Compare commits
1
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
b86dd9e455 |
+16
-16
@@ -15,10 +15,8 @@ install:
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||||
- msmpisdk.msi /passive
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- set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
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# Install METIS, use a mirror because the original source server is not always
|
||||
# up. Original url:
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||||
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
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- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
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# Install METIS
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- ps: Start-FileDownload 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz'
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- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
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- cd metis-5.1.0
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- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
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@@ -28,24 +26,26 @@ install:
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- cd ..
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|
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# Install hypre
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- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
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- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
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- cd hypre-2.19.0/src
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- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
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||||
- ps: Start-FileDownload 'https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz'
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- 7z x hypre-2.10.0b.tar.gz -so | 7z x -si -ttar > nul
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- cd hypre-2.10.0b
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- cmake -Hsrc -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
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# - cmake -Hsrc -Bbuild -DCMAKE_BUILD_TYPE=Release -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
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- cmake --build build
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- cmake --build build --target install
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- cd ../..
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- cd ..
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|
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# MFEM
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before_build:
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- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
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- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
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- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2.10.0b\src\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2.10.0b\src\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
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- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2.10.0b\src\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2.10.0b\src\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
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build_script:
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- cmake --build build_parallel --config Release -j 4
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- cmake --build build_serial --config Release -j 4
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- cmake --build build_serial --target exec --config Release -j 4
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- cmake --build build_parallel
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- cmake --build build_serial
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- cmake --build build_serial --target exec
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after_build:
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||||
- cd build_serial
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- ctest -C Release --output-on-failure
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# - cmake --build build_parallel --target check
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- cmake --build build_serial --target RUN_TESTS
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||||
|
||||
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@@ -1,12 +0,0 @@
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# extends https://github.com/jupyterhub/repo2docker/blob/main/repo2docker/buildpacks/conda/environment.yml
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# see https://mybinder.readthedocs.io/en/latest/using/config_files.html#environment-yml-install-a-conda-environment
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channels:
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- conda-forge
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dependencies:
|
||||
- xeus-cling=0.13.0
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- xwidgets=0.26.0
|
||||
# NOTE: it's possible these aren't needed for the lab frontend
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- widgetsnbextension=3.5.1
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||||
- pip
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||||
- pip:
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- glvis==0.3.2
|
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@@ -1,26 +0,0 @@
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#!/bin/bash
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set -e
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||||
# cling is installed here (in bin) and will look in {dir}/include and {dir}/lib
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# without extra intervention (jk it doesn't look in {dir}/lib unless something
|
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# has been #included from {dir}/include first...)
|
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install_dir=/srv/conda/envs/notebook
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mkdir -p $install_dir
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|
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# build and install mfem, which is the directory we start in
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make serial SHARED=YES -j8
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make install PREFIX=$install_dir
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|
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# install xeus-glvis
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git clone https://github.com/GLVis/xeus-glvis.git
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pushd xeus-glvis
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make install prefix=$install_dir
|
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popd
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|
||||
# install jupyter-lab extension
|
||||
jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build
|
||||
jupyter labextension install glvis-jupyter
|
||||
|
||||
# fixup kernelspec, we could probably do this from sh but ¯\_(ツ)_/¯
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python .binder/update_kernel_env.py
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@@ -1,14 +0,0 @@
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||||
# Update the LD_LIBRARY_PATH of the C++14 kernel so it can find mfem without
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# extra pragma cling statements
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import json
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|
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kernelspec = "/srv/conda/envs/notebook/share/jupyter/kernels/xcpp14/kernel.json"
|
||||
|
||||
with open(kernelspec, "r") as f:
|
||||
obj = json.load(f)
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||||
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||||
obj["env"] = {"LD_LIBRARY_PATH": "/srv/conda/envs/notebook/lib"}
|
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with open(kernelspec, "w") as f:
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json.dump(obj, f)
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||||
@@ -1,32 +0,0 @@
|
||||
codecov:
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||||
require_ci_to_pass: yes
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||||
|
||||
coverage:
|
||||
precision: 2
|
||||
round: nearest
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||||
range: "0...100"
|
||||
status:
|
||||
patch:
|
||||
default:
|
||||
target: auto
|
||||
threshold: 0%
|
||||
base: auto
|
||||
branches:
|
||||
- master
|
||||
if_ci_failed: error
|
||||
informational: true
|
||||
only_pulls: true
|
||||
project:
|
||||
default:
|
||||
target: auto # compares coverage to the previous base commit
|
||||
threshold: 1% # allows variations around the target
|
||||
base: auto
|
||||
branches:
|
||||
- master
|
||||
if_ci_failed: error
|
||||
only_pulls: true
|
||||
|
||||
github_checks:
|
||||
annotations: false
|
||||
|
||||
comment: false
|
||||
@@ -1,61 +0,0 @@
|
||||
# Configuration for probot-stale - https://github.com/probot/stale
|
||||
|
||||
# Number of days of inactivity before an Issue or Pull Request becomes stale
|
||||
daysUntilStale: 30
|
||||
|
||||
# Number of days of inactivity before an Issue or Pull Request with the stale
|
||||
# label is closed. Set to false to disable. If disabled, issues still need to
|
||||
# be closed manually, but will remain marked as stale.
|
||||
daysUntilClose: 7
|
||||
|
||||
# Only issues or pull requests with all of these labels are check if stale.
|
||||
# Defaults to `[]` (disabled)
|
||||
onlyLabels: []
|
||||
|
||||
# Issues or Pull Requests with these labels will never be considered stale. Set
|
||||
# to `[]` to disable
|
||||
exemptLabels:
|
||||
- bug
|
||||
- WIP
|
||||
- ready-for-review
|
||||
- in-review
|
||||
- in-next
|
||||
|
||||
# Set to true to ignore issues in a project (defaults to false)
|
||||
exemptProjects: false
|
||||
|
||||
# Set to true to ignore issues in a milestone (defaults to false)
|
||||
exemptMilestones: false
|
||||
|
||||
# Set to true to ignore issues with an assignee (defaults to false)
|
||||
exemptAssignees: false
|
||||
|
||||
# Label to use when marking an issue as stale
|
||||
staleLabel: stale
|
||||
|
||||
# Comment to post when marking an issue as stale. Set to `false` to disable
|
||||
markComment: >
|
||||
:warning: This issue or PR has been automatically marked as stale because it has not
|
||||
had any activity in the last month. *If no activity occurs in the next week, it will
|
||||
be automatically closed.* Thank you for your contributions.
|
||||
|
||||
# Comment to post when closing a stale issue. Set to `false` to disable
|
||||
closeComment: false
|
||||
|
||||
# Limit the number of actions per hour, from 1-30. Default is 30
|
||||
limitPerRun: 30
|
||||
|
||||
# Limit to only `issues` or `pulls`
|
||||
# only: issues
|
||||
|
||||
# Optionally, specify configuration settings that are specific to just 'issues' or 'pulls':
|
||||
# pulls:
|
||||
# daysUntilStale: 30
|
||||
# markComment: >
|
||||
# This pull request has been automatically marked as stale because it has not had
|
||||
# recent activity. It will be closed if no further activity occurs. Thank you
|
||||
# for your contributions.
|
||||
|
||||
# issues:
|
||||
# exemptLabels:
|
||||
# - confirmed
|
||||
@@ -1,208 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# In this CI section, we build different variants of mfem and run test on them.
|
||||
name: builds-and-tests
|
||||
|
||||
# Github actions can use the default "GITHUB_TOKEN". By default, this token
|
||||
# is set to have permissive access. However, this is not a good practice
|
||||
# security-wise. Here we use an external action, so we restrict the
|
||||
# permission to the minimum required.
|
||||
# When the 'permissions' is set, all the scopes not mentioned are set to the
|
||||
# most restrictive setting. So the following is enough.
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
MFEM_TOP_DIR: mfem
|
||||
|
||||
# Note for future improvements:
|
||||
#
|
||||
# We cannot reuse cached dependencies and have to build them for each target
|
||||
# although they could be shared sometimes. That's because Github cache Action
|
||||
# has no read-only mode. But there is a PR ready for this
|
||||
# (https://github.com/actions/cache/pull/489)
|
||||
|
||||
jobs:
|
||||
builds-and-tests:
|
||||
strategy:
|
||||
matrix:
|
||||
os: [ubuntu-18.04, macos-10.15]
|
||||
target: [dbg, opt]
|
||||
mpi: [seq, par]
|
||||
build-system: [make]
|
||||
hypre-target: [int32]
|
||||
# 'include' allows us to:
|
||||
# - Add a variable to all jobs without creating a new matrix dimension.
|
||||
# Codecov is defined that way.
|
||||
# - Add a new combination.
|
||||
# 'build-system: cmake' and 'hypre-target: int64'
|
||||
#
|
||||
# note: we will gather coverage info for any non-debug run except the
|
||||
# CMake build.
|
||||
include:
|
||||
- target: dbg
|
||||
codecov: NO
|
||||
- target: opt
|
||||
codecov: YES
|
||||
- os: ubuntu-18.04
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
- os: ubuntu-18.04
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int64
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
|
||||
runs-on: ${{ matrix.os }}
|
||||
|
||||
steps:
|
||||
# This external action allows to interrupt a workflow already running on
|
||||
# the same branch to save resource
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
# Checkout MFEM in "mfem" subdirectory. Final path:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
- name: get MPI (Linux)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-18.04'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-18.04'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
|
||||
- name: Set up Homebrew
|
||||
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
|
||||
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-10.15'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install lcov
|
||||
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.0
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.0
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.0
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.0
|
||||
with:
|
||||
os: ${{ matrix.os }}
|
||||
target: ${{ matrix.target }}
|
||||
codecov: ${{ matrix.codecov }}
|
||||
mpi: ${{ matrix.mpi }}
|
||||
build-system: ${{ matrix.build-system }}
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
- name: checks
|
||||
if: matrix.build-system == 'make' && matrix.target == 'dbg'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make check
|
||||
|
||||
- name: unit tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make unittest
|
||||
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make test
|
||||
|
||||
- name: cmake unit tests
|
||||
if: matrix.build-system == 'cmake'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.0
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
@@ -1,100 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: build-analysis
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
COVERAGE_ENV: mfem-coverage
|
||||
|
||||
jobs:
|
||||
gitignore:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.0
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.0
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: int32
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.0
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.0
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: mfem
|
||||
|
||||
- name: test (no clean)
|
||||
run: |
|
||||
cd mfem && make test-noclean
|
||||
|
||||
- name: gitignore
|
||||
run: |
|
||||
cd mfem/tests/scripts
|
||||
./runtest gitignore
|
||||
@@ -1,113 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: repo-check
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
|
||||
jobs:
|
||||
file-headers-check:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
run: |
|
||||
./config/githooks/pre-push --copyright
|
||||
|
||||
continue-on-error: true
|
||||
|
||||
- name: license check
|
||||
id: license
|
||||
run: |
|
||||
./config/githooks/pre-push --license
|
||||
continue-on-error: true
|
||||
|
||||
- name: release check
|
||||
id: release
|
||||
run: |
|
||||
./config/githooks/pre-push --release
|
||||
continue-on-error: true
|
||||
|
||||
- name: wrap-up
|
||||
if: steps.copyright.outcome != 'success' || steps.license.outcome != 'success' || steps.release.outcome != 'success'
|
||||
run: |
|
||||
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
|
||||
echo "copyright check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
|
||||
echo "license check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
|
||||
echo "release check failed, unroll log for details"
|
||||
fi
|
||||
exit 1
|
||||
|
||||
code-style:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
sudo apt-get install astyle=3.1-1ubuntu2
|
||||
|
||||
- name: style check
|
||||
run: |
|
||||
./config/githooks/pre-push --style
|
||||
|
||||
documentation:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
|
||||
- name: build documentation
|
||||
run: |
|
||||
cd tests/scripts
|
||||
./runtest documentation
|
||||
|
||||
branch-history:
|
||||
if: github.ref != 'refs/heads/next' && github.ref != 'refs/heads/master'
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: branch-history
|
||||
run: |
|
||||
# We override origin to make sure we point to the main repo.
|
||||
# This is to have consistent test results on PRs from forks.
|
||||
git remote remove origin
|
||||
git remote add origin https://github.com/mfem/mfem.git
|
||||
git checkout -b gh-actions-branch-history
|
||||
./config/githooks/pre-push --history
|
||||
+43
-199
@@ -9,7 +9,6 @@
|
||||
# Object and library files
|
||||
*.o
|
||||
/libmfem.*
|
||||
/miniapps/common/libmfem-common.*
|
||||
|
||||
# CMake generated files
|
||||
CMakeCache.txt
|
||||
@@ -26,12 +25,9 @@ CMakeFiles/
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
doc/CodeDocumentation
|
||||
doc/undoc.log
|
||||
doc/warnings.log
|
||||
|
||||
# Temporary files created by the tests.
|
||||
*.stderr
|
||||
@@ -45,21 +41,18 @@ doc/warnings.log
|
||||
|
||||
# Example and miniapp binaries and outputs
|
||||
|
||||
examples/ex[0-9]
|
||||
examples/ex[0-9]p
|
||||
examples/ex[1-9]
|
||||
examples/ex[1-9]p
|
||||
examples/ex1[04-9]
|
||||
examples/ex1[0-9]p
|
||||
examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
examples/ex30
|
||||
examples/ex30p
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
examples/mesh.*
|
||||
examples/ex5.mesh
|
||||
examples/Example5*
|
||||
examples/ParaView
|
||||
examples/Example9*
|
||||
examples/Example15*
|
||||
examples/Example16*
|
||||
@@ -67,9 +60,6 @@ examples/sphere_refined.*
|
||||
examples/sol.*
|
||||
examples/sol_u.*
|
||||
examples/sol_p.*
|
||||
examples/sol_r.*
|
||||
examples/sol_i.*
|
||||
examples/ex6p-checkpoint.*
|
||||
examples/ex9.mesh
|
||||
examples/ex9-mesh.*
|
||||
examples/ex9-init.*
|
||||
@@ -78,10 +68,6 @@ examples/deformed.*
|
||||
examples/velocity.*
|
||||
examples/elastic_energy.*
|
||||
examples/mode_*
|
||||
examples/ex5-p-*.bp
|
||||
examples/ex9-p-*.bp
|
||||
examples/ex12-p-*.bp
|
||||
examples/ex16-p-*.bp
|
||||
examples/ex16.mesh
|
||||
examples/ex16-mesh.*
|
||||
examples/ex16-init.*
|
||||
@@ -96,69 +82,15 @@ examples/ex20.dat
|
||||
examples/ex20p_?????.dat
|
||||
examples/gnuplot_ex20.inp
|
||||
examples/gnuplot_ex20p.inp
|
||||
examples/ex21*.mesh
|
||||
examples/ex21*.sol
|
||||
examples/ex21p_*.*
|
||||
examples/ex23-*.gf
|
||||
examples/ex23*.mesh
|
||||
examples/Example23*
|
||||
examples/ex25.mesh
|
||||
examples/ex25-*.gf
|
||||
examples/ex25p-*.*
|
||||
examples/ex28_*
|
||||
examples/ex28p_*
|
||||
examples/flux.*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
examples/amgx/.logamgx
|
||||
examples/amgx/refined.mesh
|
||||
examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/gingko/ex1
|
||||
examples/gingko/refined.mesh
|
||||
examples/gingko/sol.gf
|
||||
examples/gingko/mesh.*
|
||||
examples/gingko/sol.*
|
||||
|
||||
examples/hiop/ex9
|
||||
examples/hiop/ex9p
|
||||
examples/hiop/ex9.mesh
|
||||
examples/hiop/ex9-mesh.*
|
||||
examples/hiop/ex9-init.*
|
||||
examples/hiop/ex9-final.*
|
||||
|
||||
examples/petsc/ex[1-69]p
|
||||
examples/petsc/ex1[0-1]p
|
||||
examples/petsc/mesh.*
|
||||
examples/petsc/sol.*
|
||||
examples/petsc/sol_p.*
|
||||
examples/petsc/sol_u.*
|
||||
examples/petsc/Example5*
|
||||
examples/petsc/ex9.mesh
|
||||
examples/petsc/ex9-mesh.*
|
||||
examples/petsc/ex9-init.*
|
||||
examples/petsc/ex9-final.*
|
||||
examples/petsc/Example9*
|
||||
examples/petsc/deformed.*
|
||||
examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
examples/pumi/sol.*
|
||||
examples/pumi/displaced.mesh
|
||||
examples/ex22*.mesh
|
||||
examples/ex22*.sol
|
||||
examples/ex22p_*.*
|
||||
|
||||
examples/sundials/ex9
|
||||
examples/sundials/ex1[06]
|
||||
examples/sundials/ex9p
|
||||
examples/sundials/ex1[06]p
|
||||
|
||||
examples/sundials/ex9.mesh
|
||||
examples/sundials/ex9-mesh.*
|
||||
examples/sundials/ex9-init.*
|
||||
@@ -173,169 +105,81 @@ examples/sundials/ex16-init.*
|
||||
examples/sundials/ex16-final.*
|
||||
examples/sundials/Example16*
|
||||
|
||||
examples/superlu/ex1p
|
||||
examples/superlu/mesh.*
|
||||
examples/superlu/sol.*
|
||||
examples/petsc/ex[1-69]p
|
||||
examples/petsc/ex10p
|
||||
|
||||
miniapps/adjoint/cvsRoberts_ASAi_dns
|
||||
miniapps/adjoint/adjoint_advection_diffusion
|
||||
examples/petsc/mesh.*
|
||||
examples/petsc/sol.*
|
||||
examples/petsc/sol_p.*
|
||||
examples/petsc/sol_u.*
|
||||
examples/petsc/Example5*
|
||||
examples/petsc/ex9-mesh.*
|
||||
examples/petsc/ex9-init.*
|
||||
examples/petsc/ex9-final.*
|
||||
examples/petsc/Example9*
|
||||
examples/petsc/deformed.*
|
||||
examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
examples/pumi/sol.*
|
||||
examples/pumi/displaced.mesh
|
||||
|
||||
miniapps/electromagnetics/volta
|
||||
miniapps/electromagnetics/tesla
|
||||
miniapps/electromagnetics/maxwell
|
||||
miniapps/electromagnetics/joule
|
||||
|
||||
miniapps/electromagnetics/Volta-AMR*
|
||||
miniapps/electromagnetics/Tesla-AMR*
|
||||
miniapps/electromagnetics/Maxwell-Parallel*
|
||||
miniapps/electromagnetics/Joule_*
|
||||
|
||||
miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
miniapps/gslib/findpts
|
||||
miniapps/gslib/pfindpts
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
miniapps/meshing/toroid
|
||||
miniapps/meshing/twist
|
||||
miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/shaper.mesh
|
||||
miniapps/meshing/extruder.mesh
|
||||
miniapps/meshing/trimmer.mesh
|
||||
miniapps/meshing/optimized*
|
||||
miniapps/meshing/perturbed*
|
||||
miniapps/meshing/polar-nc.mesh
|
||||
|
||||
miniapps/mtop/parheat
|
||||
miniapps/mtop/ParHeat*
|
||||
miniapps/mtop/seqheat
|
||||
miniapps/mtop/SeqHeat*
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
|
||||
miniapps/autodiff/paradiff
|
||||
miniapps/autodiff/seqadiff
|
||||
miniapps/autodiff/seqtest
|
||||
miniapps/autodiff/par_example
|
||||
miniapps/autodiff/seq_example
|
||||
miniapps/autodiff/seq_test
|
||||
miniapps/autodiff/Exampl*
|
||||
miniapps/performance/refined.mesh
|
||||
miniapps/performance/mesh.*
|
||||
miniapps/performance/sol.*
|
||||
|
||||
miniapps/navier/navier_mms
|
||||
miniapps/navier/navier_kovasznay
|
||||
miniapps/navier/navier_kovasznay_vs
|
||||
miniapps/navier/navier_tgv
|
||||
miniapps/navier/navier_shear
|
||||
miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/ex1
|
||||
miniapps/nurbs/ex1p
|
||||
miniapps/nurbs/ex11p
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
miniapps/performance/refined.mesh
|
||||
miniapps/performance/mesh.*
|
||||
miniapps/performance/sol.*
|
||||
|
||||
miniapps/shifted/distance
|
||||
miniapps/shifted/ParaViewDistance
|
||||
miniapps/shifted/diffusion
|
||||
miniapps/shifted/diffusion.mesh
|
||||
miniapps/shifted/diffusion.gf
|
||||
miniapps/shifted/ParaViewDiffusion
|
||||
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/get-values
|
||||
|
||||
miniapps/toys/automata
|
||||
miniapps/toys/life
|
||||
miniapps/toys/mandel
|
||||
miniapps/toys/rubik
|
||||
miniapps/toys/snake
|
||||
miniapps/toys/lissajous
|
||||
miniapps/toys/mondrian
|
||||
miniapps/toys/snake-init.mesh
|
||||
miniapps/toys/snake-user.mesh
|
||||
miniapps/toys/snake-joined.mesh
|
||||
miniapps/toys/snake-c*.mesh
|
||||
miniapps/toys/automata.gf
|
||||
miniapps/toys/automata.mesh
|
||||
miniapps/toys/rubik-init.mesh
|
||||
miniapps/toys/mandel.mesh
|
||||
miniapps/toys/life.gf
|
||||
miniapps/toys/life.mesh
|
||||
miniapps/toys/lissajous.mesh
|
||||
miniapps/toys/lissajous.gf
|
||||
miniapps/toys/mondrian.mesh
|
||||
|
||||
miniapps/solvers/block-solvers
|
||||
miniapps/solvers/lor_solvers
|
||||
miniapps/solvers/plor_solvers
|
||||
miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
tests/unit/punit_tests
|
||||
tests/unit/cunit_tests
|
||||
tests/unit/pcunit_tests
|
||||
tests/unit/sedov_tests_*
|
||||
tests/unit/psedov_tests_*
|
||||
tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
tests/benchmarks/bench_tmop
|
||||
tests/benchmarks/bench_vector
|
||||
tests/benchmarks/bench_virtuals
|
||||
|
||||
# Test script output
|
||||
tests/scripts/*.err
|
||||
tests/scripts/*.out
|
||||
tests/scripts/*.msg
|
||||
|
||||
# Other tests
|
||||
tests/convergence/rates
|
||||
tests/convergence/prates
|
||||
tests/par-mesh-format/ex1p
|
||||
|
||||
# VPATH builds
|
||||
build-*/*
|
||||
|
||||
# PETSc automated build
|
||||
petsc-build/*
|
||||
pkg.gitcommit
|
||||
|
||||
# Jupyter Notebook Checkpoints
|
||||
.ipynb_checkpoints
|
||||
|
||||
@@ -1,96 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# General GitLab pipelines configurations for supercomputers and Linux clusters
|
||||
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
|
||||
# LLNL-specific!
|
||||
|
||||
|
||||
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
|
||||
# the preceding stages to complete before to start. However, we sometimes use
|
||||
# the "needs" keyword and express the DAG of jobs for more efficiency.
|
||||
# - We use setup and setup_baseline phases to download content outside of mfem
|
||||
# directory.
|
||||
# - Allocate/Release is where quartz resource are allocated/released once for all.
|
||||
# - Build and Test is where we build and MFEM for multiple toolchains.
|
||||
# - Baseline_checks gathers baseline-type test suites execution
|
||||
# - Baseline_publish, only available on master, allows to update baseline
|
||||
# results
|
||||
stages:
|
||||
- sub-pipelines
|
||||
|
||||
variables:
|
||||
CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
|
||||
USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
|
||||
SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
|
||||
AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
|
||||
# MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
|
||||
# used in '.gitlab/configs/<machine>-config.yml':
|
||||
MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
|
||||
|
||||
# Defines the default choice for updating the saved baseline results. By default
|
||||
# the baseline can only be updated from the master branch. This variable offers
|
||||
# the option to manually ask for rebaselining from another branch if necessary.
|
||||
REBASELINE: "NO"
|
||||
AUTOTEST: "NO"
|
||||
# AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
|
||||
# * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
|
||||
# files to the MFEM/autotest repo.
|
||||
# * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
|
||||
# files to the MFEM/autotest repo. Instead they will just show the contents
|
||||
# of the report files and remove them.
|
||||
AUTOTEST_COMMIT: "YES"
|
||||
|
||||
# Trigger subpipelines:
|
||||
quartz-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/quartz-build-and-test.yml
|
||||
strategy: depend
|
||||
|
||||
quartz-baseline:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
REBASELINE: "${REBASELINE}"
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/quartz-baseline.yml
|
||||
strategy: depend
|
||||
|
||||
lassen-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/lassen-build-and-test.yml
|
||||
strategy: depend
|
||||
|
||||
corona-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/corona-build-and-test.yml
|
||||
strategy: depend
|
||||
@@ -1,94 +0,0 @@
|
||||
Finite Element Discretization Library
|
||||
__
|
||||
_ __ ___ / _| ___ _ __ ___
|
||||
| '_ ` _ \ | |_ / _ \| '_ ` _ \
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
|
||||
|
||||
This directory contains most of the GitLab CI configuration. MFEM runs both PR
|
||||
and nightly testing on GitLab.
|
||||
|
||||
# Structure
|
||||
|
||||
## Top level
|
||||
|
||||
The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo.
|
||||
This file only defines one stage, in which we trigger several
|
||||
sub-pipelines.
|
||||
|
||||
We use sub-pipelines to isolate the test for one combination of `machine`
|
||||
and `test type`.
|
||||
|
||||
Machines typically include:
|
||||
|
||||
* Quartz: Intel bi-socket x86
|
||||
* Lassen: Power9 + Nvidia GPU
|
||||
* Corona: AMD GPU
|
||||
|
||||
Test types include:
|
||||
|
||||
* Build and test: Spack driven build of dependencies, mfem build, mfem
|
||||
test
|
||||
* Baseline: Script driven build of dependencies, thorough testing
|
||||
|
||||
⚠️ The sub-pipeline design allows to add a new machine or a new test type without
|
||||
altering the scheduling, execution and displaying of the others.
|
||||
|
||||
## Sub-pipelines
|
||||
|
||||
Each file is this directory is the root configuration file for one
|
||||
sub-pipeline. The naming reflects the corresponding couple (`machine`,
|
||||
`test_type`).
|
||||
|
||||
Those files define the *stages* and the *jobs* for the sub-pipeline. They
|
||||
also contain any configuration that cannot be shared. For the most part
|
||||
though, the configuration is shared and is placed in `.gitlab/configs`.
|
||||
|
||||
We try to keep scripts out of the CI config and share them among similar
|
||||
jobs. They are gathered in `.gitlab/scripts`.
|
||||
|
||||
## Scripts
|
||||
|
||||
Scripts specific to the CI only are in `.gitlab/scripts`. It is best practice
|
||||
to keep scripts outside the CI configuration (no bash scripts embedded in a
|
||||
yaml file) because it helps with readability, maintenance and also with
|
||||
transition to another CI system.
|
||||
|
||||
⚠️ Most of the scripts there are driven by environment variables and do not have a
|
||||
usage function. This should be improved.
|
||||
|
||||
|
||||
# More testing
|
||||
|
||||
## Adding a new target to a build_and_test pipeline
|
||||
|
||||
`build_and_test` pipelines rely on Spack to install dependencies. Spack is
|
||||
driven by Uberenv which helps freezing Spack configuration: the goal being to
|
||||
point to specific commit in Spack and isolate its configuration so that it is
|
||||
not influenced by the user environment. More documentation about this can be
|
||||
found in `tests/gitlab`.
|
||||
|
||||
In the end, the MFEM target for which to build the dependencies is expressed
|
||||
with a spack spec of MFEM, within the limits permitted by the MFEM spack
|
||||
package.
|
||||
|
||||
In any build-and-test sub-pipeline a job basically consists in defining the
|
||||
spack spec to use. Adding a job on quartz for example resumes to:
|
||||
|
||||
```yaml
|
||||
<job_name>:
|
||||
variables:
|
||||
SPEC: "<spack_spec>"
|
||||
extends: .build_and_test_on_quartz
|
||||
```
|
||||
|
||||
The remaining and non trivial work is to make sure this spec is working. To
|
||||
test a spec before adding it, or reproduce a CI configuration, please refer to
|
||||
`tests/gitlab/reproduce-ci-jobs-interactively.md`.
|
||||
|
||||
⚠️ It is assumed that the spack spec applies to `mfem@develop`. That's why in the
|
||||
CI all the specs start with the compiler or the variants to apply to mfem. The
|
||||
mechanism still works with a full spec.
|
||||
@@ -1,36 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# We define the following GitLab pipeline variables:
|
||||
variables:
|
||||
|
||||
# The path to the shared resource between all jobs. For example, external
|
||||
# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
|
||||
# once for all targets, so that build happen here. The BUILD_ROOT is unique to
|
||||
# the pipeline, preventing any form of concurrency with other pipelines. This
|
||||
# also means that the BUILD_ROOT directory will never be cleaned.
|
||||
# TODO: add a clean-up mechanism
|
||||
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
|
||||
|
||||
# On LLNL's quartz, there is only one allocation shared among jobs in order to
|
||||
# save time and resource. This allocation has to be uniquely named so that we
|
||||
# are sure to retrieve it.
|
||||
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
|
||||
|
||||
# Git repositories used in the pipeline
|
||||
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
|
||||
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
|
||||
AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
|
||||
MFEM_DATA_REPO: https://github.com/mfem/data.git
|
||||
|
||||
# Directory used to place artifacts.
|
||||
ARTIFACTS_DIR: artifacts
|
||||
SLURM_OVERLAP: 1
|
||||
@@ -1,59 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipeline configuration for the Corona machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: corona
|
||||
|
||||
.on_corona:
|
||||
tags:
|
||||
- shell
|
||||
- corona
|
||||
rules:
|
||||
# Don’t run corona jobs if...
|
||||
# Note: This makes corona an "opt-in" machine. To activate builds on corona
|
||||
# for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
|
||||
# "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
|
||||
# pipeline there.
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
|
||||
when: never
|
||||
# Don’t run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always release resource
|
||||
- if: '$CI_JOB_NAME =~ /release_resource/'
|
||||
when: always
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
# Default is to run if previous stage succeeded
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic corona build job, extending build script
|
||||
.build_and_test_on_corona:
|
||||
extends: [.on_corona]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=12
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -1,49 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Lassen machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: lassen
|
||||
|
||||
.on_lassen:
|
||||
tags:
|
||||
- shell
|
||||
- lassen
|
||||
rules:
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
- when: on_success
|
||||
|
||||
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
|
||||
# pre-allocation the same way slurm does. We use pdebug queue on lassen
|
||||
# to speed-up the allocation. However this would not be scalable to
|
||||
# multiple builds.
|
||||
.build_and_test_on_lassen:
|
||||
extends: [.on_lassen]
|
||||
stage: build_and_test
|
||||
script:
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
|
||||
- lalloc 1 -W 30 -q pdebug tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
needs: [setup]
|
||||
@@ -1,55 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Quartz machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: quartz
|
||||
|
||||
.on_quartz:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
rules:
|
||||
# Don't run quartz jobs if...
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"'
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always release resource
|
||||
- if: '$CI_JOB_NAME =~ /release_resource/'
|
||||
when: always
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
# Default is to run if previous stage succeeded
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic quartz build job, extending build script
|
||||
.build_and_test_on_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=12
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 30 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -1,81 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Jobs report
|
||||
.report_job_success:
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# Report SUCCESS while holding the file lock on 'autotest.lock'.
|
||||
# The next script uses the following environment variables:
|
||||
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
|
||||
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
|
||||
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
|
||||
err=$?
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
.report_job_failure:
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# Report FAILURE while holding the file lock on 'autotest.lock'.
|
||||
# The next script uses the following environment variables:
|
||||
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
|
||||
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
|
||||
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
|
||||
err=$?
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,72 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# The setup_baseline job doesn't rely on MFEM git repo. It prepares a
|
||||
# pipeline-wide working directory downloading/updating external repos.
|
||||
# TODO:
|
||||
# updating tests and tpls is not necessary anymore since pipelines are now
|
||||
# using unique directories so repo are never shared with another pipeline. This
|
||||
# is not memory efficient (we keep a lot of data), hence this reminder.
|
||||
setup_baseline:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
#
|
||||
# Setup ${BUILD_ROOT}/tpls and ${BUILD_ROOT}/tests:
|
||||
#
|
||||
- echo "MACHINE_NAME = ${MACHINE_NAME}"
|
||||
- echo "REBASELINE = ${REBASELINE}"
|
||||
- echo "AUTOTEST = ${AUTOTEST}"
|
||||
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
|
||||
- echo "BUILD_ROOT ${BUILD_ROOT}"
|
||||
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
|
||||
- if [ ! -d "tpls" ]; then git clone ${TPLS_REPO}; fi
|
||||
- if [ ! -d "tests" ]; then git clone ${TESTS_REPO}; fi
|
||||
- cd tpls && git pull && cd ..
|
||||
- cd tests && git pull origin && cd ..
|
||||
#
|
||||
# Setup ${AUTOTEST_ROOT}/autotest:
|
||||
#
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
|
||||
- command -v flock || echo "Required command 'flock' not found"
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# clone/update the autotest repo while holding the file lock on
|
||||
# 'autotest.lock'
|
||||
err=0
|
||||
if [[ ! -d "autotest" ]]; then
|
||||
git clone ${AUTOTEST_REPO}
|
||||
else
|
||||
cd autotest && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,94 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
|
||||
# script then symlinks the repo to the parent directory of the MFEM source
|
||||
# directory. Unit tests that depend on the mfem/data repo will then detect that
|
||||
# this directory is present and be enabled.
|
||||
setup:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
#
|
||||
# Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
|
||||
# and '.gitlab/configs/<machine>-config.yml'
|
||||
#
|
||||
- echo "MACHINE_NAME = ${MACHINE_NAME}"
|
||||
- echo "AUTOTEST = ${AUTOTEST}"
|
||||
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
|
||||
- echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
|
||||
- mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
|
||||
- command -v flock || echo "Required command 'flock' not found"
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (mfem-data.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
# clone/update the mfem/data repo while holding the file lock on
|
||||
# 'mfem-data.lock'
|
||||
err=0
|
||||
if [[ ! -d "mfem-data" ]]; then
|
||||
git clone ${MFEM_DATA_REPO} "mfem-data"
|
||||
else
|
||||
cd "mfem-data" && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> mfem-data.lock
|
||||
#
|
||||
# Setup ${AUTOTEST_ROOT}/autotest:
|
||||
#
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# clone/update the autotest repo while holding the file lock on
|
||||
# 'autotest.lock'
|
||||
err=0
|
||||
if [[ ! -d "autotest" ]]; then
|
||||
git clone ${AUTOTEST_REPO}
|
||||
else
|
||||
cd autotest && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,67 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- allocate_resource
|
||||
- build_and_test
|
||||
- release_resource_and_report
|
||||
|
||||
# Slurm shared allocation
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_corona
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --partition=mi60 --time=30 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
needs: [setup]
|
||||
|
||||
# Build and test jobs, simply provide a spec
|
||||
rocm_gcc_8.3.1:
|
||||
variables:
|
||||
SPEC: "@develop%gcc@8.3.1+rocm amdgpu_target=gfx906"
|
||||
extends: .build_and_test_on_corona
|
||||
needs: [allocate_resource]
|
||||
|
||||
# Release slurm allocation
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_corona
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
|
||||
needs: [rocm_gcc_8.3.1]
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_corona
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_corona
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/corona-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,39 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_8:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: report
|
||||
extends:
|
||||
- .on_lassen
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: report
|
||||
extends:
|
||||
- .on_lassen
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/lassen-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,133 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
variables:
|
||||
BASELINE_TEST: baseline
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- baseline_check
|
||||
- baseline_report
|
||||
- cleanup
|
||||
- baseline_publish
|
||||
|
||||
baselinecheck_mfem_intel_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_check
|
||||
variables:
|
||||
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
|
||||
# when call the runtest script in MFEM test repo.
|
||||
# Note: the value must be consistent with the setup performed in
|
||||
# .gitlab/configs/setup-baseline.yml.
|
||||
TPLS_DIR: ${BUILD_ROOT}/tpls
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${TPLS_DIR}
|
||||
# Used by the tests in MFEM/tests:
|
||||
- export MFEM_TEST_NP=32
|
||||
# The next script uses the following environment variables:
|
||||
# * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
|
||||
# * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
|
||||
- .gitlab/scripts/baseline
|
||||
artifacts:
|
||||
when: always
|
||||
paths:
|
||||
- ${ARTIFACTS_DIR}
|
||||
allow_failure: true
|
||||
|
||||
cleanup:
|
||||
extends: .on_quartz
|
||||
stage: cleanup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_report
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# ----------------------
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
|
||||
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
|
||||
fi
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
err=$?
|
||||
# ----------------------
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
baselinepublish_mfem_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_publish
|
||||
rules:
|
||||
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
|
||||
- if: '$REBASELINE == "YES"'
|
||||
when: manual
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${PWD}
|
||||
- echo ${ARTIFACTS_DIR}
|
||||
- ls -lA ${ARTIFACTS_DIR}
|
||||
- .gitlab/scripts/rebaseline
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/quartz-config.yml
|
||||
- local: .gitlab/configs/setup-baseline.yml
|
||||
@@ -1,99 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- allocate_resource
|
||||
- build_and_test
|
||||
- release_resource_and_report
|
||||
|
||||
# Allocate
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --partition=pdebug --time=30 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_4_9_3:
|
||||
variables:
|
||||
SPEC: "%gcc@4.9.3 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_quartz
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_quartz
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/quartz-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,88 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# locals
|
||||
glob_err=${BASELINE_TEST}.err
|
||||
base=${BASELINE_TEST}-${SYS_TYPE}
|
||||
base_diff=${base}.diff
|
||||
base_patch=${base}.patch
|
||||
base_out=${base}.out
|
||||
artifacts_path=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}
|
||||
|
||||
# prepare
|
||||
cd ${BUILD_ROOT} || \
|
||||
{ echo "Invalid BUILD_ROOT=$BUILD_ROOT"; exit 1; }
|
||||
ln -snf ${CI_PROJECT_DIR} mfem
|
||||
cd tests
|
||||
[[ -d _${BASELINE_TEST} ]] && rm -rf _${BASELINE_TEST}
|
||||
mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
srun --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
srun --nodes=1 -t 60 -p mi60 ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
|
||||
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
if [[ -s ${glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${glob_err} file content";
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
exit 1;
|
||||
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${base_patch} or ${base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
# We create a .err file, because that's how we signal that there was a diff.
|
||||
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
|
||||
fi
|
||||
|
||||
if [[ ! -s ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
@@ -1,49 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# There will be collision between corona and quartz baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}
|
||||
#ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}-${MACHINE_NAME}
|
||||
|
||||
PATCH_FILE=${ARTIFACT_PATH}.patch
|
||||
FULL_FILE=${ARTIFACT_PATH}.out
|
||||
DIFF_FILE=${ARTIFACT_PATH}.diff
|
||||
|
||||
# There will be collision between corona and quartz baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
SAVED_NAME=baseline-${SYS_TYPE}.saved
|
||||
#SAVED_NAME=baseline-${SYS_TYPE}-${MACHINE_NAME}.saved
|
||||
|
||||
cd ${BUILD_ROOT}/tests
|
||||
|
||||
if [[ ! -f "${DIFF_FILE}" ]]
|
||||
then
|
||||
echo "Nothing to be done: no relevant change in baseline"
|
||||
exit 0
|
||||
elif [[ -f "${PATCH_FILE}" ]]
|
||||
then
|
||||
patch "${SAVED_NAME}" < "${PATCH_FILE}"
|
||||
elif [[ -f "${FULL_FILE}" ]]
|
||||
then
|
||||
cp "${FULL_FILE}" "${SAVED_NAME}"
|
||||
else
|
||||
echo "File missing: expected ${PATCH_FILE} or ${FULL_FILE}"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
git add "${SAVED_NAME}"
|
||||
git commit -m "${SYS_TYPE} (${MACHINE_NAME}) rebaselined in GitLab pipeline ${CI_PIPELINE_ID}"
|
||||
git push origin master
|
||||
@@ -1,45 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
echo "Runs if there was at least one failure on ${MACHINE_NAME}"
|
||||
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
|
||||
|
||||
printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
|
||||
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
|
||||
|
||||
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
# Create 'autotest-email.html' to indicate failure:
|
||||
cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
|
||||
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
echo "Can only run if all the ${MACHINE_NAME} jobs passed"
|
||||
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
|
||||
|
||||
printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
|
||||
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
|
||||
|
||||
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# This script takes a seed for a directory name and appends it with a counter
|
||||
# incremented until it can create a new directory with it.
|
||||
|
||||
# Usage:
|
||||
#
|
||||
# Expects 1 argument: a string that is use as a seed for the directory name.
|
||||
#
|
||||
# > rundir="desired_name"
|
||||
# > rundir=$(./safe_create_rundir $rundir)
|
||||
|
||||
set -o errexit
|
||||
set -o nounset
|
||||
|
||||
rundir=${1:-""}
|
||||
if [[ -z ${rundir} ]]; then
|
||||
>&2 echo "The script expects a string as argument for directory creation."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
if ! mkdir ${rundir}; then
|
||||
n=1
|
||||
while ! mkdir ${rundir}_${n}
|
||||
do
|
||||
n=$((n+1))
|
||||
done
|
||||
rundir=${rundir}_${n}
|
||||
fi
|
||||
|
||||
echo $rundir
|
||||
+264
@@ -0,0 +1,264 @@
|
||||
sudo: false
|
||||
|
||||
language: cpp
|
||||
|
||||
matrix:
|
||||
include:
|
||||
#
|
||||
# Linux
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
env: DEBUG=YES
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
env: DEBUG=NO
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=test
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
addons:
|
||||
apt:
|
||||
# sources:
|
||||
# - ubuntu-toolchain-r-test
|
||||
packages:
|
||||
# GCC 4.9
|
||||
# - g++-4.9
|
||||
# MPICH
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
# OpenMPI
|
||||
# - openmpi-bin
|
||||
# - libopenmpi-dev
|
||||
env: DEBUG=YES
|
||||
MPI=YES
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
NPROCS=2
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
addons:
|
||||
apt:
|
||||
# sources:
|
||||
# - ubuntu-toolchain-r-test
|
||||
packages:
|
||||
# GCC 4.9
|
||||
# - g++-4.9
|
||||
# MPICH
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
# OpenMPI
|
||||
# - openmpi-bin
|
||||
# - libopenmpi-dev
|
||||
env: DEBUG=NO
|
||||
MPI=YES
|
||||
CODECOV=YES
|
||||
MFEM_TEST_TARGET=test
|
||||
NPROCS=2
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
#
|
||||
# Mac OS X
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=YES
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=NO
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=test
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=YES
|
||||
MPI=YES
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
NPROCS=4
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=NO
|
||||
MPI=YES
|
||||
CODECOV=YES
|
||||
MFEM_TEST_TARGET=test
|
||||
NPROCS=4
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
|
||||
|
||||
before_install:
|
||||
# No addon for brew yet, have to install OSX packages this way.
|
||||
# - if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
|
||||
# brew install open-mpi;
|
||||
# fi
|
||||
|
||||
# On Mac OS X, build and cache OpenMPI 2.1.1:
|
||||
- if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
|
||||
if [ ! -e $HOME/local-cached/bin/mpicc ]; then
|
||||
mkdir -p $HOME/builds && cd $HOME/builds &&
|
||||
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.bz2 &&
|
||||
tar jxf openmpi-2.1.1.tar.bz2 &&
|
||||
mkdir openmpi-build && cd openmpi-build &&
|
||||
../openmpi-2.1.1/configure --prefix=$HOME/local-cached &&
|
||||
make -j3 all && make install;
|
||||
fi;
|
||||
PATH=$HOME/local-cached/bin:$PATH;
|
||||
cd $TRAVIS_BUILD_DIR;
|
||||
fi
|
||||
|
||||
# Update environment to find g++ 4.9 installation first.
|
||||
# - if [ $TRAVIS_OS_NAME == "linux" ]; then
|
||||
# mkdir -p latest-gcc-symlinks;
|
||||
# ln -s /usr/bin/g++-4.9 latest-gcc-symlinks/g++;
|
||||
# ln -s /usr/bin/gcc-4.9 latest-gcc-symlinks/gcc;
|
||||
# ln -s /usr/bin/gcov-4.9 latest-gcc-symlinks/gcov;
|
||||
# export PATH=$PWD/latest-gcc-symlinks:$PATH;
|
||||
# fi
|
||||
|
||||
# Install tool to upload code coverage reports to coveralls.io
|
||||
- if [ "$CODECOV" == "YES" ]; then
|
||||
export PYTHONUSERBASE=$HOME/local;
|
||||
pip install --user cpp-coveralls;
|
||||
pip install --user pyyaml;
|
||||
PATH=$HOME/local/bin:$PATH;
|
||||
fi
|
||||
|
||||
install:
|
||||
# Set MPI compilers, print compiler version
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ "$TRAVIS_OS_NAME" == "linux" ]; then
|
||||
export MPICH_CC="$CC";
|
||||
export MPICH_CXX="$CXX";
|
||||
else
|
||||
export OMPI_CC="$CC";
|
||||
export OMPI_CXX="$CXX";
|
||||
mpic++ --showme:version;
|
||||
fi;
|
||||
mpic++ -v;
|
||||
else
|
||||
$CXX -v;
|
||||
fi
|
||||
|
||||
# Back out of the mfem directory to install the libraries
|
||||
- cd ..
