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+14
-16
@@ -15,10 +15,8 @@ install:
|
||||
- msmpisdk.msi /passive
|
||||
- set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
|
||||
|
||||
# Install METIS, use a mirror because the original source server is not always
|
||||
# up. Original url:
|
||||
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
|
||||
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
|
||||
# Install METIS
|
||||
- ps: Start-FileDownload 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz'
|
||||
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd metis-5.1.0
|
||||
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
|
||||
@@ -28,24 +26,24 @@ install:
|
||||
- cd ..
|
||||
|
||||
# Install hypre
|
||||
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
|
||||
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.19.0/src
|
||||
- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- ps: Start-FileDownload 'https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz'
|
||||
- 7z x hypre-2.10.0b.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.10.0b
|
||||
- cmake -Hsrc -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
# - cmake -Hsrc -Bbuild -DCMAKE_BUILD_TYPE=Release -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- cmake --build build
|
||||
- cmake --build build --target install
|
||||
- cd ../..
|
||||
- cd ..
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2.10.0b\src\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2.10.0b\src\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2.10.0b\src\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2.10.0b\src\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
|
||||
build_script:
|
||||
- cmake --build build_parallel --config Release -j 4
|
||||
- cmake --build build_serial --config Release -j 4
|
||||
- cmake --build build_serial --target exec --config Release -j 4
|
||||
- cmake --build build_parallel
|
||||
- cmake --build build_serial
|
||||
|
||||
after_build:
|
||||
- cd build_serial
|
||||
- ctest -C Release --output-on-failure
|
||||
# - cmake --build build_parallel --target check
|
||||
- cmake --build build_serial --target check
|
||||
|
||||
@@ -1,12 +0,0 @@
|
||||
# extends https://github.com/jupyterhub/repo2docker/blob/main/repo2docker/buildpacks/conda/environment.yml
|
||||
# see https://mybinder.readthedocs.io/en/latest/using/config_files.html#environment-yml-install-a-conda-environment
|
||||
channels:
|
||||
- conda-forge
|
||||
dependencies:
|
||||
- xeus-cling=0.13.0
|
||||
- xwidgets=0.26.0
|
||||
# NOTE: it's possible these aren't needed for the lab frontend
|
||||
- widgetsnbextension=3.5.1
|
||||
- pip
|
||||
- pip:
|
||||
- glvis==0.3.2
|
||||
@@ -1,26 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
set -e
|
||||
|
||||
# cling is installed here (in bin) and will look in {dir}/include and {dir}/lib
|
||||
# without extra intervention (jk it doesn't look in {dir}/lib unless something
|
||||
# has been #included from {dir}/include first...)
|
||||
install_dir=/srv/conda/envs/notebook
|
||||
mkdir -p $install_dir
|
||||
|
||||
# build and install mfem, which is the directory we start in
|
||||
make serial SHARED=YES -j8
|
||||
make install PREFIX=$install_dir
|
||||
|
||||
# install xeus-glvis
|
||||
git clone https://github.com/GLVis/xeus-glvis.git
|
||||
pushd xeus-glvis
|
||||
make install prefix=$install_dir
|
||||
popd
|
||||
|
||||
# install jupyter-lab extension
|
||||
jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build
|
||||
jupyter labextension install glvis-jupyter
|
||||
|
||||
# fixup kernelspec, we could probably do this from sh but ¯\_(ツ)_/¯
|
||||
python .binder/update_kernel_env.py
|
||||
@@ -1,14 +0,0 @@
|
||||
# Update the LD_LIBRARY_PATH of the C++14 kernel so it can find mfem without
|
||||
# extra pragma cling statements
|
||||
|
||||
import json
|
||||
|
||||
kernelspec = "/srv/conda/envs/notebook/share/jupyter/kernels/xcpp14/kernel.json"
|
||||
|
||||
with open(kernelspec, "r") as f:
|
||||
obj = json.load(f)
|
||||
|
||||
obj["env"] = {"LD_LIBRARY_PATH": "/srv/conda/envs/notebook/lib"}
|
||||
|
||||
with open(kernelspec, "w") as f:
|
||||
json.dump(obj, f)
|
||||
@@ -1,32 +0,0 @@
|
||||
codecov:
|
||||
require_ci_to_pass: yes
|
||||
|
||||
coverage:
|
||||
precision: 2
|
||||
round: nearest
|
||||
range: "0...100"
|
||||
status:
|
||||
patch:
|
||||
default:
|
||||
target: auto
|
||||
threshold: 0%
|
||||
base: auto
|
||||
branches:
|
||||
- master
|
||||
if_ci_failed: error
|
||||
informational: true
|
||||
only_pulls: true
|
||||
project:
|
||||
default:
|
||||
target: auto # compares coverage to the previous base commit
|
||||
threshold: 1% # allows variations around the target
|
||||
base: auto
|
||||
branches:
|
||||
- master
|
||||
if_ci_failed: error
|
||||
only_pulls: true
|
||||
|
||||
github_checks:
|
||||
annotations: false
|
||||
|
||||
comment: false
|
||||
@@ -1,61 +0,0 @@
|
||||
# Configuration for probot-stale - https://github.com/probot/stale
|
||||
|
||||
# Number of days of inactivity before an Issue or Pull Request becomes stale
|
||||
daysUntilStale: 30
|
||||
|
||||
# Number of days of inactivity before an Issue or Pull Request with the stale
|
||||
# label is closed. Set to false to disable. If disabled, issues still need to
|
||||
# be closed manually, but will remain marked as stale.
|
||||
daysUntilClose: 7
|
||||
|
||||
# Only issues or pull requests with all of these labels are check if stale.
|
||||
# Defaults to `[]` (disabled)
|
||||
onlyLabels: []
|
||||
|
||||
# Issues or Pull Requests with these labels will never be considered stale. Set
|
||||
# to `[]` to disable
|
||||
exemptLabels:
|
||||
- bug
|
||||
- WIP
|
||||
- ready-for-review
|
||||
- in-review
|
||||
- in-next
|
||||
|
||||
# Set to true to ignore issues in a project (defaults to false)
|
||||
exemptProjects: false
|
||||
|
||||
# Set to true to ignore issues in a milestone (defaults to false)
|
||||
exemptMilestones: false
|
||||
|
||||
# Set to true to ignore issues with an assignee (defaults to false)
|
||||
exemptAssignees: false
|
||||
|
||||
# Label to use when marking an issue as stale
|
||||
staleLabel: stale
|
||||
|
||||
# Comment to post when marking an issue as stale. Set to `false` to disable
|
||||
markComment: >
|
||||
:warning: This issue or PR has been automatically marked as stale because it has not
|
||||
had any activity in the last month. *If no activity occurs in the next week, it will
|
||||
be automatically closed.* Thank you for your contributions.
|
||||
|
||||
# Comment to post when closing a stale issue. Set to `false` to disable
|
||||
closeComment: false
|
||||
|
||||
# Limit the number of actions per hour, from 1-30. Default is 30
|
||||
limitPerRun: 30
|
||||
|
||||
# Limit to only `issues` or `pulls`
|
||||
# only: issues
|
||||
|
||||
# Optionally, specify configuration settings that are specific to just 'issues' or 'pulls':
|
||||
# pulls:
|
||||
# daysUntilStale: 30
|
||||
# markComment: >
|
||||
# This pull request has been automatically marked as stale because it has not had
|
||||
# recent activity. It will be closed if no further activity occurs. Thank you
|
||||
# for your contributions.
|
||||
|
||||
# issues:
|
||||
# exemptLabels:
|
||||
# - confirmed
|
||||
@@ -1,208 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# In this CI section, we build different variants of mfem and run test on them.
|
||||
name: builds-and-tests
|
||||
|
||||
# Github actions can use the default "GITHUB_TOKEN". By default, this token
|
||||
# is set to have permissive access. However, this is not a good practice
|
||||
# security-wise. Here we use an external action, so we restrict the
|
||||
# permission to the minimum required.
|
||||
# When the 'permissions' is set, all the scopes not mentioned are set to the
|
||||
# most restrictive setting. So the following is enough.
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
MFEM_TOP_DIR: mfem
|
||||
|
||||
# Note for future improvements:
|
||||
#
|
||||
# We cannot reuse cached dependencies and have to build them for each target
|
||||
# although they could be shared sometimes. That's because Github cache Action
|
||||
# has no read-only mode. But there is a PR ready for this
|
||||
# (https://github.com/actions/cache/pull/489)
|
||||
|
||||
jobs:
|
||||
builds-and-tests:
|
||||
strategy:
|
||||
matrix:
|
||||
os: [ubuntu-18.04, macos-10.15]
|
||||
target: [dbg, opt]
|
||||
mpi: [seq, par]
|
||||
build-system: [make]
|
||||
hypre-target: [int32]
