespace mfem
{
using namespace internal::linearform_extension;
void VectorDomainLFGradIntegrator::AssembleFull(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &y)
{
const int vdim = fes.GetVDim();
GetOrder_f gof = [](const int el_order) { return 2.0 * el_order; };
const IntegrationRule *ir = GetIntRuleFromOrder(fes, IntRule, gof);
Vector coeff;
const int NQ = ir->GetNPoints();
const int NE = fes.GetMesh()->GetNE();
const int NS = fes.GetMesh()->SpaceDimension();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
coeff = vcQ->GetVec();
}
else if (QuadratureFunctionCoefficient *qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = qfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == NE*NQ,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else if (VectorQuadratureFunctionCoefficient* vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qFun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == vdim * NS * NQ * NE,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
Vector Qvec(vdim);
coeff.SetSize(vdim * NQ * NE);
auto C = Reshape(coeff.HostWrite(), vdim, NQ, NE);
for (int e = 0; e < NE; ++e)
{
ElementTransformation &Tr = *fes.GetElementTransformation(e);
for (int q = 0; q < NQ; ++q)
{
Q.Eval(Qvec, Tr, ir->IntPoint(q));
for (int c = 0; c<vdim; ++c) { C(c,q,e) = Qvec[c]; }
}
}
}
LinearFormExtensionKernel_f ker = nullptr;
const int id = GetKernelId(fes,ir);
const int dim = fes.GetMesh()->Dimension();
if (dim==2) { ker=VectorDomainLFGradIntegratorAssemble2D; }
if (dim==3) { ker=VectorDomainLFGradIntegratorAssemble3D; }
switch (id)
{
// 2D kernels, q=p+1
case 0x222: ker=VectorDomainLFGradIntegratorAssemble2D<2,2>; break;
case 0x233: ker=VectorDomainLFGradIntegratorAssemble2D<3,3>; break;
case 0x244: ker=VectorDomainLFGradIntegratorAssemble2D<4,4>; break;
case 0x255: ker=VectorDomainLFGradIntegratorAssemble2D<5,5>; break;
// 2D kernels, q=p+2
case 0x223: ker=VectorDomainLFGradIntegratorAssemble2D<2,3>; break;
case 0x234: ker=VectorDomainLFGradIntegratorAssemble2D<3,4>; break;
case 0x245: ker=VectorDomainLFGradIntegratorAssemble2D<4,5>; break;
case 0x256: ker=VectorDomainLFGradIntegratorAssemble2D<5,6>; break;
// 3D kernels, q=p+1
case 0x322: ker=VectorDomainLFGradIntegratorAssemble3D<2,2>; break;
case 0x333: ker=VectorDomainLFGradIntegratorAssemble3D<3,3>; break;
case 0x344: ker=VectorDomainLFGradIntegratorAssemble3D<4,4>; break;
case 0x355: ker=VectorDomainLFGradIntegratorAssemble3D<5,5>; break;
// 3D kernels, q=p+2
case 0x323: ker=VectorDomainLFGradIntegratorAssemble3D<2,3>; break;
case 0x334: ker=VectorDomainLFGradIntegratorAssemble3D<3,4>; break;
case 0x345: ker=VectorDomainLFGradIntegratorAssemble3D<4,5>; break;
case 0x356: ker=VectorDomainLFGradIntegratorAssemble3D<5,6>; break;
}
MFEM_VERIFY(ker, "Unexpected kernel error!");
Launch(ker,fes,ir,coeff,markers,y);
}
} // namespace mfem

Some files were not shown because too many files have changed in this diff Show More