|
||||
|
||||
# hypre
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e hypre-2.10.0b/src/hypre/lib/libHYPRE.a ]; then
|
||||
wget https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz --no-check-certificate;
|
||||
rm -rf hypre-2.10.0b;
|
||||
tar xvzf hypre-2.10.0b.tar.gz;
|
||||
cd hypre-2.10.0b/src;
|
||||
./configure --disable-fortran --without-fei CC=mpicc CXX=mpic++;
|
||||
make -j3;
|
||||
cd ../..;
|
||||
else
|
||||
echo "Reusing cached hypre-2.10.0b/";
|
||||
fi;
|
||||
ln -s hypre-2.10.0b hypre;
|
||||
else
|
||||
echo "Serial build, not using hypre";
|
||||
fi
|
||||
|
||||
# METIS
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e metis-4.0/libmetis.a ]; then
|
||||
wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz;
|
||||
tar xvzf metis-4.0.3.tar.gz;
|
||||
make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
|
||||
rm -rf metis-4.0;
|
||||
mv metis-4.0.3 metis-4.0;
|
||||
else
|
||||
echo "Reusing cached metis-4.0/";
|
||||
fi;
|
||||
fi
|
||||
|
||||
script:
|
||||
# Compiler
|
||||
- if [ $MPI == "YES" ]; then
|
||||
export MYCXX=mpic++;
|
||||
else
|
||||
export MYCXX="$CXX";
|
||||
fi
|
||||
|
||||
# Print the compiler version
|
||||
- $MYCXX -v
|
||||
|
||||
# Set some variables
|
||||
- cd $TRAVIS_BUILD_DIR;
|
||||
CPPFLAGS="";
|
||||
SKIP_TEST_DIRS="";
|
||||
if [ "$CODECOV" == "YES" ]; then
|
||||
CPPFLAGS="--coverage -g";
|
||||
fi;
|
||||
if [ "$CXX" == "clang++" ]; then
|
||||
export MFEM_PERF_SW=clang;
|
||||
fi
|
||||
|
||||
# Configure the library
|
||||
- make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG MFEM_CXX="$MYCXX"
|
||||
MFEM_MPI_NP=$NPROCS CPPFLAGS="$CPPFLAGS"
|
||||
# Show the configuration
|
||||
- make info
|
||||
# Build the library
|
||||
- make -j3
|
||||
# Build the examples and the miniapps
|
||||
- make -j3 all
|
||||
# Run tests
|
||||
- make $MFEM_TEST_TARGET SKIP_TEST_DIRS="$SKIP_TEST_DIRS"
|
||||
|
||||
after_success:
|
||||
- if [ "$CODECOV" == "YES" ]; then
|
||||
coveralls --include fem --include general --include linalg --include
|
||||
mesh --exclude /usr --gcov-options '\-lp' --root $TRAVIS_BUILD_DIR;
|
||||
fi
|
||||
@@ -1,66 +0,0 @@
|
||||
cff-version: 1.2.0
|
||||
message: "If you use MFEM, please cite it as follows."
|
||||
authors:
|
||||
- family-names: "MFEM Team"
|
||||
title: "MFEM: Modular Finite Element Methods [Software]"
|
||||
doi: 10.11578/dc.20171025.1248
|
||||
url: "https://mfem.org"
|
||||
preferred-citation:
|
||||
type: article
|
||||
authors:
|
||||
- family-names: "Anderson"
|
||||
given-names: "Robert"
|
||||
orcid: "https://orcid.org/0000-0002-3508-9944"
|
||||
- family-names: "Andrej"
|
||||
given-names: "Julian"
|
||||
orcid: "https://orcid.org/0000-0001-7661-4840"
|
||||
- family-names: "Barker"
|
||||
given-names: "Andrew"
|
||||
orcid: "https://orcid.org/0000-0003-3572-911X"
|
||||
- family-names: "Bramwell"
|
||||
given-names: "Jamie"
|
||||
- family-names: "Camier"
|
||||
given-names: "Jean-Sylvain"
|
||||
orcid: "https://orcid.org/0000-0003-2421-1999"
|
||||
- family-names: "Cerveny"
|
||||
given-names: "Jakub"
|
||||
orcid: "https://orcid.org/0000-0003-4231-2531"
|
||||
- family-names: "Dobrev"
|
||||
given-names: "Veselin"
|
||||
orcid: "https://orcid.org/0000-0003-1793-5622"
|
||||
- family-names: "Dudouit"
|
||||
given-names: "Yohann"
|
||||
orcid: "https://orcid.org/0000-0001-5831-561X"
|
||||
- family-names: "Fisher"
|
||||
given-names: "Aaron"
|
||||
- family-names: "Kolev"
|
||||
given-names: "Tzanio"
|
||||
orcid: "https://orcid.org/0000-0002-2810-3090"
|
||||
- family-names: "Pazner"
|
||||
given-names: "Will"
|
||||
orcid: "https://orcid.org/0000-0003-4885-2934"
|
||||
- family-names: "Stowell"
|
||||
given-names: "Mark"
|
||||
orcid: "https://orcid.org/0000-0002-5389-7435"
|
||||
- family-names: "Tomov"
|
||||
given-names: "Vladimir"
|
||||
orcid: "https://orcid.org/0000-0002-1846-6816"
|
||||
- family-names: "Akkerman"
|
||||
given-names: "Ido"
|
||||
orcid: "https://orcid.org/0000-0002-5937-0300"
|
||||
- family-names: "Dahm"
|
||||
given-names: "Johann"
|
||||
orcid: "https://orcid.org/0000-0001-9657-3564"
|
||||
- family-names: "Medina"
|
||||
given-names: "David"
|
||||
- family-names: "Zampini"
|
||||
given-names: "Stefano"
|
||||
orcid: "https://orcid.org/0000-0002-0435-0433"
|
||||
doi: "10.1016/j.camwa.2020.06.009"
|
||||
journal: "Computers \\& Mathematics with Applications"
|
||||
month: 1
|
||||
start: 42 # First page number
|
||||
end: 74 # Last page number
|
||||
title: "MFEM: A Modular Finite Element Methods Library"
|
||||
volume: 81
|
||||
year: 2021
|
||||
+60
-214
@@ -1,24 +1,20 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
|
||||
cmake_minimum_required(VERSION 3.1)
|
||||
cmake_minimum_required(VERSION 2.8.11)
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
# Require C++11 and disable compiler-specific extensions
|
||||
set(CMAKE_CXX_STANDARD 11)
|
||||
if (MFEM_USE_GINKGO)
|
||||
set(CMAKE_CXX_STANDARD 14)
|
||||
endif()
|
||||
set(CMAKE_CXX_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
|
||||
@@ -54,7 +50,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.3.1)
|
||||
set(${PROJECT_NAME}_VERSION 3.4.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -90,52 +86,11 @@ include("${CMAKE_CURRENT_SOURCE_DIR}/config/XSDKDefaults.cmake")
|
||||
|
||||
# Enable languages.
|
||||
enable_language(CXX)
|
||||
if (MINGW)
|
||||
# MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
|
||||
# 25/25p) unless we use '-std=gnu++11':
|
||||
set(CMAKE_CXX_EXTENSIONS ON)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
if (MFEM_USE_HIP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
|
||||
endif()
|
||||
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
|
||||
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
|
||||
# Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
|
||||
if (NOT CMAKE_CUDA_HOST_COMPILER)
|
||||
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
enable_language(CUDA)
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
if (MFEM_USE_GINKGO)
|
||||
set(CMAKE_CUDA_STANDARD 14)
|
||||
endif()
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CUDA_FLAGS "--expt-extended-lambda")
|
||||
if (CMAKE_VERSION VERSION_LESS 3.18.0)
|
||||
set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
|
||||
elseif (NOT CMAKE_CUDA_ARCHITECTURES)
|
||||
string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
|
||||
if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
|
||||
set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
|
||||
endif()
|
||||
else()
|
||||
set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
|
||||
endif()
|
||||
message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
|
||||
if (CMAKE_VERSION VERSION_LESS 3.12.0)
|
||||
# CMake versions 3.8 and 3.9 require this to work; 3.10 and 3.11 are not
|
||||
# tested and may not actually need this (but should be ok to keep).
|
||||
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
|
||||
"CUDA flags set for MFEM" FORCE)
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
endif()
|
||||
|
||||
if (XSDK_ENABLE_C)
|
||||
@@ -184,12 +139,6 @@ endif()
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MPI REQUIRED)
|
||||
set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
|
||||
if (MFEM_MPIEXEC)
|
||||
set(MPIEXEC ${MFEM_MPIEXEC})
|
||||
endif()
|
||||
if (MFEM_MPIEXEC_NP)
|
||||
set(MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
|
||||
endif()
|
||||
# Parallel MFEM depends on hypre
|
||||
find_package(HYPRE REQUIRED)
|
||||
set(MFEM_HYPRE_VERSION ${HYPRE_VERSION})
|
||||
@@ -200,13 +149,9 @@ if (MFEM_USE_MPI)
|
||||
message(FATAL_ERROR "PETSc version >= 3.8.0 is required")
|
||||
endif()
|
||||
set(PETSC_INCLUDE_DIRS ${PETSC_INCLUDES})
|
||||
if (MFEM_USE_SLEPC)
|
||||
find_package(SLEPc REQUIRED config)
|
||||
message(STATUS "Found SLEPc version ${SLEPC_VERSION}")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(PKGS_NEED_MPI SUPERLU MUMPS PETSC SLEPC STRUMPACK PUMI)
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK PUMI)
|
||||
foreach(PKG IN LISTS PKGS_NEED_MPI)
|
||||
if (MFEM_USE_${PKG})
|
||||
message(STATUS "Disabling package ${PKG} - requires MPI")
|
||||
@@ -219,17 +164,8 @@ if (MFEM_USE_METIS)
|
||||
find_package(METIS REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_GINKGO)
|
||||
find_package(Ginkgo REQUIRED)
|
||||
if (Ginkgo_FOUND)
|
||||
get_target_property(Ginkgo_INCLUDE_DIRS
|
||||
Ginkgo::ginkgo INTERFACE_INCLUDE_DIRECTORIES)
|
||||
set(Ginkgo_LIBRARIES Ginkgo::ginkgo)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# zlib
|
||||
if (MFEM_USE_ZLIB)
|
||||
# GZSTREAM -> zlib
|
||||
if (MFEM_USE_GZSTREAM)
|
||||
find_package(ZLIB REQUIRED)
|
||||
endif()
|
||||
|
||||
@@ -251,12 +187,6 @@ if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
|
||||
if(APPLE)
|
||||
# On macOS, the compiler needs additional help to find the <omp.h> header.
|
||||
# See issue #2642 for more information.
|
||||
include_directories(${OpenMP_CXX_INCLUDE_DIRS})
|
||||
endif(APPLE)
|
||||
endif()
|
||||
|
||||
# SuiteSparse (before SUNDIALS which may depend on KLU)
|
||||
@@ -267,14 +197,12 @@ endif()
|
||||
|
||||
# SUNDIALS
|
||||
if (MFEM_USE_SUNDIALS)
|
||||
set(SUNDIALS_COMPONENTS CVODES ARKODE KINSOL NVector_Serial)
|
||||
if (MFEM_USE_MPI)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Parallel NVector_MPIPlusX)
|
||||
if (NOT MFEM_USE_MPI)
|
||||
find_package(SUNDIALS REQUIRED NVector_Serial CVODE ARKODE KINSOL)
|
||||
else()
|
||||
find_package(SUNDIALS REQUIRED
|
||||
NVector_Serial NVector_Parallel NVector_ParHyp CVODE ARKODE KINSOL)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
# Mesquite
|
||||
@@ -291,15 +219,6 @@ if (MFEM_USE_SUPERLU)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MUMPS can only be enabled in parallel
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# STRUMPACK can only be enabled in parallel
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -309,16 +228,16 @@ if (MFEM_USE_STRUMPACK)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Gecko
|
||||
if (MFEM_USE_GECKO)
|
||||
find_package(Gecko REQUIRED)
|
||||
endif()
|
||||
|
||||
# GnuTLS
|
||||
if (MFEM_USE_GNUTLS)
|
||||
find_package(_GnuTLS REQUIRED)
|
||||
endif()
|
||||
|
||||
# GSLIB
|
||||
if (MFEM_USE_GSLIB)
|
||||
find_package(GSLIB REQUIRED)
|
||||
endif()
|
||||
|
||||
# NetCDF
|
||||
if (MFEM_USE_NETCDF)
|
||||
find_package(NetCDF REQUIRED)
|
||||
@@ -329,20 +248,8 @@ if (MFEM_USE_MPFR)
|
||||
find_package(MPFR REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CEED)
|
||||
find_package(libCEED REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_AMGX)
|
||||
find_package(AMGX REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CONDUIT)
|
||||
find_package(Conduit REQUIRED conduit relay blueprint)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_FMS)
|
||||
find_package(FMS REQUIRED fms)
|
||||
find_package(Conduit REQUIRED conduit relay blueprint )
|
||||
endif()
|
||||
|
||||
# Axom/Sidre
|
||||
@@ -366,16 +273,20 @@ if (MFEM_USE_PUMI)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# HiOp optimizer
|
||||
if (MFEM_USE_HIOP)
|
||||
find_package(HIOP REQUIRED)
|
||||
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
|
||||
endif()
|
||||
|
||||
# CoDiPack package
|
||||
if (MFEM_USE_CODIPACK)
|
||||
find_package(CODIPACK REQUIRED)
|
||||
# find_package updates CODIPACK_FOUND, CODIPACK_INCLUDE_DIRS, CODIPACK_LIBRARIES
|
||||
# CUDA
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CMAKE_CUDA_FLAGS "-arch=${CUDA_ARCH} --expt-extended-lambda"
|
||||
CACHE STRING "CUDA flags set for MFEM" FORCE)
|
||||
if (MFEM_USE_MPI)
|
||||
set(CUDA_CCBIN_COMPILER ${MPI_CXX_COMPILER})
|
||||
else()
|
||||
set(CUDA_CCBIN_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
string(APPEND CMAKE_CUDA_FLAGS " -ccbin ${CUDA_CCBIN_COMPILER}")
|
||||
set(MFEM_USE_MM YES CACHE BOOL "Enable MFEM's memory manager" FORCE)
|
||||
endif()
|
||||
|
||||
# OCCA
|
||||
@@ -388,49 +299,6 @@ if (MFEM_USE_RAJA)
|
||||
find_package(RAJA REQUIRED)
|
||||
endif()
|
||||
|
||||
# UMPIRE
|
||||
if (MFEM_USE_UMPIRE)
|
||||
find_package(UMPIRE REQUIRED)
|
||||
endif()
|
||||
|
||||
# GOOGLE-BENCHMARK
|
||||
if (MFEM_USE_BENCHMARK)
|
||||
find_package(Benchmark REQUIRED)
|
||||
endif()
|
||||
|
||||
# Caliper
|
||||
if (MFEM_USE_CALIPER)
|
||||
find_package(Caliper REQUIRED)
|
||||
endif()
|
||||
|
||||
# AMD HIP
|
||||
if (MFEM_USE_HIP)
|
||||
find_package(HIP REQUIRED)
|
||||
if (HIP_ARCH)
|
||||
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
|
||||
list(APPEND HIP_HIPCC_FLAGS "--amdgpu-target=${HIP_ARCH}")
|
||||
if (MFEM_USE_GINKGO)
|
||||
list(APPEND HIP_HIPCC_FLAGS "-std=c++14")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# ADIOS2 for parallel I/O
|
||||
if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
endif()
|
||||
|
||||
# MFEM_TIMER_TYPE
|
||||
if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
if (APPLE)
|
||||
@@ -454,11 +322,9 @@ endif()
|
||||
# With newer versions of SuiteSparse which include METIS header using 64-bit
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS PETSC
|
||||
SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB NETCDF
|
||||
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
|
||||
CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG MPI_CXX)
|
||||
|
||||
set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
|
||||
MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT GECKO GNUTLS NETCDF MPFR PUMI
|
||||
POSIXCLOCKS MFEMBacktrace ZLIB OCCA RAJA)
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
set(TPL_INCLUDE_DIRS "")
|
||||
@@ -477,9 +343,6 @@ include_directories(${TPL_INCLUDE_DIRS})
|
||||
if (OPENMP_FOUND)
|
||||
message(STATUS "MFEM: using package OpenMP")
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
@@ -499,9 +362,9 @@ foreach(DIR IN LISTS MFEM_SOURCE_DIRS)
|
||||
endforeach()
|
||||
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${SOURCES} PROPERTIES LANGUAGE CUDA)
|
||||
elseif(MFEM_USE_HIP)
|
||||
set_source_files_properties(${SOURCES} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
|
||||
foreach(file IN LISTS SOURCES)
|
||||
set_property(SOURCE ${file} PROPERTY LANGUAGE CUDA)
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
add_subdirectory(config)
|
||||
@@ -520,20 +383,24 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX} CACHE PATH
|
||||
"The MFEM install directory" FORCE)
|
||||
|
||||
# Declaring the library
|
||||
mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
if (CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
else()
|
||||
target_link_libraries(mfem ${TPL_LIBRARIES})
|
||||
endif()
|
||||
if (MINGW)
|
||||
target_link_libraries(mfem PRIVATE ws2_32)
|
||||
target_link_libraries(mfem ws2_32)
|
||||
endif()
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
# If building out-of-source, define MFEM_CONFIG_FILE to point to the config file
|
||||
# inside the build directory.
|
||||
# If building out-of-source, define MFEM_BUILD_DIR to point to the build
|
||||
# directory.
|
||||
if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
target_compile_definitions(mfem PRIVATE
|
||||
"MFEM_CONFIG_FILE=\"${PROJECT_BINARY_DIR}/config/_config.hpp\"")
|
||||
"MFEM_BUILD_DIR=${PROJECT_BINARY_DIR}")
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
@@ -549,7 +416,7 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
"Writing substitute header --> \"${Header}\"")
|
||||
file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
|
||||
"// Auto-generated file.
|
||||
#define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
|
||||
#define MFEM_BUILD_DIR ${PROJECT_BINARY_DIR}
|
||||
#include \"${PROJECT_SOURCE_DIR}/${Header}\"
|
||||
")
|
||||
# This version will be installed in the top include directory:
|
||||
@@ -560,24 +427,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
set(MFEM_CUSTOM_TARGET_PREFIX CACHE STRING "")
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Examples, miniapps, benchmarks and testing
|
||||
# Examples, miniapps, and testing
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
# Enable testing and benchmarks if required
|
||||
# Enable testing if required
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
enable_testing()
|
||||
set(MFEM_ALL_TESTS_TARGET_NAME tests)
|
||||
add_mfem_target(${MFEM_ALL_TESTS_TARGET_NAME} OFF)
|
||||
add_subdirectory(tests EXCLUDE_FROM_ALL)
|
||||
|
||||
# Create a target for all benchmarks and, optionally, enable it.
|
||||
set(MFEM_ALL_BENCHMARKS_TARGET_NAME benchmarks)
|
||||
add_mfem_target(${MFEM_ALL_BENCHMARKS_TARGET_NAME}
|
||||
${MFEM_ENABLE_GOOGLE_BENCHMARKS})
|
||||
add_subdirectory(tests/benchmarks EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
|
||||
# Define a target that all examples and miniapps will depend on.
|
||||
@@ -587,11 +446,7 @@ add_custom_target(${MFEM_EXEC_PREREQUISITES_TARGET_NAME})
|
||||
# Create a target for all examples and, optionally, enable it.
|
||||
set(MFEM_ALL_EXAMPLES_TARGET_NAME examples)
|
||||
add_mfem_target(${MFEM_ALL_EXAMPLES_TARGET_NAME} ${MFEM_ENABLE_EXAMPLES})
|
||||
if (MFEM_ENABLE_EXAMPLES)
|
||||
add_subdirectory(examples) #install examples if enabled
|
||||
else()
|
||||
add_subdirectory(examples EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
add_subdirectory(examples EXCLUDE_FROM_ALL)
|
||||
|
||||
# Create a target for all miniapps and, optionally, enable it.
|
||||
set(MFEM_ALL_MINIAPPS_TARGET_NAME miniapps)
|
||||
@@ -601,7 +456,6 @@ add_subdirectory(miniapps EXCLUDE_FROM_ALL)
|
||||
# Target to build all executables, i.e. everything.
|
||||
add_custom_target(exec)
|
||||
add_dependencies(exec
|
||||
${MFEM_ALL_BENCHMARKS_TARGET_NAME}
|
||||
${MFEM_ALL_EXAMPLES_TARGET_NAME}
|
||||
${MFEM_ALL_MINIAPPS_TARGET_NAME}
|
||||
${MFEM_ALL_TESTS_TARGET_NAME})
|
||||
@@ -623,17 +477,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Add 'check' target - quick test
|
||||
set(MFEM_CHECK_TARGET_NAME ${MFEM_CUSTOM_TARGET_PREFIX}check)
|
||||
if (NOT MFEM_USE_MPI)
|
||||
add_custom_target(${MFEM_CHECK_TARGET_NAME}
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1_ser\" -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(${MFEM_CHECK_TARGET_NAME} ex1)
|
||||
add_dependencies(check ex1)
|
||||
else()
|
||||
add_custom_target(${MFEM_CHECK_TARGET_NAME}
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1p\" -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(${MFEM_CHECK_TARGET_NAME} ex1p)
|
||||
add_dependencies(check ex1p)
|
||||
endif()
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
@@ -683,13 +536,6 @@ if (MFEM_USE_OCCA)
|
||||
FILES_MATCHING PATTERN "*.okl")
|
||||
endif()
|
||||
|
||||
# Install the libCEED files
|
||||
if (MFEM_USE_CEED)
|
||||
install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "fem/ceed/*.h")
|
||||
endif()
|
||||
|
||||
# Install ${HEADERS}
|
||||
# ---
|
||||
# foreach (HDR ${HEADERS})
|
||||
|
||||
+130
-333
@@ -1,48 +1,39 @@
|
||||
<p align="center">
|
||||
<a href="https://mfem.org/"><img alt="mfem" src="https://mfem.org/img/logo-300.png"></a>
|
||||
<a href="http://mfem.org/"><img alt="mfem" src="http://mfem.org/img/logo-300.png"></a>
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/blob/master/COPYRIGHT"><img alt="License" src="https://img.shields.io/badge/License-LGPL--2.1-brightgreen.svg"></a>
|
||||
<a href="https://travis-ci.org/mfem/mfem"><img alt="Build Status" src="https://travis-ci.org/mfem/mfem.svg?branch=master"></a>
|
||||
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
|
||||
<a href="https://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
<a href="http://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
</p>
|
||||
|
||||
|
||||
# How to Contribute
|
||||
|
||||
The MFEM team welcomes contributions at all levels: bugfixes; code improvements;
|
||||
simplifications; new mesh, discretization or solver capabilities; improved
|
||||
documentation; new examples and miniapps; HPC performance improvements; etc.
|
||||
The MFEM team welcomes contributions at all levels: bugfixes; code
|
||||
improvements; simplifications; new mesh, discretization or solver
|
||||
capabilities; improved documentation; new examples and miniapps;
|
||||
HPC performance improvements; ...
|
||||
|
||||
MFEM is distributed under the terms of the BSD-3 license. All new contributions
|
||||
must be made under this license.
|
||||
|
||||
If you plan on contributing to MFEM, consider reviewing the
|
||||
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
|
||||
already exists for your desired feature or the bug you ran into. Use a pull
|
||||
request (PR) toward the `mfem:master` branch to propose your contribution. If
|
||||
you are planning significant code changes or have questions, you may want to
|
||||
open an [issue](https://github.com/mfem/mfem/issues) before issuing a PR. In
|
||||
addition to technical contributions, we are also interested in your results and
|
||||
[simulation images](https://mfem.org/gallery/), which you can share via a pull
|
||||
request in the [mfem/web](https://github.com/mfem/web) repo.
|
||||
Use a pull request (PR) toward the `mfem:master` branch to propose your
|
||||
contribution. If you are planning significant code changes, or have any
|
||||
questions, you can also open an [issue](https://github.com/mfem/mfem/issues)
|
||||
before issuing a PR. We also welcome your [simulation
|
||||
images](http://mfem.org/gallery/), which you can submit via a pull request in
|
||||
[mfem/web](https://github.com/mfem/web).
|
||||
|
||||
See the [Quick Summary](#quick-summary) section for the main highlights of our
|
||||
GitHub workflow. For more details, consult the following sections and refer
|
||||
back to them before issuing pull requests:
|
||||
|
||||
- [Quick Summary](#quick-summary)
|
||||
- [Code Overview](#code-overview)
|
||||
- [GitHub Workflow](#github-workflow)
|
||||
- [MFEM Organization](#mfem-organization)
|
||||
- [New Feature Development](#new-feature-development)
|
||||
- [Developer Guidelines](#developer-guidelines)
|
||||
- [Pull Requests](#pull-requests)
|
||||
- [MFEM PR Rules](#mfem-pr-rules)
|
||||
- [Pull Request Checklist](#pull-request-checklist)
|
||||
- [Master/Next Workflow](#masternext-workflow)
|
||||
- [Releases](#releases)
|
||||
@@ -54,7 +45,7 @@ back to them before issuing pull requests:
|
||||
Contributing to MFEM requires knowledge of Git and, likely, finite elements. If
|
||||
you are new to Git, see the [GitHub learning
|
||||
resources](https://help.github.com/articles/git-and-github-learning-resources/).
|
||||
To learn more about the finite element method, see our [FEM page](https://mfem.org/fem).
|
||||
To learn more about the finite element method, see our [FEM page](http://mfem.org/fem).
|
||||
|
||||
*By submitting a pull request, you are affirming the [Developer's Certificate of
|
||||
Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
@@ -66,18 +57,8 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
development branches off `mfem:master`.
|
||||
- Please follow the [developer guidelines](#developer-guidelines), in particular
|
||||
with regards to documentation and code styling.
|
||||
- Please do not commit large/binary files to the central repository (use a fork
|
||||
instead).
|
||||
- Pull requests should be issued toward `mfem:master`. Make sure
|
||||
to check the items off the [Pull Request Checklist](#pull-request-checklist) and
|
||||
follow the [MFEM PR Rules](#mfem-pr-rules).
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning two
|
||||
reviewers to evaluate the changes.
|
||||
- The reviewers have 3 weeks to evaluate the PR and work with the author to
|
||||
fix issues and implement improvements.
|
||||
- During review there should be no force pushes/rewriting history in the branch.
|
||||
- Pull requests should be issued toward `mfem:master`. Make sure
|
||||
to check the items off the [Pull Request Checklist](#pull-request-checklist).
|
||||
- After approval, MFEM developers merge the PR manually in the [mfem:next branch](#masternext-workflow).
|
||||
- After a week of testing in `mfem:next`, the original PR is merged in `mfem:master`.
|
||||
- We use [milestones](https://github.com/mfem/mfem/milestones) to coordinate the
|
||||
@@ -87,144 +68,116 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
|
||||
### Code Overview
|
||||
|
||||
#### Source code structure:
|
||||
- The MFEM library uses object-orient design principles which reflect, in code,
|
||||
the independent mathematical concepts of meshing, linear algebra and finite
|
||||
element spaces and operators.
|
||||
|
||||
The MFEM library uses object-oriented design principles which reflect, in code,
|
||||
the independent mathematical concepts of meshing, linear algebra and finite
|
||||
element spaces and operators.
|
||||
|
||||
The MFEM source code has the following structure:
|
||||
|
||||
```
|
||||
- The MFEM source code has the following structure:
|
||||
```
|
||||
.
|
||||
├── config
|
||||
│ ├── cmake
|
||||
│ └── githooks
|
||||
│ └── cmake
|
||||
│ └── modules
|
||||
├── data
|
||||
├── doc
|
||||
│ └── web
|
||||
│ └── examples
|
||||
├── examples
|
||||
│ ├── amgx
|
||||
│ ├── caliper
|
||||
│ ├── ginkgo
|
||||
│ ├── hiop
|
||||
│ ├── jupyter
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
| └── superlu
|
||||
│ └── sundials
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── qinterp
|
||||
│ └── tmop
|
||||
├── general
|
||||
├── linalg
|
||||
│ └── simd
|
||||
├── mesh
|
||||
├── miniapps
|
||||
│ ├── adjoint
|
||||
│ ├── autodiff
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
│ ├── navier
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
│ ├── performance
|
||||
│ ├── shifted
|
||||
│ ├── solvers
|
||||
│ ├── tools
|
||||
│ └── toys
|
||||
│ └── tools
|
||||
└── tests
|
||||
├── convergence
|
||||
├── gitlab
|
||||
├── mem_manager
|
||||
├── par-mesh-format
|
||||
├── scripts
|
||||
└── unit
|
||||
```
|
||||
├── unit
|
||||
│ ├── ...
|
||||
└── ...
|
||||
|
||||
#### Main directories and classes
|
||||
```
|
||||
|
||||
The main directories are `fem/`, `mesh/` and `linalg/` containing the C++
|
||||
classes implementing the finite element, mesh and linear algebra concepts
|
||||
respectively.
|
||||
- The main directories are `fem/`, `mesh/` and `linalg/` containing the C++
|
||||
classes implementing the finite element, mesh and linear algebra concepts
|
||||
respectively.
|
||||
|
||||
- The main mesh classes are:
|
||||
+ [`Mesh`](https://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](https://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](https://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
|
||||
+ [`Mesh`](http://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](http://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](http://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
|
||||
|
||||
- The main finite element classes are:
|
||||
+ [`FiniteElement`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
|
||||
+ [`FiniteElement`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
|
||||
|
||||
- The main linear algebra classes and sources are
|
||||
+ [`Operator`](https://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](https://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`Operator`](http://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](http://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
|
||||
#### Parallel implementation
|
||||
|
||||
Parallel MPI objects in MFEM inherit their serial counterparts, so a parallel
|
||||
mesh for example is just a serial mesh on each task plus the information on
|
||||
shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
- Parallel MPI objects in MFEM inherit their serial counterparts, so a parallel
|
||||
mesh for example is just a serial mesh on each task plus the information on
|
||||
shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
|
||||
- The main parallel classes are
|
||||
+ [`ParMesh`](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://mfem.github.io/doxygen/html/hypre_8hpp.html)
|
||||
+ [`ParMesh`](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](http://mfem.github.io/doxygen/html/hypre_8hpp.html)
|
||||
|
||||
#### GPU and general device support
|
||||
|
||||
GPU and multi-core CPU support is based on device kernels supporting different
|
||||
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
- GPU and multi-core CPU support is based on device kernels supporting different
|
||||
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://mfem.github.io/doxygen/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
|
||||
+ the [`MFEM_FORALL`](https://mfem.github.io/doxygen/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](https://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](https://mfem.github.io/doxygen/html/occa_8hpp.html) files
|
||||
+ [`Device`](http://mfem.github.io/doxygen/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](http://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
|
||||
+ the [`MFEM_FORALL`](http://mfem.github.io/doxygen/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](http://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](http://mfem.github.io/doxygen/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
- The `general/` directory contains C++ classes that serve as utilities for
|
||||
communication, error handling, arrays, (Boolean) tables, timing, etc.
|
||||
|
||||
- The `config/` directory contains build-related files, both for the plain
|
||||
Makefile and the CMake build options.
|
||||
- The `doc/` directory contains configuration for the Doxygen code documentation
|
||||
that can either be built locally or browsed online at
|
||||
https://mfem.github.io/doxygen/html/index.html.
|
||||
|
||||
#### Examples and tests
|
||||
- `examples` and `miniapps` respectively gather simple and more fully-featured
|
||||
demonstrations of the usage on MFEM. They both rely on `data/` for the
|
||||
collection of meshes.
|
||||
- The `doc/` directory contains configuration for the Doxygen code documentation
|
||||
that can either be build locally, or browsed online at
|
||||
http://mfem.github.io/doxygen/html/index.html.
|
||||
|
||||
- The `data/` directory contains a collection of small mesh files, that are used
|
||||
in the simple example codes and more fully-featured mini applications in the
|
||||
`examples/` and `miniapps/` directories.
|
||||
|
||||
- The `tests/` directory contains a unit test suite and will later contain more
|
||||
tests that run example codes.
|
||||
|
||||
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
|
||||
website.
|
||||
- See also the [code overview](http://mfem.org/code-overview/) section on the
|
||||
MFEM website.
|
||||
|
||||
## GitHub Workflow
|
||||
|
||||
The MFEM GitHub organization: https://github.com/mfem, is the main developer hub
|
||||
for the MFEM project.
|
||||
The GitHub organization, https://github.com/mfem, is the main developer hub for
|
||||
the MFEM project.
|
||||
|
||||
If you plan to make contributions or would like to stay up-to-date with changes
|
||||
If you plan to make contributions or will like to stay up-to-date with changes
|
||||
in the code, *we strongly encourage you to [join the MFEM organization](#mfem-organization)*.
|
||||
|
||||
This will simplify the workflow (by providing you additional permissions), and
|
||||
@@ -233,31 +186,34 @@ will allow us to reach you directly with project announcements.
|
||||
|
||||
### MFEM Organization
|
||||
|
||||
#### Getting started (GitHub)
|
||||
Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
+ Create the account at: [github.com/join](https://github.com/join).
|
||||
+ For easy identification, please add your full name and maybe a picture of you at:
|
||||
https://github.com/settings/profile.
|
||||
- Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
+ Create the account at: github.com/join.
|
||||
+ For easy identification, please add your name and maybe a picture of you at: https://github.com/settings/profile.
|
||||
+ To receive notification, set a primary email at: https://github.com/settings/emails.
|
||||
+ For password-less pull/push over SSH, add your SSH keys at: https://github.com/settings/keys.
|
||||
|
||||
#### Joining
|
||||
- [Contact us](#contact-information) for an invitation to join the MFEM GitHub
|
||||
organization. You will receive an invitation email, which you can directly accept.
|
||||
organization.
|
||||
|
||||
- You should receive an invitation email, which you can directly accept.
|
||||
Alternatively, *after logging into GitHub*, you can accept the invitation at
|
||||
the top of https://github.com/mfem.
|
||||
|
||||
- Consider making your membership public by going to https://github.com/orgs/mfem/people
|
||||
and clicking on the organization visibility drop box next to your name.
|
||||
and clicking on the organization visibility dropbox next to your name.
|
||||
|
||||
- Project discussions and announcements will be posted at
|
||||
https://github.com/orgs/mfem/teams/everyone.
|
||||
|
||||
#### Structure
|
||||
- The MFEM source code is in the [mfem](https://github.com/mfem/mfem)
|
||||
repository.
|
||||
|
||||
- The website and corresponding documentation are in the
|
||||
[web](https://github.com/mfem/web) repository.
|
||||
|
||||
- The [PyMFEM](https://github.com/mfem/PyMFEM) repository contains a Python
|
||||
wrapper for MFEM.
|
||||
|
||||
- The [data](https://github.com/mfem/data) repository contains additional
|
||||
(large) datafiles for MFEM.
|
||||
|
||||
@@ -265,9 +221,9 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
### New Feature Development
|
||||
|
||||
- A new feature should be important enough that at least one person, the
|
||||
author, is willing to work on it and be its champion.
|
||||
proposer, is willing to work on it and be its champion.
|
||||
|
||||
- The author creates a branch for the new feature (with suffix `-dev`), off
|
||||
- The proposer creates a branch for the new feature (with suffix `-dev`), off
|
||||
the `master` branch, or another existing feature branch, for example:
|
||||
|
||||
```
|
||||
@@ -310,13 +266,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- Lean code base is easier to understand by new collaborators.
|
||||
- New features should be added only if they are necessary or generally useful.
|
||||
- Introduction of language constructions not currently used in MFEM should be
|
||||
justified and generally avoided (to maintain portability to various systems
|
||||
and compilers, including early access hardware).
|
||||
justified and generally avoided (so we can build on cutting-edge systems).
|
||||
- We prefer basic C++ and the C++03 standard, to keep the code readable by
|
||||
a large audience and to make sure it compiles anywhere.
|
||||
|
||||
- *Keep the code general and reasonably efficient*
|
||||
- The main goal is fast prototyping for research and application development.
|
||||
- Main goal is fast prototyping for research.
|
||||
- When in doubt, generality wins over efficiency.
|
||||
- Respect the needs of different users (current and/or future).
|
||||
|
||||
@@ -329,22 +284,15 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
change the code by default.
|
||||
|
||||
- Code specifics
|
||||
- All new public, protected, and private classes, methods, data members, and
|
||||
functions have Doxygen-style documentation in source comments.
|
||||
- In addition to arguments and functionality, documentation should include the
|
||||
current limitations of the code, any background information that is
|
||||
implicitly assumed in the implementation, and the ownership and lifetime
|
||||
of data.
|
||||
- All significant new classes, methods and functions have Doxygen-style
|
||||
documentation in source comments.
|
||||
- Consistent code styling is enforced with `make style` in the top-level
|
||||
directory. This requires [Artistic Style](http://astyle.sourceforge.net) (we
|
||||
specifically use version 3.1). See also the file `config/mfem.astylerc`.
|
||||
specifically use version 2.05.1). See also the file `config/mfem.astylerc`.
|
||||
- Use `mfem::out` and `mfem::err` instead of `std::cout` and `std::cerr` in
|
||||
internal library code. (You can use `std` in examples and miniapps.)
|
||||
- When manually resolving conflicts during a merge, make sure to mention the
|
||||
conflicted files in the commit message.
|
||||
- All significant new features and changes should be documented in CHANGELOG.
|
||||
- New examples and miniapps should have documentation on the MFEM webpage.
|
||||
|
||||
|
||||
### Pull Requests
|
||||
|
||||
@@ -366,125 +314,14 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
|
||||
`[DISCUSS] Hybridized DG [hdg-dev]`
|
||||
|
||||
- If the PR is still a work in progress, add the `WIP` label to it and
|
||||
optionally the `[WIP]` prefix in the title.
|
||||
|
||||
- Add a description, appropriate labels and assign yourself to the PR. The MFEM
|
||||
team will add reviewers as appropriate.
|
||||
|
||||
- List outstanding TODO items in the description, see PR #222 for an example.
|
||||
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning
|
||||
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
|
||||
the PR and work with the author to implement improvements and fix issues.
|
||||
|
||||
- Once the `ready-for-review` label has been applied and reviewers have been
|
||||
assigned, the PR is considered under review. To help with the review process
|
||||
there should be no force pushes/rewriting history in the branch.
|
||||
|
||||
- After approval, the PR is [tested](#masternext-workflow) for a week with
|
||||
other approved PRs in the `mfem:next` branch.
|
||||
|
||||
- Consider manually running the tests in `tests/scripts` before merging in
|
||||
`mfem:next`, see the [README](tests/scripts/README) file in that directory
|
||||
for more details.
|
||||
|
||||
- Track the GitHub Actions and Appveyor [continuous integration](#automated-testing)
|
||||
builds at the end of the PR. These should generally run clean, so address any
|
||||
errors as soon as possible. Please ask if you are unsure how to do that.
|
||||
|
||||
- Note that some tests, such as the `branch-history` check in GitHub Actions
|
||||
are safeguards that are allowed to fail in certain cases.