|
||||
# 'include' allows us to:
|
||||
# - Add a variable to all jobs without creating a new matrix dimension.
|
||||
# Codecov is defined that way.
|
||||
# - Add a new combination.
|
||||
# 'build-system: cmake' and 'hypre-target: int64'
|
||||
#
|
||||
# note: we will gather coverage info for any non-debug run except the
|
||||
# CMake build.
|
||||
include:
|
||||
- target: dbg
|
||||
codecov: NO
|
||||
- target: opt
|
||||
codecov: YES
|
||||
- os: ubuntu-18.04
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
- os: ubuntu-18.04
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int64
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
|
||||
runs-on: ${{ matrix.os }}
|
||||
|
||||
steps:
|
||||
# This external action allows to interrupt a workflow already running on
|
||||
# the same branch to save resource
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
# Checkout MFEM in "mfem" subdirectory. Final path:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
- name: get MPI (Linux)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-18.04'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-18.04'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
|
||||
- name: Set up Homebrew
|
||||
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
|
||||
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-10.15'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install lcov
|
||||
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.0
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.0
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.0
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.0
|
||||
with:
|
||||
os: ${{ matrix.os }}
|
||||
target: ${{ matrix.target }}
|
||||
codecov: ${{ matrix.codecov }}
|
||||
mpi: ${{ matrix.mpi }}
|
||||
build-system: ${{ matrix.build-system }}
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
- name: checks
|
||||
if: matrix.build-system == 'make' && matrix.target == 'dbg'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make check
|
||||
|
||||
- name: unit tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make unittest
|
||||
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make test
|
||||
|
||||
- name: cmake unit tests
|
||||
if: matrix.build-system == 'cmake'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.0
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
@@ -1,100 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: build-analysis
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
COVERAGE_ENV: mfem-coverage
|
||||
|
||||
jobs:
|
||||
gitignore:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.0
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.0
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: int32
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.0
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.0
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: mfem
|
||||
|
||||
- name: test (no clean)
|
||||
run: |
|
||||
cd mfem && make test-noclean
|
||||
|
||||
- name: gitignore
|
||||
run: |
|
||||
cd mfem/tests/scripts
|
||||
./runtest gitignore
|
||||
@@ -1,113 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: repo-check
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
|
||||
jobs:
|
||||
file-headers-check:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
run: |
|
||||
./config/githooks/pre-push --copyright
|
||||
|
||||
continue-on-error: true
|
||||
|
||||
- name: license check
|
||||
id: license
|
||||
run: |
|
||||
./config/githooks/pre-push --license
|
||||
continue-on-error: true
|
||||
|
||||
- name: release check
|
||||
id: release
|
||||
run: |
|
||||
./config/githooks/pre-push --release
|
||||
continue-on-error: true
|
||||
|
||||
- name: wrap-up
|
||||
if: steps.copyright.outcome != 'success' || steps.license.outcome != 'success' || steps.release.outcome != 'success'
|
||||
run: |
|
||||
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
|
||||
echo "copyright check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
|
||||
echo "license check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
|
||||
echo "release check failed, unroll log for details"
|
||||
fi
|
||||
exit 1
|
||||
|
||||
code-style:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
sudo apt-get install astyle=3.1-1ubuntu2
|
||||
|
||||
- name: style check
|
||||
run: |
|
||||
./config/githooks/pre-push --style
|
||||
|
||||
documentation:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
|
||||
- name: build documentation
|
||||
run: |
|
||||
cd tests/scripts
|
||||
./runtest documentation
|
||||
|
||||
branch-history:
|
||||
if: github.ref != 'refs/heads/next' && github.ref != 'refs/heads/master'
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: branch-history
|
||||
run: |
|
||||
# We override origin to make sure we point to the main repo.
|
||||
# This is to have consistent test results on PRs from forks.
|
||||
git remote remove origin
|
||||
git remote add origin https://github.com/mfem/mfem.git
|
||||
git checkout -b gh-actions-branch-history
|
||||
./config/githooks/pre-push --history
|
||||
+39
-213
@@ -9,7 +9,6 @@
|
||||
# Object and library files
|
||||
*.o
|
||||
/libmfem.*
|
||||
/miniapps/common/libmfem-common.*
|
||||
|
||||
# CMake generated files
|
||||
CMakeCache.txt
|
||||
@@ -26,12 +25,9 @@ CMakeFiles/
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
doc/CodeDocumentation
|
||||
doc/undoc.log
|
||||
doc/warnings.log
|
||||
|
||||
# Temporary files created by the tests.
|
||||
*.stderr
|
||||
@@ -45,21 +41,16 @@ doc/warnings.log
|
||||
|
||||
# Example and miniapp binaries and outputs
|
||||
|
||||
examples/ex[0-9]
|
||||
examples/ex[0-9]p
|
||||
examples/ex[1-9]
|
||||
examples/ex[1-9]p
|
||||
examples/ex1[04-9]
|
||||
examples/ex1[0-9]p
|
||||
examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
examples/ex30
|
||||
examples/ex30p
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
examples/mesh.*
|
||||
examples/ex5.mesh
|
||||
examples/Example5*
|
||||
examples/ParaView
|
||||
examples/Example9*
|
||||
examples/Example15*
|
||||
examples/Example16*
|
||||
@@ -67,9 +58,6 @@ examples/sphere_refined.*
|
||||
examples/sol.*
|
||||
examples/sol_u.*
|
||||
examples/sol_p.*
|
||||
examples/sol_r.*
|
||||
examples/sol_i.*
|
||||
examples/ex6p-checkpoint.*
|
||||
examples/ex9.mesh
|
||||
examples/ex9-mesh.*
|
||||
examples/ex9-init.*
|
||||
@@ -78,10 +66,6 @@ examples/deformed.*
|
||||
examples/velocity.*
|
||||
examples/elastic_energy.*
|
||||
examples/mode_*
|
||||
examples/ex5-p-*.bp
|
||||
examples/ex9-p-*.bp
|
||||
examples/ex12-p-*.bp
|
||||
examples/ex16-p-*.bp
|
||||
examples/ex16.mesh
|
||||
examples/ex16-mesh.*
|
||||
examples/ex16-init.*
|
||||
@@ -92,73 +76,12 @@ examples/vortex-?-init.*
|
||||
examples/vortex-?-final.*
|
||||
examples/deformation.*
|
||||
examples/pressure.*
|
||||
examples/ex20.dat
|
||||
examples/ex20p_?????.dat
|
||||
examples/gnuplot_ex20.inp
|
||||
examples/gnuplot_ex20p.inp
|
||||
examples/ex21*.mesh
|
||||
examples/ex21*.sol
|
||||
examples/ex21p_*.*
|
||||
examples/ex23-*.gf
|
||||
examples/ex23*.mesh
|
||||
examples/Example23*
|
||||
examples/ex25.mesh
|
||||
examples/ex25-*.gf
|
||||
examples/ex25p-*.*
|
||||
examples/ex28_*
|
||||
examples/ex28p_*
|
||||
examples/flux.*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
examples/amgx/.logamgx
|
||||
examples/amgx/refined.mesh
|
||||
examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/gingko/ex1
|
||||
examples/gingko/refined.mesh
|
||||
examples/gingko/sol.gf
|
||||
examples/gingko/mesh.*
|
||||
examples/gingko/sol.*
|
||||
|
||||
examples/hiop/ex9
|
||||
examples/hiop/ex9p
|
||||
examples/hiop/ex9.mesh
|
||||
examples/hiop/ex9-mesh.*
|
||||
examples/hiop/ex9-init.*
|
||||
examples/hiop/ex9-final.*
|
||||
|
||||
examples/petsc/ex[1-69]p
|
||||
examples/petsc/ex1[0-1]p
|
||||
examples/petsc/mesh.*
|
||||
examples/petsc/sol.*
|
||||
examples/petsc/sol_p.*
|
||||
examples/petsc/sol_u.*
|
||||
examples/petsc/Example5*
|
||||
examples/petsc/ex9.mesh
|
||||
examples/petsc/ex9-mesh.*
|
||||
examples/petsc/ex9-init.*
|
||||
examples/petsc/ex9-final.*
|
||||
examples/petsc/Example9*
|
||||
examples/petsc/deformed.*
|
||||
examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
examples/pumi/sol.*
|
||||
examples/pumi/displaced.mesh
|
||||
|
||||
examples/sundials/ex9
|
||||
examples/sundials/ex1[06]
|
||||
examples/sundials/ex9p
|
||||
examples/sundials/ex1[06]p
|
||||
|
||||
examples/sundials/ex9.mesh
|
||||
examples/sundials/ex9-mesh.*
|
||||
examples/sundials/ex9-init.*
|
||||
@@ -173,169 +96,72 @@ examples/sundials/ex16-init.*
|
||||
examples/sundials/ex16-final.*
|
||||
examples/sundials/Example16*
|
||||
|
||||
examples/superlu/ex1p
|
||||
examples/superlu/mesh.*
|
||||
examples/superlu/sol.*
|
||||
examples/petsc/ex[1-69]p
|
||||
examples/petsc/ex10p
|
||||
|
||||
miniapps/adjoint/cvsRoberts_ASAi_dns
|
||||
miniapps/adjoint/adjoint_advection_diffusion
|
||||
examples/petsc/mesh.*
|
||||
examples/petsc/sol.*
|
||||
examples/petsc/sol_p.*
|
||||
examples/petsc/sol_u.*
|
||||
examples/petsc/Example5*
|
||||
examples/petsc/ex9-mesh.*
|
||||
examples/petsc/ex9-init.*
|
||||
examples/petsc/ex9-final.*
|
||||
examples/petsc/Example9*
|
||||
examples/petsc/deformed.*
|
||||
examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
examples/pumi/sol.*
|
||||
examples/pumi/displaced.mesh
|
||||
|
||||
miniapps/electromagnetics/volta
|
||||
miniapps/electromagnetics/tesla
|
||||
miniapps/electromagnetics/maxwell
|
||||
miniapps/electromagnetics/joule
|
||||
|
||||
miniapps/electromagnetics/Volta-AMR*
|
||||
miniapps/electromagnetics/Tesla-AMR*
|
||||
miniapps/electromagnetics/Maxwell-Parallel*
|
||||
miniapps/electromagnetics/Joule_*
|
||||
|
||||
miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
miniapps/gslib/findpts
|
||||
miniapps/gslib/pfindpts
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
miniapps/meshing/toroid
|
||||
miniapps/meshing/twist
|
||||
miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/shaper.mesh
|
||||
miniapps/meshing/extruder.mesh
|
||||
miniapps/meshing/trimmer.mesh
|
||||
miniapps/meshing/optimized*
|
||||
miniapps/meshing/perturbed*
|
||||
miniapps/meshing/polar-nc.mesh
|
||||
|
||||
miniapps/mtop/parheat
|
||||
miniapps/mtop/ParHeat*
|
||||
miniapps/mtop/seqheat
|
||||
miniapps/mtop/SeqHeat*
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
|
||||
miniapps/autodiff/paradiff
|
||||
miniapps/autodiff/seqadiff
|
||||
miniapps/autodiff/seqtest
|
||||
miniapps/autodiff/par_example
|
||||
miniapps/autodiff/seq_example
|
||||
miniapps/autodiff/seq_test
|
||||
miniapps/autodiff/Exampl*
|
||||
miniapps/performance/refined.mesh
|
||||
miniapps/performance/mesh.*
|
||||
miniapps/performance/sol.*
|
||||
|
||||
miniapps/navier/navier_mms
|
||||
miniapps/navier/navier_kovasznay
|
||||
miniapps/navier/navier_kovasznay_vs
|
||||
miniapps/navier/navier_tgv
|
||||
miniapps/navier/navier_shear
|
||||
miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/ex1
|
||||
miniapps/nurbs/ex1p
|
||||
miniapps/nurbs/ex11p
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
miniapps/performance/refined.mesh
|
||||
miniapps/performance/mesh.*
|
||||
miniapps/performance/sol.*
|
||||
|
||||
miniapps/shifted/distance
|
||||
miniapps/shifted/ParaViewDistance
|
||||
miniapps/shifted/diffusion
|
||||
miniapps/shifted/diffusion.mesh
|
||||
miniapps/shifted/diffusion.gf
|
||||
miniapps/shifted/ParaViewDiffusion
|
||||
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/get-values
|
||||
|
||||
miniapps/toys/automata
|
||||
miniapps/toys/life
|
||||
miniapps/toys/mandel
|
||||
miniapps/toys/rubik
|
||||
miniapps/toys/snake
|
||||
miniapps/toys/lissajous
|
||||
miniapps/toys/mondrian
|
||||
miniapps/toys/snake-init.mesh
|
||||
miniapps/toys/snake-user.mesh
|
||||
miniapps/toys/snake-joined.mesh
|
||||
miniapps/toys/snake-c*.mesh
|
||||
miniapps/toys/automata.gf
|
||||
miniapps/toys/automata.mesh
|
||||
miniapps/toys/rubik-init.mesh
|
||||
miniapps/toys/mandel.mesh
|
||||
miniapps/toys/life.gf
|
||||
miniapps/toys/life.mesh
|
||||
miniapps/toys/lissajous.mesh
|
||||
miniapps/toys/lissajous.gf
|
||||
miniapps/toys/mondrian.mesh
|
||||
|
||||
miniapps/solvers/block-solvers
|
||||
miniapps/solvers/lor_solvers
|
||||
miniapps/solvers/plor_solvers
|
||||
miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
tests/unit/punit_tests
|
||||
tests/unit/cunit_tests
|
||||
tests/unit/pcunit_tests
|
||||
tests/unit/sedov_tests_*
|
||||
tests/unit/psedov_tests_*
|
||||
tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
tests/benchmarks/bench_tmop
|
||||
tests/benchmarks/bench_vector
|
||||
tests/benchmarks/bench_virtuals
|
||||
|
||||
# Test script output
|
||||
tests/scripts/*.err
|
||||
tests/scripts/*.out
|
||||
tests/scripts/*.msg
|
||||
|
||||
# Other tests
|
||||
tests/convergence/rates
|
||||
tests/convergence/prates
|
||||
tests/par-mesh-format/ex1p
|
||||
|
||||
# VPATH builds
|
||||
build-*/*
|
||||
|
||||
# PETSc automated build
|
||||
petsc-build/*
|
||||
pkg.gitcommit
|
||||
|
||||
# Jupyter Notebook Checkpoints
|
||||
.ipynb_checkpoints
|
||||
|
||||
@@ -1,96 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# General GitLab pipelines configurations for supercomputers and Linux clusters
|
||||
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
|
||||
# LLNL-specific!
|
||||
|
||||
|
||||
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
|
||||
# the preceding stages to complete before to start. However, we sometimes use
|
||||
# the "needs" keyword and express the DAG of jobs for more efficiency.
|
||||
# - We use setup and setup_baseline phases to download content outside of mfem
|
||||
# directory.
|
||||
# - Allocate/Release is where quartz resource are allocated/released once for all.
|
||||
# - Build and Test is where we build and MFEM for multiple toolchains.
|
||||
# - Baseline_checks gathers baseline-type test suites execution
|
||||
# - Baseline_publish, only available on master, allows to update baseline
|
||||
# results
|
||||
stages:
|
||||
- sub-pipelines
|
||||
|
||||
variables:
|
||||
CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
|
||||
USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
|
||||
SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
|
||||
AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
|
||||
# MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
|
||||
# used in '.gitlab/configs/<machine>-config.yml':
|
||||
MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
|
||||
|
||||
# Defines the default choice for updating the saved baseline results. By default
|
||||
# the baseline can only be updated from the master branch. This variable offers
|
||||
# the option to manually ask for rebaselining from another branch if necessary.
|
||||
REBASELINE: "NO"
|
||||
AUTOTEST: "NO"
|
||||
# AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
|
||||
# * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
|
||||
# files to the MFEM/autotest repo.
|
||||
# * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
|
||||
# files to the MFEM/autotest repo. Instead they will just show the contents
|
||||
# of the report files and remove them.
|
||||
AUTOTEST_COMMIT: "YES"
|
||||
|
||||
# Trigger subpipelines:
|
||||
quartz-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/quartz-build-and-test.yml
|
||||
strategy: depend
|
||||
|
||||
quartz-baseline:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
REBASELINE: "${REBASELINE}"
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/quartz-baseline.yml
|
||||
strategy: depend
|
||||
|
||||
lassen-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/lassen-build-and-test.yml
|
||||
strategy: depend
|
||||
|
||||
corona-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/corona-build-and-test.yml
|
||||
strategy: depend
|
||||
@@ -1,94 +0,0 @@
|
||||
Finite Element Discretization Library
|
||||
__
|
||||
_ __ ___ / _| ___ _ __ ___
|
||||
| '_ ` _ \ | |_ / _ \| '_ ` _ \
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
|
||||
|
||||
This directory contains most of the GitLab CI configuration. MFEM runs both PR
|
||||
and nightly testing on GitLab.
|
||||
|
||||
# Structure
|
||||
|
||||
## Top level
|
||||
|
||||
The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo.
|
||||
This file only defines one stage, in which we trigger several
|
||||
sub-pipelines.
|
||||
|
||||
We use sub-pipelines to isolate the test for one combination of `machine`
|
||||
and `test type`.
|
||||
|
||||
Machines typically include:
|
||||
|
||||
* Quartz: Intel bi-socket x86
|
||||
* Lassen: Power9 + Nvidia GPU
|
||||
* Corona: AMD GPU
|
||||
|
||||
Test types include:
|
||||
|
||||
* Build and test: Spack driven build of dependencies, mfem build, mfem
|
||||
test
|
||||
* Baseline: Script driven build of dependencies, thorough testing
|
||||
|
||||
⚠️ The sub-pipeline design allows to add a new machine or a new test type without
|
||||
altering the scheduling, execution and displaying of the others.
|
||||
|
||||
## Sub-pipelines
|
||||
|
||||
Each file is this directory is the root configuration file for one
|
||||
sub-pipeline. The naming reflects the corresponding couple (`machine`,
|
||||
`test_type`).
|
||||
|
||||
Those files define the *stages* and the *jobs* for the sub-pipeline. They
|
||||
also contain any configuration that cannot be shared. For the most part
|
||||
though, the configuration is shared and is placed in `.gitlab/configs`.
|
||||
|
||||
We try to keep scripts out of the CI config and share them among similar
|
||||
jobs. They are gathered in `.gitlab/scripts`.
|
||||
|
||||
## Scripts
|
||||
|
||||
Scripts specific to the CI only are in `.gitlab/scripts`. It is best practice
|
||||
to keep scripts outside the CI configuration (no bash scripts embedded in a
|
||||
yaml file) because it helps with readability, maintenance and also with
|
||||
transition to another CI system.
|
||||
|
||||
⚠️ Most of the scripts there are driven by environment variables and do not have a
|
||||
usage function. This should be improved.
|
||||
|
||||
|
||||
# More testing
|
||||
|
||||
## Adding a new target to a build_and_test pipeline
|
||||
|
||||
`build_and_test` pipelines rely on Spack to install dependencies. Spack is
|
||||
driven by Uberenv which helps freezing Spack configuration: the goal being to
|
||||
point to specific commit in Spack and isolate its configuration so that it is
|
||||
not influenced by the user environment. More documentation about this can be
|
||||
found in `tests/gitlab`.
|
||||
|
||||
In the end, the MFEM target for which to build the dependencies is expressed
|
||||
with a spack spec of MFEM, within the limits permitted by the MFEM spack
|
||||
package.
|
||||
|
||||
In any build-and-test sub-pipeline a job basically consists in defining the
|
||||
spack spec to use. Adding a job on quartz for example resumes to:
|
||||
|
||||
```yaml
|
||||
<job_name>:
|
||||
variables:
|
||||
SPEC: "<spack_spec>"
|
||||
extends: .build_and_test_on_quartz
|
||||
```
|
||||
|
||||
The remaining and non trivial work is to make sure this spec is working. To
|
||||
test a spec before adding it, or reproduce a CI configuration, please refer to
|
||||
`tests/gitlab/reproduce-ci-jobs-interactively.md`.
|
||||
|
||||
⚠️ It is assumed that the spack spec applies to `mfem@develop`. That's why in the
|
||||
CI all the specs start with the compiler or the variants to apply to mfem. The
|
||||
mechanism still works with a full spec.
|
||||
@@ -1,36 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# We define the following GitLab pipeline variables:
|
||||
variables:
|
||||
|
||||
# The path to the shared resource between all jobs. For example, external
|
||||
# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
|
||||
# once for all targets, so that build happen here. The BUILD_ROOT is unique to
|
||||
# the pipeline, preventing any form of concurrency with other pipelines. This
|
||||
# also means that the BUILD_ROOT directory will never be cleaned.
|
||||
# TODO: add a clean-up mechanism
|
||||
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
|
||||
|
||||
# On LLNL's quartz, there is only one allocation shared among jobs in order to
|
||||
# save time and resource. This allocation has to be uniquely named so that we
|
||||
# are sure to retrieve it.
|
||||
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
|
||||
|
||||
# Git repositories used in the pipeline
|
||||
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
|
||||
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
|
||||
AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
|
||||
MFEM_DATA_REPO: https://github.com/mfem/data.git
|
||||
|
||||
# Directory used to place artifacts.
|
||||
ARTIFACTS_DIR: artifacts
|
||||
SLURM_OVERLAP: 1
|
||||
@@ -1,59 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipeline configuration for the Corona machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: corona
|
||||
|
||||
.on_corona:
|
||||
tags:
|
||||
- shell
|
||||
- corona
|
||||
rules:
|
||||
# Don’t run corona jobs if...
|
||||
# Note: This makes corona an "opt-in" machine. To activate builds on corona
|
||||
# for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
|
||||
# "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
|
||||
# pipeline there.
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
|
||||
when: never
|
||||
# Don’t run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always release resource
|
||||
- if: '$CI_JOB_NAME =~ /release_resource/'
|
||||
when: always
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
# Default is to run if previous stage succeeded
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic corona build job, extending build script
|
||||
.build_and_test_on_corona:
|
||||
extends: [.on_corona]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=12
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -1,49 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Lassen machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: lassen
|
||||
|
||||
.on_lassen:
|
||||
tags:
|
||||
- shell
|
||||
- lassen
|
||||
rules:
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
- when: on_success
|
||||
|
||||
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
|
||||
# pre-allocation the same way slurm does. We use pdebug queue on lassen
|
||||
# to speed-up the allocation. However this would not be scalable to
|
||||
# multiple builds.
|
||||
.build_and_test_on_lassen:
|
||||
extends: [.on_lassen]
|
||||
stage: build_and_test
|
||||
script:
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
|
||||
- lalloc 1 -W 30 -q pdebug tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
needs: [setup]
|
||||
@@ -1,55 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Quartz machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: quartz
|
||||
|
||||
.on_quartz:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
rules:
|
||||
# Don't run quartz jobs if...
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"'
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always release resource
|
||||
- if: '$CI_JOB_NAME =~ /release_resource/'
|
||||
when: always
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
# Default is to run if previous stage succeeded
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic quartz build job, extending build script
|
||||
.build_and_test_on_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=12
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 30 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -1,81 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Jobs report
|
||||
.report_job_success:
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# Report SUCCESS while holding the file lock on 'autotest.lock'.
|
||||
# The next script uses the following environment variables:
|
||||
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
|
||||
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
|
||||
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
|
||||
err=$?
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
.report_job_failure:
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# Report FAILURE while holding the file lock on 'autotest.lock'.
|
||||
# The next script uses the following environment variables:
|
||||
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
|
||||
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
|
||||
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
|
||||
err=$?
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,72 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# The setup_baseline job doesn't rely on MFEM git repo. It prepares a
|
||||
# pipeline-wide working directory downloading/updating external repos.
|
||||
# TODO:
|
||||
# updating tests and tpls is not necessary anymore since pipelines are now
|
||||
# using unique directories so repo are never shared with another pipeline. This
|
||||
# is not memory efficient (we keep a lot of data), hence this reminder.
|
||||
setup_baseline:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
#
|
||||
# Setup ${BUILD_ROOT}/tpls and ${BUILD_ROOT}/tests:
|
||||
#
|
||||
- echo "MACHINE_NAME = ${MACHINE_NAME}"
|
||||
- echo "REBASELINE = ${REBASELINE}"
|
||||
- echo "AUTOTEST = ${AUTOTEST}"
|
||||
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
|
||||
- echo "BUILD_ROOT ${BUILD_ROOT}"
|
||||
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
|
||||
- if [ ! -d "tpls" ]; then git clone ${TPLS_REPO}; fi
|
||||
- if [ ! -d "tests" ]; then git clone ${TESTS_REPO}; fi
|
||||
- cd tpls && git pull && cd ..
|
||||
- cd tests && git pull origin && cd ..
|
||||
#
|
||||
# Setup ${AUTOTEST_ROOT}/autotest:
|
||||
#
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
|
||||
- command -v flock || echo "Required command 'flock' not found"
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# clone/update the autotest repo while holding the file lock on
|
||||
# 'autotest.lock'
|
||||
err=0
|
||||
if [[ ! -d "autotest" ]]; then
|
||||
git clone ${AUTOTEST_REPO}
|
||||
else
|
||||
cd autotest && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,94 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
|
||||
# script then symlinks the repo to the parent directory of the MFEM source
|
||||
# directory. Unit tests that depend on the mfem/data repo will then detect that
|
||||
# this directory is present and be enabled.
|
||||
setup:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
#
|
||||
# Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
|
||||
# and '.gitlab/configs/<machine>-config.yml'
|
||||
#
|
||||
- echo "MACHINE_NAME = ${MACHINE_NAME}"
|
||||
- echo "AUTOTEST = ${AUTOTEST}"
|
||||
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
|
||||
- echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
|
||||
- mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
|
||||
- command -v flock || echo "Required command 'flock' not found"
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (mfem-data.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
# clone/update the mfem/data repo while holding the file lock on
|
||||
# 'mfem-data.lock'
|
||||
err=0
|
||||
if [[ ! -d "mfem-data" ]]; then
|
||||
git clone ${MFEM_DATA_REPO} "mfem-data"
|
||||
else
|
||||
cd "mfem-data" && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> mfem-data.lock
|
||||
#
|
||||
# Setup ${AUTOTEST_ROOT}/autotest:
|
||||
#
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# clone/update the autotest repo while holding the file lock on
|
||||
# 'autotest.lock'
|
||||
err=0
|
||||
if [[ ! -d "autotest" ]]; then
|
||||
git clone ${AUTOTEST_REPO}
|
||||
else
|
||||
cd autotest && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,67 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- allocate_resource
|
||||
- build_and_test
|
||||
- release_resource_and_report
|
||||
|
||||
# Slurm shared allocation
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_corona
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --partition=mi60 --time=30 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
needs: [setup]
|
||||
|
||||
# Build and test jobs, simply provide a spec
|
||||
rocm_gcc_8.3.1:
|
||||
variables:
|
||||
SPEC: "@develop%gcc@8.3.1+rocm amdgpu_target=gfx906"
|
||||
extends: .build_and_test_on_corona
|
||||
needs: [allocate_resource]
|
||||
|
||||
# Release slurm allocation
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_corona
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
|
||||
needs: [rocm_gcc_8.3.1]
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_corona
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_corona
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/corona-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,39 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_8:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: report
|
||||
extends:
|
||||
- .on_lassen
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: report
|
||||
extends:
|
||||
- .on_lassen
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/lassen-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,133 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
variables:
|
||||
BASELINE_TEST: baseline
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- baseline_check
|
||||
- baseline_report
|
||||
- cleanup
|
||||
- baseline_publish
|
||||
|
||||
baselinecheck_mfem_intel_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_check
|
||||
variables:
|
||||
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
|
||||
# when call the runtest script in MFEM test repo.
|
||||
# Note: the value must be consistent with the setup performed in
|
||||
# .gitlab/configs/setup-baseline.yml.
|
||||
TPLS_DIR: ${BUILD_ROOT}/tpls
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${TPLS_DIR}
|
||||
# Used by the tests in MFEM/tests:
|
||||
- export MFEM_TEST_NP=32
|
||||
# The next script uses the following environment variables:
|
||||
# * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
|
||||
# * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
|
||||
- .gitlab/scripts/baseline
|
||||
artifacts:
|
||||
when: always
|
||||
paths:
|
||||
- ${ARTIFACTS_DIR}
|
||||
allow_failure: true
|
||||
|
||||
cleanup:
|
||||
extends: .on_quartz
|
||||
stage: cleanup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_report
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Aquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# ----------------------
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
|
||||
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
|
||||
fi
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
err=$?
|
||||
# ----------------------
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
baselinepublish_mfem_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_publish
|
||||
rules:
|
||||
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
|
||||
- if: '$REBASELINE == "YES"'
|
||||
when: manual
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${PWD}
|
||||
- echo ${ARTIFACTS_DIR}
|
||||
- ls -lA ${ARTIFACTS_DIR}
|
||||
- .gitlab/scripts/rebaseline
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/quartz-config.yml
|
||||
- local: .gitlab/configs/setup-baseline.yml
|
||||
@@ -1,99 +0,0 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- allocate_resource
|
||||
- build_and_test
|
||||
- release_resource_and_report
|
||||
|
||||
# Allocate
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --partition=pdebug --time=30 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_4_9_3:
|
||||
variables:
|
||||
SPEC: "%gcc@4.9.3 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_quartz
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_quartz
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/quartz-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,88 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# locals
|
||||
glob_err=${BASELINE_TEST}.err
|
||||
base=${BASELINE_TEST}-${SYS_TYPE}
|
||||
base_diff=${base}.diff
|
||||
base_patch=${base}.patch
|
||||
base_out=${base}.out
|
||||
artifacts_path=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}
|
||||
|
||||
# prepare
|
||||
cd ${BUILD_ROOT} || \
|
||||
{ echo "Invalid BUILD_ROOT=$BUILD_ROOT"; exit 1; }
|
||||
ln -snf ${CI_PROJECT_DIR} mfem
|
||||
cd tests
|
||||
[[ -d _${BASELINE_TEST} ]] && rm -rf _${BASELINE_TEST}
|
||||
mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
srun --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
srun --nodes=1 -t 60 -p mi60 ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
|
||||
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
if [[ -s ${glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${glob_err} file content";
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
exit 1;
|
||||
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${base_patch} or ${base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