|
||||
|
||||
- Other tests, such as the `code-style`, `documentation` and `gitignore`
|
||||
checks in GitHub Actions enforce MFEM-specific rules which are explained in
|
||||
the error messages and the `tests/scripts` directory.
|
||||
|
||||
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
|
||||
Actions can be triggered automatically before each push using git hooks. See
|
||||
the [git hooks README](config/githooks/README.md) for a detailed explanation.
|
||||
|
||||
- If triggered, track the status of the LLNL GitLab tests. If failing, ask
|
||||
one of the _LLNL developers_ for details.
|
||||
|
||||
|
||||
### MFEM PR Rules
|
||||
|
||||
The Pull Request (PR) approval process in MFEM is similar to the approval of papers in a peer-reviewed journal. In particular:
|
||||
|
||||
1. There is an MFEM board of "editors" that evaluates new PRs and assigns "reviewers" for each PR.
|
||||
|
||||
2. The assigned reviewers are responsible to carefully review and test the proposed PR.
|
||||
|
||||
3. A PR can be (manually) merged in the *next* branch only if 2 of the assigned reviewers have approved it and it has passed internal testing. This merge can be performed by any of the assigned reviewers or by any of the editors.
|
||||
|
||||
4. A PR can be merged in the *master* branch only if it has been tested successfully for a week in *next* and an editor has (optionally) taken a final look. This merge can be performed only by one of the editors.
|
||||
|
||||
#### Responsibilities of Editors
|
||||
|
||||
The current list of MFEM editors is:
|
||||
|
||||
- @v-dobrev (Veselin Dobrev)
|
||||
- @tzanio (Tzanio Kolev)
|
||||
- @pazner (Will Pazner)
|
||||
- @mlstowell (Mark Stowell)
|
||||
|
||||
**The responsibilities of the editors are:**
|
||||
|
||||
1. To assign appropriate milestone and labels for new PRs, e.g. *bugfix*, *minor*, *api-change*, *high-impact*, etc.
|
||||
|
||||
2. To assign at least 2 reviewers for new PRs. An editor can also be a reviewer. The editor, reviewers, and author should be listed as "Assignees" on the GitHub PR page. After assignment, the `in-review` label should be added.
|
||||
|
||||
3. To complete the initial PR evaluation and assignments in a timely manner: 1 week from submission.
|
||||
|
||||
4. To assist reviewers when they need help with their reviews (but also to stay out of the way when they don't).
|
||||
|
||||
5. To remind the reviewers about timely completion of their review.
|
||||
|
||||
6. To take a final look and complete the PR merge in *master*. The final look step is optional and shouldn't take more than 3 days.
|
||||
|
||||
7. The assignment of bugfixes should be expedited proportional to their importance, e.g. in some cases the editor can assign much shorter review window.
|
||||
|
||||
#### Responsibilities of Reviewers
|
||||
|
||||
Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their area of expertise.
|
||||
|
||||
**The responsibilities of the reviewers are:**
|
||||
|
||||
1. To let the editors know if the proposed assignment is not a good match for them.
|
||||
|
||||
2. To communicate with the PR author, provide feedback and work with them to resolve issues.
|
||||
|
||||
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
|
||||
|
||||
3. To seek help from the editors in case of difficulties.
|
||||
|
||||
4. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
|
||||
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
|
||||
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
|
||||
#### Responsibilities of Authors
|
||||
|
||||
Authors should clearly indicate when a PR is ready for review (before that the PR should be marked as `Draft` or `[WIP]`).
|
||||
|
||||
**The responsibilities of the authors are:**
|
||||
|
||||
1. To follow the instructions and PR checklist in the `CONTRIBUTING.md` document in the MFEM repository.
|
||||
|
||||
2. To respond to reviewer feedback in a timely manner.
|
||||
|
||||
3. Authors are encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
4. Authors can use the "Reviewers" section of the GitHub PR page to suggest reviewers, but the "Assignees" section will show who the editor has assigned to do the reviews.
|
||||
|
||||
5. To indicate when the PR is ready for review by adding the `ready-for-review` label.
|
||||
- Track the Travis CI and Appveyor [continuous integration](#automated-testing)
|
||||
builds at the end of the PR. These should run clean, so address any errors as
|
||||
soon as possible.
|
||||
|
||||
|
||||
### Pull Request Checklist
|
||||
@@ -497,18 +334,14 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Update `INSTALL`:
|
||||
- [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
|
||||
- [ ] Have the version ranges for any required or optional libraries changed?
|
||||
- [ ] Had a new optional library been added? (*Make sure the external library is licensed under LGPL, not GPL!*)
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update `.gitignore`:
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
- [ ] Check if `make distclean; git status` shows any files that are generated from the source but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
- [ ] New examples:
|
||||
- [ ] All sample runs at the top of the example source file work.
|
||||
- [ ] All sample runs at the top of the example work.
|
||||
- [ ] Update `examples/makefile`:
|
||||
- [ ] Add the example code to the appropriate `SEQ_EXAMPLES` and `PAR_EXAMPLES` variables.
|
||||
- [ ] Add any files generated by it to the `clean` target.
|
||||
@@ -517,14 +350,13 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add the example code to the `ALL_EXE_SRCS` variable.
|
||||
- [ ] Make sure `THIS_TEST_OPTIONS` is set correctly for the new example.
|
||||
- [ ] List the new example in `doc/CodeDocumentation.dox`.
|
||||
- [ ] If new examples directory (e.g.`examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add example-specific documentation, see e.g. the `src/examples.md`.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] In `examples.md`, list the example under the appropriate categories, add new categories if necessary.
|
||||
- [ ] Add a short description of the example in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New miniapps:
|
||||
- [ ] All sample runs at the top of the miniapp source file work.
|
||||
- [ ] All sample runs at the top of the miniapp work.
|
||||
- [ ] Update top-level `makefile` and `makefile` in corresponding miniapp directory.
|
||||
- [ ] Add the miniapp binary and any files generated by it to the top-level `.gitignore` file.
|
||||
- [ ] Update CMake build system:
|
||||
@@ -532,27 +364,27 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
|
||||
- [ ] Consider adding a new test for the new miniapp.
|
||||
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New capability:
|
||||
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
|
||||
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
|
||||
- [ ] Any new functions should include descriptions of their intended use e.g. for internal use only, user-facing, etc., along with references to example code whenever possible/appropriate.
|
||||
- [ ] All significant new classes, methods and functions have Doxygen-style documentation in source comments.
|
||||
- [ ] Consider adding new sample runs in existing examples to highlight the new capability.
|
||||
- [ ] Consider saving cool simulation pictures with the new capability in the Confluence gallery (LLNL only) or submitting them, via pull request, to the gallery section of the `mfem/web` repo.
|
||||
- [ ] If this is a major new feature, consider mentioning it in the short summary inside `README` *(rare)*.
|
||||
- [ ] If this is a major new feature, consider mentioning in the short summary inside `README` *(rare)*.
|
||||
- [ ] List major new classes in `doc/CodeDocumentation.dox` *(rare)*.
|
||||
- [ ] Update this checklist, if the new pull request affects it.
|
||||
- [ ] Run `make unittest` to make sure all unit tests pass.
|
||||
- [ ] Run the tests in `tests/scripts`.
|
||||
- [ ] Run the unit tests and make sure they all pass `make unittest`.
|
||||
- [ ] (LLNL only) Clone the `tests` repository and run the following tests, see `mfem/tests/README.md`:
|
||||
- [ ] `compilers`
|
||||
- [ ] `memcheck`
|
||||
- [ ] `documentation`
|
||||
- [ ] (LLNL only) After merging:
|
||||
- [ ] Update internal tests to include the new features.
|
||||
|
||||
- [ ] Regenerate `README.html` files from companion documentation pull requests.
|
||||
- [ ] Update the `baseline` and `compiler` tests, add new tests if necessary.
|
||||
- [ ] Consider updating the script `mfem/tests/sample-runs` (`sample-runs-serial` and `sample-runs-parallel`).
|
||||
|
||||
### Master/Next Workflow
|
||||
|
||||
@@ -611,7 +443,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
(replace `3.3.2` with current release):
|
||||
- Rename the current `next` branch to `next-pre-v3.3.2`.
|
||||
- Create a new `next` branch starting from the `v3.3.2` release.
|
||||
- Local copies of `next` can then be updated with `git fetch origin next && git checkout -B next origin/next`.
|
||||
- Local copies of `next` can then be updated with `git checkout -B next origin/next`.
|
||||
|
||||
### Release Checklist
|
||||
|
||||
@@ -620,14 +452,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] `makefile`
|
||||
- [ ] `CMakeLists.txt`
|
||||
- [ ] `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Check that version requirements for each of MFEM's dependencies are documented in `INSTALL` and up-to-date
|
||||
- [ ] Check that continuous integration server configurations reflect the dependency version requirements of the new release
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update the `CHANGELOG` to organize all release contributions
|
||||
- [ ] Review the whole source code once over
|
||||
- [ ] Ask MFEM-based applications to test the pre-release branch
|
||||
- [ ] Test on additional platforms and compilers
|
||||
- [ ] (LLNL only) Make sure all `README.html` files in the source repo are up to date.
|
||||
- [ ] Tag the repository:
|
||||
|
||||
```
|
||||
@@ -637,9 +462,9 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] Create the release tarball and push to `mfem/releases`.
|
||||
- [ ] Recreate the `next` branch as described in previous section.
|
||||
- [ ] Update and push documentation to `mfem/doxygen`.
|
||||
- [ ] Update URL shortlinks:
|
||||
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Update URL shorlinks:
|
||||
- [ ] Create a shortlink at [https://goo.gl/](https://goo.gl/) for the release tarball, e.g. http://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shorlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
|
||||
- [ ] Update website in `mfem/web` repo:
|
||||
- Update version and shortlinks in `src/index.md` and `src/download.md`.
|
||||
@@ -648,9 +473,6 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
|
||||
## LLNL Workflow
|
||||
|
||||
|
||||
### Mirroring on Bitbucket
|
||||
|
||||
- The GitHub `master` and `next` branches are mirrored to the LLNL institutional
|
||||
Bitbucket repository as `gh-master` and `gh-next`.
|
||||
|
||||
@@ -668,42 +490,22 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- `mfem:gh-next` -- Bleeding-edge development version, may be broken, use at
|
||||
your own risk.
|
||||
|
||||
|
||||
### Mirroring on GitLab
|
||||
|
||||
- MFEM repository is also mirrored on the LLNL GitLab instance, in a
|
||||
semi-automated manner.
|
||||
|
||||
- This instance is meant to complete CI testing with tests on Livermore
|
||||
Computing systems. GitLab pipeline status is reported in the corresponding
|
||||
GitHub pull request.
|
||||
|
||||
- In GitLab pipelines, TPLs (dependencies) are built using Spack, driven by Uberenv.
|
||||
|
||||
- No change to the MFEM repo can be made on this instance.
|
||||
|
||||
## Automated Testing
|
||||
|
||||
MFEM has several levels of automated testing running on GitHub, as well as on
|
||||
local Mac and Linux workstations, and Livermore Computing clusters at LLNL.
|
||||
|
||||
In addition, developers can set local git hooks to run some quick checks on
|
||||
commit or push, see the [README](config/githooks/README.md) in the `config/githooks`
|
||||
directory.
|
||||
|
||||
|
||||
### Linux and Mac smoke tests
|
||||
We use GitHub Actions to drive the default tests on the `master` and `next`
|
||||
branches. See the `.github/workflows` files and the logs at
|
||||
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
|
||||
We use Travis CI to drive the default tests on the `master` and `next`
|
||||
branches. See the `.travis` file and the logs at
|
||||
[https://travis-ci.org/mfem/mfem](https://travis-ci.org/mfem/mfem).
|
||||
|
||||
Testing using GitHub Actions should be kept lightweight, as there is a time
|
||||
Testing using Travis CI should be kept lightweight, as there is a 50 minute time
|
||||
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
|
||||
|
||||
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
|
||||
- Tests on the `next` branch are currently scheduled to run each night.
|
||||
|
||||
|
||||
### Windows smoke test
|
||||
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor` file and the
|
||||
@@ -713,17 +515,12 @@ build logs at
|
||||
CMake is used to generate the MSVC Project files and drive the build. A release
|
||||
and debug build is performed with a simple run of `ex1` to verify the executable.
|
||||
|
||||
|
||||
### Tests at LLNL
|
||||
At LLNL, we mirror the `master` and `next` branches internally (to `gh-master`
|
||||
and `gh-next`) and run longer nightly tests via cron. On the weekends, a more
|
||||
extensive test is run which extracts and executes all the different sample runs
|
||||
from each example.
|
||||
|
||||
- We mirror the `master` and `next` branches internally (to `gh-master` and
|
||||
`gh-next`) and run longer nightly tests via cron. On the weekends, a more
|
||||
extensive test is run which extracts and executes all the different sample
|
||||
runs from each example.
|
||||
|
||||
- We also mirror PRs on the LLNL GitLab instance. PR mirroring can only be
|
||||
triggered by _LLNL developers_, but test status is publicly available. Only
|
||||
_LLNL developers_ can access the detailed test report.
|
||||
|
||||
## Contact Information
|
||||
|
||||
|
||||
@@ -0,0 +1,64 @@
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
COPYRIGHT
|
||||
|
||||
The following copyright applies to each file in the MFEM distribution, unless
|
||||
otherwise stated in the file:
|
||||
|
||||
Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344 with
|
||||
the DOE.
|
||||
|
||||
Neither the United States Government nor Lawrence Livermore National Security,
|
||||
LLC nor any of their employees, makes any warranty, express or implied, or
|
||||
assumes any liability or responsibility for the accuracy, completeness, or
|
||||
usefulness of any information, apparatus, product, or process disclosed, or
|
||||
represents that its use would not infringe privately-owned rights.
|
||||
|
||||
Also, reference herein to any specific commercial products, process, or services
|
||||
by trade name, trademark, manufacturer or otherwise does not necessarily
|
||||
constitute or imply its endorsement, recommendation, or favoring by the United
|
||||
States Government or Lawrence Livermore National Security, LLC. The views and
|
||||
opinions of authors expressed herein do not necessarily state or reflect those
|
||||
of the United States Government or Lawrence Livermore National Security, LLC,
|
||||
and shall not be used for advertising or product endorsement purposes.
|
||||
|
||||
|
||||
LICENSE
|
||||
|
||||
MFEM is free software; you can redistribute it and/or modify it under the terms
|
||||
of the GNU Lesser General Public License (as published by the Free Software
|
||||
Foundation) version 2.1 dated February 1999, with the following EXCEPTIONS:
|
||||
|
||||
1. Subclasses of MFEM classes do not constitute a derivative work.
|
||||
|
||||
2. Static linking of applications to the MFEM library does not constitute a
|
||||
derivative work and does not require the author to provide source code for
|
||||
the application, use the shared MFEM library, or link their applications
|
||||
against a user-supplied version of MFEM.
|
||||
|
||||
MFEM is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||
WARRANTY; without even the IMPLIED WARRANTY OF MERCHANTABILITY or FITNESS FOR A
|
||||
PARTICULAR PURPOSE. See the terms and conditions of the GNU Lesser General
|
||||
Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public License along
|
||||
with this library (file LICENSE); if not, write to the Free Software Foundation,
|
||||
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
|
||||
|
||||
|
||||
CONTACT INFORMATION
|
||||
|
||||
The software is released under LLNL-CODE-443211. Please see
|
||||
|
||||
http://mfem.org
|
||||
|
||||
for more information and source code availability.
|
||||
@@ -5,7 +5,7 @@
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
http://mfem.org
|
||||
|
||||
The MFEM library has a serial and an MPI-based parallel version, which largely
|
||||
share the same code base. The only prerequisite for building the serial version
|
||||
@@ -19,26 +19,22 @@ requires an MPI C++ compiler, as well as the following external libraries:
|
||||
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
|
||||
The hypre dependency can be downloaded as a tarball from GitHub or from the
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.20.0 release
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.16.0 release
|
||||
of hypre is available at
|
||||
|
||||
https://github.com/hypre-space/hypre/archive/v2.20.0.tar.gz
|
||||
https://github.com/hypre-space/hypre/archive/v2.16.0.tar.gz
|
||||
|
||||
The METIS dependency can be disabled but that is not generally recommended, see
|
||||
the option MFEM_USE_METIS.
|
||||
|
||||
MFEM also includes support for devices such as GPUs, and programming models such
|
||||
as CUDA, HIP, OCCA, OpenMP and RAJA.
|
||||
as CUDA, OCCA, OpenMP and RAJA.
|
||||
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler. We recommend using
|
||||
a newer compiler, e.g. GCC version 4.9 or higher.
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler
|
||||
|
||||
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- HIP support requires an AMD GPU and an installation of the ROCm software stack
|
||||
https://rocm.github.io/ROCmInstall.html#installing-from-amd-rocm-repositories
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
|
||||
@@ -58,12 +54,11 @@ following package managers:
|
||||
|
||||
- Spack, https://github.com/spack/spack
|
||||
- OpenHPC, http://openhpc.community
|
||||
- Conda-forge, https://conda-forge.org (pre-built binaries linked with OpenMPI/MPICH, hypre, and METIS)
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
|
||||
|
||||
We also recommend downloading and building the MFEM-based GLVis visualization
|
||||
tool which can be used to visualize the meshes and solution in MFEM's examples
|
||||
and miniapps. See https://glvis.org and https://mfem.org/building.
|
||||
and miniapps. See http://glvis.org and http://mfem.org/building.
|
||||
|
||||
Quick start with GNU make
|
||||
=========================
|
||||
@@ -80,10 +75,6 @@ CUDA build:
|
||||
make cuda -j 4
|
||||
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_30')
|
||||
|
||||
HIP build:
|
||||
make hip -j 4
|
||||
(build for a specific AMD GPU chip: 'make hip -j 4 HIP_ARCH=gfx900')
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
cd examples
|
||||
make -j 4
|
||||
@@ -170,18 +161,14 @@ Note that re-configuration is only needed to change the currently configured
|
||||
options. Several shortcut targets combining (re-)configuration and compilation
|
||||
are also defined:
|
||||
|
||||
make serial -> Builds serial optimized version of the library
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
make cuda -> Builds serial cuda optimized version of the library
|
||||
make pcuda -> Builds parallel cuda optimized version of the library
|
||||
make cudebug -> Builds serial cuda debug version of the library
|
||||
make pcudebug -> Builds parallel cuda debug version of the library
|
||||
make hip -> Builds serial hip optimized version of the library
|
||||
make phip -> Builds parallel hip optimized version of the library
|
||||
make hipdebug -> Builds serial hip debug version of the library
|
||||
make phipdebug -> Builds parallel hip debug version of the library
|
||||
make serial -> Builds serial optimized version of the library
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
make cuda -> Builds serial cuda optimized version of the library
|
||||
make pcuda -> Builds parallel cuda optimized version of the library
|
||||
make cudebug -> Builds serial cuda debug version of the library
|
||||
make pcudebug -> Builds parallel cuda debug version of the library
|
||||
|
||||
Note that any of the above shortcuts accept configuration options, either at the
|
||||
command line or through a user configuration file.
|
||||
@@ -345,32 +332,12 @@ MFEM_USE_SUPERLU = YES/NO
|
||||
SuperLURowLocMatrix a distributed CSR matrix class needed by SuperLU. When
|
||||
enabled, this option uses the SUPERLU_* library options, see below.
|
||||
|
||||
MFEM_USE_SUPERLU5 = YES/NO
|
||||
If SuperLU functionality is enabled, use the older 5.1.0 version rather than
|
||||
the more recent 6+ versions.
|
||||
|
||||
MFEM_USE_MUMPS = YES/NO
|
||||
Enable MFEM functionality based on the MUMPS library. Currently, this
|
||||
option adds the class MUMPSSolver (a parallel sparse direct solver).
|
||||
When enabled, this option uses the MUMPS_* library options, see below.
|
||||
|
||||
MFEM_USE_STRUMPACK = YES/NO
|
||||
Enable MFEM functionality based on the STRUMPACK sparse direct solver and
|
||||
preconditioner through the STRUMPACKSolver and STRUMPACKRowLocMatrix
|
||||
classes. When enabled, this option uses the STRUMPACK_* library options, see
|
||||
below.
|
||||
|
||||
MFEM_USE_GINKGO = YES/NO
|
||||
Enable MFEM functionality based on the Ginkgo library, which provides
|
||||
iterative linear solvers and preconditioners with OpenMP, CUDA backends, see
|
||||
https://github.com/ginkgo-project/ginkgo. When enabled, the user can use
|
||||
Ginkgo's solvers and preconditioners as shown in examples/ginkgo/.
|
||||
|
||||
MFEM_USE_AMGX = YES/NO
|
||||
Enable MFEM functionality based on the AmgX multigrid library from NVIDIA.
|
||||
Allows the user to use SparseMatrices and HypreParMatrices to solve linear
|
||||
systems with the routines from the AmgX library.
|
||||
|
||||
MFEM_USE_GNUTLS = YES/NO
|
||||
Enable secure socket support in class socketstream, using the auxiliary
|
||||
GnuTLS_* classes, based on the GnuTLS library. This option may be useful in
|
||||
@@ -398,10 +365,6 @@ MFEM_USE_PETSC = YES/NO
|
||||
and other features based on the PETSc package. When enabled, this option uses
|
||||
the PETSC_* library options, see below.
|
||||
|
||||
MFEM_USE_SLEPC = YES/NO
|
||||
Enable MFEM eigensolvers based on the SLEPc package. When enabled, this
|
||||
option uses the SLEPC_* library options, see below.
|
||||
|
||||
MFEM_USE_MPFR = YES/NO
|
||||
MPFR is a library for multiple-precision floating-point computations. This
|
||||
option enables the use of MPFR in MFEM, e.g. for precise computation of 1D
|
||||
@@ -409,17 +372,11 @@ MFEM_USE_MPFR = YES/NO
|
||||
see below.
|
||||
|
||||
MFEM_USE_SIDRE = YES/NO
|
||||
Sidre is a component of LLNL's axom project, https://github.com/LLNL/axom,
|
||||
that provides an HDF5-based file format for visualization or restart
|
||||
capability following the Conduit (https://github.com/LLNL/conduit) mesh
|
||||
blueprint specification. When enabled, this option requires installation of
|
||||
HDF5 (see also MFEM_USE_NETCDF), Conduit and LLNL's axom project.
|
||||
|
||||
MFEM_USE_SIMD = YES/NO
|
||||
Enables the high performance templated classes to use architecture dependent
|
||||
SIMD intrinsics instead of the generic implementation of class AutoSIMD in
|
||||
linalg/simd/auto.hpp. This option should be combined with suitable
|
||||
compiler options, such as -march=native, to enable optimal vectorization.
|
||||
Sidre is a component of LLNL's axom project, http://goo.gl/cZyJdn, that
|
||||
provides an HDF5-based file format for visualization or restart capability
|
||||
following the Conduit (https://github.com/LLNL/conduit) mesh blueprint
|
||||
specification. When enabled, this option requires installation of HDF5 (see
|
||||
also MFEM_USE_NETCDF), Conduit and LLNL's axom project.
|
||||
|
||||
MFEM_USE_CONDUIT = YES/NO
|
||||
Enables support for converting MFEM Mesh and Grid Function objects to and
|
||||
@@ -428,15 +385,10 @@ MFEM_USE_CONDUIT = YES/NO
|
||||
an installation of Conduit. If Conduit was built with HDF5 support, it also
|
||||
requires an installation of HDF5 (see also MFEM_USE_NETCDF).
|
||||
|
||||
MFEM_USE_ADIOS2 = YES/NO
|
||||
Enables support for ADIOS2, version 2 of the adaptable input output system
|
||||
for scientific data management. In MFEM, ADIOS2 provides parallel I/O with
|
||||
ParaView visualization.
|
||||
|
||||
MFEM_USE_ZLIB = YES/NO
|
||||
MFEM_USE_GZSTREAM = YES/NO
|
||||
Enables use of on-the-fly gzip compressed streams. With this feature enabled
|
||||
(YES), MFEM can compress its output files on-the-fly. In addition, it can
|
||||
read back files compressed with zlib (or any compression utility capable
|
||||
read back files compressed with gzstream (or any compression utility capable
|
||||
of creating a gzip-compatible output such as gzip).
|
||||
MFEM will write compressed files if the mode argument in the constructor
|
||||
includes a 'z' character. With this feature disabled (NO), MFEM will not be
|
||||
@@ -451,43 +403,19 @@ MFEM_USE_PUMI = YES/NO
|
||||
data management system that is capable of handling general non-manifold
|
||||
models and effectively supports automated adaptive analysis. PUMI enables
|
||||
support for parallel unstructured mesh modifications in MFEM.
|
||||
The develop branch of PUMI repository (https://github.com/SCOREC/core)
|
||||
should be used for most updated features.
|
||||
|
||||
MFEM_USE_UMPIRE = YES/NO
|
||||
Enables support for Umpire, a resource management library that allows the
|
||||
discovery, provision, and management of memory on machines with multiple
|
||||
memory devices like NUMA and GPUs.
|
||||
|
||||
MFEM_USE_BENCHMARK = YES/NO
|
||||
Enables support for Google Benchmark, a library to support the benchmarking
|
||||
of functions, in the tests/benchmarks directory.
|
||||
|
||||
MFEM_USE_HIOP = YES/NO
|
||||
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
|
||||
HPC solver for nonlinear optimization problems.
|
||||
|
||||
MFEM_USE_CODIPACK = YES/NO
|
||||
Enable automatic differentiation using the CoDiPack library.
|
||||
www.scicomp.uni-kl.de/codi/
|
||||
|
||||
MFEM_USE_ADFORWARD = YES/NO
|
||||
Enable forward mode for AD packages. This option is valid
|
||||
only if the AD package supports two modes (backward/forward).
|
||||
MFEM_USE_MM = YES/NO
|
||||
Enables support for the MFEM's memory manager (MM), which is required to
|
||||
support devices with different memory spaces. This option is required when
|
||||
CUDA support is enabled, i.e. when MFEM_USE_CUDA=YES.
|
||||
|
||||
MFEM_USE_CUDA = YES/NO
|
||||
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
|
||||
platform and programming model for general computing on graphical processing
|
||||
units (GPUs). The variable CUDA_ARCH is used to specify the CUDA compute
|
||||
capability used during compilation (by default, CUDA_ARCH=sm_60). When
|
||||
enabled, this option uses the CUDA_* build options, see below.
|
||||
|
||||
MFEM_USE_HIP = YES/NO
|
||||
Enables support for AMD devices in MFEM. HIP is a heterogeneous-compute
|
||||
interface for portability developed by AMD that can target both AMD and
|
||||
NVIDIA GPUs. The variable HIP_ARCH is used to specify the AMD GPU processor
|
||||
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
|
||||
option uses the HIP_* build options, see below.
|
||||
units (GPUs). This option requires MFEM_USE_MM. The variable CUDA_ARCH is
|
||||
used to specify the CUDA compute capability used during compilation (by
|
||||
default, CUDA_ARCH=sm_60). When enabled, this option uses the CUDA_* build
|
||||
options, see below.
|
||||
|
||||
MFEM_USE_RAJA = YES/NO
|
||||
Enable support for the RAJA performance portability layer in MFEM. RAJA
|
||||
@@ -502,44 +430,6 @@ MFEM_USE_OCCA = YES/NO
|
||||
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
|
||||
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_USE_GSLIB = YES/NO
|
||||
Enables MFEM functionality based on the GSLIB library, and specifically its
|
||||
FindPoints component, which provides a robust algorithms to evaluate finite
|
||||
element functions in a collection of points in physical space. When enabled,
|
||||
the user can use the GSLIB-FindPoints methods as shown in miniapps/gslib.
|
||||
|
||||
MFEM_USE_CEED = YES/NO
|
||||
Enables support for the libCEED library in MFEM. libCEED is a portable
|
||||
library for performant high-order operator evaluation developed by the Center
|
||||
for Efficient Exascale Discretizations in the Exascale Computing Project.
|
||||
|
||||
MFEM_USE_MKL_CPARDISO = YES/NO
|
||||
Enables the interface to MKL CPardiso: the Intel MKL Parallel Direct Sparse
|
||||
Solver for Clusters. Make sure to set the correct values for MKL_MPI_WRAPPER
|
||||
and MKL_LIBRARY_SUBDIR as shown in defaults.mk. If you configure MFEM with
|
||||
MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
|
||||
OpenMP capabilities are disabled at link time.
|
||||
|
||||
MFEM_USE_CALIPER = YES/NO
|
||||
Enables the interface to Caliper. Caliper is a library to integrate
|
||||
performance profiling capabilities into applications. To use Caliper,
|
||||
developers mark code regions of interest using either Caliper's annotation
|
||||
API or their equivalent in MFEM. Applications can then enable performance
|
||||
profiling at runtime with Caliper's configuration API. Alternatively, one
|
||||
can configure Caliper through environment variables or config files.
|
||||
|
||||
MFEM_USE_FMS = YES/NO
|
||||
Enables support for the FMS library which consists of the DataCollection
|
||||
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
|
||||
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
|
||||
convetion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
DataCollection class, see the header file fem/fmsconvert.hpp.
|
||||
|
||||
MFEM_USE_PARELAG = YES/NO
|
||||
Enables the miniapps that use the ParELAG library. MFEM does not currently
|
||||
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_BUILD_TAG = (any value)
|
||||
An optional tag to characterize the build. Exported to config/config.mk.
|
||||
Can be used to identify the MFEM build from other makefiles.
|
||||
@@ -561,18 +451,13 @@ directory and use the string @MFEM_DIR@, e.g. HYPRE_OPT = -I@MFEM_DIR@/../hypre.
|
||||
The specific libraries and their options are:
|
||||
|
||||
- HYPRE, required for the parallel build, i.e. when MFEM_USE_MPI = YES.
|
||||
See also the "Specific options for hypre" section at the end of this file.
|
||||
URL: https://github.com/hypre-space/hypre and https://www.llnl.gov/casc/hypre
|
||||
Options: HYPRE_OPT, HYPRE_LIB.
|
||||
Versions: HYPRE >= 2.10.0b (HYPRE built without CUDA)
|
||||
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
|
||||
HYPRE >= 2.22.1 (HYPRE built with CUDA)
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
|
||||
- LAPACK (optional), used when MFEM_USE_LAPACK = YES. Alternative, optimized
|
||||
implementations can also be used, e.g. the ATLAS project.
|
||||
@@ -591,39 +476,25 @@ The specific libraries and their options are:
|
||||
- SUNDIALS (optional), used when MFEM_USE_SUNDIALS = YES.
|
||||
Beginning with MFEM v3.3, SUNDIALS v2.7.0 is supported.
|
||||
Beginning with MFEM v3.3.2, SUNDIALS v3.0.0 is also supported.
|
||||
Beginning with MFEM v4.1, only SUNDIALS v5.0.0+ is supported.
|
||||
When MFEM_USE_CUDA is enabled, only SUNDIALS v5.4.0+ is supported.
|
||||
If MFEM_USE_MPI is enabled, we expect that SUNDIALS is built with support for
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
|
||||
|
||||
- Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
|
||||
URL: http://trilinos.org/oldsite/packages/mesquite
|
||||
Options: MESQUITE_OPT, MESQUITE_LIB.
|
||||
The Mesquite support is deprecated and will be removed in the future.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
Options: SUITESPARSE_OPT, SUITESPARSE_LIB.
|
||||
Versions: SuiteSparse >= 4.5.4, older versions may work too.
|
||||
|
||||
- SuperLU_DIST (optional), used when MFEM_USE_SUPERLU = YES. Note that
|
||||
SuperLU_DIST requires ParMETIS, which includes METIS 5 in its distribution.
|
||||
Both ParMETIS and the included METIS 5 should be built and installed in the
|
||||
same location. If using SuperLU_Dist v5, set MFEM_USE_SUPERLU5=YES.
|
||||
same location.
|
||||
URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU
|
||||
Options: SUPERLU_OPT, SUPERLU_LIB.
|
||||
Versions: SuperLU_DIST >= 5.1.0.
|
||||
|
||||
- MUMPS (optional), used when MFEM_USE_MUMPS = YES. Note that MUMPS
|
||||
requires LAPACK, SCALAPACK and a reordering package such as PORD or METIS.
|
||||
URL: http://mumps.enseeiht.fr
|
||||
Options: MUMPS_OPT, MUMPS_LIB.
|
||||
Versions: MUMPS >= 5.1.1
|
||||
|
||||
- STRUMPACK (optional), used when MFEM_USE_STRUMPACK = YES. Note that STRUMPACK
|
||||
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
|
||||
@@ -633,26 +504,12 @@ The specific libraries and their options are:
|
||||
2.0.0 or later.
|
||||
URL: http://portal.nersc.gov/project/sparse/strumpack
|
||||
Options: STRUMPACK_OPT, STRUMPACK_LIB.
|
||||
Versions: STRUMPACK >= 3.0.0.
|
||||
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
|
||||
C++ compiler that supports the C++-14 standard. For additional requirements
|
||||
and dependencies of specific modules, see the Ginkgo webpage below.
|
||||
URL: https://ginkgo-project.github.io
|
||||
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or Debug).
|
||||
Versions: Ginkgo >= 1.4.0.
|
||||
|
||||
- AmgX (optional), used when MFEM_USE_AMGX = YES.
|
||||
URL: https://github.com/NVIDIA/AMGX
|
||||
Options: AMGX_OPT, AMGX_LIB.
|
||||
Versions: AmgX >= 2.1, older versions may work too.
|
||||
|
||||
- GnuTLS (optional), used when MFEM_USE_GNUTLS = YES. On most Linux systems,
|
||||
GnuTLS is available as a development package, e.g. gnutls-devel. On Mac OS X,
|
||||
one can get the library through the Homebrew package manager (http://brew.sh).
|
||||
URL: http://gnutls.org
|
||||
Options: GNUTLS_OPT, GNUTLS_LIB.
|
||||
Versions: GnuTLS >= 2.12.0, older versions may work too.
|
||||
|
||||
- NetCDF (optional), used when MFEM_USE_NETCDF = YES, required for reading Cubit
|
||||
mesh files. Also requires installation of HDF5 and ZLIB, as explained at the
|
||||
@@ -660,7 +517,6 @@ The specific libraries and their options are:
|
||||
don't need the C++ or parallel versions.
|
||||
URL: www.unidata.ucar.edu/software/netcdf
|
||||
Options: NETCDF_OPT, NETCDF_LIB.
|
||||
Versions: NetCDF >= 4.4.0.
|
||||
|
||||
- PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.8 or higher of
|
||||
the PETSC dev branch is required. The MFEM and PETSc builds can share common
|
||||
@@ -672,106 +528,34 @@ The specific libraries and their options are:
|
||||
--with-shared-libraries=0
|
||||
URL: https://www.mcs.anl.gov/petsc
|
||||
Options: PETSC_OPT, PETSC_LIB.
|
||||
Versions: PETSc >= 3.8.0 (PETSc build without CUDA)
|
||||
PETSc >= 3.15.0 (PETSc built with CUDA)
|
||||
|
||||
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
|
||||
uses some of the PETSc options when compiled.
|
||||
URL: https://slepc.upv.es/
|
||||
Options: SLEPC_OPT, SLEPC_LIB.
|
||||
Versions: SLEPc >= 3.8.0.
|
||||
|
||||
- Sidre (optional), part of LLNL's axom project, used when MFEM_USE_SIDRE = YES.
|
||||
Starting with MFEM v4.1, Axom version 0.3.1 or later is required.
|
||||
URL: https://github.com/LLNL/axom
|
||||
URL: http://goo.gl/cZyJdn (axom, to be released)
|
||||
https://github.com/LLNL/conduit (Conduit)
|
||||
https://support.hdfgroup.org/HDF5 (HDF5)
|
||||
Options: SIDRE_OPT, SIDRE_LIB.
|
||||
Versions: Axom >= 0.3.1.
|
||||
|
||||
- Conduit (optional), used when MFEM_USE_CONDUIT = YES. Conduit Mesh Blueprint
|
||||
- Conduit, used when MFEM_USE_CONDUIT = YES. Direct Conduit Mesh Blueprint
|
||||
support requires Conduit >= v0.3.1 and VisIt >= v2.13.1 to read the output.
|
||||
URL: https://github.com/LLNL/conduit (Conduit)
|
||||
https://support.hdfgroup.org/HDF5 (HDF5)
|
||||
Options: CONDUIT_OPT, CONDUIT_LIB.
|
||||
Versions: Conduit >= 0.3.1.
|
||||
|
||||
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
|
||||
URL: https://adios2.readthedocs.io/
|
||||
Versions: ADIOS >= 2.5.0.
|
||||
|
||||
- PUMI (optional), used when MFEM_USE_PUMI = YES.
|
||||
- PUMI, used when MFEM_USE_PUMI = YES.
|
||||
URL: https://scorec.rpi.edu/pumi
|
||||
https://github.com/SCOREC/core
|
||||
Options: PUMI_OPT, PUMI_LIB.
|
||||
Versions: PUMI == 2.2.3.
|
||||
|
||||
- HiOp (optional), used when MFEM_USE_HIOP = YES.
|
||||
URL: https://github.com/LLNL/hiop
|
||||
Options: HIOP_OPT, HIOP_LIB.
|
||||
Versions: HIOP >= 0.4.6.
|
||||
|
||||
- CoDiPack (optiobal), used with MFEM_USE_CODIPACK = YES
|
||||
URL: https://www.scicomp.uni-kl.de/codi/
|
||||
Options: CODIPACK_OPT
|
||||
Versions: 1.9.3
|
||||
|
||||
- GSLIB (optional), used when MFEM_USE_GSLIB = YES. The gslib library must be
|
||||
built prior to the MFEM build, as follows: download gslib-1.0.7, untar it at
|
||||
the same level as MFEM and create a symbolic link: "ln -s gslib-1.0.7 gslib".
|
||||
Build gslib in parallel or in serial based on the desired MFEM build: "make
|
||||
clean; make CC=mpicc" or "make clean; make CC=gcc MPI=0". Build MFEM with
|
||||
MFEM_USE_GSLIB=YES.
|
||||
URL: https://github.com/gslib/gslib/archive/v1.0.7.tar.gz
|
||||
Options: GSLIB_OPT, GSLIB_LIB.
|
||||
Versions: GSLIB >= 1.0.7.
|
||||
|
||||
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
|
||||
URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
|
||||
Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
|
||||
Versions: Intel MKL >= 2020.
|
||||
|
||||
- CUDA (optional), used when MFEM_USE_CUDA = YES.
|
||||
- CUDA, used when MFEM_USE_CUDA = YES.
|
||||
URL: https://developer.nvidia.com/cuda-toolkit
|
||||
Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
|
||||
Versions: CUDA >= 10.1.168.
|
||||
|
||||
- HIP (optional), used when MFEM_USE_HIP = YES.
|
||||
URL: https://rocm.github.io/ROCmInstall.html
|
||||
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
|
||||
|
||||
- OCCA (optional), used when MFEM_USE_OCCA = YES.
|
||||
- OCCA, used when MFEM_USE_OCCA = YES.
|
||||
URL: https://libocca.org
|
||||
Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
|
||||
Versions: OCCA >= 1.1.0.
|
||||
|
||||
- libCEED (optional), used when MFEM_USE_CEED = YES.
|
||||
URL: https://github.com/CEED/libCEED
|
||||
https://ceed.exascaleproject.org/libceed
|
||||
Options: CEED_DIR, CEED_OPT, CEED_LIB.
|
||||
Versions: libCEED >= 0.8.
|
||||
|
||||
- RAJA (optional), used when MFEM_USE_RAJA = YES.
|
||||
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
|
||||
- RAJA, used when MFEM_USE_RAJA = YES.
|
||||
URL: https://github.com/LLNL/RAJA
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 0.14.0.
|
||||
|
||||
- Caliper (optional), used when MFEM_USE_CALIPER = YES.
|
||||
URL: https://github.com/LLNL/Caliper
|
||||
Options: CALIPER_DIR
|
||||
Versions: CALIPER >= 2.5.0, older versions may work too.
|
||||
|
||||
- Umpire, used when MFEM_USE_UMPIRE = YES.
|
||||
Umpire requires camp when the Umpire version is >= 3.0.0.
|
||||
URL: https://github.com/LLNL/Umpire
|
||||
Options: UMPIRE_DIR, UMPIRE_OPT, UMPIRE_LIB.
|
||||
Versions: Umpire >= 3.0.0.
|
||||
|
||||
- Benchmark, used when MFEM_USE_BENCHMARK = YES.
|
||||
URL: https://github.com/google/benchmark
|
||||
Options: BENCHMARK_DIR, BENCHMARK_LIB.
|
||||
Versions: Benchmark >= 1.5.6.
|
||||
|
||||
- MPFR (optional), used when MFEM_USE_MPFR = YES.
|
||||
URL: http://mpfr.org, it depends on the GMP library: https://gmplib.org
|
||||
@@ -783,19 +567,11 @@ The specific libraries and their options are:
|
||||
URL: http://www.nongnu.org/libunwind
|
||||
Options: LIBUNWIND_OPT, LIBUNWIND_LIB.
|
||||
|
||||
- ZLIB (optional), used when MFEM_USE_ZLIB = YES, or when MFEM_USE_NETCDF =
|
||||
- ZLIB (optional), used when MFEM_USE_GZSTREAM = YES, or when MFEM_USE_NETCDF =
|
||||
YES (in the default settings for NETCDF_OPT and NETCDF_LIB).
|
||||
URL: https://zlib.net
|
||||
Options: ZLIB_OPT, ZLIB_LIB.
|
||||
|
||||
- FMS (optional), used when MFEM_USE_FMS = YES.
|
||||
URL: https://github.com/CEED/FMS
|
||||
Options: FMS_OPT, FMS_LIB.
|
||||
Versions: FMS >= 0.2.
|
||||
|
||||
- ParELAG, used when MFEM_USE_PARELAG = YES.
|
||||
URL: https://github.com/LLNL/parelag
|
||||
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
|
||||
|
||||
Building with CMake
|
||||
===================
|
||||
@@ -911,28 +687,16 @@ MFEM_TIMER_TYPE - Set automatically, can be overwritten.
|
||||
MFEM_USE_MESQUITE
|
||||
MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU
|
||||
MFEM_USE_MUMPS
|
||||
MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO
|
||||
MFEM_USE_AMGX
|
||||
MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF
|
||||
MFEM_USE_MPFR
|
||||
MFEM_USE_ZLIB
|
||||
MFEM_USE_GZSTREAM
|
||||
MFEM_USE_PUMI
|
||||
MFEM_USE_HIOP
|
||||
MFEM_USE_CODIPACK
|
||||
MFEM_USE_ADFORWARD
|
||||
MFEM_USE_CUDA
|
||||
MFEM_USE_OCCA
|
||||
MFEM_USE_CEED
|
||||
MFEM_USE_RAJA
|
||||
MFEM_USE_UMPIRE
|
||||
MFEM_USE_SIDRE
|
||||
MFEM_USE_CALIPER
|
||||
MFEM_USE_FMS
|
||||
MFEM_USE_BENCHMARK
|
||||
MFEM_USE_PARELAG
|
||||
MFEM_USE_MM
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -969,28 +733,18 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
|
||||
- HYPRE
|
||||
- METIS - The option MFEM_USE_METIS_5 is auto-detected.
|
||||
- ParMETIS
|
||||
- MESQUITE
|
||||
- SuiteSparse
|
||||
- SuperLUDist, STRUMPACK
|
||||
- Ginkgo
|
||||
- AMGX
|
||||
- ParMETIS
|
||||
- GNUTLS - Extends the built-in CMake support, to search GNUTLS_DIR as well.
|
||||
- NETCDF
|
||||
- MPFR
|
||||
- LIBUNWIND
|
||||
- POSIXCLOCKS
|
||||
- PUMI
|
||||
- HIOP
|
||||
- CoDiPack
|
||||
- OCCA
|
||||
- RAJA
|
||||
- UMPIRE
|
||||
- AXOM - Used when MFEM_USE_SIDRE is enabled
|
||||
- CALIPER
|
||||
- FMS
|
||||
- BENCHMARK
|
||||
- ParELAG
|
||||
|
||||
The following built-in CMake packages are also used:
|
||||
|
||||
@@ -1008,7 +762,7 @@ config/config.hpp.in:
|
||||
|
||||
cp config/config.hpp.in config/_config.hpp
|
||||
|
||||
The file config/_config.hpp can then be edited to enable desired options. The
|
||||
The file config/_config.hpp can then be edited to enable desired options. The
|
||||
MFEM library is simply a combination of all object files obtained by compiling
|
||||
the .cpp source files in the source directories: general, linalg, mesh, and fem.
|
||||
|
||||
@@ -1016,7 +770,7 @@ the .cpp source files in the source directories: general, linalg, mesh, and fem.
|
||||
Specifying an MPI job launcher
|
||||
==============================
|
||||
By default, MFEM will use 'mpirun -np #' to launch any of its parallel tests or
|
||||
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
|
||||
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
|
||||
provided by setting the MFEM_MPIEXEC and MFEM_MPIEXEC_NP config variables.
|
||||
|
||||
MFEM will expect the launcher command, plus the command line option to allow it
|
||||
@@ -1026,19 +780,3 @@ MFEM_MPIEXEC = mpirun # default
|
||||
MFEM_MPIEXEC_NP = -np # default
|
||||
MFEM_MPIEXEC = srun # example for platforms using SLURM
|
||||
MFEM_MPIEXEC_NP = -n # example for platforms using SLURM
|
||||
|
||||
|
||||
Specific options for hypre
|
||||
==========================
|
||||
The hypre library has multiple options to define local and global index storage
|
||||
sizes. By default, all indices are stored as an architecture aware integer. For
|
||||
most platforms, this will be 32-bit. This limits the maximum number of global
|
||||
degrees of freedom in a vector or matrix to about 2 billion. In order to solve
|
||||
larger problems, there are two options:
|
||||
|
||||
1. Building hypre with '--enable-bigint' defines the local and global indices to
|
||||
be 64-bit. This is convenient, but requires more memory than necessary.
|
||||
|
||||
2. Building hypre with '--enable-mixedint' defines the local indiced to be
|
||||
32-bit, while using a 64-bit storage for global indices. This option is
|
||||
currently tested only in ex1p, and may not work in more general settings.
|
||||
|
||||
@@ -1,29 +1,504 @@
|
||||
BSD 3-Clause License
|
||||
GNU LESSER GENERAL PUBLIC LICENSE
|
||||
Version 2.1, February 1999
|
||||
|
||||
Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC
|
||||
All rights reserved.
|
||||
Copyright (C) 1991, 1999 Free Software Foundation, Inc.