# We create a .err file, because that's how we signal that there was a diff.
|
||||
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
|
||||
fi
|
||||
|
||||
if [[ ! -s ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
@@ -1,49 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# There will be collision between corona and quartz baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}
|
||||
#ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}-${MACHINE_NAME}
|
||||
|
||||
PATCH_FILE=${ARTIFACT_PATH}.patch
|
||||
FULL_FILE=${ARTIFACT_PATH}.out
|
||||
DIFF_FILE=${ARTIFACT_PATH}.diff
|
||||
|
||||
# There will be collision between corona and quartz baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
SAVED_NAME=baseline-${SYS_TYPE}.saved
|
||||
#SAVED_NAME=baseline-${SYS_TYPE}-${MACHINE_NAME}.saved
|
||||
|
||||
cd ${BUILD_ROOT}/tests
|
||||
|
||||
if [[ ! -f "${DIFF_FILE}" ]]
|
||||
then
|
||||
echo "Nothing to be done: no relevant change in baseline"
|
||||
exit 0
|
||||
elif [[ -f "${PATCH_FILE}" ]]
|
||||
then
|
||||
patch "${SAVED_NAME}" < "${PATCH_FILE}"
|
||||
elif [[ -f "${FULL_FILE}" ]]
|
||||
then
|
||||
cp "${FULL_FILE}" "${SAVED_NAME}"
|
||||
else
|
||||
echo "File missing: expected ${PATCH_FILE} or ${FULL_FILE}"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
git add "${SAVED_NAME}"
|
||||
git commit -m "${SYS_TYPE} (${MACHINE_NAME}) rebaselined in GitLab pipeline ${CI_PIPELINE_ID}"
|
||||
git push origin master
|
||||
@@ -1,45 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
echo "Runs if there was at least one failure on ${MACHINE_NAME}"
|
||||
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
|
||||
|
||||
printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
|
||||
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
|
||||
|
||||
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
# Create 'autotest-email.html' to indicate failure:
|
||||
cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
|
||||
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
echo "Can only run if all the ${MACHINE_NAME} jobs passed"
|
||||
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
|
||||
|
||||
printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
|
||||
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
|
||||
|
||||
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# This script takes a seed for a directory name and appends it with a counter
|
||||
# incremented until it can create a new directory with it.
|
||||
|
||||
# Usage:
|
||||
#
|
||||
# Expects 1 argument: a string that is use as a seed for the directory name.
|
||||
#
|
||||
# > rundir="desired_name"
|
||||
# > rundir=$(./safe_create_rundir $rundir)
|
||||
|
||||
set -o errexit
|
||||
set -o nounset
|
||||
|
||||
rundir=${1:-""}
|
||||
if [[ -z ${rundir} ]]; then
|
||||
>&2 echo "The script expects a string as argument for directory creation."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
if ! mkdir ${rundir}; then
|
||||
n=1
|
||||
while ! mkdir ${rundir}_${n}
|
||||
do
|
||||
n=$((n+1))
|
||||
done
|
||||
rundir=${rundir}_${n}
|
||||
fi
|
||||
|
||||
echo $rundir
|
||||
+263
@@ -0,0 +1,263 @@
|
||||
sudo: false
|
||||
|
||||
language: cpp
|
||||
|
||||
matrix:
|
||||
include:
|
||||
#
|
||||
# Linux
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
env: DEBUG=YES
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
env: DEBUG=NO
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=test
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
addons:
|
||||
apt:
|
||||
# sources:
|
||||
# - ubuntu-toolchain-r-test
|
||||
packages:
|
||||
# GCC 4.9
|
||||
# - g++-4.9
|
||||
# MPICH
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
# OpenMPI
|
||||
# - openmpi-bin
|
||||
# - libopenmpi-dev
|
||||
env: DEBUG=YES
|
||||
MPI=YES
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
NPROCS=2
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
#
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
addons:
|
||||
apt:
|
||||
# sources:
|
||||
# - ubuntu-toolchain-r-test
|
||||
packages:
|
||||
# GCC 4.9
|
||||
# - g++-4.9
|
||||
# MPICH
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
# OpenMPI
|
||||
# - openmpi-bin
|
||||
# - libopenmpi-dev
|
||||
env: DEBUG=NO
|
||||
MPI=YES
|
||||
CODECOV=YES
|
||||
MFEM_TEST_TARGET=test
|
||||
NPROCS=2
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
#
|
||||
# Mac OS X
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=YES
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=NO
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=test
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=YES
|
||||
MPI=YES
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
NPROCS=4
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
#
|
||||
- os: osx
|
||||
# osx_image: xcode7.3
|
||||
compiler: clang
|
||||
env: DEBUG=NO
|
||||
MPI=YES
|
||||
CODECOV=YES
|
||||
MFEM_TEST_TARGET=test
|
||||
NPROCS=4
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
|
||||
- $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a ..; rm -rf *; mv ../libmetis.a .
|
||||
|
||||
|
||||
before_install:
|
||||
# No addon for brew yet, have to install OSX packages this way.
|
||||
# - if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
|
||||
# brew install open-mpi;
|
||||
# fi
|
||||
|
||||
# On Mac OS X, build and cache OpenMPI 2.1.1:
|
||||
- if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
|
||||
if [ ! -e $HOME/local-cached/bin/mpicc ]; then
|
||||
mkdir -p $HOME/builds && cd $HOME/builds &&
|
||||
wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.bz2 &&
|
||||
tar jxf openmpi-2.1.1.tar.bz2 &&
|
||||
mkdir openmpi-build && cd openmpi-build &&
|
||||
../openmpi-2.1.1/configure --prefix=$HOME/local-cached &&
|
||||
make -j3 all && make install;
|
||||
fi;
|
||||
PATH=$HOME/local-cached/bin:$PATH;
|
||||
cd $TRAVIS_BUILD_DIR;
|
||||
fi
|
||||
|
||||
# Update environment to find g++ 4.9 installation first.
|
||||
# - if [ $TRAVIS_OS_NAME == "linux" ]; then
|
||||
# mkdir -p latest-gcc-symlinks;
|
||||
# ln -s /usr/bin/g++-4.9 latest-gcc-symlinks/g++;
|
||||
# ln -s /usr/bin/gcc-4.9 latest-gcc-symlinks/gcc;
|
||||
# ln -s /usr/bin/gcov-4.9 latest-gcc-symlinks/gcov;
|
||||
# export PATH=$PWD/latest-gcc-symlinks:$PATH;
|
||||
# fi
|
||||
|
||||
# Install tool to upload code coverage reports to coveralls.io
|
||||
- if [ "$CODECOV" == "YES" ]; then
|
||||
export PYTHONUSERBASE=$HOME/local;
|
||||
pip install --user cpp-coveralls;
|
||||
pip install --user pyyaml;
|
||||
PATH=$HOME/local/bin:$PATH;
|
||||
fi
|
||||
|
||||
install:
|
||||
# Set MPI compilers, print compiler version
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ "$TRAVIS_OS_NAME" == "linux" ]; then
|
||||
export MPICH_CC="$CC";
|
||||
export MPICH_CXX="$CXX";
|
||||
else
|
||||
export OMPI_CC="$CC";
|
||||
export OMPI_CXX="$CXX";
|
||||
mpic++ --showme:version;
|
||||
fi;
|
||||
mpic++ -v;
|
||||
else
|
||||
$CXX -v;
|
||||
fi
|
||||
|
||||
# Back out of the mfem directory to install the libraries
|
||||
- cd ..
|
||||
|
||||
# hypre
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e hypre-2.10.0b/src/hypre/lib/libHYPRE.a ]; then
|
||||
wget https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz --no-check-certificate;
|
||||
rm -rf hypre-2.10.0b;
|
||||
tar xvzf hypre-2.10.0b.tar.gz;
|
||||
cd hypre-2.10.0b/src;
|
||||
./configure --disable-fortran --without-fei CC=mpicc CXX=mpic++;
|
||||
make -j3;
|
||||
cd ../..;
|
||||
else
|
||||
echo "Reusing cached hypre-2.10.0b/";
|
||||
fi;
|
||||
else
|
||||
echo "Serial build, not using hypre";
|
||||
fi
|
||||
|
||||
# METIS
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e metis-4.0/libmetis.a ]; then
|
||||
wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz;
|
||||
tar xvzf metis-4.0.3.tar.gz;
|
||||
make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
|
||||
rm -rf metis-4.0;
|
||||
mv metis-4.0.3 metis-4.0;
|
||||
else
|
||||
echo "Reusing cached metis-4.0/";
|
||||
fi;
|
||||
fi
|
||||
|
||||
script:
|
||||
# Compiler
|
||||
- if [ $MPI == "YES" ]; then
|
||||
export MYCXX=mpic++;
|
||||
else
|
||||
export MYCXX="$CXX";
|
||||
fi
|
||||
|
||||
# Print the compiler version
|
||||
- $MYCXX -v
|
||||
|
||||
# Set some variables
|
||||
- cd $TRAVIS_BUILD_DIR;
|
||||
CPPFLAGS="";
|
||||
SKIP_TEST_DIRS="";
|
||||
if [ "$CODECOV" == "YES" ]; then
|
||||
CPPFLAGS="--coverage -g";
|
||||
fi;
|
||||
if [ "$CXX" == "clang++" ]; then
|
||||
export MFEM_PERF_SW=clang;
|
||||
fi
|
||||
|
||||
# Configure the library
|
||||
- make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG MFEM_CXX="$MYCXX"
|
||||
MFEM_MPI_NP=$NPROCS CPPFLAGS="$CPPFLAGS"
|
||||
# Show the configuration
|
||||
- make info
|
||||
# Build the library
|
||||
- make -j3
|
||||
# Build the examples and the miniapps
|
||||
- make -j3 all
|
||||
# Run tests
|
||||
- make $MFEM_TEST_TARGET SKIP_TEST_DIRS="$SKIP_TEST_DIRS"
|
||||
|
||||
after_success:
|
||||
- if [ "$CODECOV" == "YES" ]; then
|
||||
coveralls --include fem --include general --include linalg --include
|
||||
mesh --exclude /usr --gcov-options '\-lp' --root $TRAVIS_BUILD_DIR;
|
||||
fi
|
||||
@@ -1,66 +0,0 @@
|
||||
cff-version: 1.2.0
|
||||
message: "If you use MFEM, please cite it as follows."
|
||||
authors:
|
||||
- family-names: "MFEM Team"
|
||||
title: "MFEM: Modular Finite Element Methods [Software]"
|
||||
doi: 10.11578/dc.20171025.1248
|
||||
url: "https://mfem.org"
|
||||
preferred-citation:
|
||||
type: article
|
||||
authors:
|
||||
- family-names: "Anderson"
|
||||
given-names: "Robert"
|
||||
orcid: "https://orcid.org/0000-0002-3508-9944"
|
||||
- family-names: "Andrej"
|
||||
given-names: "Julian"
|
||||
orcid: "https://orcid.org/0000-0001-7661-4840"
|
||||
- family-names: "Barker"
|
||||
given-names: "Andrew"
|
||||
orcid: "https://orcid.org/0000-0003-3572-911X"
|
||||
- family-names: "Bramwell"
|
||||
given-names: "Jamie"
|
||||
- family-names: "Camier"
|
||||
given-names: "Jean-Sylvain"
|
||||
orcid: "https://orcid.org/0000-0003-2421-1999"
|
||||
- family-names: "Cerveny"
|
||||
given-names: "Jakub"
|
||||
orcid: "https://orcid.org/0000-0003-4231-2531"
|
||||
- family-names: "Dobrev"
|
||||
given-names: "Veselin"
|
||||
orcid: "https://orcid.org/0000-0003-1793-5622"
|
||||
- family-names: "Dudouit"
|
||||
given-names: "Yohann"
|
||||
orcid: "https://orcid.org/0000-0001-5831-561X"
|
||||
- family-names: "Fisher"
|
||||
given-names: "Aaron"
|
||||
- family-names: "Kolev"
|
||||
given-names: "Tzanio"
|
||||
orcid: "https://orcid.org/0000-0002-2810-3090"
|
||||
- family-names: "Pazner"
|
||||
given-names: "Will"
|
||||
orcid: "https://orcid.org/0000-0003-4885-2934"
|
||||
- family-names: "Stowell"
|
||||
given-names: "Mark"
|
||||
orcid: "https://orcid.org/0000-0002-5389-7435"
|
||||
- family-names: "Tomov"
|
||||
given-names: "Vladimir"
|
||||
orcid: "https://orcid.org/0000-0002-1846-6816"
|
||||
- family-names: "Akkerman"
|
||||
given-names: "Ido"
|
||||
orcid: "https://orcid.org/0000-0002-5937-0300"
|
||||
- family-names: "Dahm"
|
||||
given-names: "Johann"
|
||||
orcid: "https://orcid.org/0000-0001-9657-3564"
|
||||
- family-names: "Medina"
|
||||
given-names: "David"
|
||||
- family-names: "Zampini"
|
||||
given-names: "Stefano"
|
||||
orcid: "https://orcid.org/0000-0002-0435-0433"
|
||||
doi: "10.1016/j.camwa.2020.06.009"
|
||||
journal: "Computers \\& Mathematics with Applications"
|
||||
month: 1
|
||||
start: 42 # First page number
|
||||
end: 74 # Last page number
|
||||
title: "MFEM: A Modular Finite Element Methods Library"
|
||||
volume: 81
|
||||
year: 2021
|
||||
+55
-274
@@ -1,27 +1,18 @@
|
||||
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
|
||||
cmake_minimum_required(VERSION 3.1)
|
||||
cmake_minimum_required(VERSION 2.8.11)
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
# Require C++11 and disable compiler-specific extensions
|
||||
set(CMAKE_CXX_STANDARD 11)
|
||||
if (MFEM_USE_GINKGO)
|
||||
set(CMAKE_CXX_STANDARD 14)
|
||||
endif()
|
||||
set(CMAKE_CXX_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
|
||||
# Load user settings before the defaults - this way the defaults will not
|
||||
# overwrite the user set options. If the user has not set all options, we still
|
||||
# have the defaults.
|
||||
@@ -54,7 +45,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.3.1)
|
||||
set(${PROJECT_NAME}_VERSION 3.4.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -90,54 +81,6 @@ include("${CMAKE_CURRENT_SOURCE_DIR}/config/XSDKDefaults.cmake")
|
||||
|
||||
# Enable languages.
|
||||
enable_language(CXX)
|
||||
if (MINGW)
|
||||
# MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
|
||||
# 25/25p) unless we use '-std=gnu++11':
|
||||
set(CMAKE_CXX_EXTENSIONS ON)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
if (MFEM_USE_HIP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
|
||||
endif()
|
||||
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
|
||||
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
|
||||
# Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
|
||||
if (NOT CMAKE_CUDA_HOST_COMPILER)
|
||||
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
enable_language(CUDA)
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
if (MFEM_USE_GINKGO)
|
||||
set(CMAKE_CUDA_STANDARD 14)
|
||||
endif()
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CUDA_FLAGS "--expt-extended-lambda")
|
||||
if (CMAKE_VERSION VERSION_LESS 3.18.0)
|
||||
set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
|
||||
elseif (NOT CMAKE_CUDA_ARCHITECTURES)
|
||||
string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
|
||||
if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
|
||||
set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
|
||||
endif()
|
||||
else()
|
||||
set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
|
||||
endif()
|
||||
message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
|
||||
if (CMAKE_VERSION VERSION_LESS 3.12.0)
|
||||
# CMake versions 3.8 and 3.9 require this to work; 3.10 and 3.11 are not
|
||||
# tested and may not actually need this (but should be ok to keep).
|
||||
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
|
||||
"CUDA flags set for MFEM" FORCE)
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
endif()
|
||||
|
||||
if (XSDK_ENABLE_C)
|
||||
enable_language(C)
|
||||
endif()
|
||||
@@ -184,12 +127,6 @@ endif()
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MPI REQUIRED)
|
||||
set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
|
||||
if (MFEM_MPIEXEC)
|
||||
set(MPIEXEC ${MFEM_MPIEXEC})
|
||||
endif()
|
||||
if (MFEM_MPIEXEC_NP)
|
||||
set(MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
|
||||
endif()
|
||||
# Parallel MFEM depends on hypre
|
||||
find_package(HYPRE REQUIRED)
|
||||
set(MFEM_HYPRE_VERSION ${HYPRE_VERSION})
|
||||
@@ -200,13 +137,9 @@ if (MFEM_USE_MPI)
|
||||
message(FATAL_ERROR "PETSc version >= 3.8.0 is required")
|
||||
endif()
|
||||
set(PETSC_INCLUDE_DIRS ${PETSC_INCLUDES})
|
||||
if (MFEM_USE_SLEPC)
|
||||
find_package(SLEPc REQUIRED config)
|
||||
message(STATUS "Found SLEPc version ${SLEPC_VERSION}")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(PKGS_NEED_MPI SUPERLU MUMPS PETSC SLEPC STRUMPACK PUMI)
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK PUMI)
|
||||
foreach(PKG IN LISTS PKGS_NEED_MPI)
|
||||
if (MFEM_USE_${PKG})
|
||||
message(STATUS "Disabling package ${PKG} - requires MPI")
|
||||
@@ -219,17 +152,8 @@ if (MFEM_USE_METIS)
|
||||
find_package(METIS REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_GINKGO)
|
||||
find_package(Ginkgo REQUIRED)
|
||||
if (Ginkgo_FOUND)
|
||||
get_target_property(Ginkgo_INCLUDE_DIRS
|
||||
Ginkgo::ginkgo INTERFACE_INCLUDE_DIRECTORIES)
|
||||
set(Ginkgo_LIBRARIES Ginkgo::ginkgo)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# zlib
|
||||
if (MFEM_USE_ZLIB)
|
||||
# GZSTREAM -> zlib
|
||||
if (MFEM_USE_GZSTREAM)
|
||||
find_package(ZLIB REQUIRED)
|
||||
endif()
|
||||
|
||||
@@ -246,17 +170,12 @@ if (MFEM_USE_LAPACK)
|
||||
endif()
|
||||
|
||||
# OpenMP
|
||||
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
if (MFEM_USE_OPENMP)
|
||||
if (MFEM_THREAD_SAFE)
|
||||
find_package(OpenMP REQUIRED)
|
||||
else()
|
||||
message(FATAL_ERROR " *** MFEM_USE_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
|
||||
if(APPLE)