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
|
||||
Everyone is permitted to copy and distribute verbatim copies
|
||||
of this license document, but changing it is not allowed.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
modification, are permitted provided that the following conditions are met:
|
||||
[This is the first released version of the Lesser GPL. It also counts
|
||||
as the successor of the GNU Library Public License, version 2, hence
|
||||
the version number 2.1.]
|
||||
|
||||
* Redistributions of source code must retain the above copyright notice, this
|
||||
list of conditions and the following disclaimer.
|
||||
Preamble
|
||||
|
||||
* Redistributions in binary form must reproduce the above copyright notice,
|
||||
this list of conditions and the following disclaimer in the documentation
|
||||
and/or other materials provided with the distribution.
|
||||
The licenses for most software are designed to take away your
|
||||
freedom to share and change it. By contrast, the GNU General Public
|
||||
Licenses are intended to guarantee your freedom to share and change
|
||||
free software--to make sure the software is free for all its users.
|
||||
|
||||
* Neither the name of the copyright holder nor the names of its
|
||||
contributors may be used to endorse or promote products derived from
|
||||
this software without specific prior written permission.
|
||||
This license, the Lesser General Public License, applies to some
|
||||
specially designated software packages--typically libraries--of the
|
||||
Free Software Foundation and other authors who decide to use it. You
|
||||
can use it too, but we suggest you first think carefully about whether
|
||||
this license or the ordinary General Public License is the better
|
||||
strategy to use in any particular case, based on the explanations below.
|
||||
|
||||
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
|
||||
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
|
||||
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
|
||||
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
|
||||
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
|
||||
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
|
||||
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
|
||||
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
|
||||
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
|
||||
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
When we speak of free software, we are referring to freedom of use,
|
||||
not price. Our General Public Licenses are designed to make sure that
|
||||
you have the freedom to distribute copies of free software (and charge
|
||||
for this service if you wish); that you receive source code or can get
|
||||
it if you want it; that you can change the software and use pieces of
|
||||
it in new free programs; and that you are informed that you can do
|
||||
these things.
|
||||
|
||||
To protect your rights, we need to make restrictions that forbid
|
||||
distributors to deny you these rights or to ask you to surrender these
|
||||
rights. These restrictions translate to certain responsibilities for
|
||||
you if you distribute copies of the library or if you modify it.
|
||||
|
||||
For example, if you distribute copies of the library, whether gratis
|
||||
or for a fee, you must give the recipients all the rights that we gave
|
||||
you. You must make sure that they, too, receive or can get the source
|
||||
code. If you link other code with the library, you must provide
|
||||
complete object files to the recipients, so that they can relink them
|
||||
with the library after making changes to the library and recompiling
|
||||
it. And you must show them these terms so they know their rights.
|
||||
|
||||
We protect your rights with a two-step method: (1) we copyright the
|
||||
library, and (2) we offer you this license, which gives you legal
|
||||
permission to copy, distribute and/or modify the library.
|
||||
|
||||
To protect each distributor, we want to make it very clear that
|
||||
there is no warranty for the free library. Also, if the library is
|
||||
modified by someone else and passed on, the recipients should know
|
||||
that what they have is not the original version, so that the original
|
||||
author's reputation will not be affected by problems that might be
|
||||
introduced by others.
|
||||
|
||||
Finally, software patents pose a constant threat to the existence of
|
||||
any free program. We wish to make sure that a company cannot
|
||||
effectively restrict the users of a free program by obtaining a
|
||||
restrictive license from a patent holder. Therefore, we insist that
|
||||
any patent license obtained for a version of the library must be
|
||||
consistent with the full freedom of use specified in this license.
|
||||
|
||||
Most GNU software, including some libraries, is covered by the
|
||||
ordinary GNU General Public License. This license, the GNU Lesser
|
||||
General Public License, applies to certain designated libraries, and
|
||||
is quite different from the ordinary General Public License. We use
|
||||
this license for certain libraries in order to permit linking those
|
||||
libraries into non-free programs.
|
||||
|
||||
When a program is linked with a library, whether statically or using
|
||||
a shared library, the combination of the two is legally speaking a
|
||||
combined work, a derivative of the original library. The ordinary
|
||||
General Public License therefore permits such linking only if the
|
||||
entire combination fits its criteria of freedom. The Lesser General
|
||||
Public License permits more lax criteria for linking other code with
|
||||
the library.
|
||||
|
||||
We call this license the "Lesser" General Public License because it
|
||||
does Less to protect the user's freedom than the ordinary General
|
||||
Public License. It also provides other free software developers Less
|
||||
of an advantage over competing non-free programs. These disadvantages
|
||||
are the reason we use the ordinary General Public License for many
|
||||
libraries. However, the Lesser license provides advantages in certain
|
||||
special circumstances.
|
||||
|
||||
For example, on rare occasions, there may be a special need to
|
||||
encourage the widest possible use of a certain library, so that it becomes
|
||||
a de-facto standard. To achieve this, non-free programs must be
|
||||
allowed to use the library. A more frequent case is that a free
|
||||
library does the same job as widely used non-free libraries. In this
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How to Apply These Terms to Your New Libraries
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Yoyodyne, Inc., hereby disclaims all copyright interest in the
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|
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Hacker.
|
||||
|
||||
<signature of Ty Coon>, 1 April 1990
|
||||
Ty Coon, President of Vice
|
||||
|
||||
That's all there is to it!
|
||||
|
||||
@@ -1,33 +0,0 @@
|
||||
This work was produced under the auspices of the U.S. Department of Energy by
|
||||
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This work was prepared as an account of work sponsored by an agency of
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||||
|
||||
The views and opinions of authors expressed herein do not necessarily
|
||||
state or reflect those of the United States Government or Lawrence
|
||||
Livermore National Security, LLC, and shall not be used for advertising
|
||||
or product endorsement purposes.
|
||||
|
||||
Inclusion of external software:
|
||||
|
||||
This project distributes the sources of several external software products with
|
||||
their own respective licenses which can be found in their code and attached
|
||||
license files. These software products and their licenses are as follows:
|
||||
|
||||
* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
|
||||
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
|
||||
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
|
||||
* Picojson (fem/picojson.h) -- Custom 2-clause license
|
||||
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
|
||||
* Zstr (general/zstr.hpp) -- MIT license
|
||||
@@ -5,7 +5,7 @@
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
http://mfem.org
|
||||
|
||||
MFEM is a modular parallel C++ library for finite element methods. Its goal is
|
||||
to enable high-performance scalable finite element discretization research and
|
||||
@@ -14,10 +14,10 @@ supercomputers.
|
||||
|
||||
* For building instructions, see the file INSTALL, or type "make help".
|
||||
|
||||
* Copyright and licensing information can be found in files LICENSE and NOTICE.
|
||||
* Copyright and licensing information can be found in the file COPYRIGHT.
|
||||
|
||||
* The best starting point for new users interested in MFEM's features is to
|
||||
review the examples and miniapps at https://mfem.org/examples.
|
||||
* The best starting point for new users interested in MFEM's features is the
|
||||
interactive documentation in examples/README.html.
|
||||
|
||||
* Developers interested in contributing to the library, should read the
|
||||
instructions and documentation in the CONTRIBUTING.md file.
|
||||
@@ -49,21 +49,20 @@ library. Nonlinear solvers (the Newton method), eigensolvers (LOBPCG), and
|
||||
several explicit and implicit Runge-Kutta time integrators are also available.
|
||||
|
||||
MFEM supports MPI-based parallelism throughout the library, and can readily be
|
||||
used as a scalable unstructured finite element problem generator. Starting with
|
||||
version 4.0, MFEM offers support for GPU acceleration, and programming models,
|
||||
such as CUDA, HIP, OCCA, RAJA and OpenMP. MFEM-based applications require
|
||||
minimal changes to switch from a serial to a highly-performant MPI-parallel
|
||||
version of the code, where they can take advantage of the integrated linear
|
||||
solvers from the hypre library. Comprehensive support for other external
|
||||
packages, e.g. PETSc, SUNDIALS and libCEED is also included, giving access to
|
||||
additional linear and nonlinear solvers, preconditioners, time integrators, etc.
|
||||
used as a scalable unstructured finite element problem generator. As of version
|
||||
4.0, MFEM offers initial support for GPU acceleration, and programming models,
|
||||
such as CUDA, OCCA, RAJA and OpenMP. MFEM-based applications require minimal
|
||||
changes to switch from a serial to a high-performing MPI-parallel version of the
|
||||
code, where they can take advantage of the integrated linear solvers from the
|
||||
hypre library. Comprehensive support for other external packages, e.g. PETSc
|
||||
and SUNDIALS is also included, giving access to many additional linear and
|
||||
nonlinear solvers, preconditioners, time integrators, etc.
|
||||
|
||||
For examples of using MFEM, see the examples/ and miniapps/ directories, as well
|
||||
as the OpenGL visualization tool GLVis which is available at https://glvis.org.
|
||||
as the OpenGL visualization tool GLVis which is available at http://glvis.org.
|
||||
|
||||
MFEM is distributed under the terms of the BSD-3 license. All new contributions
|
||||
must be made under this license. See LICENSE and NOTICE for details.
|
||||
This project is released under the LGPL v2.1 license with static linking
|
||||
exception. See files COPYRIGHT and LICENSE file for full details.
|
||||
|
||||
SPDX-License-Identifier: BSD-3-Clause
|
||||
LLNL Release Number: LLNL-CODE-806117
|
||||
LLNL Release Number: LLNL-CODE-443211
|
||||
DOI: 10.11578/dc.20171025.1248
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
set(HDRS
|
||||
config.hpp
|
||||
|
||||
@@ -196,8 +196,8 @@ IF (DEFINED TPL_ENABLE_METIS)
|
||||
SET(MFEM_USE_METIS ${TPL_ENABLE_METIS} CACHE BOOL "Enable METIS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_ZLIB)
|
||||
SET(MFEM_USE_ZLIB ${TPL_ENABLE_ZLIB} CACHE BOOL "Enable zlib for compressed data streams." FORCE)
|
||||
IF (DEFINED TPL_ENABLE_GZSTREAM)
|
||||
SET(MFEM_USE_GZSTREAM ${TPL_ENABLE_GZSTREAM} CACHE BOOL "Enable gzstream for compressed data streams." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_LIBUNWIND)
|
||||
@@ -228,8 +228,8 @@ IF (DEFINED TPL_ENABLE_STRUMPACK)
|
||||
SET(MFEM_USE_STRUMPACK ${TPL_ENABLE_STRUMPACK} CACHE BOOL "Enable STRUMPACK usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_GINKGO)
|
||||
SET(MFEM_USE_GINKGO ${TPL_ENABLE_GINKGO} CACHE BOOL "Enable GINKGO usage" FORCE)
|
||||
IF (DEFINED TPL_ENABLE_GECKO)
|
||||
SET(MFEM_USE_GECKO ${TPL_ENABLE_GECKO} CACHE BOOL "Enable GECKO usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_GNUTLS)
|
||||
@@ -244,10 +244,6 @@ IF (DEFINED TPL_ENABLE_PETSC)
|
||||
SET(MFEM_USE_PETSC ${TPL_ENABLE_PETSC} CACHE BOOL "Enable PETSc support." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SLEPC)
|
||||
SET(MFEM_USE_SLEPC ${TPL_ENABLE_SLEPC} CACHE BOOL "Enable SLEPc support." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MPFR)
|
||||
SET(MFEM_USE_MPFR ${TPL_ENABLE_MPFR} CACHE BOOL "Enable MPFR usage." FORCE)
|
||||
ENDIF()
|
||||
@@ -256,10 +252,6 @@ IF (DEFINED TPL_ENABLE_SIDRE)
|
||||
SET(MFEM_USE_SIDRE ${TPL_ENABLE_SIDRE} CACHE BOOL "Enable Axom/Sidre usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_FMS)
|
||||
SET(MFEM_USE_FMS ${TPL_ENABLE_FMS} CACHE BOOL "Enable FMS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_CONDUIT)
|
||||
SET(MFEM_USE_CONDUIT ${TPL_ENABLE_CONDUIT} CACHE BOOL "Enable Conduit usage" FORCE)
|
||||
ENDIF()
|
||||
@@ -279,15 +271,3 @@ ENDIF()
|
||||
IF (DEFINED TPL_ENABLE_RAJA)
|
||||
SET(MFEM_USE_RAJA ${TPL_ENABLE_RAJA} CACHE BOOL "Enable RAJA" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_UMPIRE)
|
||||
SET(MFEM_USE_UMPIRE ${TPL_ENABLE_UMPIRE} CACHE BOOL "Enable Umpire" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_BENCHMARK)
|
||||
SET(MFEM_USE_BENCHMARK ${TPL_ENABLE_BENCHMARK} CACHE BOOL "Enable Google-Benchmark" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_PARELAG)
|
||||
SET(MFEM_USE_PARELAG ${TPL_ENABLE_PARELAG} CACHE BOOL "Enable ParELAG" FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
# the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
# reserved. See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
include(${CMAKE_CURRENT_LIST_DIR}/MFEMConfigVersion.cmake)
|
||||
|
||||
@@ -20,7 +20,7 @@ set(MFEM_USE_METIS @MFEM_USE_METIS@)
|
||||
set(MFEM_USE_METIS_5 @MFEM_USE_METIS_5@)
|
||||
set(MFEM_DEBUG @MFEM_DEBUG@)
|
||||
set(MFEM_USE_EXCEPTIONS @MFEM_USE_EXCEPTIONS@)
|
||||
set(MFEM_USE_ZLIB @MFEM_USE_ZLIB@)
|
||||
set(MFEM_USE_GZSTREAM @MFEM_USE_GZSTREAM@)
|
||||
set(MFEM_USE_LIBUNWIND @MFEM_USE_LIBUNWIND@)
|
||||
set(MFEM_USE_LAPACK @MFEM_USE_LAPACK@)
|
||||
set(MFEM_THREAD_SAFE @MFEM_THREAD_SAFE@)
|
||||
@@ -32,33 +32,19 @@ set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
|
||||
set(MFEM_USE_MESQUITE @MFEM_USE_MESQUITE@)
|
||||
set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
|
||||
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
|
||||
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
|
||||
set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
|
||||
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
|
||||
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
|
||||
set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
|
||||
set(MFEM_USE_GECKO @MFEM_USE_GECKO@)
|
||||
set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
|
||||
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
|
||||
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
|
||||
set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
|
||||
set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
|
||||
set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
|
||||
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
|
||||
set(MFEM_USE_FMS @MFEM_USE_FMS@)
|
||||
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
|
||||
set(MFEM_USE_PUMI @MFEM_USE_PUMI@)
|
||||
set(MFEM_USE_MM @MFEM_USE_MM@)
|
||||
set(MFEM_USE_CUDA @MFEM_USE_CUDA@)
|
||||
set(MFEM_USE_OCCA @MFEM_USE_OCCA@)
|
||||
set(MFEM_USE_RAJA @MFEM_USE_RAJA@)
|
||||
set(MFEM_USE_CEED @MFEM_USE_CEED@)
|
||||
set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
|
||||
set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
|
||||
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
|
||||
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
|
||||
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
|
||||
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
|
||||
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
|
||||
|
||||
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
|
||||
set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
|
||||
|
||||
+14
-60
@@ -1,13 +1,13 @@
|
||||
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_CONFIG_HEADER
|
||||
#define MFEM_CONFIG_HEADER
|
||||
@@ -49,8 +49,8 @@
|
||||
// Throw an exception on errors.
|
||||
#cmakedefine MFEM_USE_EXCEPTIONS
|
||||
|
||||
// Enable zlib in MFEM.
|
||||
#cmakedefine MFEM_USE_ZLIB
|
||||
// Enable gzstream in MFEM.
|
||||
#cmakedefine MFEM_USE_GZSTREAM
|
||||
|
||||
// Enable backtraces for mfem_error through libunwind.
|
||||
#cmakedefine MFEM_USE_LIBUNWIND
|
||||
@@ -74,9 +74,6 @@
|
||||
// [Deprecated] Enable experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
#cmakedefine MFEM_USE_LEGACY_OPENMP
|
||||
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Enable MFEM functionality based on the Mesquite library.
|
||||
#cmakedefine MFEM_USE_MESQUITE
|
||||
|
||||
@@ -86,76 +83,45 @@
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
#cmakedefine MFEM_USE_SUPERLU
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
#cmakedefine MFEM_USE_MUMPS
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable functionality based on the Ginkgo library
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library
|
||||
#cmakedefine MFEM_USE_AMGX
|
||||
// Enable functionality based on the Gecko library
|
||||
#cmakedefine MFEM_USE_GECKO
|
||||
|
||||
// Enable MFEM functionality based on the GnuTLS library
|
||||
#cmakedefine MFEM_USE_GNUTLS
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
#cmakedefine MFEM_USE_GSLIB
|
||||
|
||||
// Enable MFEM functionality based on the NetCDF library
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable MFEM functionality based on the FMS library
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the HiOp library
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Build the HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
#cmakedefine MFEM_USE_HIP
|
||||
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable MFEM functionality based on the libCEED library
|
||||
#cmakedefine MFEM_USE_CEED
|
||||
|
||||
// Enable MFEM functionality based on the Umpire library
|
||||
#cmakedefine MFEM_USE_UMPIRE
|
||||
|
||||
// Enable MFEM functionality based on the ADIOS2 library
|
||||
#cmakedefine MFEM_USE_ADIOS2
|
||||
|
||||
// Enable MFEM functionality based on the Caliper library
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
// Enable MFEM's internal Memory Manager (needed e.g. for MFEM_USE_CUDA)
|
||||
#cmakedefine MFEM_USE_MM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
@@ -172,16 +138,4 @@
|
||||
// library.
|
||||
#cmakedefine MFEM_USE_SIMMETRIX
|
||||
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation
|
||||
#cmakedefine MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
#cmakedefine MFEM_USE_CODIPACK
|
||||
|
||||
// Enable MFEM functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
@@ -1,64 +0,0 @@
|
||||
#------------------------------------------------------------------------------#
|
||||
# Distributed under the OSI-approved Apache License, Version 2.0. See
|
||||
# accompanying file Copyright.txt for details.
|
||||
#------------------------------------------------------------------------------#
|
||||
#
|
||||
# FindADIOS2
|
||||
# -----------
|
||||
#
|
||||
# Try to find the ADIOS2 library
|
||||
#
|
||||
# This module defines the following variables:
|
||||
#
|
||||
# ADIOS2_FOUND - System has ADIOS2
|
||||
# ADIOS2_INCLUDE_DIRS - The ADIOS2 include directory
|
||||
# ADIOS2_LIBRARIES - Link these to use ADIOS2
|
||||
#
|
||||
# and the following imported targets:
|
||||
# ADIOS2::ADIOS2 - The ADIOS2 compression library target
|
||||
#
|
||||
# You can also set the following variable to help guide the search:
|
||||
# ADIOS2_DIR - The install prefix for ADIOS2 containing the
|
||||
# include and lib folders
|
||||
# Note: this can be set as a CMake variable or an
|
||||
# environment variable. If specified as a CMake
|
||||
# variable, it will override any setting specified
|
||||
# as an environment variable.
|
||||
|
||||
if(NOT ADIOS2_FOUND)
|
||||
if((NOT ADIOS2_DIR) AND (NOT (ENV{ADIOS2_DIR} STREQUAL "")))
|
||||
set(ADIOS2_DIR "$ENV{ADIOS2_DIR}")
|
||||
endif()
|
||||
if(ADIOS2_DIR)
|
||||
set(ADIOS2_INCLUDE_OPTS HINTS ${ADIOS2_DIR}/include NO_DEFAULT_PATHS)
|
||||
set(ADIOS2_LIBRARY_OPTS
|
||||
HINTS ${ADIOS2_DIR}/lib ${ADIOS2_DIR}/lib64
|
||||
NO_DEFAULT_PATHS
|
||||
)
|
||||
endif()
|
||||
|
||||
find_path(ADIOS2_INCLUDE_DIR adios2.h ${ADIOS2_INCLUDE_OPTS})
|
||||
|
||||
# adios2 version 2.5.0
|
||||
find_library(ADIOS2_LIBRARY NAMES adios2 ${ADIOS2_LIBRARY_OPTS})
|
||||
|
||||
# adios2 version 2.6.0 and onwards
|
||||
if(NOT ADIOS2_LIBRARY)
|
||||
find_library(ADIOS2_CXX11_MPI_LIBRARY NAMES adios2_cxx11_mpi ${ADIOS2_LIBRARY_OPTS})
|
||||
find_library(ADIOS2_CXX11_LIBRARY NAMES adios2_cxx11 ${ADIOS2_LIBRARY_OPTS})
|
||||
set(ADIOS2_LIBRARY ${ADIOS2_CXX11_MPI_LIBRARY} ${ADIOS2_CXX11_LIBRARY})
|
||||
if(MFEM_USE_MPI)
|
||||
add_definitions(-DADIOS2_USE_MPI)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(ADIOS2
|
||||
FOUND_VAR ADIOS2_FOUND
|
||||
REQUIRED_VARS ADIOS2_LIBRARY ADIOS2_INCLUDE_DIR
|
||||
)
|
||||
if(ADIOS2_FOUND)
|
||||
set(ADIOS2_INCLUDE_DIRS ${ADIOS2_INCLUDE_DIR})
|
||||
set(ADIOS2_LIBRARIES ${ADIOS2_LIBRARY})
|
||||
endif()
|
||||
endif()
|
||||
@@ -1,24 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - AMGX_FOUND
|
||||
# - AMGX_LIBRARIES
|
||||
# - AMGX_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
set(AMGX_REQUIRED_LIBRARIES cusparse cusolver cublas cublasLt nvToolsExt)
|
||||
mfem_find_package(AMGX AMGX AMGX_DIR "include" "amgx_c.h" "lib" "amgx"
|
||||
"Paths to headers required by AMGX." "Libraries required by AMGX.")
|
||||
# Make sure the library location is locked down
|
||||
foreach(lib ${AMGX_REQUIRED_LIBRARIES})
|
||||
list(APPEND AMGX_LIBRARIES ${CUDA_TOOLKIT_ROOT_DIR}/lib64/lib${lib}${CMAKE_SHARED_LIBRARY_SUFFIX})
|
||||
endforeach()
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - AXOM_FOUND
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - BENCHMARK_FOUND
|
||||
# - BENCHMARK_LIBRARIES
|
||||
# - BENCHMARK_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Benchmark BENCHMARK BENCHMARK_DIR
|
||||
"include" "benchmark/benchmark.h"
|
||||
"lib" "benchmark"
|
||||
"Paths to headers required by Google Benchmark."
|
||||
"Libraries required by Google Benchmark.")
|
||||
@@ -1,24 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Automatic differentiation using the CoDiPack library.
|
||||
# www.scicomp.uni-kl.de/codi/
|
||||
# Sets the following variables:
|
||||
# - CODIPACK_FOUND
|
||||
# - CODIPACK_INCLUDE_DIRS
|
||||
# - CODIPACK_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(CODIPACK CODIPACK CODIPACK_DIR
|
||||
"include" "codi.h"
|
||||
"lib" ""
|
||||
"Paths to headers required by CODIPACK."
|
||||
"Libraries required by CODIPACK.")
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Check for "abi::__cxa_demangle" in <cxxabi.h>.
|
||||
# Defines the variables:
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - CALIPER_FOUND
|
||||
# - CALIPER_LIBRARIES
|
||||
# - CALIPER_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Caliper CALIPER CALIPER_DIR
|
||||
"include" "caliper/cali.h"
|
||||
"lib" "caliper"
|
||||
"Paths to headers required by Caliper."
|
||||
"Libraries required by Caliper.")
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - CONDUIT_FOUND
|
||||
|
||||
@@ -1,20 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - FMS_FOUND
|
||||
# - FMS_LIBRARIES
|
||||
# - FMS_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(FMS FMS FMS_DIR
|
||||
"include" fms.h "lib" fms
|
||||
"Paths to headers required by FMS." "Libraries required by FMS.")
|
||||
@@ -1,19 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - GSLIB_FOUND
|
||||
# - GSLIB_LIBRARIES
|
||||
# - GSLIB_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(gslib GSLIB GSLIB_DIR "include" gslib.h "lib" gs
|
||||
"Paths to headers required by GSLIB." "Libraries required by GSLIB.")
|
||||
@@ -0,0 +1,19 @@
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - GECKO_FOUND
|
||||
# - GECKO_LIBRARIES
|
||||
# - GECKO_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Gecko GECKO GECKO_DIR "include;inc" graph.h "lib" gecko
|
||||
"Paths to headers required by Gecko." "Libraries required by Gecko.")
|
||||
@@ -1,36 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Sets the following variables:
|
||||
# - HIOP_FOUND
|
||||
# - HIOP_INCLUDE_DIRS
|
||||
# - HIOP_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(HIOP HIOP HIOP_DIR
|
||||
"include" "hiopInterface.hpp"
|
||||
"lib" "hiop"
|
||||
"Paths to headers required by HIOP."
|
||||
"Libraries required by HIOP.")
|
||||
|
||||
# this test fails with parallel MFEM since mpi.h is not available (cxx compiler is used for some reason)
|
||||
# CHECK_BUILD HIOP_VERSION_OK TRUE
|
||||
#"
|
||||
##include <hiopInterface.hpp>
|
||||
#using namespace hiop;
|
||||
#int main(int argc, char *argv[])
|
||||
#{
|
||||
# MPI_Init(&argc, &argv);
|
||||
# MPI_Comm comm = MPI_COMM_WORLD;
|
||||
#
|
||||
# return 0;
|
||||
#}
|
||||
#")
|
||||
@@ -1,692 +0,0 @@
|
||||
###############################################################################
|
||||
# FindHIP.cmake
|
||||
###############################################################################
|
||||
include(CheckCXXCompilerFlag)
|
||||
###############################################################################
|
||||
# SET: Variable defaults
|
||||
###############################################################################
|
||||
# User defined flags
|
||||
set(HIP_HIPCC_FLAGS "" CACHE STRING "Semicolon delimited flags for HIPCC")
|
||||
set(HIP_HCC_FLAGS "" CACHE STRING "Semicolon delimited flags for HCC")
|
||||
set(HIP_CLANG_FLAGS "" CACHE STRING "Semicolon delimited flags for CLANG")
|
||||
set(HIP_NVCC_FLAGS "" CACHE STRING "Semicolon delimted flags for NVCC")
|
||||
mark_as_advanced(HIP_HIPCC_FLAGS HIP_HCC_FLAGS HIP_CLANG_FLAGS HIP_NVCC_FLAGS)
|
||||
|
||||
set(_hip_configuration_types ${CMAKE_CONFIGURATION_TYPES} ${CMAKE_BUILD_TYPE} Debug MinSizeRel Release RelWithDebInfo)
|
||||
list(REMOVE_DUPLICATES _hip_configuration_types)
|
||||
foreach(config ${_hip_configuration_types})
|
||||
string(TOUPPER ${config} config_upper)
|
||||
set(HIP_HIPCC_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for HIPCC")
|
||||
set(HIP_HCC_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for HCC")
|
||||
set(HIP_CLANG_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for CLANG")
|
||||
set(HIP_NVCC_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for NVCC")
|
||||
mark_as_advanced(HIP_HIPCC_FLAGS_${config_upper} HIP_HCC_FLAGS_${config_upper} HIP_CLANG_FLAGS_${config_upper} HIP_NVCC_FLAGS_${config_upper})
|
||||
endforeach()
|
||||
option(HIP_HOST_COMPILATION_CPP "Host code compilation mode" ON)
|
||||
option(HIP_VERBOSE_BUILD "Print out the commands run while compiling the HIP source file. With the Makefile generator this defaults to VERBOSE variable specified on the command line, but can be forced on with this option." OFF)
|
||||
mark_as_advanced(HIP_HOST_COMPILATION_CPP)
|
||||
|
||||
###############################################################################
|
||||
# FIND: HIP and associated helper binaries
|
||||
###############################################################################
|
||||
|
||||
get_filename_component(_IMPORT_PREFIX "${CMAKE_CURRENT_LIST_DIR}/../" REALPATH)
|
||||
|
||||
# HIP is supported on Linux only
|
||||
if(UNIX AND NOT APPLE AND NOT CYGWIN)
|
||||
# Search for HIP installation
|
||||
if(NOT HIP_ROOT_DIR)
|
||||
# Search in user specified path first
|
||||
find_path(
|
||||
HIP_ROOT_DIR
|
||||
NAMES bin/hipconfig
|
||||
PATHS
|
||||
"$ENV{ROCM_PATH}/hip"
|
||||
ENV HIP_PATH
|
||||
${_IMPORT_PREFIX}
|
||||
/opt/rocm/hip
|
||||
DOC "HIP installed location"
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if(NOT EXISTS ${HIP_ROOT_DIR})
|
||||
if(HIP_FIND_REQUIRED)
|
||||
message(FATAL_ERROR "Specify HIP_ROOT_DIR")
|
||||
elseif(NOT HIP_FIND_QUIETLY)
|
||||
message("HIP_ROOT_DIR not found or specified")
|
||||
endif()
|
||||
endif()
|
||||
# And push it back to the cache
|
||||
set(HIP_ROOT_DIR ${HIP_ROOT_DIR} CACHE PATH "HIP installed location" FORCE)
|
||||
endif()
|
||||
|
||||
# Find HIPCC executable
|
||||
find_program(
|
||||
HIP_HIPCC_EXECUTABLE
|
||||
NAMES hipcc
|
||||
PATHS
|
||||
"${HIP_ROOT_DIR}"
|
||||
ENV ROCM_PATH
|
||||
ENV HIP_PATH
|
||||
/opt/rocm
|
||||
/opt/rocm/hip
|
||||
PATH_SUFFIXES bin
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if(NOT HIP_HIPCC_EXECUTABLE)
|
||||
# Now search in default paths
|
||||
find_program(HIP_HIPCC_EXECUTABLE hipcc)
|
||||
endif()
|
||||
mark_as_advanced(HIP_HIPCC_EXECUTABLE)
|
||||
|
||||
# Find HIPCONFIG executable
|
||||
find_program(
|
||||
HIP_HIPCONFIG_EXECUTABLE
|
||||
NAMES hipconfig
|
||||
PATHS
|
||||
"${HIP_ROOT_DIR}"
|
||||
ENV ROCM_PATH
|
||||
ENV HIP_PATH
|
||||
/opt/rocm
|
||||
/opt/rocm/hip
|
||||
PATH_SUFFIXES bin
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if(NOT HIP_HIPCONFIG_EXECUTABLE)
|
||||
# Now search in default paths
|
||||
find_program(HIP_HIPCONFIG_EXECUTABLE hipconfig)
|
||||
endif()
|
||||
mark_as_advanced(HIP_HIPCONFIG_EXECUTABLE)
|
||||
|
||||
# Find HIPCC_CMAKE_LINKER_HELPER executable
|
||||
find_program(
|
||||
HIP_HIPCC_CMAKE_LINKER_HELPER
|
||||
NAMES hipcc_cmake_linker_helper
|
||||
PATHS
|
||||
"${HIP_ROOT_DIR}"
|
||||
ENV ROCM_PATH
|
||||
ENV HIP_PATH
|
||||
/opt/rocm
|
||||
/opt/rocm/hip
|
||||
PATH_SUFFIXES bin
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if(NOT HIP_HIPCC_CMAKE_LINKER_HELPER)
|
||||
# Now search in default paths
|
||||
find_program(HIP_HIPCC_CMAKE_LINKER_HELPER hipcc_cmake_linker_helper)
|
||||
endif()
|
||||
mark_as_advanced(HIP_HIPCC_CMAKE_LINKER_HELPER)
|
||||
|
||||
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_VERSION)
|
||||
# Compute the version
|
||||
execute_process(
|
||||
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --version
|
||||
OUTPUT_VARIABLE _hip_version
|
||||
ERROR_VARIABLE _hip_error
|
||||
OUTPUT_STRIP_TRAILING_WHITESPACE
|
||||
ERROR_STRIP_TRAILING_WHITESPACE
|
||||
)
|
||||
if(NOT _hip_error)
|
||||
set(HIP_VERSION ${_hip_version} CACHE STRING "Version of HIP as computed from hipcc")
|
||||
else()
|
||||
set(HIP_VERSION "0.0.0" CACHE STRING "Version of HIP as computed by FindHIP()")
|
||||
endif()
|
||||
mark_as_advanced(HIP_VERSION)
|
||||
endif()
|
||||
if(HIP_VERSION)
|
||||
string(REPLACE "." ";" _hip_version_list "${HIP_VERSION}")
|
||||
list(GET _hip_version_list 0 HIP_VERSION_MAJOR)
|
||||
list(GET _hip_version_list 1 HIP_VERSION_MINOR)
|
||||
list(GET _hip_version_list 2 HIP_VERSION_PATCH)
|
||||
set(HIP_VERSION_STRING "${HIP_VERSION}")
|
||||
endif()
|
||||
|
||||
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_PLATFORM)
|
||||
# Compute the platform
|
||||
execute_process(
|
||||
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --platform
|
||||
OUTPUT_VARIABLE _hip_platform
|
||||
OUTPUT_STRIP_TRAILING_WHITESPACE
|
||||
)
|
||||
set(HIP_PLATFORM ${_hip_platform} CACHE STRING "HIP platform as computed by hipconfig")
|
||||
mark_as_advanced(HIP_PLATFORM)
|
||||
endif()
|
||||
|
||||
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_COMPILER)
|
||||
# Compute the compiler
|
||||
execute_process(
|
||||
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --compiler
|
||||
OUTPUT_VARIABLE _hip_compiler
|
||||
OUTPUT_STRIP_TRAILING_WHITESPACE
|
||||
)
|
||||
set(HIP_COMPILER ${_hip_compiler} CACHE STRING "HIP compiler as computed by hipconfig")
|
||||
mark_as_advanced(HIP_COMPILER)
|
||||
endif()
|
||||
|
||||
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_RUNTIME)
|
||||
# Compute the runtime
|
||||
execute_process(
|
||||
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --runtime
|
||||
OUTPUT_VARIABLE _hip_runtime
|
||||
OUTPUT_STRIP_TRAILING_WHITESPACE
|
||||
)
|
||||
set(HIP_RUNTIME ${_hip_runtime} CACHE STRING "HIP runtime as computed by hipconfig")
|
||||
mark_as_advanced(HIP_RUNTIME)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(
|
||||
HIP
|
||||
REQUIRED_VARS
|
||||
HIP_ROOT_DIR
|
||||
HIP_HIPCC_EXECUTABLE
|
||||
HIP_HIPCONFIG_EXECUTABLE
|
||||
HIP_PLATFORM
|
||||
HIP_COMPILER
|
||||
HIP_RUNTIME
|
||||
VERSION_VAR HIP_VERSION
|
||||
)
|
||||
|
||||
###############################################################################
|
||||
# Set HIP CMAKE Flags
|
||||
###############################################################################
|
||||
# Copy the invocation styles from CXX to HIP
|
||||
set(CMAKE_HIP_ARCHIVE_CREATE ${CMAKE_CXX_ARCHIVE_CREATE})
|
||||
set(CMAKE_HIP_ARCHIVE_APPEND ${CMAKE_CXX_ARCHIVE_APPEND})
|
||||
set(CMAKE_HIP_ARCHIVE_FINISH ${CMAKE_CXX_ARCHIVE_FINISH})
|
||||
set(CMAKE_SHARED_LIBRARY_SONAME_HIP_FLAG ${CMAKE_SHARED_LIBRARY_SONAME_CXX_FLAG})
|
||||
set(CMAKE_SHARED_LIBRARY_CREATE_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS})
|
||||
set(CMAKE_SHARED_LIBRARY_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_CXX_FLAGS})
|
||||
#set(CMAKE_SHARED_LIBRARY_LINK_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_LINK_CXX_FLAGS})
|
||||
set(CMAKE_SHARED_LIBRARY_RUNTIME_HIP_FLAG ${CMAKE_SHARED_LIBRARY_RUNTIME_CXX_FLAG})
|
||||
set(CMAKE_SHARED_LIBRARY_RUNTIME_HIP_FLAG_SEP ${CMAKE_SHARED_LIBRARY_RUNTIME_CXX_FLAG_SEP})
|
||||
set(CMAKE_SHARED_LIBRARY_LINK_STATIC_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_LINK_STATIC_CXX_FLAGS})
|
||||
set(CMAKE_SHARED_LIBRARY_LINK_DYNAMIC_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_LINK_DYNAMIC_CXX_FLAGS})
|
||||
|
||||
set(HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS "")
|
||||
set(HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS "")
|
||||
|
||||
if("${HIP_COMPILER}" STREQUAL "nvcc")
|
||||
# Set the CMake Flags to use the nvcc Compiler.
|
||||
set(CMAKE_HIP_CREATE_SHARED_LIBRARY "${HIP_HIPCC_CMAKE_LINKER_HELPER} <CMAKE_SHARED_LIBRARY_CXX_FLAGS> <LANGUAGE_COMPILE_FLAGS> <LINK_FLAGS> <CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <OBJECTS> <LINK_LIBRARIES>")
|
||||
set(CMAKE_HIP_CREATE_SHARED_MODULE "${HIP_HIPCC_CMAKE_LINKER_HELPER} <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <LINK_LIBRARIES> -shared" )
|
||||
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
|
||||
elseif("${HIP_COMPILER}" STREQUAL "hcc")
|
||||
# Set the CMake Flags to use the hcc Compiler.
|
||||
set(CMAKE_HIP_CREATE_SHARED_LIBRARY "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <CMAKE_SHARED_LIBRARY_CXX_FLAGS> <LANGUAGE_COMPILE_FLAGS> <LINK_FLAGS> <CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <OBJECTS> <LINK_LIBRARIES>")
|
||||
set(CMAKE_HIP_CREATE_SHARED_MODULE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <LINK_LIBRARIES> -shared" )
|
||||
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
|
||||
elseif("${HIP_COMPILER}" STREQUAL "clang")
|
||||
#Number of parallel jobs by default is 1
|
||||
if(NOT DEFINED HIP_CLANG_NUM_PARALLEL_JOBS)
|
||||
set(HIP_CLANG_NUM_PARALLEL_JOBS 1)
|
||||
endif()
|
||||
#Add support for parallel build and link
|
||||
if(${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang")
|
||||
check_cxx_compiler_flag("-parallel-jobs=1" HIP_CLANG_SUPPORTS_PARALLEL_JOBS)
|
||||
endif()
|
||||
if(HIP_CLANG_NUM_PARALLEL_JOBS GREATER 1)
|
||||
if(${HIP_CLANG_SUPPORTS_PARALLEL_JOBS})
|
||||
set(HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS "-Wno-format-nonliteral -parallel-jobs=${HIP_CLANG_NUM_PARALLEL_JOBS}")
|
||||
set(HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS "-parallel-jobs=${HIP_CLANG_NUM_PARALLEL_JOBS}")
|
||||
else()
|
||||
message("clang compiler doesn't support parallel jobs")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Set the CMake Flags to use the HIP-Clang Compiler.
|
||||
set(CMAKE_HIP_CREATE_SHARED_LIBRARY "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <CMAKE_SHARED_LIBRARY_CXX_FLAGS> <LANGUAGE_COMPILE_FLAGS> <LINK_FLAGS> <CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <OBJECTS> <LINK_LIBRARIES>")
|
||||
set(CMAKE_HIP_CREATE_SHARED_MODULE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <LINK_LIBRARIES> -shared" )
|
||||
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
|
||||
|
||||
if("${HIP_RUNTIME}" STREQUAL "rocclr")
|
||||
if(TARGET host)
|
||||
message(STATUS "host interface - found")
|
||||
set(HIP_HOST_INTERFACE host)
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Locate helper files
|
||||
###############################################################################
|
||||
macro(HIP_FIND_HELPER_FILE _name _extension)
|
||||
set(_hip_full_name "${_name}.${_extension}")
|
||||
get_filename_component(CMAKE_CURRENT_LIST_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
|
||||
set(HIP_${_name} "${CMAKE_CURRENT_LIST_DIR}/FindHIP/${_hip_full_name}")
|
||||
if(NOT EXISTS "${HIP_${_name}}")
|
||||
set(error_message "${_hip_full_name} not found in ${CMAKE_CURRENT_LIST_DIR}/FindHIP")
|
||||
if(HIP_FIND_REQUIRED)
|
||||
message(FATAL_ERROR "${error_message}")
|
||||
else()
|
||||
if(NOT HIP_FIND_QUIETLY)
|
||||
message(STATUS "${error_message}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
# Set this variable as internal, so the user isn't bugged with it.
|
||||
set(HIP_${_name} ${HIP_${_name}} CACHE INTERNAL "Location of ${_full_name}" FORCE)
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
hip_find_helper_file(run_make2cmake cmake)
|
||||
hip_find_helper_file(run_hipcc cmake)
|
||||
###############################################################################
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Reset compiler flags
|
||||
###############################################################################
|
||||
macro(HIP_RESET_FLAGS)
|
||||
unset(HIP_HIPCC_FLAGS)
|
||||
unset(HIP_HCC_FLAGS)
|
||||
unset(HIP_CLANG_FLAGS)
|
||||
unset(HIP_NVCC_FLAGS)
|
||||
foreach(config ${_hip_configuration_types})
|
||||
string(TOUPPER ${config} config_upper)
|
||||
unset(HIP_HIPCC_FLAGS_${config_upper})
|
||||
unset(HIP_HCC_FLAGS_${config_upper})
|
||||
unset(HIP_CLANG_FLAGS_${config_upper})
|
||||
unset(HIP_NVCC_FLAGS_${config_upper})
|
||||
endforeach()
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Separate the options from the sources
|
||||
###############################################################################
|
||||
macro(HIP_GET_SOURCES_AND_OPTIONS _sources _cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options)
|
||||
set(${_sources})
|
||||
set(${_cmake_options})
|
||||
set(${_hipcc_options})
|
||||
set(${_hcc_options})
|
||||
set(${_clang_options})
|
||||
set(${_nvcc_options})
|
||||
set(_hipcc_found_options FALSE)
|
||||
set(_hcc_found_options FALSE)
|
||||
set(_clang_found_options FALSE)
|
||||
set(_nvcc_found_options FALSE)
|
||||
foreach(arg ${ARGN})
|
||||
if("x${arg}" STREQUAL "xHIPCC_OPTIONS")
|
||||
set(_hipcc_found_options TRUE)
|
||||
set(_hcc_found_options FALSE)
|
||||
set(_clang_found_options FALSE)
|
||||
set(_nvcc_found_options FALSE)
|
||||
elseif("x${arg}" STREQUAL "xHCC_OPTIONS")
|
||||
set(_hipcc_found_options FALSE)
|
||||
set(_hcc_found_options TRUE)
|
||||
set(_clang_found_options FALSE)
|
||||
set(_nvcc_found_options FALSE)
|
||||
elseif("x${arg}" STREQUAL "xCLANG_OPTIONS")
|
||||
set(_hipcc_found_options FALSE)
|
||||
set(_hcc_found_options FALSE)
|
||||
set(_clang_found_options TRUE)
|
||||
set(_nvcc_found_options FALSE)
|
||||
elseif("x${arg}" STREQUAL "xNVCC_OPTIONS")
|
||||
set(_hipcc_found_options FALSE)
|
||||
set(_hcc_found_options FALSE)
|
||||
set(_clang_found_options FALSE)
|
||||
set(_nvcc_found_options TRUE)
|
||||
elseif(
|
||||
"x${arg}" STREQUAL "xEXCLUDE_FROM_ALL" OR
|
||||
"x${arg}" STREQUAL "xSTATIC" OR
|
||||
"x${arg}" STREQUAL "xSHARED" OR
|
||||
"x${arg}" STREQUAL "xMODULE"
|
||||
)
|
||||
list(APPEND ${_cmake_options} ${arg})
|
||||
else()
|
||||
if(_hipcc_found_options)
|
||||
list(APPEND ${_hipcc_options} ${arg})
|
||||
elseif(_hcc_found_options)
|
||||
list(APPEND ${_hcc_options} ${arg})
|
||||
elseif(_clang_found_options)
|
||||
list(APPEND ${_clang_options} ${arg})
|
||||
elseif(_nvcc_found_options)
|
||||
list(APPEND ${_nvcc_options} ${arg})
|
||||
else()
|
||||
# Assume this is a file
|
||||
list(APPEND ${_sources} ${arg})
|
||||
endif()
|
||||
endif()
|
||||
endforeach()
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Add include directories to pass to the hipcc command
|
||||
###############################################################################
|
||||
set(HIP_HIPCC_INCLUDE_ARGS_USER "")
|
||||
macro(HIP_INCLUDE_DIRECTORIES)
|
||||
foreach(dir ${ARGN})
|
||||
list(APPEND HIP_HIPCC_INCLUDE_ARGS_USER $<$<BOOL:${dir}>:-I${dir}>)
|
||||
endforeach()
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# FUNCTION: Helper to avoid clashes of files with the same basename but different paths
|
||||
###############################################################################
|
||||
function(HIP_COMPUTE_BUILD_PATH path build_path)
|
||||
# Convert to cmake style paths
|
||||
file(TO_CMAKE_PATH "${path}" bpath)
|
||||
if(IS_ABSOLUTE "${bpath}")
|
||||
string(FIND "${bpath}" "${CMAKE_CURRENT_BINARY_DIR}" _binary_dir_pos)
|
||||
if(_binary_dir_pos EQUAL 0)
|
||||
file(RELATIVE_PATH bpath "${CMAKE_CURRENT_BINARY_DIR}" "${bpath}")
|
||||
else()
|
||||
file(RELATIVE_PATH bpath "${CMAKE_CURRENT_SOURCE_DIR}" "${bpath}")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Remove leading /
|
||||
string(REGEX REPLACE "^[/]+" "" bpath "${bpath}")
|
||||
# Avoid absolute paths by removing ':'
|
||||
string(REPLACE ":" "_" bpath "${bpath}")
|
||||
# Avoid relative paths that go up the tree
|
||||
string(REPLACE "../" "__/" bpath "${bpath}")
|
||||
# Avoid spaces
|
||||
string(REPLACE " " "_" bpath "${bpath}")
|
||||
# Strip off the filename
|
||||
get_filename_component(bpath "${bpath}" PATH)
|
||||
|
||||
set(${build_path} "${bpath}" PARENT_SCOPE)
|
||||
endfunction()
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Parse OPTIONS from ARGN & set variables prefixed by _option_prefix
|
||||
###############################################################################
|
||||
macro(HIP_PARSE_HIPCC_OPTIONS _option_prefix)
|
||||
set(_hip_found_config)
|
||||
foreach(arg ${ARGN})
|
||||
# Determine if we are dealing with a per-configuration flag
|
||||
foreach(config ${_hip_configuration_types})
|
||||
string(TOUPPER ${config} config_upper)
|
||||
if(arg STREQUAL "${config_upper}")
|
||||
set(_hip_found_config _${arg})
|
||||
# Clear arg to prevent it from being processed anymore
|
||||
set(arg)
|
||||
endif()
|
||||
endforeach()
|
||||
if(arg)
|
||||
list(APPEND ${_option_prefix}${_hip_found_config} "${arg}")
|
||||
endif()
|
||||
endforeach()
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Try and include dependency file if it exists
|
||||
###############################################################################
|
||||
macro(HIP_INCLUDE_HIPCC_DEPENDENCIES dependency_file)
|
||||
set(HIP_HIPCC_DEPEND)
|
||||
set(HIP_HIPCC_DEPEND_REGENERATE FALSE)
|
||||
|
||||
# Create the dependency file if it doesn't exist
|
||||
if(NOT EXISTS ${dependency_file})
|
||||
file(WRITE ${dependency_file} "# Generated by: FindHIP.cmake. Do not edit.\n")
|
||||
endif()
|
||||
# Include the dependency file
|
||||
include(${dependency_file})
|
||||
|
||||
# Verify the existence of all the included files
|
||||
if(HIP_HIPCC_DEPEND)
|
||||
foreach(f ${HIP_HIPCC_DEPEND})
|
||||
if(NOT EXISTS ${f})
|
||||
# If they aren't there, regenerate the file again
|
||||
set(HIP_HIPCC_DEPEND_REGENERATE TRUE)
|
||||
endif()
|
||||
endforeach()
|
||||
else()
|
||||
# No dependencies, so regenerate the file
|
||||
set(HIP_HIPCC_DEPEND_REGENERATE TRUE)
|
||||
endif()
|
||||
|
||||
# Regenerate the dependency file if needed
|
||||
if(HIP_HIPCC_DEPEND_REGENERATE)
|
||||
set(HIP_HIPCC_DEPEND ${dependency_file})
|
||||
file(WRITE ${dependency_file} "# Generated by: FindHIP.cmake. Do not edit.\n")
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# MACRO: Prepare cmake commands for the target
|
||||
###############################################################################
|
||||
macro(HIP_PREPARE_TARGET_COMMANDS _target _format _generated_files _source_files)
|
||||
set(_hip_flags "")
|
||||
string(TOUPPER "${CMAKE_BUILD_TYPE}" _hip_build_configuration)
|
||||
if(HIP_HOST_COMPILATION_CPP)
|
||||
set(HIP_C_OR_CXX CXX)
|
||||
else()
|
||||
set(HIP_C_OR_CXX C)
|
||||
endif()
|
||||
set(generated_extension ${CMAKE_${HIP_C_OR_CXX}_OUTPUT_EXTENSION})
|
||||
|
||||
# Initialize list of includes with those specified by the user. Append with
|
||||
# ones specified to cmake directly.
|
||||
set(HIP_HIPCC_INCLUDE_ARGS ${HIP_HIPCC_INCLUDE_ARGS_USER})
|
||||
|
||||
# Add the include directories
|
||||
set(include_directories_generator "$<TARGET_PROPERTY:${_target},INCLUDE_DIRECTORIES>")
|
||||
list(APPEND HIP_HIPCC_INCLUDE_ARGS "$<$<BOOL:${include_directories_generator}>:-I$<JOIN:${include_directories_generator}, -I>>")
|
||||
|
||||
get_directory_property(_hip_include_directories INCLUDE_DIRECTORIES)
|
||||
list(REMOVE_DUPLICATES _hip_include_directories)
|
||||
if(_hip_include_directories)
|
||||
foreach(dir ${_hip_include_directories})
|
||||
list(APPEND HIP_HIPCC_INCLUDE_ARGS $<$<BOOL:${dir}>:-I${dir}>)
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
HIP_GET_SOURCES_AND_OPTIONS(_hip_sources _hip_cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options ${ARGN})
|
||||
HIP_PARSE_HIPCC_OPTIONS(HIP_HIPCC_FLAGS ${_hipcc_options})
|
||||
HIP_PARSE_HIPCC_OPTIONS(HIP_HCC_FLAGS ${_hcc_options})
|
||||
HIP_PARSE_HIPCC_OPTIONS(HIP_CLANG_FLAGS ${_clang_options})
|
||||
HIP_PARSE_HIPCC_OPTIONS(HIP_NVCC_FLAGS ${_nvcc_options})
|
||||
|
||||
# Add the compile definitions
|
||||
set(compile_definition_generator "$<TARGET_PROPERTY:${_target},COMPILE_DEFINITIONS>")
|
||||
list(APPEND HIP_HIPCC_FLAGS "$<$<BOOL:${compile_definition_generator}>:-D$<JOIN:${compile_definition_generator}, -D>>")
|
||||
|
||||
# Check if we are building shared library.
|
||||
set(_hip_build_shared_libs FALSE)
|
||||
list(FIND _hip_cmake_options SHARED _hip_found_SHARED)
|
||||
list(FIND _hip_cmake_options MODULE _hip_found_MODULE)
|
||||
if(_hip_found_SHARED GREATER -1 OR _hip_found_MODULE GREATER -1)
|
||||
set(_hip_build_shared_libs TRUE)
|
||||
endif()
|
||||
list(FIND _hip_cmake_options STATIC _hip_found_STATIC)
|
||||
if(_hip_found_STATIC GREATER -1)
|
||||
set(_hip_build_shared_libs FALSE)
|
||||
endif()
|
||||
|
||||
# If we are building a shared library, add extra flags to HIP_HIPCC_FLAGS
|
||||
if(_hip_build_shared_libs)
|
||||
list(APPEND HIP_HCC_FLAGS "-fPIC")
|
||||
list(APPEND HIP_CLANG_FLAGS "-fPIC")
|
||||
list(APPEND HIP_NVCC_FLAGS "--shared -Xcompiler '-fPIC'")
|
||||
endif()
|
||||
|
||||
# Set host compiler
|
||||
set(HIP_HOST_COMPILER "${CMAKE_${HIP_C_OR_CXX}_COMPILER}")
|
||||
|
||||
# Set compiler flags
|
||||
set(_HIP_HOST_FLAGS "set(CMAKE_HOST_FLAGS ${CMAKE_${HIP_C_OR_CXX}_FLAGS})")
|
||||
set(_HIP_HIPCC_FLAGS "set(HIP_HIPCC_FLAGS ${HIP_HIPCC_FLAGS})")
|
||||
set(_HIP_HCC_FLAGS "set(HIP_HCC_FLAGS ${HIP_HCC_FLAGS})")
|
||||
set(_HIP_CLANG_FLAGS "set(HIP_CLANG_FLAGS ${HIP_CLANG_FLAGS})")
|
||||
set(_HIP_NVCC_FLAGS "set(HIP_NVCC_FLAGS ${HIP_NVCC_FLAGS})")
|
||||
foreach(config ${_hip_configuration_types})
|
||||
string(TOUPPER ${config} config_upper)
|
||||
set(_HIP_HOST_FLAGS "${_HIP_HOST_FLAGS}\nset(CMAKE_HOST_FLAGS_${config_upper} ${CMAKE_${HIP_C_OR_CXX}_FLAGS_${config_upper}})")
|
||||
set(_HIP_HIPCC_FLAGS "${_HIP_HIPCC_FLAGS}\nset(HIP_HIPCC_FLAGS_${config_upper} ${HIP_HIPCC_FLAGS_${config_upper}})")
|
||||
set(_HIP_HCC_FLAGS "${_HIP_HCC_FLAGS}\nset(HIP_HCC_FLAGS_${config_upper} ${HIP_HCC_FLAGS_${config_upper}})")
|
||||
set(_HIP_CLANG_FLAGS "${_HIP_CLANG_FLAGS}\nset(HIP_CLANG_FLAGS_${config_upper} ${HIP_CLANG_FLAGS_${config_upper}})")
|
||||
set(_HIP_NVCC_FLAGS "${_HIP_NVCC_FLAGS}\nset(HIP_NVCC_FLAGS_${config_upper} ${HIP_NVCC_FLAGS_${config_upper}})")
|
||||
endforeach()
|
||||
|
||||
# Reset the output variable
|
||||
set(_hip_generated_files "")
|
||||
set(_hip_source_files "")
|
||||
|
||||
# Iterate over all arguments and create custom commands for all source files
|
||||
foreach(file ${ARGN})
|
||||
# Ignore any file marked as a HEADER_FILE_ONLY
|
||||
get_source_file_property(_is_header ${file} HEADER_FILE_ONLY)
|
||||
# Allow per source file overrides of the format. Also allows compiling non .cu files.
|
||||
get_source_file_property(_hip_source_format ${file} HIP_SOURCE_PROPERTY_FORMAT)
|
||||
if((${file} MATCHES "\\.cu$" OR _hip_source_format) AND NOT _is_header)
|
||||
set(host_flag FALSE)
|
||||
else()
|
||||
set(host_flag TRUE)
|
||||
endif()
|
||||
|
||||
if(NOT host_flag)
|
||||
# Determine output directory
|
||||
HIP_COMPUTE_BUILD_PATH("${file}" hip_build_path)
|
||||
set(hip_compile_output_dir "${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${_target}.dir/${hip_build_path}")
|
||||
|
||||
get_filename_component(basename ${file} NAME)
|
||||
set(generated_file_path "${hip_compile_output_dir}/${CMAKE_CFG_INTDIR}")
|
||||
set(generated_file_basename "${_target}_generated_${basename}${generated_extension}")
|
||||
|
||||
# Set file names
|
||||
set(generated_file "${generated_file_path}/${generated_file_basename}")
|
||||
set(cmake_dependency_file "${hip_compile_output_dir}/${generated_file_basename}.depend")
|
||||
set(custom_target_script_pregen "${hip_compile_output_dir}/${generated_file_basename}.cmake.pre-gen")
|
||||
set(custom_target_script "${hip_compile_output_dir}/${generated_file_basename}.cmake")
|
||||
|
||||
# Set properties for object files
|
||||
set_source_files_properties("${generated_file}"
|
||||
PROPERTIES
|
||||
EXTERNAL_OBJECT true # This is an object file not to be compiled, but only be linked
|
||||
)
|
||||
|
||||
# Don't add CMAKE_CURRENT_SOURCE_DIR if the path is already an absolute path
|
||||
get_filename_component(file_path "${file}" PATH)
|
||||
if(IS_ABSOLUTE "${file_path}")
|
||||
set(source_file "${file}")
|
||||
else()
|
||||
set(source_file "${CMAKE_CURRENT_SOURCE_DIR}/${file}")
|
||||
endif()
|
||||
|
||||
# Bring in the dependencies
|
||||
HIP_INCLUDE_HIPCC_DEPENDENCIES(${cmake_dependency_file})
|
||||
|
||||
# Configure the build script
|
||||
configure_file("${HIP_run_hipcc}" "${custom_target_script_pregen}" @ONLY)
|
||||
file(GENERATE
|
||||
OUTPUT "${custom_target_script}"
|
||||
INPUT "${custom_target_script_pregen}"
|
||||
)
|
||||
set(main_dep DEPENDS ${source_file})
|
||||
if(CMAKE_GENERATOR MATCHES "Makefiles")
|
||||
set(verbose_output "$(VERBOSE)")
|
||||
elseif(HIP_VERBOSE_BUILD)
|
||||
set(verbose_output ON)
|
||||
else()
|
||||
set(verbose_output OFF)
|
||||
endif()
|
||||
|
||||
# Create up the comment string
|
||||
file(RELATIVE_PATH generated_file_relative_path "${CMAKE_BINARY_DIR}" "${generated_file}")
|
||||
set(hip_build_comment_string "Building HIPCC object ${generated_file_relative_path}")
|
||||
|
||||
# Build the generated file and dependency file
|
||||
add_custom_command(
|
||||
OUTPUT ${generated_file}
|
||||
# These output files depend on the source_file and the contents of cmake_dependency_file
|
||||
${main_dep}
|
||||
DEPENDS ${HIP_HIPCC_DEPEND}
|
||||
DEPENDS ${custom_target_script}
|
||||
# Make sure the output directory exists before trying to write to it.
|
||||
COMMAND ${CMAKE_COMMAND} -E make_directory "${generated_file_path}"
|
||||
COMMAND ${CMAKE_COMMAND} ARGS
|
||||
-D verbose:BOOL=${verbose_output}
|
||||
-D build_configuration:STRING=${_hip_build_configuration}
|
||||
-D "generated_file:STRING=${generated_file}"
|
||||
-P "${custom_target_script}"
|
||||
WORKING_DIRECTORY "${hip_compile_output_dir}"
|
||||
COMMENT "${hip_build_comment_string}"
|
||||
)
|
||||
|
||||
# Make sure the build system knows the file is generated
|
||||
set_source_files_properties(${generated_file} PROPERTIES GENERATED TRUE)
|
||||
list(APPEND _hip_generated_files ${generated_file})
|
||||
list(APPEND _hip_source_files ${file})
|
||||
endif()
|
||||
endforeach()
|
||||
|
||||
# Set the return parameter
|
||||
set(${_generated_files} ${_hip_generated_files})
|
||||
set(${_source_files} ${_hip_source_files})
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# HIP_ADD_EXECUTABLE
|
||||
###############################################################################
|
||||
macro(HIP_ADD_EXECUTABLE hip_target)
|
||||
# Separate the sources from the options
|
||||
HIP_GET_SOURCES_AND_OPTIONS(_sources _cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options ${ARGN})
|
||||
HIP_PREPARE_TARGET_COMMANDS(${hip_target} OBJ _generated_files _source_files ${_sources} HIPCC_OPTIONS ${_hipcc_options} HCC_OPTIONS ${_hcc_options} CLANG_OPTIONS ${_clang_options} NVCC_OPTIONS ${_nvcc_options})
|
||||
if(_source_files)
|
||||
list(REMOVE_ITEM _sources ${_source_files})
|
||||
endif()
|
||||
if("${HIP_COMPILER}" STREQUAL "hcc")
|
||||
if("x${HCC_HOME}" STREQUAL "x")
|
||||
if (DEFINED ENV{ROCM_PATH})
|
||||
set(HCC_HOME "$ENV{ROCM_PATH}/hcc")
|
||||
elseif(DEFINED ENV{HIP_PATH})
|
||||
set(HCC_HOME "$ENV{HIP_PATH}/../hcc")
|
||||
else()
|
||||
set(HCC_HOME "/opt/rocm/hcc")
|
||||
endif()
|
||||
endif()
|
||||
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
|
||||
elseif("${HIP_COMPILER}" STREQUAL "clang")
|
||||
if("x${HIP_CLANG_PATH}" STREQUAL "x")
|
||||
if(DEFINED ENV{HIP_CLANG_PATH})
|
||||
set(HIP_CLANG_PATH $ENV{HIP_CLANG_PATH})
|
||||
elseif(DEFINED ENV{ROCM_PATH})
|
||||
set(HIP_CLANG_PATH "$ENV{ROCM_PATH}/llvm/bin")
|
||||
elseif(DEFINED ENV{HIP_PATH})
|
||||
set(HIP_CLANG_PATH "$ENV{HIP_PATH}/../llvm/bin")
|
||||
else()
|
||||
set(HIP_CLANG_PATH "/opt/rocm/llvm/bin")
|
||||
endif()
|
||||
endif()
|
||||
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
|
||||
else()
|
||||
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
|
||||
endif()
|
||||
if ("${_sources}" STREQUAL "")
|
||||
add_executable(${hip_target} ${_cmake_options} ${_generated_files} "")
|
||||
else()
|
||||
add_executable(${hip_target} ${_cmake_options} ${_generated_files} ${_sources})
|
||||
endif()
|
||||
set_target_properties(${hip_target} PROPERTIES LINKER_LANGUAGE HIP)
|
||||
# Link with host
|
||||
if (HIP_HOST_INTERFACE)
|
||||
# hip rt should be rocclr, compiler should be clang
|
||||
target_link_libraries(${hip_target} ${HIP_HOST_INTERFACE})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
###############################################################################
|
||||
# HIP_ADD_LIBRARY
|
||||
###############################################################################
|
||||
macro(HIP_ADD_LIBRARY hip_target)
|
||||
# Separate the sources from the options
|
||||
HIP_GET_SOURCES_AND_OPTIONS(_sources _cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options ${ARGN})
|
||||
HIP_PREPARE_TARGET_COMMANDS(${hip_target} OBJ _generated_files _source_files ${_sources} ${_cmake_options} HIPCC_OPTIONS ${_hipcc_options} HCC_OPTIONS ${_hcc_options} CLANG_OPTIONS ${_clang_options} NVCC_OPTIONS ${_nvcc_options})
|
||||
if(_source_files)
|
||||
list(REMOVE_ITEM _sources ${_source_files})
|
||||
endif()
|
||||
if ("${_sources}" STREQUAL "")
|
||||
add_library(${hip_target} ${_cmake_options} ${_generated_files} "")
|
||||
else()
|
||||
add_library(${hip_target} ${_cmake_options} ${_generated_files} ${_sources})
|
||||
endif()
|
||||
set_target_properties(${hip_target} PROPERTIES LINKER_LANGUAGE ${HIP_C_OR_CXX})
|
||||
# Link with host
|
||||
if (HIP_HOST_INTERFACE)
|
||||
# hip rt should be rocclr, compiler should be clang
|
||||
target_link_libraries(${hip_target} ${HIP_HOST_INTERFACE})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# vim: ts=4:sw=4:expandtab:smartindent
|
||||
@@ -1,182 +0,0 @@
|
||||
###############################################################################
|
||||
# Runs commands using HIPCC
|
||||
###############################################################################
|
||||
|
||||
###############################################################################
|
||||
# This file runs the hipcc commands to produce the desired output file
|
||||
# along with the dependency file needed by CMake to compute dependencies.
|
||||
#
|
||||
# Input variables:
|
||||
#
|
||||
# verbose:BOOL=<> OFF: Be as quiet as possible (default)
|
||||
# ON : Describe each step
|
||||
# build_configuration:STRING=<> Build configuration. Defaults to Debug.
|
||||
# generated_file:STRING=<> File to generate. Mandatory argument.
|
||||
|
||||
if(NOT build_configuration)
|
||||
set(build_configuration Debug)
|
||||
endif()
|
||||
if(NOT generated_file)
|
||||
message(FATAL_ERROR "You must specify generated_file on the command line")
|
||||
endif()
|
||||
|
||||
# Set these up as variables to make reading the generated file easier
|
||||
set(HIP_HIPCC_EXECUTABLE "@HIP_HIPCC_EXECUTABLE@") # path
|
||||
set(HIP_HIPCONFIG_EXECUTABLE "@HIP_HIPCONFIG_EXECUTABLE@") #path
|
||||
set(HIP_HOST_COMPILER "@HIP_HOST_COMPILER@") # path
|
||||
set(CMAKE_COMMAND "@CMAKE_COMMAND@") # path
|
||||
set(HIP_run_make2cmake "@HIP_run_make2cmake@") # path
|
||||
set(HCC_HOME "@HCC_HOME@") #path
|
||||
set(HIP_CLANG_PATH "@HIP_CLANG_PATH@") #path
|
||||
set(HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS "@HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS@")
|
||||
|
||||
@HIP_HOST_FLAGS@
|
||||
@_HIP_HIPCC_FLAGS@
|
||||
@_HIP_HCC_FLAGS@
|
||||
@_HIP_CLANG_FLAGS@
|
||||
@_HIP_NVCC_FLAGS@
|
||||
#Needed to bring the HIP_HIPCC_INCLUDE_ARGS variable in scope
|
||||
set(HIP_HIPCC_INCLUDE_ARGS @HIP_HIPCC_INCLUDE_ARGS@) # list
|
||||
|
||||
set(cmake_dependency_file "@cmake_dependency_file@") # path
|
||||
set(source_file "@source_file@") # path
|
||||
set(host_flag "@host_flag@") # bool
|
||||
|
||||
# Determine compiler and compiler flags
|
||||
execute_process(COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --platform OUTPUT_VARIABLE HIP_PLATFORM OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
execute_process(COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --compiler OUTPUT_VARIABLE HIP_COMPILER OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
execute_process(COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --runtime OUTPUT_VARIABLE HIP_RUNTIME OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
if(NOT host_flag)
|
||||
set(__CC ${HIP_HIPCC_EXECUTABLE})
|
||||
if("${HIP_PLATFORM}" STREQUAL "amd")
|
||||
if("${HIP_COMPILER}" STREQUAL "hcc")
|
||||
if(NOT "x${HCC_HOME}" STREQUAL "x")
|
||||
set(ENV{HCC_HOME} ${HCC_HOME})
|
||||
endif()
|
||||
set(__CC_FLAGS ${HIP_HIPCC_FLAGS} ${HIP_HCC_FLAGS} ${HIP_HIPCC_FLAGS_${build_configuration}} ${HIP_HCC_FLAGS_${build_configuration}})
|
||||
elseif("${HIP_COMPILER}" STREQUAL "clang")
|
||||
if(NOT "x${HIP_CLANG_PATH}" STREQUAL "x")
|
||||
set(ENV{HIP_CLANG_PATH} ${HIP_CLANG_PATH})
|
||||
endif()
|
||||
# Temporarily include HIP_HCC_FLAGS for HIP-Clang for PyTorch builds
|
||||
set(__CC_FLAGS ${HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS} ${HIP_HIPCC_FLAGS} ${HIP_HCC_FLAGS} ${HIP_CLANG_FLAGS} ${HIP_HIPCC_FLAGS_${build_configuration}} ${HIP_HCC_FLAGS_${build_configuration}} ${HIP_CLANG_FLAGS_${build_configuration}})
|
||||
endif()
|
||||
else()
|
||||
set(__CC_FLAGS ${HIP_HIPCC_FLAGS} ${HIP_NVCC_FLAGS} ${HIP_HIPCC_FLAGS_${build_configuration}} ${HIP_NVCC_FLAGS_${build_configuration}})
|
||||
endif()
|
||||
else()
|
||||
set(__CC ${HIP_HOST_COMPILER})
|
||||
set(__CC_FLAGS ${CMAKE_HOST_FLAGS} ${CMAKE_HOST_FLAGS_${build_configuration}})
|
||||
endif()
|
||||
set(__CC_INCLUDES ${HIP_HIPCC_INCLUDE_ARGS})
|
||||
|
||||
# hip_execute_process - Executes a command with optional command echo and status message.
|
||||
# status - Status message to print if verbose is true
|
||||
# command - COMMAND argument from the usual execute_process argument structure
|
||||
# ARGN - Remaining arguments are the command with arguments
|
||||
# HIP_result - Return value from running the command
|
||||
macro(hip_execute_process status command)
|
||||
set(_command ${command})
|
||||
if(NOT "x${_command}" STREQUAL "xCOMMAND")
|
||||
message(FATAL_ERROR "Malformed call to hip_execute_process. Missing COMMAND as second argument. (command = ${command})")
|
||||
endif()
|
||||
if(verbose)
|
||||
execute_process(COMMAND "${CMAKE_COMMAND}" -E echo -- ${status})
|
||||
# Build command string to print
|
||||
set(hip_execute_process_string)
|
||||
foreach(arg ${ARGN})
|
||||
# Escape quotes if any
|
||||
string(REPLACE "\"" "\\\"" arg ${arg})
|
||||
# Surround args with spaces with quotes
|
||||
if(arg MATCHES " ")
|
||||
list(APPEND hip_execute_process_string "\"${arg}\"")
|
||||
else()
|
||||
list(APPEND hip_execute_process_string ${arg})
|
||||
endif()
|
||||
endforeach()
|
||||
# Echo the command
|
||||
execute_process(COMMAND ${CMAKE_COMMAND} -E echo ${hip_execute_process_string})
|
||||
endif()
|
||||
# Run the command
|
||||
execute_process(COMMAND ${ARGN} RESULT_VARIABLE HIP_result)
|
||||
endmacro()
|
||||
|
||||
# Delete the target file
|
||||
hip_execute_process(
|
||||
"Removing ${generated_file}"
|
||||
COMMAND "${CMAKE_COMMAND}" -E remove "${generated_file}"
|
||||
)
|
||||
|
||||
# Generate the dependency file
|
||||
hip_execute_process(
|
||||
"Generating dependency file: ${cmake_dependency_file}.pre"
|
||||
COMMAND "${__CC}"
|
||||
-M
|
||||
"${source_file}"
|
||||
-o "${cmake_dependency_file}.pre"
|
||||
${__CC_FLAGS}
|
||||
${__CC_INCLUDES}
|
||||
)
|
||||
|
||||
if(HIP_result)
|
||||
message(FATAL_ERROR "Error generating ${generated_file}")
|
||||
endif()
|
||||
|
||||
# Generate the cmake readable dependency file to a temp file
|
||||
hip_execute_process(
|
||||
"Generating temporary cmake readable file: ${cmake_dependency_file}.tmp"
|
||||
COMMAND "${CMAKE_COMMAND}"
|
||||
-D "input_file:FILEPATH=${cmake_dependency_file}.pre"
|
||||
-D "output_file:FILEPATH=${cmake_dependency_file}.tmp"
|
||||
-D "verbose=${verbose}"
|
||||
-P "${HIP_run_make2cmake}"
|
||||
)
|
||||
|
||||
if(HIP_result)
|
||||
message(FATAL_ERROR "Error generating ${generated_file}")
|
||||
endif()
|
||||
|
||||
# Copy the file if it is different
|
||||
hip_execute_process(
|
||||
"Copy if different ${cmake_dependency_file}.tmp to ${cmake_dependency_file}"
|
||||
COMMAND "${CMAKE_COMMAND}" -E copy_if_different "${cmake_dependency_file}.tmp" "${cmake_dependency_file}"
|
||||
)
|
||||
|
||||
if(HIP_result)
|
||||
message(FATAL_ERROR "Error generating ${generated_file}")
|
||||
endif()
|
||||
|
||||
# Delete the temporary file
|
||||
hip_execute_process(
|
||||
"Removing ${cmake_dependency_file}.tmp and ${cmake_dependency_file}.pre"
|
||||
COMMAND "${CMAKE_COMMAND}" -E remove "${cmake_dependency_file}.tmp" "${cmake_dependency_file}.pre"
|
||||
)
|
||||
|
||||
if(HIP_result)
|
||||
message(FATAL_ERROR "Error generating ${generated_file}")
|
||||
endif()
|
||||
|
||||
# Generate the output file
|
||||
hip_execute_process(
|
||||
"Generating ${generated_file}"
|
||||
COMMAND "${__CC}"
|
||||
-c
|
||||
"${source_file}"
|
||||
-o "${generated_file}"
|
||||
${__CC_FLAGS}
|
||||
${__CC_INCLUDES}
|
||||
)
|
||||
|
||||
if(HIP_result)
|
||||
# Make sure that we delete the output file
|
||||
hip_execute_process(
|
||||
"Removing ${generated_file}"
|
||||
COMMAND "${CMAKE_COMMAND}" -E remove "${generated_file}"
|
||||
)
|
||||
message(FATAL_ERROR "Error generating file ${generated_file}")
|
||||
else()
|
||||
if(verbose)
|
||||
message("Generated ${generated_file} successfully.")
|
||||
endif()
|
||||
endif()
|
||||
# vim: ts=4:sw=4:expandtab:smartindent
|
||||
@@ -1,50 +0,0 @@
|
||||
###############################################################################
|
||||
# Computes dependencies using HIPCC
|
||||
###############################################################################
|
||||
|
||||
###############################################################################
|
||||
# This file converts dependency files generated using hipcc to a format that
|
||||
# cmake can understand.
|
||||
|
||||
# Input variables:
|
||||
#
|
||||
# input_file:STRING=<> Dependency file to parse. Required argument
|
||||
# output_file:STRING=<> Output file to generate. Required argument
|
||||
|
||||
if(NOT input_file OR NOT output_file)
|
||||
message(FATAL_ERROR "You must specify input_file and output_file on the command line")
|
||||
endif()
|
||||
|
||||
file(READ ${input_file} depend_text)
|
||||
|
||||
if (NOT "${depend_text}" STREQUAL "")
|
||||
string(REPLACE " /" "\n/" depend_text ${depend_text})
|
||||
string(REGEX REPLACE "^.*:" "" depend_text ${depend_text})
|
||||
string(REGEX REPLACE "[ \\\\]*\n" ";" depend_text ${depend_text})
|
||||
|
||||
set(dependency_list "")
|
||||
|
||||
foreach(file ${depend_text})
|
||||
string(REGEX REPLACE "^ +" "" file ${file})
|
||||
if(NOT EXISTS "${file}")
|
||||
message(WARNING " Removing non-existent dependency file: ${file}")
|
||||
set(file "")
|
||||
endif()
|
||||
|
||||
if(NOT IS_DIRECTORY "${file}")
|
||||
get_filename_component(file_absolute "${file}" ABSOLUTE)
|
||||
list(APPEND dependency_list "${file_absolute}")
|
||||
endif()
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
# Remove the duplicate entries and sort them.
|
||||
list(REMOVE_DUPLICATES dependency_list)
|
||||
list(SORT dependency_list)
|
||||
|
||||
foreach(file ${dependency_list})
|
||||
set(hip_hipcc_depend "${hip_hipcc_depend} \"${file}\"\n")
|
||||
endforeach()
|
||||
|
||||
file(WRITE ${output_file} "# Generated by: FindHIP.cmake. Do not edit.\nSET(HIP_HIPCC_DEPEND\n ${hip_hipcc_depend})\n\n")
|
||||
# vim: ts=4:sw=4:expandtab:smartindent
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - HYPRE_FOUND
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Find libdl.
|
||||
# Defines:
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Find libunwind.
|
||||
# Defines the following variables:
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - METIS_FOUND
|
||||
@@ -25,16 +25,16 @@ mfem_find_package(METIS METIS METIS_DIR "include;Lib" "metis.h"
|
||||
|
||||
int main()
|
||||
{
|
||||
idx_t n = 10;
|
||||
idx_t nparts = 5;
|
||||
idx_t edgecut;
|
||||
idx_t* partitioning = new idx_t[10];
|
||||
idx_t* I = partitioning,
|
||||
int n = 10;
|
||||
int nparts = 5;
|
||||
int edgecut;
|
||||
int* partitioning = new int[10];
|
||||
int* I = partitioning,
|
||||
* J = partitioning;
|
||||
|
||||
idx_t ncon = 1;
|
||||
int ncon = 1;
|
||||
int err;
|
||||
idx_t options[40];
|
||||
int options[40];
|
||||
|
||||
METIS_SetDefaultOptions(options);
|
||||
options[10] = 1; // set METIS_OPTION_CONTIG
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Find the libraries needed for backtrace in MFEM. This is a "meta-package",
|
||||
# i.e. it simply combines all packages from MFEMBacktrace_REQUIRED_PACKAGES.
|
||||
|
||||
@@ -1,32 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MKL_CPARDISO_FOUND
|
||||
# - MKL_CPARDISO_LIBRARIES
|
||||
# - MKL_CPARDISO_INCLUDE_DIRS
|
||||
|
||||
if(NOT MKL_MPI_WRAPPER_LIB)
|
||||
message(FATAL_ERROR "MKL CPardiso enabled but no MKL MPI Wrapper lib specified")
|
||||
endif()
|
||||
|
||||
if(NOT MKL_LIBRARY_DIR)
|
||||
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
|
||||
set(MKL_LIBRARY_DIR "lib")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MKL_CPARDISO MKL_CPARDISO
|
||||
MKL_CPARDISO_DIR "include" mkl_cluster_sparse_solver.h ${MKL_LIBRARY_DIR} mkl_core
|
||||
"Paths to headers required by MKL CPardiso." "Libraries required by MKL CPARDISO."
|
||||
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
|
||||
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential
|
||||
ADD_COMPONENT MKL_MPI_WRAPPER "include" "" ${MKL_LIBRARY_DIR} ${MKL_MPI_WRAPPER_LIB})
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Find MPFR.
|
||||
# Defines the following variables:
|
||||
|
||||
@@ -1,23 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Sets the following variables:
|
||||
# - MUMPS_FOUND
|
||||
# - MUMPS_INCLUDE_DIRS
|
||||
# - MUMPS_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"include" dmumps_c.h "lib" dmumps
|
||||
"Paths to headers required by MUMPS."
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MESQUITE_FOUND
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - NETCDF_FOUND
|
||||
@@ -15,20 +15,5 @@
|
||||
# - NETCDF_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
# We need to guard against the case where HDF5 was already found but without
|
||||
# the HL extensions (in which case mfem_find_package will treat the package
|
||||
# as already having been found), so we reset the variable to force FindHDF5.cmake
|
||||
# to be called for a second time
|
||||
set(HDF5_FOUND OFF)
|
||||
enable_language(C) # FindHDF5.cmake uses the C compiler
|
||||
mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
|
||||
"Paths to headers required by NetCDF." "Libraries required by NetCDF.")
|
||||
# The HL extension libraries are in a separate variable and must precede
|
||||
# the "regular" hdf5 library, as hdf5_hl depends on hdf5
|
||||
# The netcdf library will always be the first element of NETCDF_LIBRARIES
|
||||
# and we need to insert after that library but before the hdf5 library, so
|
||||
# position 1 is used
|
||||
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - OCCA_FOUND
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - PARELAG_FOUND
|
||||
# - PARELAG_LIBRARIES
|
||||
# - PARELAG_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(PARELAG PARELAG PARELAG_DIR "" "" "" ""
|
||||
"Paths to headers required by ParELAG." "Libraries required by ParELAG.")