|
||||
# On macOS, the compiler needs additional help to find the <omp.h> header.
|
||||
# See issue #2642 for more information.
|
||||
include_directories(${OpenMP_CXX_INCLUDE_DIRS})
|
||||
endif(APPLE)
|
||||
endif()
|
||||
|
||||
# SuiteSparse (before SUNDIALS which may depend on KLU)
|
||||
@@ -267,14 +186,12 @@ endif()
|
||||
|
||||
# SUNDIALS
|
||||
if (MFEM_USE_SUNDIALS)
|
||||
set(SUNDIALS_COMPONENTS CVODES ARKODE KINSOL NVector_Serial)
|
||||
if (MFEM_USE_MPI)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Parallel NVector_MPIPlusX)
|
||||
if (NOT MFEM_USE_MPI)
|
||||
find_package(SUNDIALS REQUIRED NVector_Serial CVODE ARKODE KINSOL)
|
||||
else()
|
||||
find_package(SUNDIALS REQUIRED
|
||||
NVector_Serial NVector_Parallel NVector_ParHyp CVODE ARKODE KINSOL)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
# Mesquite
|
||||
@@ -291,15 +208,6 @@ if (MFEM_USE_SUPERLU)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MUMPS can only be enabled in parallel
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# STRUMPACK can only be enabled in parallel
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -309,16 +217,16 @@ if (MFEM_USE_STRUMPACK)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Gecko
|
||||
if (MFEM_USE_GECKO)
|
||||
find_package(Gecko REQUIRED)
|
||||
endif()
|
||||
|
||||
# GnuTLS
|
||||
if (MFEM_USE_GNUTLS)
|
||||
find_package(_GnuTLS REQUIRED)
|
||||
endif()
|
||||
|
||||
# GSLIB
|
||||
if (MFEM_USE_GSLIB)
|
||||
find_package(GSLIB REQUIRED)
|
||||
endif()
|
||||
|
||||
# NetCDF
|
||||
if (MFEM_USE_NETCDF)
|
||||
find_package(NetCDF REQUIRED)
|
||||
@@ -329,25 +237,13 @@ if (MFEM_USE_MPFR)
|
||||
find_package(MPFR REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CEED)
|
||||
find_package(libCEED REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_AMGX)
|
||||
find_package(AMGX REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CONDUIT)
|
||||
find_package(Conduit REQUIRED conduit relay blueprint)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_FMS)
|
||||
find_package(FMS REQUIRED fms)
|
||||
find_package(Conduit REQUIRED conduit relay blueprint )
|
||||
endif()
|
||||
|
||||
# Axom/Sidre
|
||||
if (MFEM_USE_SIDRE)
|
||||
find_package(Axom REQUIRED Axom)
|
||||
find_package(Axom REQUIRED Sidre SLIC axom_utils)
|
||||
endif()
|
||||
|
||||
# PUMI
|
||||
@@ -366,71 +262,6 @@ if (MFEM_USE_PUMI)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# HiOp optimizer
|
||||
if (MFEM_USE_HIOP)
|
||||
find_package(HIOP REQUIRED)
|
||||
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
|
||||
endif()
|
||||
|
||||
# CoDiPack package
|
||||
if (MFEM_USE_CODIPACK)
|
||||
find_package(CODIPACK REQUIRED)
|
||||
# find_package updates CODIPACK_FOUND, CODIPACK_INCLUDE_DIRS, CODIPACK_LIBRARIES
|
||||
endif()
|
||||
|
||||
# OCCA
|
||||
if (MFEM_USE_OCCA)
|
||||
find_package(OCCA REQUIRED)
|
||||
endif()
|
||||
|
||||
# RAJA
|
||||
if (MFEM_USE_RAJA)
|
||||
find_package(RAJA REQUIRED)
|
||||
endif()
|
||||
|
||||
# UMPIRE
|
||||
if (MFEM_USE_UMPIRE)
|
||||
find_package(UMPIRE REQUIRED)
|
||||
endif()
|
||||
|
||||
# GOOGLE-BENCHMARK
|
||||
if (MFEM_USE_BENCHMARK)
|
||||
find_package(Benchmark REQUIRED)
|
||||
endif()
|
||||
|
||||
# Caliper
|
||||
if (MFEM_USE_CALIPER)
|
||||
find_package(Caliper REQUIRED)
|
||||
endif()
|
||||
|
||||
# AMD HIP
|
||||
if (MFEM_USE_HIP)
|
||||
find_package(HIP REQUIRED)
|
||||
if (HIP_ARCH)
|
||||
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
|
||||
list(APPEND HIP_HIPCC_FLAGS "--amdgpu-target=${HIP_ARCH}")
|
||||
if (MFEM_USE_GINKGO)
|
||||
list(APPEND HIP_HIPCC_FLAGS "-std=c++14")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# ADIOS2 for parallel I/O
|
||||
if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
endif()
|
||||
|
||||
# MFEM_TIMER_TYPE
|
||||
if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
if (APPLE)
|
||||
@@ -454,11 +285,9 @@ endif()
|
||||
# With newer versions of SuiteSparse which include METIS header using 64-bit
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS PETSC
|
||||
SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB NETCDF
|
||||
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
|
||||
CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG MPI_CXX)
|
||||
|
||||
set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
|
||||
MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT GECKO GNUTLS NETCDF MPFR PUMI
|
||||
POSIXCLOCKS MFEMBacktrace ZLIB)
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
set(TPL_INCLUDE_DIRS "")
|
||||
@@ -477,15 +306,15 @@ include_directories(${TPL_INCLUDE_DIRS})
|
||||
if (OPENMP_FOUND)
|
||||
message(STATUS "MFEM: using package OpenMP")
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
|
||||
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
|
||||
# Windows specific
|
||||
set(_USE_MATH_DEFINES ${WIN32})
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Define and configure the MFEM library
|
||||
#-------------------------------------------------------------------------------
|
||||
@@ -497,13 +326,6 @@ set(MFEM_SOURCE_DIRS general linalg mesh fem)
|
||||
foreach(DIR IN LISTS MFEM_SOURCE_DIRS)
|
||||
add_subdirectory(${DIR})
|
||||
endforeach()
|
||||
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${SOURCES} PROPERTIES LANGUAGE CUDA)
|
||||
elseif(MFEM_USE_HIP)
|
||||
set_source_files_properties(${SOURCES} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
|
||||
endif()
|
||||
|
||||
add_subdirectory(config)
|
||||
set(MASTER_HEADERS
|
||||
${PROJECT_SOURCE_DIR}/mfem.hpp
|
||||
@@ -514,26 +336,25 @@ set(CMAKE_INSTALL_RPATH_USE_LINK_PATH ON CACHE BOOL "")
|
||||
set(CMAKE_INSTALL_RPATH "${_lib_path}" CACHE PATH "")
|
||||
set(CMAKE_INSTALL_NAME_DIR "${_lib_path}" CACHE PATH "")
|
||||
|
||||
set(MFEM_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR} CACHE PATH
|
||||
"The MFEM source directory" FORCE)
|
||||
set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX} CACHE PATH
|
||||
"The MFEM install directory" FORCE)
|
||||
|
||||
# Declaring the library
|
||||
mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
if (CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
else()
|
||||
target_link_libraries(mfem ${TPL_LIBRARIES})
|
||||
endif()
|
||||
if (MINGW)
|
||||
target_link_libraries(mfem PRIVATE ws2_32)
|
||||
target_link_libraries(mfem ws2_32)
|
||||
endif()
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
# If building out-of-source, define MFEM_CONFIG_FILE to point to the config file
|
||||
# inside the build directory.
|
||||
# If building out-of-source, define MFEM_BUILD_DIR to point to the build
|
||||
# directory.
|
||||
if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
target_compile_definitions(mfem PRIVATE
|
||||
"MFEM_CONFIG_FILE=\"${PROJECT_BINARY_DIR}/config/_config.hpp\"")
|
||||
"MFEM_BUILD_DIR=${PROJECT_BINARY_DIR}")
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
@@ -549,7 +370,7 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
"Writing substitute header --> \"${Header}\"")
|
||||
file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
|
||||
"// Auto-generated file.
|
||||
#define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
|
||||
#define MFEM_BUILD_DIR ${PROJECT_BINARY_DIR}
|
||||
#include \"${PROJECT_SOURCE_DIR}/${Header}\"
|
||||
")
|
||||
# This version will be installed in the top include directory:
|
||||
@@ -560,24 +381,13 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
set(MFEM_CUSTOM_TARGET_PREFIX CACHE STRING "")
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Examples, miniapps, benchmarks and testing
|
||||
# Examples, miniapps, and testing
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
# Enable testing and benchmarks if required
|
||||
# Enable testing if required
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
enable_testing()
|
||||
set(MFEM_ALL_TESTS_TARGET_NAME tests)
|
||||
add_mfem_target(${MFEM_ALL_TESTS_TARGET_NAME} OFF)
|
||||
add_subdirectory(tests EXCLUDE_FROM_ALL)
|
||||
|
||||
# Create a target for all benchmarks and, optionally, enable it.
|
||||
set(MFEM_ALL_BENCHMARKS_TARGET_NAME benchmarks)
|
||||
add_mfem_target(${MFEM_ALL_BENCHMARKS_TARGET_NAME}
|
||||
${MFEM_ENABLE_GOOGLE_BENCHMARKS})
|
||||
add_subdirectory(tests/benchmarks EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
|
||||
# Define a target that all examples and miniapps will depend on.
|
||||
@@ -587,11 +397,7 @@ add_custom_target(${MFEM_EXEC_PREREQUISITES_TARGET_NAME})
|
||||
# Create a target for all examples and, optionally, enable it.
|
||||
set(MFEM_ALL_EXAMPLES_TARGET_NAME examples)
|
||||
add_mfem_target(${MFEM_ALL_EXAMPLES_TARGET_NAME} ${MFEM_ENABLE_EXAMPLES})
|
||||
if (MFEM_ENABLE_EXAMPLES)
|
||||
add_subdirectory(examples) #install examples if enabled
|
||||
else()
|
||||
add_subdirectory(examples EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
add_subdirectory(examples EXCLUDE_FROM_ALL)
|
||||
|
||||
# Create a target for all miniapps and, optionally, enable it.
|
||||
set(MFEM_ALL_MINIAPPS_TARGET_NAME miniapps)
|
||||
@@ -601,10 +407,7 @@ add_subdirectory(miniapps EXCLUDE_FROM_ALL)