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Find POSIX clocks.
|
||||
# Defines:
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Sets the following variables
|
||||
# - ParMETIS_FOUND
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - RAJA_FOUND
|
||||
|
||||
@@ -1,44 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Sets the following variables:
|
||||
# - SLEPC_FOUND
|
||||
# - SLEPC_INCLUDE_DIRS
|
||||
# - SLEPC_LIBRARIES
|
||||
|
||||
set(SLEPc_REQUIRED_PACKAGES "PETSC" CACHE STRING
|
||||
"Additional packages required by SLEPc")
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(SLEPc SLEPC SLEPC_DIR
|
||||
"include" "slepceps.h"
|
||||
"${PETSC_ARCH}/lib" "slepc" # add NAMES_PER_DIR?
|
||||
"Paths to headers required by SLEPc."
|
||||
"Libraries required by SLEPc."
|
||||
ADD_COMPONENT "config" "${PETSC_ARCH}/include" "slepcconf.h" "" ""
|
||||
CHECK_BUILD SLEPC_VERSION_OK TRUE
|
||||
"
|
||||
#include \"petsc.h\"
|
||||
#include \"slepceps.h\"
|
||||
int main()
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
int argc = 0;
|
||||
char** argv = NULL;
|
||||
ierr = SlepcInitialize(&argc, &argv, PETSC_NULL, PETSC_NULL);
|
||||
EPS eps;
|
||||
ierr = EPSCreate(PETSC_COMM_SELF, &eps); CHKERRQ(ierr);
|
||||
ierr = EPSDestroy(&eps); CHKERRQ(ierr);
|
||||
ierr = SlepcFinalize(); CHKERRQ(ierr);
|
||||
return 0;
|
||||
}
|
||||
"
|
||||
)
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Sets the following variables:
|
||||
# - STRUMPACK_FOUND
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - SUNDIALS_FOUND
|
||||
@@ -20,15 +20,10 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
"Paths to headers required by SUNDIALS." "Libraries required by SUNDIALS."
|
||||
ADD_COMPONENT NVector_Serial
|
||||
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
|
||||
ADD_COMPONENT NVector_Cuda
|
||||
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT NVector_Parallel
|
||||
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
|
||||
ADD_COMPONENT NVector_MPIPlusX
|
||||
"include" nvector/nvector_mpiplusx.h "lib" sundials_nvecmpiplusx
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT CVODE "include" cvode/cvode.h "lib" sundials_cvode
|
||||
ADD_COMPONENT CVODES "include" cvodes/cvodes.h "lib" sundials_cvodes
|
||||
ADD_COMPONENT ARKODE "include" arkode/arkode.h "lib" sundials_arkode
|
||||
ADD_COMPONENT KINSOL "include" kinsol/kinsol.h "lib" sundials_kinsol)
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Sets the following variables:
|
||||
# - Scotch_FOUND
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Sets the following variables
|
||||
# - SuiteSparse_FOUND
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Sets the following variables:
|
||||
# - SuperLUDist_FOUND
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - UMPIRE_FOUND
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
|
||||
"Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Find GnuTLS, searching ${GNUTLS_DIR} first. If not successful, tries the
|
||||
# standard FindGnuTLS.cmake. Defines:
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - CEED_FOUND
|
||||
# - CEED_LIBRARIES
|
||||
# - CEED_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(libCEED CEED CEED_DIR "include" ceed.h "lib" ceed
|
||||
"Paths to headers required by libCEED." "Libraries required by libCEED.")
|
||||
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Function that converts a version string of the form 'major[.minor[.patch]]' to
|
||||
# the integer ((major * 100) + minor) * 100 + patch.
|
||||
@@ -43,25 +43,6 @@ function(convert_filenames_to_full_paths NAMES)
|
||||
set(${NAMES} ${tmp_names} PARENT_SCOPE)
|
||||
endfunction()
|
||||
|
||||
# Wrapper for add_executable that calls the HIP wrapper if applicable
|
||||
macro(mfem_add_executable NAME)
|
||||
if (MFEM_USE_HIP)
|
||||
hip_add_executable(${NAME} ${ARGN})
|
||||
set_target_properties(${NAME} PROPERTIES LINKER_LANGUAGE CXX)
|
||||
else()
|
||||
add_executable(${NAME} ${ARGN})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# Wrapper for add_library that calls the HIP wrapper if applicable
|
||||
macro(mfem_add_library NAME)
|
||||
if (MFEM_USE_HIP)
|
||||
hip_add_library(${NAME} ${ARGN})
|
||||
else()
|
||||
add_library(${NAME} ${ARGN})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# Simple shortcut to add_custom_target() with option to add the target to the
|
||||
# main target.
|
||||
function(add_mfem_target TARGET_NAME ADD_TO_ALL)
|
||||
@@ -75,7 +56,7 @@ function(add_mfem_target TARGET_NAME ADD_TO_ALL)
|
||||
endfunction()
|
||||
|
||||
# Add mfem examples
|
||||
macro(add_mfem_examples EXE_SRCS)
|
||||
function(add_mfem_examples EXE_SRCS)
|
||||
set(EXE_PREFIX "")
|
||||
set(EXE_PREREQUISITE "")
|
||||
set(EXE_NEEDED_BY "")
|
||||
@@ -89,19 +70,10 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
endif()
|
||||
endif()
|
||||
foreach(SRC_FILE IN LISTS ${EXE_SRCS})
|
||||
# If CUDA is enabled, tag source files to be compiled with nvcc.
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${SRC_FILE} PROPERTIES LANGUAGE CUDA)
|
||||
elseif(MFEM_USE_HIP)
|
||||
set_source_files_properties(${SRC_FILE} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
|
||||
endif()
|
||||
|
||||
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
|
||||
|
||||
string(REPLACE ".cpp" "" EXE_NAME "${EXE_PREFIX}${SRC_FILENAME}")
|
||||
mfem_add_executable(${EXE_NAME} ${SRC_FILE})
|
||||
install(TARGETS ${EXE_NAME}
|
||||
RUNTIME DESTINATION examples)
|
||||
add_executable(${EXE_NAME} ${SRC_FILE})
|
||||
add_dependencies(${MFEM_ALL_EXAMPLES_TARGET_NAME} ${EXE_NAME})
|
||||
if (EXE_NEEDED_BY)
|
||||
add_dependencies(${EXE_NEEDED_BY} ${EXE_NAME})
|
||||
@@ -130,10 +102,10 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
endif()
|
||||
endif()
|
||||
endforeach(SRC_FILE)
|
||||
endmacro()
|
||||
endfunction()
|
||||
|
||||
# A slightly more versatile function for adding miniapps to MFEM
|
||||
macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
function(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
# Parse the input arguments looking for the things we need
|
||||
set(POSSIBLE_ARGS "MAIN" "EXTRA_SOURCES" "EXTRA_HEADERS" "EXTRA_OPTIONS" "EXTRA_DEFINES" "LIBRARIES")
|
||||
set(CURRENT_ARG)
|
||||
@@ -147,25 +119,9 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
endif()
|
||||
endforeach()
|
||||
|
||||
# If CUDA is enabled, tag source files to be compiled with nvcc.
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${MAIN_LIST} ${EXTRA_SOURCES_LIST} PROPERTIES LANGUAGE CUDA)
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.12.0)
|
||||
list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
|
||||
else()
|
||||
set(LIST_)
|
||||
foreach(item IN LISTS EXTRA_OPTIONS_LIST)
|
||||
list(APPEND LIST_ "-Xcompiler=${item}")
|
||||
endforeach()
|
||||
set(EXTRA_OPTIONS_LIST ${LIST_})
|
||||
endif()
|
||||
elseif(MFEM_USE_HIP)
|
||||
set_source_files_properties(${MAIN_LIST} ${EXTRA_SOURCES_LIST} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
|
||||
endif()
|
||||
|
||||
# Actually add the executable
|
||||
mfem_add_executable(${MFEM_EXE_NAME} ${MAIN_LIST}
|
||||
${EXTRA_SOURCES_LIST} ${EXTRA_HEADERS_LIST})
|
||||
add_executable(${MFEM_EXE_NAME} ${MAIN_LIST}
|
||||
${EXTRA_SOURCES_LIST} ${EXTRA_HEADERS_LIST})
|
||||
add_dependencies(${MFEM_ALL_MINIAPPS_TARGET_NAME} ${MFEM_EXE_NAME})
|
||||
add_dependencies(${MFEM_EXE_NAME} ${MFEM_EXEC_PREREQUISITES_TARGET_NAME})
|
||||
|
||||
@@ -218,7 +174,7 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endmacro()
|
||||
endfunction()
|
||||
|
||||
|
||||
# Auxiliary function, used in mfem_find_package().
|
||||
@@ -259,7 +215,7 @@ endfunction(mfem_find_component)
|
||||
# code snippets. Additionally, a list of required/optional/alternative
|
||||
# packages (given by ${Name}_REQUIRED_PACKAGES) are searched for and added to
|
||||
# the ${Prefix}_INCLUDE_DIRS and ${Prefix}_LIBRARIES lists. The variable
|
||||
# ${Name}_REQUIRED_LIBRARIES can be set to specify any additional libraries
|
||||
# ${Name}_REQUIRED_LIBRARIES can be set to spcecify any additional libraries
|
||||
# that are needed. This function defines the following CACHE variables:
|
||||
#
|
||||
# ${Prefix}_FOUND
|
||||
@@ -757,16 +713,15 @@ function(mfem_export_mk_files)
|
||||
set(shared_link_flag "-Wl,-rpath,")
|
||||
endif()
|
||||
|
||||
# Convert Boolean vars to YES/NO without writing the values to cache
|
||||
# Convert Boolean vars to YES/NO without writting the values to cache
|
||||
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
|
||||
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
|
||||
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_GZSTREAM MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GINKGO MFEM_USE_AMGX
|
||||
MFEM_USE_GNUTLS MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC
|
||||
MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_CONDUIT MFEM_USE_PUMI
|
||||
MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA MFEM_USE_UMPIRE MFEM_USE_SIMD
|
||||
MFEM_USE_ADIOS2 MFEM_USE_BENCHMARK MFEM_USE_PARELAG)
|
||||
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GECKO MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_MPFR MFEM_USE_SIDRE
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_MM MFEM_USE_CUDA MFEM_USE_OCCA
|
||||
MFEM_USE_RAJA)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
set(${var} YES)
|
||||
@@ -776,15 +731,8 @@ function(mfem_export_mk_files)
|
||||
endforeach()
|
||||
# TODO: Add support for MFEM_USE_CUDA=YES
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${MFEM_CXX})
|
||||
set(MFEM_CPPFLAGS "")
|
||||
get_target_property(cxx_std mfem CXX_STANDARD)
|
||||
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
|
||||
# property is set, then we need to use a variable like:
|
||||
# CMAKE_CXX11_EXTENSION_COMPILE_OPTION
|
||||
set(cxx_std_flag ${CMAKE_CXX${cxx_std}_STANDARD_COMPILE_OPTION})
|
||||
string(STRIP
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
string(STRIP "${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
|
||||
@@ -850,7 +798,7 @@ function(mfem_export_mk_files)
|
||||
string(REGEX REPLACE "^SCOREC::" "" libname ${pumilib})
|
||||
string(FIND "${pumilib}" ".a" staticlib)
|
||||
string(FIND "${pumilib}" ".so" sharedlib)
|
||||
find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFAULT_PATH)
|
||||
find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFUALT_PATH)
|
||||
if (NOT "${sharedlib}" MATCHES "-1" OR
|
||||
NOT "${staticlib}" MATCHES "-1" )
|
||||
set(MFEM_EXT_LIBS "${pumilib} ${MFEM_EXT_LIBS}")
|
||||
@@ -867,7 +815,7 @@ function(mfem_export_mk_files)
|
||||
foreach(lib ${TPL_LIBRARIES})
|
||||
get_filename_component(suffix ${lib} EXT)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*")
|
||||
if ("${lib}" MATCHES "SCOREC::.*")
|
||||
elseif (NOT "${lib}" MATCHES "SCOREC::.*" AND "${lib}" MATCHES ".*::.*")
|
||||
message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
|
||||
+17
-24
@@ -1,24 +1,27 @@
|
||||
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
|
||||
// Support out-of-source builds: if MFEM_CONFIG_FILE is defined, include it.
|
||||
// Support out-of-source builds: if MFEM_BUILD_DIR is defined, load the config
|
||||
// file MFEM_BUILD_DIR/config/_config.hpp.
|
||||
//
|
||||
// Otherwise, use the local file: _config.hpp.
|
||||
|
||||
#ifndef MFEM_CONFIG_HPP
|
||||
#define MFEM_CONFIG_HPP
|
||||
|
||||
#ifdef MFEM_CONFIG_FILE
|
||||
#include MFEM_CONFIG_FILE
|
||||
#ifdef MFEM_BUILD_DIR
|
||||
#define MFEM_QUOTE(a) #a
|
||||
#define MFEM_MAKE_PATH(x,y) MFEM_QUOTE(x/y)
|
||||
#include MFEM_MAKE_PATH(MFEM_BUILD_DIR,config/_config.hpp)
|
||||
#else
|
||||
#include "_config.hpp"
|
||||
#endif
|
||||
@@ -34,12 +37,6 @@
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
|
||||
// the following macro allows us to get M_PI and some needed functions, e.g.
|
||||
// posix_memalign(), strdup(), strerror_r().
|
||||
#ifdef __CYGWIN__
|
||||
#define _XOPEN_SOURCE 600
|
||||
#endif
|
||||
|
||||
// Check dependencies:
|
||||
|
||||
@@ -48,24 +45,20 @@
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
#error Building with SuperLU_DIST (MFEM_USE_SUPERLU=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_MUMPS
|
||||
#error Building with MUMPS (MFEM_USE_MUMPS=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_STRUMPACK
|
||||
#error Building with STRUMPACK (MFEM_USE_STRUMPACK=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_MKL_CPARDISO
|
||||
#error Building with MKL CPARDISO (MFEM_USE_MKL_CPARDISO=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_PETSC
|
||||
#error Building with PETSc (MFEM_USE_PETSC=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_SLEPC
|
||||
#error Building with SLEPc (MFEM_USE_SLEPC=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_PUMI
|
||||
#error Building with PUMI (MFEM_USE_PUMI=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
// CUDA requires the memory manager
|
||||
#if defined(MFEM_USE_CUDA) && !defined(MFEM_USE_MM)
|
||||
#error Building with CUDA (MFEM_USE_CUDA=YES) requires MFEM_USE_MM=YES
|
||||
#endif
|
||||
|
||||
#endif // MFEM_CONFIG_HPP
|
||||
|
||||
+13
-61
@@ -1,13 +1,13 @@
|
||||
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_CONFIG_HEADER
|
||||
#define MFEM_CONFIG_HEADER
|
||||
@@ -49,8 +49,8 @@
|
||||
// Throw an exception on errors.
|
||||
// #define MFEM_USE_EXCEPTIONS
|
||||
|
||||
// Enable zlib in MFEM.
|
||||
// #define MFEM_USE_ZLIB
|
||||
// Enable gzstream in MFEM.
|
||||
// #define MFEM_USE_GZSTREAM
|
||||
|
||||
// Enable backtraces for mfem_error through libunwind.
|
||||
// #define MFEM_USE_LIBUNWIND
|
||||
@@ -93,20 +93,12 @@
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU library.
|
||||
// #define MFEM_USE_SUPERLU
|
||||
// #define MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
// #define MFEM_USE_MUMPS
|
||||
// #define MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// #define MFEM_USE_AMGX
|
||||
// Enable functionality based on the Gecko library
|
||||
// #define MFEM_USE_GECKO
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library
|
||||
// #define MFEM_USE_GNUTLS
|
||||
@@ -114,12 +106,6 @@
|
||||
// Enable Sidre support
|
||||
// #define MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
// #define MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support
|
||||
// #define MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support
|
||||
// #define MFEM_USE_CONDUIT
|
||||
|
||||
@@ -129,46 +115,24 @@
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
// #define MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
// #define MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
// #define MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
// #define MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// #define MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// #define MFEM_USE_OCCA
|
||||
|
||||
// Enable functionality based on the libCEED library.
|
||||
// #define MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
// #define MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// #define MFEM_USE_UMPIRE
|
||||
|
||||
// Enable IO functionality based on the ADIOS2 library.
|
||||
// #define MFEM_USE_ADIOS2
|
||||
// Enable MFEM's internal Memory Manager (needed e.g. for MFEM_USE_CUDA)
|
||||
// #define MFEM_USE_MM
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
// #define MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
@@ -177,16 +141,4 @@
|
||||
// library.
|
||||
// #define MFEM_USE_SIMMETRIX
|
||||
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
// #define MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation
|
||||
// #define MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
// #define MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// #define MFEM_USE_BENCHMARK
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
+9
-27
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Variables corresponding to defines in config.hpp (YES, NO, or value)
|
||||
MFEM_VERSION = @MFEM_VERSION@
|
||||
@@ -20,7 +20,7 @@ MFEM_USE_METIS = @MFEM_USE_METIS@
|
||||
MFEM_USE_METIS_5 = @MFEM_USE_METIS_5@
|
||||
MFEM_DEBUG = @MFEM_DEBUG@
|
||||
MFEM_USE_EXCEPTIONS = @MFEM_USE_EXCEPTIONS@
|
||||
MFEM_USE_ZLIB = @MFEM_USE_ZLIB@
|
||||
MFEM_USE_GZSTREAM = @MFEM_USE_GZSTREAM@
|
||||
MFEM_USE_LIBUNWIND = @MFEM_USE_LIBUNWIND@
|
||||
MFEM_USE_LAPACK = @MFEM_USE_LAPACK@
|
||||
MFEM_THREAD_SAFE = @MFEM_THREAD_SAFE@
|
||||
@@ -32,40 +32,22 @@ MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
|
||||
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
|
||||
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
|
||||
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
|
||||
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
|
||||
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
|
||||
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
|
||||
MFEM_USE_AMGX = @MFEM_USE_AMGX@
|
||||
MFEM_USE_GECKO = @MFEM_USE_GECKO@
|
||||
MFEM_USE_GNUTLS = @MFEM_USE_GNUTLS@
|
||||
MFEM_USE_NETCDF = @MFEM_USE_NETCDF@
|
||||
MFEM_USE_PETSC = @MFEM_USE_PETSC@
|
||||
MFEM_USE_SLEPC = @MFEM_USE_SLEPC@
|
||||
MFEM_USE_MPFR = @MFEM_USE_MPFR@
|
||||
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_FMS = @MFEM_USE_FMS@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_PUMI = @MFEM_USE_PUMI@
|
||||
MFEM_USE_HIOP = @MFEM_USE_HIOP@
|
||||
MFEM_USE_GSLIB = @MFEM_USE_GSLIB@
|
||||
MFEM_USE_CUDA = @MFEM_USE_CUDA@
|
||||
MFEM_USE_HIP = @MFEM_USE_HIP@
|
||||
MFEM_USE_RAJA = @MFEM_USE_RAJA@
|
||||
MFEM_USE_OCCA = @MFEM_USE_OCCA@
|
||||
MFEM_USE_CEED = @MFEM_USE_CEED@
|
||||
MFEM_USE_CALIPER = @MFEM_USE_CALIPER@
|
||||
MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
|
||||
MFEM_USE_SIMD = @MFEM_USE_SIMD@
|
||||
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
|
||||
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
|
||||
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
|
||||
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
|
||||
MFEM_USE_MM = @MFEM_USE_MM@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
MFEM_CXX = @MFEM_CXX@
|
||||
MFEM_HOST_CXX = @MFEM_HOST_CXX@
|
||||
MFEM_CPPFLAGS = @MFEM_CPPFLAGS@
|
||||
MFEM_CXXFLAGS = @MFEM_CXXFLAGS@
|
||||
MFEM_TPLFLAGS = @MFEM_TPLFLAGS@
|
||||
|
||||
+15
-94
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# See the file INSTALL for description of the configuration options.
|
||||
|
||||
@@ -22,7 +22,7 @@ endif()
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
|
||||
option(MFEM_USE_ZLIB "Enable zlib for compressed data streams." OFF)
|
||||
option(MFEM_USE_GZSTREAM "Enable gzstream for compressed data streams." OFF)
|
||||
option(MFEM_USE_LIBUNWIND "Enable backtrace for errors." OFF)
|
||||
option(MFEM_USE_LAPACK "Enable LAPACK usage" OFF)
|
||||
option(MFEM_THREAD_SAFE "Enable thread safety" OFF)
|
||||
@@ -33,40 +33,19 @@ option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
|
||||
option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
|
||||
option(MFEM_USE_SUITESPARSE "Enable SuiteSparse usage" OFF)
|
||||
option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
|
||||
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
|
||||
option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
|
||||
option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
|
||||
option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
|
||||
option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
|
||||
option(MFEM_USE_GECKO "Enable GECKO usage" OFF)
|
||||
option(MFEM_USE_GNUTLS "Enable GNUTLS usage" OFF)
|
||||
option(MFEM_USE_GSLIB "Enable GSLIB usage" OFF)
|
||||
option(MFEM_USE_NETCDF "Enable NETCDF usage" OFF)
|
||||
option(MFEM_USE_PETSC "Enable PETSc support." OFF)
|
||||
option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
|
||||
option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
|
||||
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
|
||||
option(MFEM_USE_FMS "Enable FMS usage" OFF)
|
||||
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
|
||||
option(MFEM_USE_PUMI "Enable PUMI" OFF)
|
||||
option(MFEM_USE_HIOP "Enable HiOp" OFF)
|
||||
option(MFEM_USE_MM "Enable MFEM's memory manager" OFF)
|
||||
option(MFEM_USE_CUDA "Enable CUDA" OFF)
|
||||
option(MFEM_USE_OCCA "Enable OCCA" OFF)
|
||||
option(MFEM_USE_RAJA "Enable RAJA" OFF)
|
||||
option(MFEM_USE_CEED "Enable CEED" OFF)
|
||||
option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
|
||||
option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
|
||||
option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
|
||||
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
|
||||
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
|
||||
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
|
||||
|
||||
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
|
||||
# set(MFEM_MPIEXEC "mpirun" CACHE STRING "Command for running MPI tests")
|
||||
# set(MFEM_MPIEXEC_NP "-np" CACHE STRING
|
||||
# "Flag for setting the number of MPI tasks")
|
||||
|
||||
set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
|
||||
|
||||
@@ -78,7 +57,6 @@ set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
|
||||
option(MFEM_ENABLE_TESTING "Enable the ctest framework for testing" ON)
|
||||
option(MFEM_ENABLE_EXAMPLES "Build all of the examples" OFF)
|
||||
option(MFEM_ENABLE_MINIAPPS "Build all of the miniapps" OFF)
|
||||
option(MFEM_ENABLE_GOOGLE_BENCHMARKS "Build all of the Google benchmarks" OFF)
|
||||
|
||||
# Setting CXX/MPICXX on the command line or in user.cmake will overwrite the
|
||||
# autodetected C++ compiler.
|
||||
@@ -88,9 +66,6 @@ option(MFEM_ENABLE_GOOGLE_BENCHMARKS "Build all of the Google benchmarks" OFF)
|
||||
# Set the target CUDA architecture
|
||||
set(CUDA_ARCH "sm_60" CACHE STRING "Target CUDA architecture.")
|
||||
|
||||
# Set the target HIP architecture
|
||||
set(HIP_ARCH "gfx900" CACHE STRING "Target HIP architecture.")
|
||||
|
||||
set(MFEM_DIR ${CMAKE_CURRENT_SOURCE_DIR})
|
||||
|
||||
# The *_DIR paths below will be the first place searched for the corresponding
|
||||
@@ -102,19 +77,12 @@ set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
|
||||
# If hypre was compiled to depend on BLAS and LAPACK:
|
||||
# set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
|
||||
# "Packages that HYPRE depends on.")
|
||||
if (MFEM_USE_CUDA)
|
||||
# This is only necessary when hypre is built with cuda:
|
||||
set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
|
||||
"Libraries that HYPRE depends on.")
|
||||
endif()
|
||||
|
||||
set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
|
||||
|
||||
set(LIBUNWIND_DIR "" CACHE PATH "Path to Libunwind.")
|
||||
|
||||
# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
|
||||
# and modify cmake variables for hypre for sundials
|
||||
set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
|
||||
set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-3.0.0" CACHE PATH
|
||||
"Path to the SUNDIALS library.")
|
||||
# The following may be necessary, if SUNDIALS was built with KLU:
|
||||
# set(SUNDIALS_REQUIRED_PACKAGES "SuiteSparse/KLU/AMD/BTF/COLAMD/config"
|
||||
@@ -133,21 +101,12 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
|
||||
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
|
||||
"Additional packages required by ParMETIS.")
|
||||
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_5.1.0" CACHE PATH
|
||||
"Path to the SuperLU_DIST library.")
|
||||
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
"Additional packages required by SuperLU_DIST.")
|
||||
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
|
||||
"Path to the MUMPS library.")
|
||||
# Packages required by MUMPS, depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
|
||||
"Additional packages required by MUMPS.")
|
||||
# If the MPI package does not find all required Fortran libraries:
|
||||
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
# "Additional libraries required by MUMPS.")
|
||||
|
||||
set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
|
||||
"Path to the STRUMPACK library.")
|
||||
# STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
|
||||
@@ -176,78 +135,40 @@ set(ScaLAPACK_TARGET_NAMES scalapack)
|
||||
# set(ScaLAPACK_TARGET_FORCE)
|
||||
# set(ScaLAPACK_IMPORT_CONFIG DEBUG)
|
||||
|
||||
set(Ginkgo_DIR "${MFEM_DIR}/../ginkgo" CACHE PATH "Path to the Ginkgo library.")
|
||||
|
||||
set(AMGX_DIR "${MFEM_DIR}/../amgx" CACHE PATH "Path to AmgX")
|
||||
set(GECKO_DIR "${MFEM_DIR}/../gecko" CACHE PATH "Path to the Gecko library.")
|
||||
|
||||
set(GNUTLS_DIR "" CACHE PATH "Path to the GnuTLS library.")
|
||||
|
||||
set(GSLIB_DIR "" CACHE PATH "Path to the GSLIB library.")
|
||||
|
||||
set(NETCDF_DIR "" CACHE PATH "Path to the NetCDF library.")
|
||||
set(NetCDF_REQUIRED_PACKAGES "HDF5/C/HL" CACHE STRING
|
||||
# May need to add "HDF5" as requirement.
|
||||
set(NetCDF_REQUIRED_PACKAGES "" CACHE STRING
|
||||
"Additional packages required by NetCDF.")
|
||||
|
||||
set(PETSC_DIR "${MFEM_DIR}/../petsc" CACHE PATH
|
||||
"Path to the PETSc main directory.")
|
||||
set(PETSC_ARCH "arch-linux2-c-debug" CACHE STRING "PETSc build architecture.")
|
||||
|
||||
set(SLEPC_DIR "${MFEM_DIR}/../slepc" CACHE PATH
|
||||
"Path to the SLEPc main directory.")
|
||||
set(SLEPC_ARCH "arch-linux2-c-debug" CACHE STRING "SLEPC build architecture.")
|
||||
|
||||
set(MPFR_DIR "" CACHE PATH "Path to the MPFR library.")
|
||||
|
||||
set(FMS_DIR "${MFEM_DIR}/../fms" CACHE PATH
|
||||
"Path to the FMS library.")
|
||||
# If FMS is built with Conduit:
|
||||
# set(FMS_REQUIRED_PACKAGES "Conduit/relay" CACHE STRING
|
||||
# "Additional packages required by FMS.")
|
||||
|
||||
set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
|
||||
"Path to the Conduit library.")
|
||||
|
||||
set(AXOM_DIR "${MFEM_DIR}/../axom" CACHE PATH "Path to the Axom library.")
|
||||
# May need to add "Boost" as requirement.
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/relay/blueprint" CACHE STRING
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/relay" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
|
||||
set(PUMI_DIR "${MFEM_DIR}/../pumi-2.1.0" CACHE STRING
|
||||
"Directory where PUMI is installed")
|
||||
|
||||
set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
|
||||
"Directory where HiOp is installed")
|
||||
set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
|
||||
"Packages that HiOp depends on.")
|
||||
|
||||
set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
|
||||
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
|
||||
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
|
||||
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
|
||||
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
|
||||
"Path to Google Benchmark")
|
||||
|
||||
# Provide paths, since ParELAG is dependent on MFEM and MFEM needs to be
|
||||
# compiled (or at least cmake needs to succeed) before compiling ParELAG.
|
||||
set(PARELAG_DIR "${MFEM_DIR}/../parelag" CACHE PATH "Path to ParELAG")
|
||||
set(PARELAG_INCLUDE_DIRS "${PARELAG_DIR}/src;${PARELAG_DIR}/build/src" CACHE
|
||||
STRING "Path to ParELAG headers.")
|
||||
set(PARELAG_LIBRARIES "${PARELAG_DIR}/build/src/libParELAG.a" CACHE STRING
|
||||
"The ParELAG library.")
|
||||
|
||||
set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
|
||||
set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
|
||||
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
|
||||
set(LAPACK_LIBRARIES "" CACHE STRING "The LAPACK library.")
|
||||
|
||||
set(CODIPACK_INCLUDE_DIRS "${MFEM_DIR}/../CoDiPack/inlude" CACHE STRING "Path to CoDiPack headers.")
|
||||
set(CODIPACK_LIBRARIES "")
|
||||
|
||||
# Some useful variables:
|
||||
set(CMAKE_SKIP_PREPROCESSED_SOURCE_RULES ON) # Skip *.i rules
|
||||
set(CMAKE_SKIP_ASSEMBLY_SOURCE_RULES ON) # Skip *.s rules
|
||||
|
||||
+43
-210
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# This file describes the default MFEM build options.
|
||||
#
|
||||
@@ -18,9 +18,6 @@
|
||||
# Some choices below are based on the OS type:
|
||||
NOTMAC := $(subst Darwin,,$(shell uname -s))
|
||||
|
||||
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
|
||||
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
|
||||
|
||||
CXX = g++
|
||||
MPICXX = mpicxx
|
||||
|
||||
@@ -49,22 +46,9 @@ CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
|
||||
CUDA_XCOMPILER = -Xcompiler=
|
||||
CUDA_XLINKER = -Xlinker=
|
||||
|
||||
# HIP configuration options
|
||||
HIP_CXX = hipcc
|
||||
# The HIP_ARCH option specifies the AMD GPU processor, similar to CUDA_ARCH. For
|
||||
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
|
||||
# gfx900, gfx1010, etc.
|
||||
HIP_ARCH = gfx900
|
||||
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
|
||||
HIP_XCOMPILER =
|
||||
HIP_XLINKER = -Wl,
|
||||
|
||||
# Flags for generating dependencies.
|
||||
DEP_FLAGS = -MM -MT
|
||||
|
||||
ifneq ($(NOTMAC),)
|
||||
AR = ar
|
||||
ARFLAGS = crv
|
||||
ARFLAGS = cruv
|
||||
RANLIB = ranlib
|
||||
PICFLAG = $(XCOMPILER)-fPIC
|
||||
SO_EXT = so
|
||||
@@ -76,7 +60,7 @@ ifneq ($(NOTMAC),)
|
||||
else
|
||||
# Silence "has no symbols" warnings on Mac OS X
|
||||
AR = ar
|
||||
ARFLAGS = Scrv
|
||||
ARFLAGS = Scruv
|
||||
RANLIB = ranlib -no_warning_for_no_symbols
|
||||
PICFLAG = $(XCOMPILER)-fPIC
|
||||
SO_EXT = dylib
|
||||
@@ -89,9 +73,6 @@ else
|
||||
BUILD_RPATH = $(XLINKER)-undefined,dynamic_lookup
|
||||
INSTALL_SOFLAGS = $(subst $1 ,,$(call MAKE_SOFLAGS,$(MFEM_LIB_DIR)))
|
||||
INSTALL_RPATH = $(XLINKER)-undefined,dynamic_lookup
|
||||
# Silence unused command line argument warnings when generating dependencies
|
||||
# with mpicxx and clang
|
||||
DEP_FLAGS := -Wno-unused-command-line-argument $(DEP_FLAGS)
|
||||
endif
|
||||
|
||||
# Set CXXFLAGS to overwrite the default selection of DEBUG_FLAGS/OPTIM_FLAGS
|
||||
@@ -119,7 +100,7 @@ MFEM_USE_METIS = $(MFEM_USE_MPI)
|
||||
MFEM_USE_METIS_5 = NO
|
||||
MFEM_DEBUG = NO
|
||||
MFEM_USE_EXCEPTIONS = NO
|
||||
MFEM_USE_ZLIB = NO
|
||||
MFEM_USE_GZSTREAM = NO
|
||||
MFEM_USE_LIBUNWIND = NO
|
||||
MFEM_USE_LAPACK = NO
|
||||
MFEM_THREAD_SAFE = NO
|
||||
@@ -131,52 +112,25 @@ MFEM_USE_SUNDIALS = NO
|
||||
MFEM_USE_MESQUITE = NO
|
||||
MFEM_USE_SUITESPARSE = NO
|
||||
MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_SUPERLU5 = NO
|
||||
MFEM_USE_MUMPS = NO
|
||||
MFEM_USE_STRUMPACK = NO
|
||||
MFEM_USE_GINKGO = NO
|
||||
MFEM_USE_AMGX = NO
|
||||
MFEM_USE_GECKO = NO
|
||||
MFEM_USE_GNUTLS = NO
|
||||
MFEM_USE_NETCDF = NO
|
||||
MFEM_USE_PETSC = NO
|
||||
MFEM_USE_SLEPC = NO
|
||||
MFEM_USE_MPFR = NO
|
||||
MFEM_USE_SIDRE = NO
|
||||
MFEM_USE_FMS = NO
|
||||
MFEM_USE_CONDUIT = NO
|
||||
MFEM_USE_PUMI = NO
|
||||
MFEM_USE_HIOP = NO
|
||||
MFEM_USE_GSLIB = NO
|
||||
MFEM_USE_CUDA = NO
|
||||
MFEM_USE_HIP = NO
|
||||
MFEM_USE_RAJA = NO
|
||||
MFEM_USE_OCCA = NO
|
||||
MFEM_USE_CEED = NO
|
||||
MFEM_USE_CALIPER = NO
|
||||
MFEM_USE_UMPIRE = NO
|
||||
MFEM_USE_SIMD = NO
|
||||
MFEM_USE_ADIOS2 = NO
|
||||
MFEM_USE_MKL_CPARDISO = NO
|
||||
MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
MFEM_USE_BENCHMARK = NO
|
||||
MFEM_USE_PARELAG = NO
|
||||
|
||||
# MPI library compile and link flags
|
||||
# These settings are used only when building MFEM with MPI + HIP
|
||||
ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
|
||||
# We determine MPI_DIR assuming $(MPICXX) is in $(MPI_DIR)/bin
|
||||
MPI_DIR := $(patsubst %/,%,$(dir $(shell which $(MPICXX))))
|
||||
MPI_DIR := $(patsubst %/,%,$(dir $(MPI_DIR)))
|
||||
MPI_OPT = -I$(MPI_DIR)/include
|
||||
MPI_LIB = -L$(MPI_DIR)/lib $(XLINKER)-rpath,$(MPI_DIR)/lib -lmpi
|
||||
endif
|
||||
MFEM_USE_MM = NO
|
||||
|
||||
# Compile and link options for zlib.
|
||||
ZLIB_DIR =
|
||||
ZLIB_OPT = $(if $(ZLIB_DIR),-I$(ZLIB_DIR)/include)
|
||||
ZLIB_LIB = $(if $(ZLIB_DIR),$(ZLIB_RPATH) -L$(ZLIB_DIR)/lib ,)-lz
|
||||
ZLIB_RPATH = $(XLINKER)-rpath,$(ZLIB_DIR)/lib
|
||||
ZLIB_RPATH = -Wl,-rpath,$(ZLIB_DIR)/lib
|
||||
|
||||
LIBUNWIND_OPT = -g
|
||||
LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
|
||||
@@ -185,13 +139,9 @@ LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
|
||||
HYPRE_DIR = @MFEM_DIR@/../hypre/src/hypre
|
||||
HYPRE_OPT = -I$(HYPRE_DIR)/include
|
||||
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
|
||||
ifeq (YES,$(MFEM_USE_CUDA))
|
||||
# This is only necessary when hypre is built with cuda:
|
||||
HYPRE_LIB += -lcusparse -lcurand
|
||||
endif
|
||||
|
||||
# METIS library configuration
|
||||
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK)$(MFEM_USE_MUMPS),NONONO)
|
||||
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK),NONO)
|
||||
ifeq ($(MFEM_USE_METIS_5),NO)
|
||||
METIS_DIR = @MFEM_DIR@/../metis-4.0
|
||||
METIS_OPT =
|
||||
@@ -224,19 +174,13 @@ OPENMP_LIB =
|
||||
POSIX_CLOCKS_LIB = -lrt
|
||||
|
||||
# SUNDIALS library configuration
|
||||
# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
|
||||
# and modify cmake variables for hypre for sundials
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
|
||||
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
|
||||
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-3.0.0
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIB = -Wl,-rpath,$(SUNDIALS_DIR)/lib -L$(SUNDIALS_DIR)/lib\
|
||||
-lsundials_arkode -lsundials_cvode -lsundials_nvecserial -lsundials_kinsol
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
|
||||
endif
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
SUNDIALS_LIB += -lsundials_nveccuda
|
||||
SUNDIALS_LIB += -lsundials_nvecparhyp -lsundials_nvecparallel
|
||||
endif
|
||||
# If SUNDIALS was built with KLU:
|
||||
# MFEM_USE_SUITESPARSE = YES
|
||||
@@ -250,22 +194,14 @@ MESQUITE_LIB = -L$(MESQUITE_DIR)/lib -lmesquite
|
||||
LIB_RT = $(if $(NOTMAC),-lrt,)
|
||||
SUITESPARSE_DIR = @MFEM_DIR@/../SuiteSparse
|
||||
SUITESPARSE_OPT = -I$(SUITESPARSE_DIR)/include
|
||||
SUITESPARSE_LIB = $(XLINKER)-rpath,$(SUITESPARSE_DIR)/lib\
|
||||
-L$(SUITESPARSE_DIR)/lib -lklu -lbtf -lumfpack -lcholmod -lcolamd -lamd -lcamd\
|
||||
-lccolamd -lsuitesparseconfig $(LIB_RT) $(METIS_LIB) $(LAPACK_LIB)
|
||||
SUITESPARSE_LIB = -Wl,-rpath,$(SUITESPARSE_DIR)/lib -L$(SUITESPARSE_DIR)/lib\
|
||||
-lklu -lbtf -lumfpack -lcholmod -lcolamd -lamd -lcamd -lccolamd\
|
||||
-lsuitesparseconfig $(LIB_RT) $(METIS_LIB) $(LAPACK_LIB)
|
||||
|
||||
# SuperLU library configuration
|
||||
ifeq ($(MFEM_USE_SUPERLU5),YES)
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
|
||||
-lsuperlu_dist_5.1.0
|
||||
else
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
|
||||
-lsuperlu_dist -lblas
|
||||
endif
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/SRC
|
||||
SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/SRC -L$(SUPERLU_DIR)/SRC -lsuperlu_dist
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
# STRUMPACK >= v2.2.0)
|
||||
@@ -274,12 +210,12 @@ SCOTCH_OPT = -I$(SCOTCH_DIR)/include
|
||||
SCOTCH_LIB = -L$(SCOTCH_DIR)/lib -lptscotch -lptscotcherr -lscotch -lscotcherr\
|
||||
-lpthread
|
||||
|
||||
# SCALAPACK library configuration (required by STRUMPACK and MUMPS)
|
||||
# SCALAPACK library configuration (required by STRUMPACK)
|
||||
SCALAPACK_DIR = @MFEM_DIR@/../scalapack-2.0.2
|
||||
SCALAPACK_OPT = -I$(SCALAPACK_DIR)/SRC
|
||||
SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
|
||||
|
||||
# MPI Fortran library, needed e.g. by STRUMPACK or MUMPS
|
||||
# MPI Fortran library, needed e.g. by STRUMPACK
|
||||
# MPICH:
|
||||
MPI_FORTRAN_LIB = -lmpifort
|
||||
# OpenMPI:
|
||||
@@ -287,12 +223,6 @@ MPI_FORTRAN_LIB = -lmpifort
|
||||
# Additional Fortan library:
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
|
||||
# STRUMPACK library configuration
|
||||
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
|
||||
STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
@@ -301,30 +231,10 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
|
||||
$(SCOTCH_LIB) $(SCALAPACK_LIB)
|
||||
|
||||
# Ginkgo library configuration (currently not needed)
|
||||
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
|
||||
GINKGO_BUILD_TYPE=Release
|
||||
ifeq ($(MFEM_USE_GINKGO),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
GINKGO_OPT = -isystem $(GINKGO_DIR)/include
|
||||
GINKGO_LIB_DIR = $(sort $(dir $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
|
||||
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*d.a $(GINKGO_DIR)/lib*/libginkgo*d.so $(GINKGO_DIR)/lib*/libginkgo*d.dylib $(GINKGO_DIR)/lib*/libginkgo*d.dll)))
|
||||
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
|
||||
ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
|
||||
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
|
||||
ifeq ($(GINKGO_BUILD_TYPE),Debug)
|
||||
ifneq (,$(ALL_GINKGO_LIBS_DEBUG))
|
||||
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_DEBUG))
|
||||
endif
|
||||
else
|
||||
endif
|
||||
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LIB_DIR) -L$(GINKGO_LIB_DIR) $(GINKGO_LINK)
|
||||
|
||||
# AmgX library configuration
|
||||
AMGX_DIR = @MFEM_DIR@/../amgx
|
||||
AMGX_OPT = -I$(AMGX_DIR)/include
|
||||
AMGX_LIB = -lcusparse -lcusolver -lcublas -lnvToolsExt -L$(AMGX_DIR)/lib -lamgx
|
||||
# Gecko library configuration
|
||||
GECKO_DIR = @MFEM_DIR@/../gecko
|
||||
GECKO_OPT = -I$(GECKO_DIR)/inc
|
||||
GECKO_LIB = -L$(GECKO_DIR)/lib -lgecko
|
||||
|
||||
# GnuTLS library configuration
|
||||
GNUTLS_OPT =
|
||||
@@ -334,8 +244,8 @@ GNUTLS_LIB = -lgnutls
|
||||
NETCDF_DIR = $(HOME)/local
|
||||
HDF5_DIR = $(HOME)/local
|
||||
NETCDF_OPT = -I$(NETCDF_DIR)/include -I$(HDF5_DIR)/include $(ZLIB_OPT)
|
||||
NETCDF_LIB = $(XLINKER)-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
|
||||
$(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
|
||||
NETCDF_LIB = -Wl,-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
|
||||
-Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
|
||||
-lnetcdf -lhdf5_hl -lhdf5 $(ZLIB_LIB)
|
||||
|
||||
# PETSc library configuration (version greater or equal to 3.8 or the dev branch)
|
||||
@@ -347,41 +257,20 @@ PETSC_INC_VAR = PETSC_CC_INCLUDES
|
||||
PETSC_LIB_VAR = PETSC_EXTERNAL_LIB_BASIC
|
||||
ifeq ($(PETSC_FOUND),YES)
|
||||
PETSC_OPT := $(shell sed -n "s/$(PETSC_INC_VAR) = *//p" $(PETSC_VARS))
|
||||
PETSC_DEP := $(shell sed -n "s/$(PETSC_LIB_VAR) = *//p" $(PETSC_VARS))
|
||||
PETSC_LIB = $(XLINKER)-rpath,$(abspath $(PETSC_DIR))/lib\
|
||||
-L$(abspath $(PETSC_DIR))/lib -lpetsc\
|
||||
$(subst $(CXX_XLINKER),$(XLINKER),$(PETSC_DEP))
|
||||
endif
|
||||
|
||||
SLEPC_DIR := $(MFEM_DIR)/../slepc
|
||||
SLEPC_VARS := $(SLEPC_DIR)/lib/slepc/conf/slepc_variables
|
||||
SLEPC_FOUND := $(if $(wildcard $(SLEPC_VARS)),YES,)
|
||||
SLEPC_INC_VAR = SLEPC_INCLUDE
|
||||
SLEPC_LIB_VAR = SLEPC_EXTERNAL_LIB
|
||||
ifeq ($(SLEPC_FOUND),YES)
|
||||
SLEPC_OPT := $(shell sed -n "s/$(SLEPC_INC_VAR) *= *//p" $(SLEPC_VARS))
|
||||
# Some additional external libraries might be defined in this file
|
||||
-include ${SLEPC_DIR}/${PETSC_ARCH}/lib/slepc/conf/slepcvariables
|
||||
SLEPC_DEP := $(shell sed -n "s/$(SLEPC_LIB_VAR) *= *//p" $(SLEPC_VARS))
|
||||
SLEPC_LIB = $(XLINKER)-rpath,$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib\
|
||||
-L$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib -lslepc\
|
||||
$(subst $(CXX_XLINKER),$(XLINKER),$(SLEPC_DEP))
|
||||
PETSC_LIB := $(shell sed -n "s/$(PETSC_LIB_VAR) = *//p" $(PETSC_VARS))
|
||||
PETSC_LIB := -Wl,-rpath,$(abspath $(PETSC_DIR))/lib\
|
||||
-L$(abspath $(PETSC_DIR))/lib -lpetsc $(PETSC_LIB)
|
||||
endif
|
||||
|
||||
# MPFR library configuration
|
||||
MPFR_OPT =
|
||||
MPFR_LIB = -lmpfr
|
||||
|
||||
# FMS and required libraries configuration
|
||||
FMS_DIR = $(MFEM_DIR)/../fms
|
||||
FMS_OPT = -I$(FMS_DIR)/include
|
||||
FMS_LIB = -Wl,-rpath,$(FMS_DIR)/lib -L$(FMS_DIR)/lib -lfms
|
||||
|
||||
# Conduit and required libraries configuration
|
||||
CONDUIT_DIR = @MFEM_DIR@/../conduit
|
||||
CONDUIT_OPT = -I$(CONDUIT_DIR)/include/conduit
|
||||
CONDUIT_LIB = \
|
||||
$(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-Wl,-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-lconduit -lconduit_relay -lconduit_blueprint -ldl
|
||||
|
||||
# Check if Conduit was built with hdf5 support, by looking
|
||||
@@ -389,7 +278,7 @@ CONDUIT_LIB = \
|
||||
CONDUIT_HDF5_HEADER=$(CONDUIT_DIR)/include/conduit/conduit_relay_hdf5.hpp
|
||||
ifneq (,$(wildcard $(CONDUIT_HDF5_HEADER)))
|
||||
CONDUIT_OPT += -I$(HDF5_DIR)/include
|
||||
CONDUIT_LIB += $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
CONDUIT_LIB += -Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-lhdf5 $(ZLIB_LIB)
|
||||
endif
|
||||
|
||||
@@ -399,10 +288,10 @@ SIDRE_DIR = @MFEM_DIR@/../axom
|
||||
SIDRE_OPT = -I$(SIDRE_DIR)/include -I$(CONDUIT_DIR)/include/conduit\
|
||||
-I$(HDF5_DIR)/include
|
||||
SIDRE_LIB = \
|
||||
$(XLINKER)-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
|
||||
$(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
$(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-laxom -lconduit -lconduit_relay -lconduit_blueprint -lhdf5 $(ZLIB_LIB) -ldl
|
||||
-Wl,-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
|
||||
-Wl,-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-laxom -lconduit -lconduit_relay -lhdf5 $(ZLIB_LIB) -ldl
|
||||
|
||||
# PUMI
|
||||
# Note that PUMI_DIR is needed -- it is used to check for gmi_sim.h
|
||||
@@ -411,79 +300,23 @@ PUMI_OPT = -I$(PUMI_DIR)/include
|
||||
PUMI_LIB = -L$(PUMI_DIR)/lib -lpumi -lcrv -lma -lmds -lapf -lpcu -lgmi -lparma\
|
||||
-llion -lmth -lapf_zoltan -lspr
|
||||
|
||||
# HIOP
|
||||
HIOP_DIR = @MFEM_DIR@/../hiop/install
|
||||
HIOP_OPT = -I$(HIOP_DIR)/include
|
||||
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
|
||||
|
||||
# CoDiPack
|
||||
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
|
||||
CODIPACK_OPT = -I$(CODIPACK_DIR)
|
||||
CODIPACK_LIB =
|
||||
|
||||
# GSLIB library
|
||||
GSLIB_DIR = @MFEM_DIR@/../gslib/build
|
||||
GSLIB_OPT = -I$(GSLIB_DIR)/include
|
||||
GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
|
||||
|
||||
# CUDA library configuration
|
||||
# CUDA library configuration (currently not needed)
|
||||
CUDA_OPT =
|
||||
CUDA_LIB = -lcusparse
|
||||
|
||||
# HIP library configuration (currently not needed)
|
||||
HIP_OPT =
|
||||
HIP_LIB =
|
||||
CUDA_LIB =
|
||||
|
||||
# OCCA library configuration
|
||||
OCCA_DIR = @MFEM_DIR@/../occa
|
||||
OCCA_OPT = -I$(OCCA_DIR)/include
|
||||
OCCA_LIB = $(XLINKER)-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
|
||||
|
||||
# CALIPER library configuration
|
||||
CALIPER_DIR = @MFEM_DIR@/../caliper
|
||||
CALIPER_OPT = -I$(CALIPER_DIR)/include
|
||||
CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib64 -lcaliper
|
||||
|
||||
# BENCHMARK library configuration
|
||||
BENCHMARK_DIR = @MFEM_DIR@/../google-benchmark
|
||||
BENCHMARK_OPT = -I$(BENCHMARK_DIR)/include
|
||||
BENCHMARK_LIB = -L$(BENCHMARK_DIR)/lib -lbenchmark -lpthread
|
||||
|
||||
# libCEED library configuration
|
||||
CEED_DIR ?= @MFEM_DIR@/../libCEED
|
||||
CEED_OPT = -I$(CEED_DIR)/include
|
||||
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
|
||||
|
||||
# RAJA library configuration
|
||||
RAJA_DIR = @MFEM_DIR@/../raja
|
||||
RAJA_OPT = -I$(RAJA_DIR)/include
|
||||
ifdef CUB_DIR
|
||||
RAJA_OPT += -I$(CUB_DIR)
|
||||
endif
|
||||
ifdef CAMP_DIR
|
||||
RAJA_OPT += -I$(CAMP_DIR)/include
|
||||
endif
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
|
||||
|
||||
# UMPIRE library configuration
|
||||
UMPIRE_DIR = @MFEM_DIR@/../umpire
|
||||
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
|
||||
|
||||
# MKL CPardiso library configuration
|
||||
MKL_CPARDISO_DIR ?=
|
||||
MKL_MPI_WRAPPER ?= mkl_blacs_mpich_lp64
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_CPARDISO_OPT = -I$(MKL_CPARDISO_DIR)/include
|
||||
MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# PARELAG library configuration
|
||||
PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
|
||||
# If YES, enable some informational messages
|
||||
VERBOSE = NO
|
||||
|
||||
|
||||
@@ -1,13 +1,13 @@
|
||||
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "HYPRE_config.h"
|
||||
#include <cstdio>
|
||||
|
||||
@@ -1,33 +0,0 @@
|
||||
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dmumps_c.h"
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
// Macros to expand a macro as a string
|
||||
#define STR_EXPAND(s) #s
|
||||
#define STR(s) STR_EXPAND(s)
|
||||
|
||||
int main()
|
||||
{
|
||||
#ifdef MUMPS_VERSION
|
||||
const char *ptr = STR(MUMPS_VERSION);
|
||||
std::string s(ptr);
|
||||
s.erase(std::remove(s.begin(), s.end(), '"'), s.end());
|
||||
s.erase(std::remove(s.begin(), s.end(), '.'), s.end());
|
||||
std::cout << s << "\n";
|
||||
return 0;
|
||||
#else
|
||||
return -1;
|
||||
#endif
|
||||
}
|
||||
@@ -1,41 +0,0 @@
|
||||
Finite Element Discretization Library
|
||||
__
|
||||
_ __ ___ / _| ___ _ __ ___
|
||||
| '_ ` _ \ | |_ / _ \| '_ ` _ \
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
|
||||
|
||||
This directory contains recommended git hooks, which are scripts that can be
|
||||
used to improve your development experience with MFEM:
|
||||
|
||||
### The hooks
|
||||
|
||||
* `pre-commit` is a hook that will be applied before each commit and run
|
||||
`astyle` on the code. This will ensure that your changes comply with the MFEM
|
||||
code styling guidelines.
|
||||
|
||||
* `pre-push` is a hook that will be applied before each push to run a quick set
|
||||
of tests that verify that your files headers are in compliance, and that you did
|
||||
not add any large files to the repo.
|
||||
|
||||
### Setup
|
||||
|
||||
To setup the git hooks, run `make hooks`, which creates symlinks to the hooks in
|
||||
the `.git/hooks` directory. Individual hooks can be enabled by manually creating
|
||||
symlinks.
|
||||
|
||||
(You may also copy the scripts directly and customize them further, but this way
|
||||
you may miss additional updates in the future.)
|
||||
|
||||
### Failures
|
||||
|
||||
The `branch-history` check can fail in some cases when the history is OK. For
|
||||
example, when a large number of files were modified for a legitimate reason, or
|
||||
when a picture was added for documentation.
|
||||
|
||||
If that is the case, make sure the failure is indeed justified, and rerun the
|
||||
push command with the `--no-verify` option. This will skip the hooks, allowing
|
||||
you to push those changes.
|
||||
@@ -1,4 +0,0 @@
|
||||
#!/bin/sh
|
||||
|
||||
# Apply automated code formatting
|
||||
make -C $(git rev-parse --show-toplevel) style
|
||||
@@ -1,107 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
option=${1:-""}
|
||||
|
||||
if [[ "${option}" == "--help" ]]; then
|
||||
echo "This script runs checks on the repository."
|
||||
echo "It has 2 modes: with and without an option."
|
||||
echo ""
|
||||
echo "Options are used in GitHub Actions and can be:"
|
||||
echo " --copyright"
|
||||
echo " --license"
|
||||
echo " --release"
|
||||
echo " --style"
|
||||
echo " --history"
|
||||
echo ""
|
||||
echo "As a githook, the script is used without options."
|
||||
echo "In that case, it will run all the checks except style."
|
||||
echo ""
|
||||
echo "Use --help to print this help message."
|
||||
fi
|
||||
|
||||
cd $(git rev-parse --show-toplevel)
|
||||
|
||||
# copyright check
|
||||
copyright=true
|
||||
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
|
||||
if git grep -l "^\(#\|//\).*\(\-2020\|\ 2010,\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2021:"
|
||||
cat matches.txt
|
||||
copyright=false
|
||||
fi
|
||||
fi
|
||||
|
||||
# license check
|
||||
license=true
|
||||
if [[ "${option}" == "--license" || "${option}" == "" ]]; then
|
||||
if git grep -li "^\(#\|//\).*GNU\ Lesser\ General\ Public\ License" > matches.txt; then
|
||||
echo "Please update the following files to the BSD-3 license:"
|
||||
cat matches.txt
|
||||
license=false
|
||||
fi
|
||||
fi
|
||||
|
||||
# release check
|
||||
release=true
|
||||
if [[ "${option}" == "--release" || "${option}" == "" ]]; then
|
||||
if git grep -l "^\(#\|//\).*LLNL\-CODE\-443211" > matches.txt
|
||||
then
|
||||
echo "Please update the following files to LLNL-CODE-806117:"
|
||||
cat matches.txt
|
||||
release=false
|
||||
fi
|
||||
fi
|
||||
|
||||
# wrap-up
|
||||
code=0
|
||||
if ! $copyright ; then
|
||||
echo "copyright check failed, unroll log for details"
|
||||
code=1
|
||||
fi
|
||||
if ! $license ; then
|
||||
echo "license check failed, unroll log for details"
|
||||
code=1
|
||||
fi
|
||||
if ! $release ; then
|
||||
echo "release check failed, unroll log for details"
|
||||
code=1
|
||||
fi
|
||||
|
||||
# `code-style` is not just a check, it will actually reformat the code if
|
||||
# necessary. This means that if one pushes while the repo is in dirty state
|
||||
# (changes not staged), those changes may be mixed with format changes.
|
||||
# To activate this, you will need to hard-copy this hook script in the hook
|
||||
# directory and uncomment only then. (See README.md)
|
||||
#
|
||||
## style check
|
||||
#if [[ "${option}" == "--style" || "${option}" == "" ]]; then
|
||||
if [[ "${option}" == "--style" ]]; then
|
||||
if which astyle && [[ "$(astyle --version)" == "Artistic Style Version 3.1" ]]; then
|
||||
cd tests/scripts
|
||||
if ! ./runtest code-style; then code=1; fi
|
||||
cd -
|
||||
else
|
||||
echo "Warning: astyle not found or version is not 3.1"
|
||||
fi
|
||||
fi
|
||||
|
||||
# branch-history
|
||||
if [[ "${option}" == "--history" || "${option}" == "" ]]; then
|
||||
git fetch origin master:master
|
||||
cd tests/scripts
|
||||
if ! ./runtest branch-history; then code=1; fi
|
||||
cd -
|
||||
fi
|
||||
|
||||
exit $code
|
||||
+9
-29
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
SRC = $(if $(MFEM_DIR),$(MFEM_DIR)/config/,)
|
||||
|
||||
@@ -36,31 +36,19 @@ CONFIG_MK = config.mk
|
||||
all: header config-mk
|
||||
|
||||
MPI = $(MFEM_USE_MPI:NO=)
|
||||
GHV_CXX ?= $(MFEM_CXX)
|
||||
GHV = get_hypre_version
|
||||
GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
|
||||
SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
|
||||
SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
|
||||
SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
|
||||
MUMPS = $(MFEM_USE_MUMPS:NO=)
|
||||
GMV_CXX ?= $(MFEM_CXX)
|
||||
GMV = get_mumps_version
|
||||
GMV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
|
||||
|
||||
$(GHV): $(SRC)$(GHV).cpp
|
||||
$(call mfem-info, Determining HYPRE version ...)
|
||||
$(GHV_CXX) ${GHV_FLAGS} $(SRC)$(GHV).cpp -o $(GHV)
|
||||
$(MFEM_CXX) ${GHV_FLAGS} $(SRC)$(GHV).cpp -o $(GHV)
|
||||
$(GHV).out: $(GHV)
|
||||
./$(GHV) > $(GHV).out
|
||||
.INTERMEDIATE: $(GHV) $(GHV).out
|
||||
|
||||
$(GMV): $(SRC)$(GMV).cpp
|
||||
$(call mfem-info, Determining MUMPS version ...)
|
||||
$(GMV_CXX) ${GMV_FLAGS} $(SRC)$(GMV).cpp -o $(GMV)
|
||||
$(GMV).out: $(GMV)
|
||||
./$(GMV) > $(GMV).out
|
||||
.INTERMEDIATE: $(GMV) $(GMV).out
|
||||
|
||||
get-hypre-version: $(GHV).out
|
||||
$(eval MFEM_HYPRE_VERSION:=$(shell cat $(GHV).out))
|
||||
$(if $(MFEM_HYPRE_VERSION),$(eval export MFEM_HYPRE_VERSION)\
|
||||
@@ -73,18 +61,10 @@ check-smx:
|
||||
$(call mfem-info, MFEM_USE_SIMMETRIX = $(MFEM_USE_SIMMETRIX))
|
||||
$(eval export MFEM_USE_SIMMETRIX)
|
||||
|
||||
get-mumps-version: $(GMV).out
|
||||
$(eval MFEM_MUMPS_VERSION:=$(shell cat $(GMV).out))
|
||||
$(if $(MFEM_MUMPS_VERSION),$(eval export MFEM_MUMPS_VERSION)\
|
||||
$(info MUMPS version: $(MFEM_MUMPS_VERSION)),\
|
||||
$(error Unable to determine MUMPS version))
|
||||
|
||||
header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx,) \
|
||||
$(if $(MUMPS),get-mumps-version,)
|
||||
header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx)
|
||||
$(call mfem-info, Writing $(CONFIG_HPP) ...)
|
||||
@set -- && \
|
||||
for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX) \
|
||||
$(if $(MUMPS),MFEM_MUMPS_VERSION); do \
|
||||
for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX); do \
|
||||
eval var=\$$$$def && \
|
||||
if [ "NO" != "$${var}" ]; then \
|
||||
set -- "$$@" -e "s|// \(#define $${def} \)|\1|" && \
|
||||
|
||||
+20
-246
@@ -1,15 +1,15 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
make="${MAKE:-make}"
|
||||
mpiexec="${MPIEXEC:-mpirun}"
|
||||
@@ -42,56 +42,12 @@ groups_serial=(
|
||||
"Performance miniapps:"
|
||||
"miniapps/performance"
|
||||
"ex1.cpp"'
|
||||
'"amgx"
|
||||
"AmgX examples:"
|
||||
"examples/amgx"
|
||||
"ex1.cpp"'
|
||||
'"caliper"
|
||||
"Caliper examples:"
|
||||
"examples/caliper"
|
||||
"ex1.cpp"'
|
||||
'"ginkgo"
|
||||
"Ginkgo examples:"
|
||||
"examples/ginkgo"
|
||||
"ex1.cpp"'
|
||||
'"hiop"
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
"ex1.cpp ex2.cpp"'
|
||||
# ""'
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
mesh-optimizer.cpp minimal-surface.cpp"'
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"cvsRoberts_ASAi_dns.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp "'
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1.cpp"'
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp lor-transfer.cpp"'
|
||||
'"toys"
|
||||
"Toys miniapps:"
|
||||
"miniapps/toys"
|
||||
"automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp snake.cpp"'
|
||||
'"convergence"
|
||||
"Convergence tests:"
|
||||
"tests/convergence"
|
||||
"rates.cpp"'
|
||||
mesh-optimizer.cpp"'
|
||||
)
|
||||
# Parallel groups
|
||||
groups_parallel=(
|
||||
@@ -112,72 +68,16 @@ groups_parallel=(
|
||||
"Performance miniapps:"
|
||||
"miniapps/performance"
|
||||
"ex1p.cpp"'
|
||||
'"amgx"
|
||||
"AmgX examples:"
|
||||
"examples/amgx"
|
||||
"ex1p.cpp"'
|
||||
'"caliper"
|
||||
"Caliper examples:"
|
||||
"examples/caliper"
|
||||
"ex1p.cpp"'
|
||||
'"hiop"
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9p.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
"ex1p.cpp ex6p.cpp"'
|
||||
'"superlu"
|
||||
"Superlu examples:"
|
||||
"examples/superlu"
|
||||
"ex1p.cpp"'
|
||||
# ""'
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
"joule.cpp"'
|
||||
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"adjoint_advection_diffusion.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"pfindpts.cpp schwarz_ex1p.cpp"'
|
||||
'"navier"
|
||||
"Navier miniapps:"
|
||||
"miniapps/navier"
|
||||
"navier_cht.cpp"'
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1p.cpp nurbs_ex11p.cpp"'
|
||||
'"shifted"
|
||||
"Shifted miniapps:"
|
||||
"miniapps/shifted"
|
||||
"distance.cpp"'
|
||||
'"solvers"
|
||||
"Solvers miniapps:"
|
||||
"miniapps/solvers"
|
||||
"block-solvers.cpp"'
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-cd.cpp get-values.cpp load-dc.cpp"'
|
||||
'"convergence"
|
||||
"Convergence tests:"
|
||||
"tests/convergence"
|
||||
"prates.cpp"'
|
||||
'"par-mesh-format"
|
||||
"Parallel mesh tests:"
|
||||
"tests/par-mesh-format"
|
||||
"ex1p.cpp"'
|
||||
)
|
||||
# All groups serial + parallel runs mixed in the same group:
|
||||
groups_all=(
|
||||
@@ -197,80 +97,16 @@ groups_all=(
|
||||
"Performance miniapps:"
|
||||
"miniapps/performance"
|
||||
"ex1{,p}.cpp"'
|
||||
'"amgx"
|
||||
"AmgX examples:"
|
||||
"examples/amgx"
|
||||
"ex1.cpp ex1p.cpp"'
|
||||
'"caliper"
|
||||
"Caliper examples:"
|
||||
"examples/caliper"
|
||||
"ex1.cpp ex1p.cpp"'
|
||||
'"ginkgo"
|
||||
"Ginkgo examples:"
|
||||
"examples/ginkgo"
|
||||
"ex1.cpp"'
|
||||
'"hiop"
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp ex9p.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
"ex1.cpp ex1p.cpp ex2.cpp ex6p.cpp"'
|
||||
'"superlu"
|
||||
"Superlu examples:"
|
||||
"examples/superlu"
|
||||
"ex1p.cpp"'
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
|
||||
{,p}mesh-optimizer.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
"joule.cpp"'
|
||||
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"adjoint_advection_diffusion.cpp cvsRoberts_ASAi_dns.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp schwarz_ex1p.cpp"'
|
||||
'"navier"
|
||||
"Navier miniapps:"
|
||||
"miniapps/navier"
|
||||
"navier_cht.cpp"'
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1.cpp nurbs_ex1p.cpp nurbs_ex11p.cpp"'
|
||||
'"shifted"
|
||||
"Shifted miniapps:"
|
||||
"miniapps/shifted"
|
||||
"distance.cpp"'
|
||||
'"solvers"
|
||||
"Solvers miniapps:"
|
||||
"miniapps/solvers"
|
||||
"block-solvers.cpp"'
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp lor-transfer.cpp"'
|
||||
'"toys"
|
||||
"Toys miniapps:"
|
||||
"miniapps/toys"
|
||||
"automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp snake.cpp"'
|
||||
'"convergence"
|
||||
"Convergence tests:"
|
||||
"tests/convergence"
|
||||
"{,p}rates.cpp"'
|
||||
'"par-mesh-format"
|
||||
"Parallel mesh tests:"
|
||||
"tests/par-mesh-format"
|
||||
"ex1p.cpp"'
|
||||
)
|
||||
make_all="all"
|
||||
base_timeformat=$'real: %3Rs user: %3Us sys: %3Ss %%cpu: %P'
|
||||
@@ -316,15 +152,6 @@ function extract_sample_runs()
|
||||
fi
|
||||
if [ "$device_runs" == "yes" ]; then
|
||||
runs=`printf "%s" "$runs" | grep ".* -d .*"`
|
||||
if [ "$have_occa" == "no" ]; then
|
||||
runs=`printf "%s" "$runs" | grep -v ".* -d occa-.*"`
|
||||
fi
|
||||
if [ "$have_raja" == "no" ]; then
|
||||
runs=`printf "%s" "$runs" | grep -v ".* -d raja-.*"`
|
||||
fi
|
||||
if [ "$have_ceed" == "no" ]; then
|
||||
runs=`printf "%s" "$runs" | grep -v ".* -d ceed-.*"`
|
||||
fi
|
||||
else
|
||||
runs=`printf "%s" "$runs" | grep -v ".* -d .*"`
|
||||
fi
|
||||
@@ -365,11 +192,11 @@ function help_message()
|
||||
-s|-show Show all configured sample runs and exit
|
||||
-n Dry run: replace "\$sample_run" with "echo \$sample_run"
|
||||
<var>=<value>
|
||||
Set a shell script variable; see below for valid variables
|
||||
Set a shell script varible; see below for valid variables
|
||||
* Any other parameter is treated as <mfem_dir>
|
||||
<mfem_dir> [${mfem_dir}] is the MFEM source directory
|
||||
|
||||
This script tests all the sample runs listed in the beginning comments of
|
||||
This script tests all the sample runs listed in the begining comments of
|
||||
MFEM's serial or parallel example and miniapp codes. The list of sample runs
|
||||
is auto-generated and can be viewed with the -s|-show option.
|
||||
|
||||
@@ -449,8 +276,8 @@ case "$1" in
|
||||
;;
|
||||
-dev)
|
||||
device_runs="yes"
|
||||
mfem_config+=" MFEM_USE_CUDA=YES MFEM_USE_OPENMP=YES"
|
||||
# OCCA, RAJA, libCEED are enabled below, if available
|
||||
mfem_config+=" MFEM_USE_CUDA=YES MFEM_USE_MM=YES \
|
||||
MFEM_USE_OCCA=YES MFEM_USE_RAJA=YES MFEM_USE_OPENMP=YES"
|
||||
;;
|
||||
-v)
|
||||
valgrind="yes"
|
||||
@@ -544,15 +371,10 @@ function timed_run()
|
||||
# This function is used to execute the sample runs
|
||||
function go()
|
||||
{
|
||||
# Strip leading and trailing spaces from $1 and store the result in cmd_line
|
||||
shopt -s extglob
|
||||
local cmd_line="${1##+( )}"
|
||||
cmd_line="${cmd_line%%+( )}"
|
||||
shopt -u extglob
|
||||
eval local cmd=(${cmd_line})
|
||||
local cmd=("$@")
|
||||
local res=""
|
||||
echo $sep
|
||||
echo "<${group}>" "${cmd_line}"
|
||||
echo "<${group}>" "${cmd[@]}"
|
||||
echo $sep
|
||||
if [ "${timing}" == "yes" ]; then
|
||||
timed_run "${cmd[@]}"
|
||||
@@ -564,15 +386,15 @@ function go()
|
||||
else
|
||||
res="${red}FAILED${none}"
|
||||
fi
|
||||
printf "[${res}] <${group}> ${cmd_line}\n"
|
||||
printf "[${res}] <${group}> ${cmd[*]}\n"
|
||||
if [ "${timing}" == "yes" ]; then
|
||||
printf "Run time: %s\n" "${timer}"
|
||||
timer=(${timer})
|
||||
timer="${timer[1]}"
|
||||
printf -v line "[$res](%8s) ${cmd_line}" "$timer"
|
||||
printf -v line "[$res](%8s) ${cmd[*]}" "$timer"
|
||||
summary=("${summary[@]}" "$line")
|
||||
else
|
||||
summary=("${summary[@]}" "[${res}] ${cmd_line}")
|
||||
summary=("${summary[@]}" "[${res}] ${cmd[*]}")
|
||||
fi
|
||||
echo $sep
|
||||
}
|
||||
@@ -588,8 +410,6 @@ function go_group()
|
||||
mkdir -p "${group_output_dir}" || exit 1
|
||||
fi
|
||||
for src in "$@"; do
|
||||
ex_run_suffix=${run_suffix} && [[ $src =~ ex0p?\.cpp ]] \
|
||||
&& ex_run_suffix=""
|
||||
cd "${mfem_dir}/${group_dir}" || exit 1
|
||||
extract_sample_runs "${src}" || continue
|
||||
[ "${#runs[@]}" -eq 0 ] && continue
|
||||
@@ -609,7 +429,7 @@ function go_group()
|
||||
fi
|
||||
for run in "${runs[@]}"; do
|
||||
if [ "${run}" == "" ]; then continue; fi
|
||||
eval go \"\${run_prefix} \${run} \${ex_run_suffix}\" $output
|
||||
eval go \${run_prefix} \${run} \${run_suffix} $output
|
||||
done
|
||||
done
|
||||
${make} clean-exec
|
||||
@@ -638,30 +458,6 @@ fi
|
||||
|
||||
TIMEFORMAT="${base_timeformat}"
|
||||
|
||||
# Setup optional libraries when not using externally built MFEM:
|
||||
if [ "${built}" == "no" ]; then
|
||||
have_occa="no"
|
||||
have_raja="no"
|
||||
have_ceed="no"
|
||||
if [ "${device_runs}" == "yes" ]; then
|
||||
if [ -n "${CUDA_ARCH}" ]; then
|
||||
mfem_config+=" CUDA_ARCH=${CUDA_ARCH}"
|
||||
fi
|
||||
if [ -d "${mfem_dir}/../occa" ]; then
|
||||
mfem_config+=" MFEM_USE_OCCA=YES"
|
||||
have_occa="yes"
|
||||
fi
|
||||
if [ -d "${mfem_dir}/../raja" ]; then
|
||||
mfem_config+=" MFEM_USE_RAJA=YES"
|
||||
have_raja="yes"
|
||||
fi
|
||||
if [ -d "${mfem_dir}/../libCEED" ]; then
|
||||
mfem_config+=" MFEM_USE_CEED=YES"
|
||||
have_ceed="yes"
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
|
||||
function set_echo_log()
|
||||
{
|
||||
local dirname=`dirname "$1"`
|
||||
@@ -675,7 +471,7 @@ function echo_run()
|
||||
{
|
||||
echo " $@"
|
||||
{ echo " $@"; echo "$sep";
|
||||
eval "$@"
|
||||
"$@"
|
||||
echo "$sep"; } >> "$echo_log" 2>&1
|
||||
}
|
||||
|
||||
@@ -695,28 +491,6 @@ function build_all()
|
||||
echo_run ${make} config ${mfem_config} || exit 1
|
||||
echo_run ${make} ${make_j} || exit 1
|
||||
echo_run ${make} ${make_all} ${make_j} || exit 1
|
||||
# Build groups in directories other than the directories built by 'make all':
|
||||
for group_params in "${groups[@]}"; do
|
||||
eval params=(${group_params})
|
||||
group_dir="${params[2]}"
|
||||
case "$group_dir" in
|
||||
(examples*|miniapps*)
|
||||
# Built by 'make all'
|
||||
;;
|
||||
(*)
|
||||
if [ "${mfem_dir}" != "${mfem_build_dir}" ]; then
|
||||
echo_run mkdir -p "${group_dir}" || exit 1
|
||||
echo_run cd "${group_dir}" || exit 1
|
||||
echo_run cp -af "${mfem_dir}/${group_dir}/makefile" . || exit 1
|
||||
else
|
||||
echo_run cd "${group_dir}" || exit 1
|
||||
fi
|
||||
echo_run ${make} clean || exit 1
|
||||
echo_run ${make} MFEM_DIR="${mfem_dir}" ${make_j} || exit 1
|
||||
echo_run cd "${mfem_build_dir}" || exit 1
|
||||
;;
|
||||
esac
|
||||
done
|
||||
}
|
||||
|
||||
# Function that runs all sample runs, given by the array variable "groups".
|
||||
|
||||
+15
-21
@@ -1,13 +1,13 @@
|
||||
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_TEMPLATE_CONFIG
|
||||
#define MFEM_TEMPLATE_CONFIG
|
||||
@@ -29,20 +29,8 @@
|
||||
#define MFEM_ALWAYS_INLINE
|
||||
#endif
|
||||
|
||||
// --- MFEM_VECTORIZE_LOOP (disabled)
|
||||
#if (__cplusplus >= 201103L) && !defined(MFEM_DEBUG) && defined(__GNUC__)
|
||||
//#define MFEM_VECTORIZE_LOOP _Pragma("GCC ivdep")
|
||||
#define MFEM_VECTORIZE_LOOP
|
||||
#else
|
||||
#define MFEM_VECTORIZE_LOOP
|
||||
#endif
|
||||
|
||||
// MFEM_TEMPLATE_BLOCK_SIZE is the block size used by the template matrix-matrix
|
||||
// multiply, Mult_AB, defined in tmatrix.hpp. This parameter will generally
|
||||
// require tuning to determine good value. It is probably highly influenced by
|
||||
// the SIMD width when Mult_AB is used with a SIMD type like AutoSIMD.
|
||||
#define MFEM_TEMPLATE_BLOCK_SIZE 4
|
||||
|
||||
#define MFEM_SIMD_SIZE 32
|
||||
#define MFEM_TEMPLATE_ENABLE_SERIALIZE
|
||||
|
||||
// #define MFEM_TEMPLATE_ELTRANS_HAS_NODE_DOFS
|
||||
@@ -50,14 +38,20 @@
|
||||
// #define MFEM_TEMPLATE_FIELD_EVAL_DATA_HAS_DOFS
|
||||
#define MFEM_TEMPLATE_INTRULE_COEFF_PRECOMP
|
||||
|
||||
#ifdef MFEM_COUNT_FLOPS
|
||||
// derived macros
|
||||
#define MFEM_ROUNDUP(val,base) ((((val)+(base)-1)/(base))*(base))
|
||||
#define MFEM_ALIGN_SIZE(size,type) \
|
||||
MFEM_ROUNDUP(size,(MFEM_SIMD_SIZE)/sizeof(type))
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
extern long long flop_count;
|
||||
long long flop_count;
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef MFEM_COUNT_FLOPS
|
||||
#define MFEM_FLOPS_RESET() (mfem::internal::flop_count = 0)
|
||||
#define MFEM_FLOPS_ADD(cnt) (mfem::internal::flop_count += (cnt))
|
||||
#define MFEM_FLOPS_GET() (mfem::internal::flop_count)
|
||||
|
||||
+15
-43
@@ -1,13 +1,13 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Utilities for the "make test" and "make check" targets.
|
||||
|
||||
@@ -39,7 +39,7 @@ set -- $$($(1) $(SHELL) -c "$(2)" 2>&1); while [ "$$#" -gt 3 ]; do shift; done
|
||||
endef
|
||||
define TIMECMD.NOTGNU
|
||||
set -- $$($(1) -l $(SHELL) -c "{ $(2); } > /dev/null 2>&1" 2>&1; echo $$?); \
|
||||
set -- "$$1"s "$$(($$7/1024))"kB "$${!#}"
|
||||
set -- "$$1"s "$$(($$7/1024))"kB "$${60}"
|
||||
endef
|
||||
define TIMECMD.BASH
|
||||
TIMEFORMAT=$$'%3Rs'; \
|
||||
@@ -57,61 +57,33 @@ TIMECMD := $(word 1,$(TIMECMD))
|
||||
ifneq (,$(filter test%,$(MAKECMDGOALS)))
|
||||
MAKEFLAGS += -k
|
||||
endif
|
||||
# Test runs of the examples/miniapps with parameters - check exit code:
|
||||
# 0 means success, 255 means the test was skipped, anything else means error
|
||||
# Test runs of the examples/miniapps with parameters - check exit code
|
||||
mfem-test = \
|
||||
printf " $(3) [$(2) $(1) ... ]: "; \
|
||||
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) $(if $(5),,-no-vis )$(4) \
|
||||
> $(1).stderr 2>&1); \
|
||||
err="$$3"; \
|
||||
if [ "$$3" = 0 ]; then $(PRINT_OK); \
|
||||
else if [ "$$3" = 255 ]; then $(PRINT_SKIP); err=0; \
|
||||
else $(PRINT_FAILED); cat $(1).stderr; fi; fi; \
|
||||
rm -f $(1).stderr; exit $$err
|
||||
if [ "$$3" = 0 ]; \
|
||||
then $(PRINT_OK); else $(PRINT_FAILED); cat $(1).stderr; fi; \
|
||||
rm -f $(1).stderr; exit $$3
|
||||
|
||||
# Test runs of the examples/miniapps - check exit code and if a file exists
|
||||
# See mfem-test for the interpretation of the error code
|
||||
mfem-test-file = \
|
||||
printf " $(3) [$(2) $(1) ... ]: "; \
|
||||
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) -no-vis > $(1).stderr 2>&1); \
|
||||
err="$$3"; \
|
||||
if [ "$$3" = 0 ] && [ -e $(4) ]; then $(PRINT_OK); \
|
||||
else if [ "$$3" = 255 ] && [ -e $(4) ]; then $(PRINT_SKIP); err=0; \
|
||||
else $(PRINT_FAILED); cat $(1).stderr; err=64; fi; fi; \
|
||||
rm -f $(1).stderr; exit $$err
|
||||
if [ "$$3" = 0 ] && [ -e $(4) ]; \
|
||||
then $(PRINT_OK); else $(PRINT_FAILED); cat $(1).stderr; fi; \
|
||||
rm -f $(1).stderr; exit $$3
|
||||
|
||||
.PHONY: test test-par-YES test-par-NO test-ser test-par test-clean test-print
|
||||
|
||||
# What sets of tests to run in serial and parallel
|
||||
test-par-YES: $(PAR_$(MFEM_TESTS):=-test-par) $(SEQ_$(MFEM_TESTS):=-test-seq)
|
||||
test-par-NO: $(SEQ_$(MFEM_TESTS):=-test-seq)
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
.PHONY: test-par-YES-cuda test-par-NO-cuda test-ser-cuda test-par-cuda test-cuda
|
||||
test-par-YES: test-par-YES-cuda
|
||||
test-par-NO: test-par-NO-cuda
|
||||
test-par-YES-cuda: test-par-cuda test-ser-cuda
|
||||
test-par-NO-cuda: test-ser-cuda
|
||||
test-ser-cuda: $(SEQ_DEVICE_$(MFEM_TESTS):=-test-seq-cuda)
|
||||
test-par-cuda: $(PAR_DEVICE_$(MFEM_TESTS):=-test-par-cuda)
|
||||
test-cuda: test-par-$(MFEM_USE_MPI)-cuda clean-exec
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
.PHONY: test-par-YES-hip test-par-NO-hip test-ser-hip test-par-hip test-hip
|
||||
test-par-YES: test-par-YES-hip
|
||||
test-par-NO: test-par-NO-hip
|
||||
test-par-YES-hip: test-par-hip test-ser-hip
|
||||
test-par-NO-hip: test-ser-hip
|
||||
test-ser-hip: $(SEQ_DEVICE_$(MFEM_TESTS):=-test-seq-hip)
|
||||
test-par-hip: $(PAR_DEVICE_$(MFEM_TESTS):=-test-par-hip)
|
||||
test-hip: test-par-$(MFEM_USE_MPI)-hip clean-exec
|
||||
endif
|
||||
test-ser: test-par-NO
|
||||
test-par: test-par-YES
|
||||
test: all test-par-$(MFEM_USE_MPI) clean-exec
|
||||
test-noclean: all test-par-$(MFEM_USE_MPI)
|
||||
test-clean: ; @rm -f *.stderr
|
||||
test-print: \
|
||||
mfem-test=printf " $(3) [$(2) ./$(1) $(if $(5),,-no-vis )$(if $(4),$(4) )]\n"
|
||||
test-print: mfem-test=printf " $(3) [$(2) ./$(1) -no-vis $(if $(4),$(4) )]\n"
|
||||
test-print: mfem-test-file=printf " $(3) [$(2) ./$(1) -no-vis ]\n"
|
||||
test-print: test-par-$(MFEM_USE_MPI)
|
||||
ifeq ($(MAKECMDGOALS),test-print)
|
||||
|
||||
+419
-204
@@ -1,258 +1,241 @@
|
||||
MFEM NC mesh v1.0
|
||||
MFEM mesh v1.1
|
||||
|
||||
# NCMesh supported geometry types:
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
3
|
||||
|
||||
# rank attr geom ref_type nodes/children
|
||||
elements
|
||||
137
|
||||
-1 1 5 7 1 18 35 52 69 86 103 120
|
||||
-1 1 5 7 2 3 4 5 6 7 8 17
|
||||
0 1 5 0 0 27 81 30 35 82 87 85
|
||||
0 1 5 0 27 8 28 81 82 36 83 87
|
||||
0 1 5 0 81 28 20 29 87 83 37 84
|
||||
0 1 5 0 30 81 29 11 85 87 84 38
|
||||
0 1 5 0 35 82 87 85 16 31 86 34
|
||||
0 1 5 0 82 36 83 87 31 21 32 86
|
||||
-1 1 5 7 9 10 11 12 13 14 15 16
|
||||
0 1 5 0 87 88 179 91 92 180 185 183
|
||||
0 1 5 0 88 83 89 179 180 94 181 185
|
||||
0 1 5 0 179 89 37 90 185 181 98 182
|
||||
0 1 5 0 91 179 90 84 183 185 182 99
|
||||
0 1 5 0 92 180 185 183 86 93 184 97
|
||||
0 1 5 0 180 94 181 185 93 32 95 184
|
||||
0 1 5 0 185 181 98 182 184 95 26 96
|
||||
0 1 5 0 183 185 182 99 97 184 96 33
|
||||
0 1 5 0 85 87 84 38 34 86 33 24
|
||||
-1 1 5 7 19 20 21 22 23 24 25 26
|
||||
0 1 5 0 8 39 100 28 36 101 105 83
|
||||
0 1 5 0 39 1 40 100 101 45 102 105
|
||||
0 1 5 0 100 40 9 41 105 102 46 103
|
||||
0 1 5 0 28 100 41 20 83 105 103 37
|
||||
0 1 5 0 36 101 105 83 21 42 104 32
|
||||
0 1 5 0 101 45 102 105 42 17 43 104
|
||||
0 1 5 0 105 102 46 103 104 43 22 44
|
||||
-1 1 5 7 27 28 29 30 31 32 33 34
|
||||
0 1 5 0 83 106 186 89 94 187 191 181
|
||||
0 1 5 0 106 105 107 186 187 110 188 191
|
||||
0 1 5 0 186 107 103 108 191 188 112 189
|
||||
0 1 5 0 89 186 108 37 181 191 189 98
|
||||
0 1 5 0 94 187 191 181 32 109 190 95
|
||||
0 1 5 0 187 110 188 191 109 104 111 190
|
||||
0 1 5 0 191 188 112 189 190 111 44 113
|
||||
0 1 5 0 181 191 189 98 95 190 113 26
|
||||
-1 1 5 7 36 37 38 39 40 49 50 51
|
||||
0 1 5 0 20 41 114 49 37 103 119 117
|
||||
0 1 5 0 41 9 47 114 103 46 115 119
|
||||
0 1 5 0 114 47 3 48 119 115 53 116
|
||||
0 1 5 0 49 114 48 10 117 119 116 54
|
||||
-1 1 5 7 41 42 43 44 45 46 47 48
|
||||
0 1 5 0 37 108 192 122 98 189 197 195
|
||||
0 1 5 0 108 103 120 192 189 112 193 197
|
||||
0 1 5 0 192 120 119 121 197 193 126 194
|
||||
0 1 5 0 122 192 121 117 195 197 194 127
|
||||
0 1 5 0 98 189 197 195 26 113 196 125
|
||||
0 1 5 0 189 112 193 197 113 44 123 196
|
||||
0 1 5 0 197 193 126 194 196 123 118 124
|
||||
0 1 5 0 195 197 194 127 125 196 124 52
|
||||
0 1 5 0 103 46 115 119 44 22 50 118
|
||||
0 1 5 0 119 115 53 116 118 50 18 51
|
||||
0 1 5 0 117 119 116 54 52 118 51 23
|
||||
-1 1 5 7 53 54 55 56 57 58 67 68
|
||||
0 1 5 0 11 29 128 56 38 84 132 130
|
||||
0 1 5 0 29 20 49 128 84 37 117 132
|
||||
0 1 5 0 128 49 10 55 132 117 54 129
|
||||
0 1 5 0 56 128 55 2 130 132 129 59
|
||||
0 1 5 0 38 84 132 130 24 33 131 58
|
||||
-1 1 5 7 59 60 61 62 63 64 65 66
|
||||
0 1 5 0 84 90 198 133 99 182 202 200
|
||||
0 1 5 0 90 37 122 198 182 98 195 202
|
||||
0 1 5 0 198 122 117 134 202 195 127 199
|
||||
0 1 5 0 133 198 134 132 200 202 199 136
|
||||
0 1 5 0 99 182 202 200 33 96 201 135
|
||||
0 1 5 0 182 98 195 202 96 26 125 201
|
||||
0 1 5 0 202 195 127 199 201 125 52 137
|
||||
0 1 5 0 200 202 199 136 135 201 137 131
|
||||
0 1 5 0 132 117 54 129 131 52 23 57
|
||||
0 1 5 0 130 132 129 59 58 131 57 19
|
||||
-1 1 5 7 70 71 72 81 82 83 84 85
|
||||
0 1 5 0 16 31 86 34 64 172 175 173
|
||||
0 1 5 0 31 21 32 86 172 65 164 175
|
||||
-1 1 5 7 73 74 75 76 77 78 79 80
|
||||
0 1 5 0 86 93 184 97 176 219 222 220
|
||||
0 1 5 0 93 32 95 184 219 169 216 222
|
||||
0 1 5 0 184 95 26 96 222 216 150 203
|
||||
0 1 5 0 97 184 96 33 220 222 203 145
|
||||
0 1 5 0 176 219 222 220 175 177 221 178
|
||||
0 1 5 0 219 169 216 222 177 164 171 221
|
||||
0 1 5 0 222 216 150 203 221 171 66 147
|
||||
0 1 5 0 220 222 203 145 178 221 147 138
|
||||
0 1 5 0 34 86 33 24 173 175 138 67
|
||||
0 1 5 0 64 172 175 173 4 60 174 63
|
||||
0 1 5 0 172 65 164 175 60 12 61 174
|
||||
0 1 5 0 175 164 66 138 174 61 25 62
|
||||
0 1 5 0 173 175 138 67 63 174 62 15
|
||||
-1 1 5 7 87 88 89 90 99 100 101 102
|
||||
0 1 5 0 21 42 104 32 65 162 166 164
|
||||
0 1 5 0 42 17 43 104 162 71 163 166
|
||||
0 1 5 0 104 43 22 44 166 163 72 152
|
||||
-1 1 5 7 91 92 93 94 95 96 97 98
|
||||
0 1 5 0 32 109 190 95 169 214 218 216
|
||||
0 1 5 0 109 104 111 190 214 168 215 218
|
||||
0 1 5 0 190 111 44 113 218 215 160 209
|
||||
0 1 5 0 95 190 113 26 216 218 209 150
|
||||
0 1 5 0 169 214 218 216 164 167 217 171
|
||||
0 1 5 0 214 168 215 218 167 166 170 217
|
||||
0 1 5 0 218 215 160 209 217 170 152 157
|
||||
0 1 5 0 216 218 209 150 171 217 157 66
|
||||
0 1 5 0 65 162 166 164 12 68 165 61
|
||||
0 1 5 0 162 71 163 166 68 5 69 165
|
||||
0 1 5 0 166 163 72 152 165 69 13 70
|
||||
0 1 5 0 164 166 152 66 61 165 70 25
|
||||
-1 1 5 7 104 113 114 115 116 117 118 119
|
||||
-1 1 5 7 105 106 107 108 109 110 111 112
|
||||
0 1 5 0 26 113 196 125 150 209 213 204
|
||||
0 1 5 0 113 44 123 196 209 160 210 213
|
||||
0 1 5 0 196 123 118 124 213 210 161 211
|
||||
0 1 5 0 125 196 124 52 204 213 211 151
|
||||
0 1 5 0 150 209 213 204 66 157 212 148
|
||||
0 1 5 0 209 160 210 213 157 152 158 212
|
||||
0 1 5 0 213 210 161 211 212 158 156 159
|
||||
0 1 5 0 204 213 211 151 148 212 159 139
|
||||
0 1 5 0 44 22 50 118 152 72 153 156
|
||||
0 1 5 0 118 50 18 51 156 153 76 154
|
||||
0 1 5 0 52 118 51 23 139 156 154 77
|
||||
0 1 5 0 66 152 156 139 25 70 155 75
|
||||
0 1 5 0 152 72 153 156 70 13 73 155
|
||||
0 1 5 0 156 153 76 154 155 73 7 74
|
||||
0 1 5 0 139 156 154 77 75 155 74 14
|
||||
-1 1 5 7 121 122 131 132 133 134 135 136
|
||||
0 1 5 0 24 33 131 58 67 138 143 141
|
||||
-1 1 5 7 123 124 125 126 127 128 129 130
|
||||
0 1 5 0 33 96 201 135 145 203 208 206
|
||||
0 1 5 0 96 26 125 201 203 150 204 208
|
||||
0 1 5 0 201 125 52 137 208 204 151 205
|
||||
0 1 5 0 135 201 137 131 206 208 205 146
|
||||
0 1 5 0 145 203 208 206 138 147 207 144
|
||||
0 1 5 0 203 150 204 208 147 66 148 207
|
||||
0 1 5 0 208 204 151 205 207 148 139 149
|
||||
0 1 5 0 206 208 205 146 144 207 149 143
|
||||
0 1 5 0 131 52 23 57 143 139 77 140
|
||||
0 1 5 0 58 131 57 19 141 143 140 80
|
||||
0 1 5 0 67 138 143 141 15 62 142 79
|
||||
0 1 5 0 138 66 139 143 62 25 75 142
|
||||
0 1 5 0 143 139 77 140 142 75 14 78
|
||||
0 1 5 0 141 143 140 80 79 142 78 6
|
||||
120
|
||||
1 5 0 27 81 30 35 82 87 85
|
||||
1 5 30 81 29 11 85 87 84 38
|
||||
1 5 85 87 84 38 34 86 33 24
|
||||
1 5 35 82 87 85 16 31 86 34
|
||||
1 5 82 36 83 87 31 21 32 86
|
||||
1 5 180 94 181 185 93 32 95 184
|
||||
1 5 92 180 185 183 86 93 184 97
|
||||
1 5 183 185 182 99 97 184 96 33
|
||||
1 5 185 181 98 182 184 95 26 96
|
||||
1 5 179 89 37 90 185 181 98 182
|
||||
1 5 91 179 90 84 183 185 182 99
|
||||
1 5 87 88 179 91 92 180 185 183
|
||||
1 5 88 83 89 179 180 94 181 185
|
||||
1 5 81 28 20 29 87 83 37 84
|
||||
1 5 27 8 28 81 82 36 83 87
|
||||
1 5 8 39 100 28 36 101 105 83
|
||||
1 5 36 101 105 83 21 42 104 32
|
||||
1 5 101 45 102 105 42 17 43 104
|
||||
1 5 39 1 40 100 101 45 102 105
|
||||
1 5 100 40 9 41 105 102 46 103
|
||||
1 5 105 102 46 103 104 43 22 44
|
||||
1 5 186 107 103 108 191 188 112 189
|
||||
1 5 106 105 107 186 187 110 188 191
|
||||
1 5 187 110 188 191 109 104 111 190
|
||||
1 5 191 188 112 189 190 111 44 113
|
||||
1 5 181 191 189 98 95 190 113 26
|
||||
1 5 94 187 191 181 32 109 190 95
|
||||
1 5 83 106 186 89 94 187 191 181
|
||||
1 5 89 186 108 37 181 191 189 98
|
||||
1 5 28 100 41 20 83 105 103 37
|
||||
1 5 20 41 114 49 37 103 119 117
|
||||
1 5 37 108 192 122 98 189 197 195
|
||||
1 5 122 192 121 117 195 197 194 127
|
||||
1 5 195 197 194 127 125 196 124 52
|
||||
1 5 98 189 197 195 26 113 196 125
|
||||
1 5 189 112 193 197 113 44 123 196
|
||||
1 5 197 193 126 194 196 123 118 124
|
||||
1 5 192 120 119 121 197 193 126 194
|
||||
1 5 108 103 120 192 189 112 193 197
|
||||
1 5 103 46 115 119 44 22 50 118
|
||||
1 5 41 9 47 114 103 46 115 119
|
||||
1 5 114 47 3 48 119 115 53 116
|
||||
1 5 119 115 53 116 118 50 18 51
|
||||
1 5 117 119 116 54 52 118 51 23
|
||||
1 5 49 114 48 10 117 119 116 54
|
||||
1 5 128 49 10 55 132 117 54 129
|
||||
1 5 56 128 55 2 130 132 129 59
|
||||
1 5 11 29 128 56 38 84 132 130
|
||||
1 5 29 20 49 128 84 37 117 132
|
||||
1 5 84 90 198 133 99 182 202 200
|
||||
1 5 90 37 122 198 182 98 195 202
|
||||
1 5 198 122 117 134 202 195 127 199
|
||||
1 5 133 198 134 132 200 202 199 136
|
||||
1 5 200 202 199 136 135 201 137 131
|
||||
1 5 202 195 127 199 201 125 52 137
|
||||
1 5 182 98 195 202 96 26 125 201
|
||||
1 5 99 182 202 200 33 96 201 135
|
||||
1 5 38 84 132 130 24 33 131 58
|
||||
1 5 130 132 129 59 58 131 57 19
|
||||
1 5 132 117 54 129 131 52 23 57
|
||||
1 5 131 52 23 57 143 139 77 140
|
||||
1 5 58 131 57 19 141 143 140 80
|
||||
1 5 24 33 131 58 67 138 143 141
|
||||
1 5 33 96 201 135 145 203 208 206
|
||||
1 5 96 26 125 201 203 150 204 208
|
||||
1 5 201 125 52 137 208 204 151 205
|
||||
1 5 135 201 137 131 206 208 205 146
|
||||
1 5 206 208 205 146 144 207 149 143
|
||||
1 5 208 204 151 205 207 148 139 149
|
||||
1 5 203 150 204 208 147 66 148 207
|
||||
1 5 145 203 208 206 138 147 207 144
|
||||
1 5 138 66 139 143 62 25 75 142
|
||||
1 5 67 138 143 141 15 62 142 79
|
||||
1 5 141 143 140 80 79 142 78 6
|
||||
1 5 143 139 77 140 142 75 14 78
|
||||
1 5 139 156 154 77 75 155 74 14
|
||||
1 5 52 118 51 23 139 156 154 77
|
||||
1 5 118 50 18 51 156 153 76 154
|
||||
1 5 156 153 76 154 155 73 7 74
|
||||
1 5 152 72 153 156 70 13 73 155
|
||||
1 5 44 22 50 118 152 72 153 156
|
||||
1 5 209 160 210 213 157 152 158 212
|
||||
1 5 213 210 161 211 212 158 156 159
|
||||
1 5 196 123 118 124 213 210 161 211
|
||||
1 5 113 44 123 196 209 160 210 213
|
||||
1 5 26 113 196 125 150 209 213 204
|
||||
1 5 125 196 124 52 204 213 211 151
|
||||
1 5 204 213 211 151 148 212 159 139
|
||||
1 5 150 209 213 204 66 157 212 148
|
||||
1 5 66 152 156 139 25 70 155 75
|
||||
1 5 164 166 152 66 61 165 70 25
|
||||
1 5 216 218 209 150 171 217 157 66
|
||||
1 5 169 214 218 216 164 167 217 171
|
||||
1 5 32 109 190 95 169 214 218 216
|
||||
1 5 95 190 113 26 216 218 209 150
|
||||
1 5 190 111 44 113 218 215 160 209
|
||||
1 5 109 104 111 190 214 168 215 218
|
||||
1 5 214 168 215 218 167 166 170 217
|
||||
1 5 218 215 160 209 217 170 152 157
|
||||
1 5 104 43 22 44 166 163 72 152
|
||||
1 5 166 163 72 152 165 69 13 70
|
||||
1 5 162 71 163 166 68 5 69 165
|
||||
1 5 42 17 43 104 162 71 163 166
|
||||
1 5 21 42 104 32 65 162 166 164
|
||||
1 5 65 162 166 164 12 68 165 61
|
||||
1 5 172 65 164 175 60 12 61 174
|
||||
1 5 175 164 66 138 174 61 25 62
|
||||
1 5 219 169 216 222 177 164 171 221
|
||||
1 5 176 219 222 220 175 177 221 178
|
||||
1 5 220 222 203 145 178 221 147 138
|
||||
1 5 222 216 150 203 221 171 66 147
|
||||
1 5 184 95 26 96 222 216 150 203
|
||||
1 5 97 184 96 33 220 222 203 145
|
||||
1 5 86 93 184 97 176 219 222 220
|
||||
1 5 93 32 95 184 219 169 216 222
|
||||
1 5 31 21 32 86 172 65 164 175
|
||||
1 5 16 31 86 34 64 172 175 173
|
||||
1 5 34 86 33 24 173 175 138 67
|
||||
1 5 173 175 138 67 63 174 62 15
|
||||
1 5 64 172 175 173 4 60 174 63
|
||||
|
||||
# attr geom nodes
|
||||
boundary
|
||||
96
|
||||
1 3 30 81 27 0
|
||||
2 3 0 27 82 35
|
||||
5 3 30 0 35 85
|
||||
1 3 81 28 8 27
|
||||
2 3 27 8 36 82
|
||||
1 3 29 20 28 81
|
||||
1 3 11 29 81 30
|
||||
5 3 11 30 85 38
|
||||
5 3 38 85 34 24
|
||||
2 3 35 82 31 16
|
||||
5 3 85 35 16 34
|
||||
2 3 82 36 21 31
|
||||
5 3 38 85 34 24
|
||||
1 3 29 20 28 81
|
||||
1 3 81 28 8 27
|
||||
2 3 27 8 36 82
|
||||
1 3 28 100 39 8
|
||||
2 3 8 39 101 36
|
||||
2 3 36 101 42 21
|
||||
2 3 101 45 17 42
|
||||
3 3 45 102 43 17
|
||||
1 3 100 40 1 39
|
||||
2 3 39 1 45 101
|
||||
3 3 1 40 102 45
|
||||
1 3 41 9 40 100
|
||||
3 3 40 9 46 102
|
||||
1 3 20 41 100 28
|
||||
2 3 36 101 42 21
|
||||
2 3 101 45 17 42
|
||||
3 3 45 102 43 17
|
||||
3 3 102 46 22 43
|
||||
1 3 20 41 100 28
|
||||
1 3 49 114 41 20
|
||||
3 3 46 115 50 22
|
||||
1 3 114 47 9 41
|
||||
3 3 9 47 115 46
|
||||
1 3 48 3 47 114
|
||||
3 3 47 3 53 115
|
||||
4 3 3 48 116 53
|
||||
1 3 10 48 114 49
|
||||
4 3 48 10 54 116
|
||||
3 3 46 115 50 22
|
||||
3 3 115 53 18 50
|
||||
4 3 53 116 51 18
|
||||
4 3 116 54 23 51
|
||||
1 3 56 128 29 11
|
||||
5 3 56 11 38 130
|
||||
1 3 128 49 20 29
|
||||
1 3 10 48 114 49
|
||||
4 3 48 10 54 116
|
||||
1 3 55 10 49 128
|
||||
4 3 10 55 129 54
|
||||
1 3 2 55 128 56
|
||||
4 3 55 2 59 129
|
||||
5 3 2 56 130 59
|
||||
1 3 56 128 29 11
|
||||
5 3 56 11 38 130
|
||||
1 3 128 49 20 29
|
||||
5 3 130 38 24 58
|
||||
4 3 54 129 57 23
|
||||
4 3 129 59 19 57
|
||||
5 3 59 130 58 19
|
||||
2 3 16 31 172 64
|
||||
5 3 34 16 64 173
|
||||
2 3 31 21 65 172
|
||||
5 3 24 34 173 67
|
||||
2 3 64 172 60 4
|
||||
5 3 173 64 4 63
|
||||
6 3 4 60 174 63
|
||||
2 3 172 65 12 60
|
||||
6 3 60 12 61 174
|
||||
6 3 174 61 25 62
|
||||
5 3 67 173 63 15
|
||||
6 3 63 174 62 15
|
||||
2 3 21 42 162 65
|
||||
2 3 42 17 71 162
|
||||
3 3 17 43 163 71
|
||||
3 3 43 22 72 163
|
||||
2 3 65 162 68 12
|
||||
6 3 12 68 165 61
|
||||
2 3 162 71 5 68
|
||||
3 3 71 163 69 5
|
||||
6 3 68 5 69 165
|
||||
3 3 163 72 13 69
|
||||
6 3 165 69 13 70
|
||||
6 3 61 165 70 25
|
||||
3 3 22 50 153 72
|
||||
3 3 50 18 76 153
|
||||
4 3 18 51 154 76
|
||||
4 3 51 23 77 154
|
||||
6 3 25 70 155 75
|
||||
3 3 72 153 73 13
|
||||
6 3 70 13 73 155
|
||||
3 3 153 76 7 73
|
||||
4 3 76 154 74 7
|
||||
6 3 155 73 7 74
|
||||
4 3 154 77 14 74
|
||||
6 3 75 155 74 14
|
||||
5 3 58 24 67 141
|
||||
4 3 54 129 57 23
|
||||
4 3 23 57 140 77
|
||||
4 3 57 19 80 140
|
||||
5 3 19 58 141 80
|
||||
5 3 58 24 67 141
|
||||
6 3 62 25 75 142
|
||||
5 3 141 67 15 79
|
||||
6 3 15 62 142 79
|
||||
6 3 62 25 75 142
|
||||
4 3 77 140 78 14
|
||||
6 3 142 75 14 78
|
||||
4 3 140 80 6 78
|
||||
5 3 80 141 79 6
|
||||
6 3 79 142 78 6
|
||||
4 3 77 140 78 14
|
||||
6 3 142 75 14 78
|
||||
4 3 154 77 14 74
|
||||
6 3 75 155 74 14
|
||||
4 3 51 23 77 154
|
||||
3 3 50 18 76 153
|
||||
4 3 18 51 154 76
|
||||
3 3 153 76 7 73
|
||||
4 3 76 154 74 7
|
||||
6 3 155 73 7 74
|
||||
3 3 72 153 73 13
|
||||
6 3 70 13 73 155
|
||||
3 3 22 50 153 72
|
||||
6 3 25 70 155 75
|
||||
6 3 61 165 70 25
|
||||
3 3 43 22 72 163
|
||||
3 3 163 72 13 69
|
||||
6 3 165 69 13 70
|
||||
2 3 162 71 5 68
|
||||
3 3 71 163 69 5
|
||||
6 3 68 5 69 165
|
||||
2 3 42 17 71 162
|
||||
3 3 17 43 163 71
|
||||
2 3 21 42 162 65
|
||||
2 3 65 162 68 12
|
||||
6 3 12 68 165 61
|
||||
2 3 172 65 12 60
|
||||
6 3 60 12 61 174
|
||||
6 3 174 61 25 62
|
||||
2 3 31 21 65 172
|
||||
2 3 16 31 172 64
|
||||
5 3 34 16 64 173
|
||||
5 3 24 34 173 67
|
||||
5 3 67 173 63 15
|
||||
6 3 63 174 62 15
|
||||
2 3 64 172 60 4
|
||||
5 3 173 64 4 63
|
||||
6 3 4 60 174 63
|
||||
|
||||
# vert_id p1 p2
|
||||
vertex_parents
|
||||
215
|
||||
8 0 1
|
||||
@@ -471,9 +454,28 @@ vertex_parents
|
||||
221 171 178
|
||||
222 203 219
|
||||
|
||||
# top-level node coordinates
|
||||
coordinates
|
||||
8
|
||||
coarse_elements
|
||||
17
|
||||
7 11 12 9 10 6 5 8 7
|
||||
7 0 14 13 1 3 4 120 2
|
||||
7 27 22 21 28 26 23 24 25
|
||||
7 15 18 19 29 16 17 20 122
|
||||
7 31 38 37 32 34 35 36 33
|
||||
7 30 40 41 44 124 39 42 43
|
||||
7 49 50 51 52 56 55 54 53
|
||||
7 47 48 45 46 57 126 59 58
|
||||
7 113 114 111 112 108 107 110 109
|
||||
7 116 115 128 117 119 105 106 118
|
||||
7 93 96 95 94 92 97 98 91
|
||||
7 103 102 99 130 104 101 100 90
|
||||
7 85 84 83 86 88 81 82 87
|
||||
7 132 80 77 76 89 79 78 75
|
||||
7 63 64 65 66 70 69 68 67
|
||||
7 62 134 60 61 72 71 74 73
|
||||
7 121 123 125 127 129 131 133 135
|
||||
|
||||
vertices
|
||||
223
|
||||
3
|
||||
0 0 0
|
||||
1 0 0
|
||||
@@ -483,5 +485,218 @@ coordinates
|
||||
1 0 1
|
||||
0 1 1
|
||||
1 1 1
|
||||
|
||||
mfem_mesh_end
|
||||
0.5 0 0
|
||||
1 0.5 0
|
||||
0.5 1 0
|
||||
0 0.5 0
|
||||
0.5 0 1
|
||||
1 0.5 1
|
||||
0.5 1 1
|
||||
0 0.5 1
|
||||
0 0 0.5
|
||||
1 0 0.5
|
||||
1 1 0.5
|
||||
0 1 0.5
|
||||
0.5 0.5 0
|
||||
0.5 0 0.5
|
||||
1 0.5 0.5
|
||||
0.5 1 0.5
|
||||
0 0.5 0.5
|
||||
0.5 0.5 1
|
||||
0.5 0.5 0.5
|
||||
0.25 0 0
|
||||
0.5 0.25 0
|
||||
0.25 0.5 0
|
||||
0 0.25 0
|
||||
0.25 0 0.5
|
||||
0.5 0.25 0.5
|
||||
0.25 0.5 0.5
|
||||
0 0.25 0.5
|
||||
0 0 0.25
|
||||
0.5 0 0.25
|
||||
0.5 0.5 0.25
|
||||
0 0.5 0.25
|
||||
0.75 0 0
|
||||
1 0.25 0
|
||||
0.75 0.5 0
|
||||
0.75 0 0.5
|
||||
1 0.25 0.5
|
||||
0.75 0.5 0.5
|
||||
1 0 0.25
|
||||
1 0.5 0.25
|
||||
1 0.75 0
|
||||
0.75 1 0
|
||||
0.5 0.75 0
|
||||
1 0.75 0.5
|
||||
0.75 1 0.5
|
||||
0.5 0.75 0.5
|
||||
1 1 0.25
|
||||
0.5 1 0.25
|
||||
0.25 1 0
|
||||
0 0.75 0
|
||||
0.25 1 0.5
|
||||
0 0.75 0.5
|
||||
0 1 0.25
|
||||
0.25 0 1
|
||||
0.5 0.25 1
|
||||
0.25 0.5 1
|
||||
0 0.25 1
|
||||
0 0 0.75
|
||||
0.5 0 0.75
|
||||
0.5 0.5 0.75
|
||||
0 0.5 0.75
|
||||
0.75 0 1
|
||||
1 0.25 1
|
||||
0.75 0.5 1
|
||||
1 0 0.75
|
||||
1 0.5 0.75
|
||||
1 0.75 1
|
||||
0.75 1 1
|
||||
0.5 0.75 1
|
||||
1 1 0.75
|
||||
0.5 1 0.75
|
||||
0.25 1 1
|
||||
0 0.75 1
|
||||
0 1 0.75
|
||||
0.25 0.25 0
|
||||
0.25 0 0.25
|
||||
0.5 0.25 0.25
|
||||
0.25 0.5 0.25
|
||||
0 0.25 0.25
|
||||
0.25 0.25 0.5
|
||||
0.25 0.25 0.25
|
||||
0.375 0.25 0.25
|
||||
0.5 0.375 0.25
|
||||
0.375 0.5 0.25
|
||||
0.25 0.375 0.25
|
||||
0.25 0.25 0.375
|
||||
0.375 0.25 0.5
|
||||
0.5 0.25 0.375
|
||||
0.5 0.375 0.5
|
||||
0.375 0.5 0.5
|
||||
0.25 0.375 0.5
|
||||
0.5 0.5 0.375
|
||||
0.25 0.5 0.375
|
||||
0.75 0.25 0
|
||||
0.75 0 0.25
|
||||
1 0.25 0.25
|
||||
0.75 0.5 0.25
|
||||
0.75 0.25 0.5
|
||||
0.75 0.25 0.25
|
||||
0.625 0.25 0.25
|
||||
0.75 0.375 0.25
|
||||
0.625 0.5 0.25
|
||||
0.625 0.25 0.5
|
||||
0.75 0.25 0.375
|
||||
0.75 0.375 0.5
|
||||
0.75 0.5 0.375
|
||||
0.625 0.5 0.5
|
||||
0.75 0.75 0
|
||||
1 0.75 0.25
|
||||
0.75 1 0.25
|
||||
0.5 0.75 0.25
|
||||
0.75 0.75 0.5
|
||||
0.75 0.75 0.25
|
||||
0.75 0.625 0.25
|
||||
0.625 0.75 0.25
|
||||
0.5 0.625 0.25
|
||||
0.75 0.625 0.5
|
||||
0.625 0.75 0.5
|
||||
0.5 0.625 0.5
|
||||
0.75 0.75 0.375
|
||||
0.5 0.75 0.375
|
||||
0.25 0.75 0
|
||||
0.25 1 0.25
|
||||
0 0.75 0.25
|
||||
0.25 0.75 0.5
|
||||
0.25 0.75 0.25
|
||||
0.25 0.625 0.25
|
||||
0.375 0.75 0.25
|
||||
0.25 0.625 0.5
|
||||
0.25 0.75 0.375
|
||||
0.375 0.75 0.5
|
||||
0.25 0.5 0.75
|
||||
0.5 0.75 0.75
|
||||
0.25 1 0.75
|
||||
0 0.75 0.75
|
||||
0.25 0.75 1
|
||||
0.25 0.75 0.75
|
||||
0.25 0.625 0.75
|
||||
0.25 0.5 0.625
|
||||
0.25 0.75 0.625
|
||||
0.375 0.5 0.75
|
||||
0.5 0.625 0.75
|
||||
0.375 0.75 0.75
|
||||
0.5 0.5 0.625
|
||||
0.5 0.75 0.625
|
||||
0.75 0.5 0.75
|
||||
1 0.75 0.75
|
||||
0.75 1 0.75
|
||||
0.75 0.75 1
|
||||
0.75 0.75 0.75
|
||||
0.625 0.5 0.75
|
||||
0.75 0.625 0.75
|
||||
0.625 0.75 0.75
|
||||
0.75 0.5 0.625
|
||||
0.75 0.75 0.625
|
||||
0.75 0 0.75
|
||||
1 0.25 0.75
|
||||
0.5 0.25 0.75
|
||||
0.75 0.25 1
|
||||
0.75 0.25 0.75
|
||||
0.625 0.25 0.75
|
||||
0.75 0.25 0.625
|
||||
0.5 0.25 0.625
|
||||
0.75 0.375 0.75
|
||||
0.5 0.375 0.75
|
||||
0.25 0 0.75
|
||||
0 0.25 0.75
|
||||
0.25 0.25 1
|
||||
0.25 0.25 0.75
|
||||
0.25 0.25 0.625
|
||||
0.375 0.25 0.75
|
||||
0.25 0.375 0.75
|
||||
0.375 0.375 0.25
|
||||
0.375 0.25 0.375
|
||||
0.5 0.375 0.375
|
||||
0.375 0.5 0.375
|
||||
0.25 0.375 0.375
|
||||
0.375 0.375 0.5
|
||||
0.375 0.375 0.375
|
||||
0.625 0.375 0.25
|
||||
0.625 0.25 0.375
|
||||
0.75 0.375 0.375
|
||||
0.625 0.5 0.375
|
||||
0.625 0.375 0.5
|
||||
0.625 0.375 0.375
|
||||
0.625 0.625 0.25
|
||||
0.75 0.625 0.375
|
||||
0.625 0.75 0.375
|
||||
0.5 0.625 0.375
|
||||
0.625 0.625 0.5
|
||||
0.625 0.625 0.375
|
||||
0.375 0.625 0.25
|
||||
0.375 0.75 0.375
|
||||
0.25 0.625 0.375
|
||||
0.375 0.625 0.5
|
||||
0.375 0.625 0.375
|
||||
0.375 0.5 0.625
|
||||
0.5 0.625 0.625
|
||||
0.375 0.75 0.625
|
||||
0.25 0.625 0.625
|
||||
0.375 0.625 0.75
|
||||
0.375 0.625 0.625
|
||||
0.625 0.5 0.625
|
||||
0.75 0.625 0.625
|
||||
0.625 0.75 0.625
|
||||
0.625 0.625 0.75
|
||||
0.625 0.625 0.625
|
||||
0.625 0.25 0.625
|
||||
0.75 0.375 0.625
|
||||
0.5 0.375 0.625
|
||||
0.625 0.375 0.75
|
||||
0.625 0.375 0.625
|
||||
0.375 0.25 0.625
|
||||
0.25 0.375 0.625
|
||||
0.375 0.375 0.75
|
||||
0.375 0.375 0.625
|
||||
|
||||
+88
-51
@@ -1,64 +1,56 @@
|
||||
MFEM NC mesh v1.0
|
||||
MFEM mesh v1.1
|
||||
|
||||
# NCMesh supported geometry types:
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
# rank attr geom ref_type nodes/children
|
||||
elements
|
||||
37
|
||||
-1 1 3 3 1 10 19 28
|
||||
-1 1 3 3 2 3 4 9
|
||||
0 1 3 0 0 9 21 12
|
||||
0 1 3 0 9 4 10 21
|
||||
-1 1 3 3 5 6 7 8
|
||||
0 1 3 0 21 22 37 25
|
||||
0 1 3 0 22 10 23 37
|
||||
0 1 3 0 37 23 8 24
|
||||
0 1 3 0 25 37 24 11
|
||||
0 1 3 0 12 21 11 7
|
||||
-1 1 3 3 11 12 13 14
|
||||
0 1 3 0 4 13 26 10
|
||||
0 1 3 0 13 1 14 26
|
||||
0 1 3 0 26 14 5 15
|
||||
-1 1 3 3 15 16 17 18
|
||||
0 1 3 0 10 27 38 23
|
||||
0 1 3 0 27 26 28 38
|
||||
0 1 3 0 38 28 15 29
|
||||
0 1 3 0 23 38 29 8
|
||||
-1 1 3 3 20 25 26 27
|
||||
-1 1 3 3 21 22 23 24
|
||||
0 1 3 0 8 29 39 33
|
||||
0 1 3 0 29 15 31 39
|
||||
0 1 3 0 39 31 30 32
|
||||
0 1 3 0 33 39 32 18
|
||||
0 1 3 0 15 5 16 30
|
||||
0 1 3 0 30 16 3 17
|
||||
0 1 3 0 18 30 17 6
|
||||
-1 1 3 3 29 30 35 36
|
||||
0 1 3 0 7 11 34 20
|
||||
-1 1 3 3 31 32 33 34
|
||||
0 1 3 0 11 24 40 35
|
||||
0 1 3 0 24 8 33 40
|
||||
0 1 3 0 40 33 18 36
|
||||
0 1 3 0 35 40 36 34
|
||||
0 1 3 0 34 18 6 19
|
||||
0 1 3 0 20 34 19 2
|
||||
28
|
||||
1 3 0 9 21 12
|
||||
1 3 12 21 11 7
|
||||
1 3 21 22 37 25
|
||||
1 3 25 37 24 11
|
||||
1 3 37 23 8 24
|
||||
1 3 22 10 23 37
|
||||
1 3 9 4 10 21
|
||||
1 3 4 13 26 10
|
||||
1 3 13 1 14 26
|
||||
1 3 26 14 5 15
|
||||
1 3 38 28 15 29
|
||||
1 3 27 26 28 38
|
||||
1 3 10 27 38 23
|
||||
1 3 23 38 29 8
|
||||
1 3 8 29 39 33
|
||||
1 3 33 39 32 18
|
||||
1 3 39 31 30 32
|
||||
1 3 29 15 31 39
|
||||
1 3 15 5 16 30
|
||||
1 3 30 16 3 17
|
||||
1 3 18 30 17 6
|
||||
1 3 34 18 6 19
|
||||
1 3 40 33 18 36
|
||||
1 3 24 8 33 40
|
||||
1 3 11 24 40 35
|
||||
1 3 35 40 36 34
|
||||
1 3 7 11 34 20
|
||||
1 3 20 34 19 2
|
||||
|
||||
# attr geom nodes
|
||||
boundary
|
||||
16
|
||||
1 1 0 9
|
||||
4 1 12 0
|
||||
1 1 9 4
|
||||
4 1 7 12
|
||||
1 1 9 4
|
||||
1 1 4 13
|
||||
1 1 13 1
|
||||
2 1 1 14
|
||||
@@ -67,12 +59,11 @@ boundary
|
||||
2 1 16 3
|
||||
3 1 3 17
|
||||
3 1 17 6
|
||||
4 1 20 7
|
||||
3 1 6 19
|
||||
4 1 20 7
|
||||
3 1 19 2
|
||||
4 1 2 20
|
||||
|
||||
# vert_id p1 p2
|
||||
vertex_parents
|
||||
37
|
||||
4 0 1
|
||||
@@ -113,13 +104,59 @@ vertex_parents
|
||||
39 29 32
|
||||
40 24 36
|
||||
|
||||
# top-level node coordinates
|
||||
coordinates
|
||||
4
|
||||
coarse_elements
|
||||
9
|
||||
3 2 5 4 3
|
||||
3 0 6 28 1
|
||||
3 12 11 10 13
|
||||
3 7 8 9 30
|
||||
3 14 17 16 15
|
||||
3 32 18 19 20
|
||||
3 24 23 22 25
|
||||
3 26 34 21 27
|
||||
3 29 31 33 35
|
||||
|
||||
vertices
|
||||
41
|
||||
2
|
||||
0 0
|
||||
1 0
|
||||
0 1
|
||||
1 1
|
||||
|
||||
mfem_mesh_end
|
||||
0.5 0
|
||||
1 0.5
|
||||
0.5 1
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
0.25 0
|
||||
0.5 0.25
|
||||
0.25 0.5
|
||||
0 0.25
|
||||
0.75 0
|
||||
1 0.25
|
||||
0.75 0.5
|
||||
1 0.75
|
||||
0.75 1
|
||||
0.5 0.75
|
||||
0.25 1
|
||||
0 0.75
|
||||
0.25 0.25
|
||||
0.375 0.25
|
||||
0.5 0.375
|
||||
0.375 0.5
|
||||
0.25 0.375
|
||||
0.75 0.25
|
||||
0.625 0.25
|
||||
0.75 0.375
|
||||
0.625 0.5
|
||||
0.75 0.75
|
||||
0.75 0.625
|
||||
0.625 0.75
|
||||
0.5 0.625
|
||||
0.25 0.75
|
||||
0.25 0.625
|
||||
0.375 0.75
|
||||
0.375 0.375
|
||||
0.625 0.375
|
||||
0.625 0.625
|
||||
0.375 0.625
|
||||
|
||||
+55
-53
@@ -1,43 +1,51 @@
|
||||
MFEM NC mesh v1.0
|
||||
MFEM mesh v1.1
|
||||
|
||||
# NCMesh supported geometry types:
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
# rank attr geom ref_type nodes/children
|
||||
elements
|
||||
20
|
||||
0 1 3 0 1 2 11 10
|
||||
0 1 3 0 2 3 12 11
|
||||
0 1 3 0 3 4 13 12
|
||||
0 2 3 0 4 5 14 13
|
||||
0 2 3 0 5 6 15 14
|
||||
0 2 3 0 6 7 16 15
|
||||
0 2 3 0 7 8 17 16
|
||||
-1 1 3 3 8 13 14 15
|
||||
-1 1 3 3 9 10 11 12
|
||||
0 1 3 0 0 23 30 26
|
||||
0 1 3 0 23 18 24 30
|
||||
0 1 3 0 30 24 22 25
|
||||
0 1 3 0 26 30 25 21
|
||||
0 1 3 0 18 1 19 22
|
||||
0 1 3 0 22 19 10 20
|
||||
-1 1 3 3 16 17 18 19
|
||||
0 1 3 0 21 25 31 29
|
||||
0 1 3 0 25 22 27 31
|
||||
0 1 3 0 31 27 20 28
|
||||
0 1 3 0 29 31 28 9
|
||||
17
|
||||
1 3 0 23 30 26
|
||||
1 3 26 30 25 21
|
||||
1 3 30 24 22 25
|
||||
1 3 23 18 24 30
|
||||
1 3 18 1 19 22
|
||||
1 3 22 19 10 20
|
||||
1 3 31 27 20 28
|
||||
1 3 25 22 27 31
|
||||
1 3 21 25 31 29
|
||||
1 3 29 31 28 9
|
||||
1 3 1 2 11 10
|
||||
1 3 2 3 12 11
|
||||
1 3 3 4 13 12
|
||||
2 3 4 5 14 13
|
||||
2 3 5 6 15 14
|
||||
2 3 6 7 16 15
|
||||
2 3 7 8 17 16
|
||||
|
||||
# attr geom nodes
|
||||
boundary
|
||||
25
|
||||
3 1 0 23
|
||||
1 1 26 0
|
||||
1 1 21 26
|
||||
3 1 23 18
|
||||
3 1 18 1
|
||||
3 1 10 20
|
||||
3 1 20 28
|
||||
1 1 29 21
|
||||
3 1 28 9
|
||||
1 1 9 29
|
||||
3 1 1 2
|
||||
3 1 11 10
|
||||
3 1 2 3
|
||||
@@ -53,18 +61,7 @@ boundary
|
||||
3 1 7 8
|
||||
2 1 8 17
|
||||
3 1 17 16
|
||||
3 1 0 23
|
||||
1 1 26 0
|
||||
3 1 23 18
|
||||
1 1 21 26
|
||||
3 1 18 1
|
||||
3 1 10 20
|
||||
1 1 29 21
|
||||
3 1 20 28
|
||||
3 1 28 9
|
||||
1 1 9 29
|
||||
|
||||
# vert_id p1 p2
|
||||
vertex_parents
|
||||
14
|
||||
18 0 1
|
||||
@@ -82,21 +79,14 @@ vertex_parents
|
||||
30 23 25
|
||||
31 25 28
|
||||
|
||||
# root element orientation
|
||||
root_state
|
||||
8
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
coarse_elements
|
||||
3
|
||||
3 0 3 2 1
|
||||
3 8 7 6 9
|
||||
3 17 4 5 18
|
||||
|
||||
# top-level node coordinates
|
||||
coordinates
|
||||
18
|
||||
vertices
|
||||
32
|
||||
2
|
||||
0 0
|
||||
1 0
|
||||
@@ -116,5 +106,17 @@ coordinates
|
||||
6 1
|
||||
7 1
|
||||
8 1
|
||||
|
||||
mfem_mesh_end
|
||||
0.5 0
|
||||
1 0.5
|
||||
0.5 1
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
0.25 0
|
||||
0.5 0.25
|
||||
0.25 0.5
|
||||
0 0.25
|
||||
0.5 0.75
|
||||
0.25 1
|
||||
0 0.75
|
||||
0.25 0.25
|
||||
0.25 0.75
|
||||
|
||||
+8
-8
@@ -31,14 +31,14 @@ POINTS 27 double
|
||||
7 0.5 1
|
||||
8 0.5 1
|
||||
CELLS 8 56
|
||||
6 0 18 9 1 19 10
|
||||
6 1 19 10 2 20 11
|
||||
6 2 20 11 3 21 12
|
||||
6 3 21 12 4 22 13
|
||||
6 4 22 13 5 23 14
|
||||
6 5 23 14 6 24 15
|
||||
6 6 24 15 7 25 16
|
||||
6 7 25 16 8 26 17
|
||||
6 0 9 18 1 10 19
|
||||
6 1 10 19 2 11 20
|
||||
6 2 11 20 3 12 21
|
||||
6 3 12 21 4 13 22
|
||||
6 4 13 22 5 14 23
|
||||
6 5 14 23 6 15 24
|
||||
6 6 15 24 7 16 25
|
||||
6 7 16 25 8 17 26
|
||||
CELL_TYPES 8
|
||||
13
|
||||
13
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user