|
||||
# Target to build all executables, i.e. everything.
|
||||
add_custom_target(exec)
|
||||
add_dependencies(exec
|
||||
${MFEM_ALL_BENCHMARKS_TARGET_NAME}
|
||||
${MFEM_ALL_EXAMPLES_TARGET_NAME}
|
||||
${MFEM_ALL_MINIAPPS_TARGET_NAME}
|
||||
${MFEM_ALL_TESTS_TARGET_NAME})
|
||||
${MFEM_ALL_EXAMPLES_TARGET_NAME} ${MFEM_ALL_MINIAPPS_TARGET_NAME})
|
||||
# Here, we want to "add_dependencies(test exec)". However, dependencies for
|
||||
# 'test' (and other built-in targets) can not be added with add_dependencies():
|
||||
# - https://gitlab.kitware.com/cmake/cmake/issues/8438
|
||||
@@ -623,17 +426,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Add 'check' target - quick test
|
||||
set(MFEM_CHECK_TARGET_NAME ${MFEM_CUSTOM_TARGET_PREFIX}check)
|
||||
if (NOT MFEM_USE_MPI)
|
||||
add_custom_target(${MFEM_CHECK_TARGET_NAME}
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1_ser\" -C ${CMAKE_CFG_INTDIR}
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R '^ex1_ser' -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(${MFEM_CHECK_TARGET_NAME} ex1)
|
||||
add_dependencies(check ex1)
|
||||
else()
|
||||
add_custom_target(${MFEM_CHECK_TARGET_NAME}
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1p\" -C ${CMAKE_CFG_INTDIR}
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R '^ex1p' -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(${MFEM_CHECK_TARGET_NAME} ex1p)
|
||||
add_dependencies(check ex1p)
|
||||
endif()
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
@@ -676,20 +478,6 @@ install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "*.hpp")
|
||||
|
||||
# Install the okl files
|
||||
if (MFEM_USE_OCCA)
|
||||
install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "*.okl")
|
||||
endif()
|
||||
|
||||
# Install the libCEED files
|
||||
if (MFEM_USE_CEED)
|
||||
install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "fem/ceed/*.h")
|
||||
endif()
|
||||
|
||||
# Install ${HEADERS}
|
||||
# ---
|
||||
# foreach (HDR ${HEADERS})
|
||||
@@ -755,10 +543,3 @@ install(FILES
|
||||
# Install the export set for use with the install-tree
|
||||
install(EXPORT ${PROJECT_NAME_UC}Targets
|
||||
DESTINATION ${INSTALL_CMAKE_DIR})
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
|
||||
# define install rules for 'config.mk' and 'test.mk'
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
mfem_export_mk_files()
|
||||
|
||||
+125
-345
@@ -1,48 +1,39 @@
|
||||
<p align="center">
|
||||
<a href="https://mfem.org/"><img alt="mfem" src="https://mfem.org/img/logo-300.png"></a>
|
||||
<a href="http://mfem.org/"><img alt="mfem" src="http://mfem.org/img/logo-300.png"></a>
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/blob/master/COPYRIGHT"><img alt="License" src="https://img.shields.io/badge/License-LGPL--2.1-brightgreen.svg"></a>
|
||||
<a href="https://travis-ci.org/mfem/mfem"><img alt="Build Status" src="https://travis-ci.org/mfem/mfem.svg?branch=master"></a>
|
||||
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
|
||||
<a href="https://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
<a href="http://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
</p>
|
||||
|
||||
|
||||
# How to Contribute
|
||||
|
||||
The MFEM team welcomes contributions at all levels: bugfixes; code improvements;
|
||||
simplifications; new mesh, discretization or solver capabilities; improved
|
||||
documentation; new examples and miniapps; HPC performance improvements; etc.
|
||||
The MFEM team welcomes contributions at all levels: bugfixes; code
|
||||
improvements; simplifications; new mesh, discretization or solver
|
||||
capabilities; improved documentation; new examples and miniapps;
|
||||
HPC performance improvements; ...
|
||||
|
||||
MFEM is distributed under the terms of the BSD-3 license. All new contributions
|
||||
must be made under this license.
|
||||
|
||||
If you plan on contributing to MFEM, consider reviewing the
|
||||
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
|
||||
already exists for your desired feature or the bug you ran into. Use a pull
|
||||
request (PR) toward the `mfem:master` branch to propose your contribution. If
|
||||
you are planning significant code changes or have questions, you may want to
|
||||
open an [issue](https://github.com/mfem/mfem/issues) before issuing a PR. In
|
||||
addition to technical contributions, we are also interested in your results and
|
||||
[simulation images](https://mfem.org/gallery/), which you can share via a pull
|
||||
request in the [mfem/web](https://github.com/mfem/web) repo.
|
||||
Use a pull request (PR) toward the `mfem:master` branch to propose your
|
||||
contribution. If you are planning significant code changes, or have any
|
||||
questions, you can also open an [issue](https://github.com/mfem/mfem/issues)
|
||||
before issuing a PR. We also welcome your [simulation
|
||||
images](http://mfem.org/gallery/), which you can submit via a pull request in
|
||||
[mfem/web](https://github.com/mfem/web).
|
||||
|
||||
See the [Quick Summary](#quick-summary) section for the main highlights of our
|
||||
GitHub workflow. For more details, consult the following sections and refer
|
||||
back to them before issuing pull requests:
|
||||
|
||||
- [Quick Summary](#quick-summary)
|
||||
- [Code Overview](#code-overview)
|
||||
- [GitHub Workflow](#github-workflow)
|
||||
- [MFEM Organization](#mfem-organization)
|
||||
- [New Feature Development](#new-feature-development)
|
||||
- [Developer Guidelines](#developer-guidelines)
|
||||
- [Pull Requests](#pull-requests)
|
||||
- [MFEM PR Rules](#mfem-pr-rules)
|
||||
- [Pull Request Checklist](#pull-request-checklist)
|
||||
- [Master/Next Workflow](#masternext-workflow)
|
||||
- [Releases](#releases)
|
||||
@@ -54,7 +45,7 @@ back to them before issuing pull requests:
|
||||
Contributing to MFEM requires knowledge of Git and, likely, finite elements. If
|
||||
you are new to Git, see the [GitHub learning
|
||||
resources](https://help.github.com/articles/git-and-github-learning-resources/).
|
||||
To learn more about the finite element method, see our [FEM page](https://mfem.org/fem).
|
||||
To learn more about the finite element method, see our [FEM page](http://mfem.org/fem).
|
||||
|
||||
*By submitting a pull request, you are affirming the [Developer's Certificate of
|
||||
Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
@@ -66,18 +57,8 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
development branches off `mfem:master`.
|
||||
- Please follow the [developer guidelines](#developer-guidelines), in particular
|
||||
with regards to documentation and code styling.
|
||||
- Please do not commit large/binary files to the central repository (use a fork
|
||||
instead).
|
||||
- Pull requests should be issued toward `mfem:master`. Make sure
|
||||
to check the items off the [Pull Request Checklist](#pull-request-checklist) and
|
||||
follow the [MFEM PR Rules](#mfem-pr-rules).
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning two
|
||||
reviewers to evaluate the changes.
|
||||
- The reviewers have 3 weeks to evaluate the PR and work with the author to
|
||||
fix issues and implement improvements.
|
||||
- During review there should be no force pushes/rewriting history in the branch.
|
||||
- Pull requests should be issued toward `mfem:master`. Make sure
|
||||
to check the items off the [Pull Request Checklist](#pull-request-checklist).
|
||||
- After approval, MFEM developers merge the PR manually in the [mfem:next branch](#masternext-workflow).
|
||||
- After a week of testing in `mfem:next`, the original PR is merged in `mfem:master`.
|
||||
- We use [milestones](https://github.com/mfem/mfem/milestones) to coordinate the
|
||||
@@ -87,144 +68,98 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
|
||||
### Code Overview
|
||||
|
||||
#### Source code structure:
|
||||
- The MFEM library uses object-orient design principles which reflect, in code,
|
||||
the independent mathematical concepts of meshing, linear algebra and finite
|
||||
element spaces and operators.
|
||||
|
||||
The MFEM library uses object-oriented design principles which reflect, in code,
|
||||
the independent mathematical concepts of meshing, linear algebra and finite
|
||||
element spaces and operators.
|
||||
|
||||
The MFEM source code has the following structure:
|
||||
|
||||
```
|
||||
- The MFEM source code has the following structure:
|
||||
```
|
||||
.
|
||||
├── config
|
||||
│ ├── cmake
|
||||
│ └── githooks
|
||||
│ └── cmake
|
||||
│ └── modules
|
||||
├── data
|
||||
├── doc
|
||||
│ └── web
|
||||
│ └── examples
|
||||
├── examples
|
||||
│ ├── amgx
|
||||
│ ├── caliper
|
||||
│ ├── ginkgo
|
||||
│ ├── hiop
|
||||
│ ├── jupyter
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
| └── superlu
|
||||
│ └── sundials
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── qinterp
|
||||
│ └── tmop
|
||||
├── general
|
||||
├── linalg
|
||||
│ └── simd
|
||||
├── mesh
|
||||
├── miniapps
|
||||
│ ├── adjoint
|
||||
│ ├── autodiff
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
│ ├── navier
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
│ ├── performance
|
||||
│ ├── shifted
|
||||
│ ├── solvers
|
||||
│ ├── tools
|
||||
│ └── toys
|
||||
└── tests
|
||||
├── convergence
|
||||
├── gitlab
|
||||
├── mem_manager
|
||||
├── par-mesh-format
|
||||
├── scripts
|
||||
└── unit
|
||||
```
|
||||
└── miniapps
|
||||
├── common
|
||||
├── electromagnetics
|
||||
├── meshing
|
||||
├── nurbs
|
||||
├── performance
|
||||
└── tools
|
||||
```
|
||||
|
||||
#### Main directories and classes
|
||||
|
||||
The main directories are `fem/`, `mesh/` and `linalg/` containing the C++
|
||||
classes implementing the finite element, mesh and linear algebra concepts
|
||||
respectively.
|
||||
- The main directories are `fem/`, `mesh/` and `linalg/` containing the C++
|
||||
classes implementing the finite element, mesh and linear algebra concepts
|
||||
respectively.
|
||||
|
||||
- The main mesh classes are:
|
||||
+ [`Mesh`](https://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](https://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](https://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
|
||||
+ [`Mesh`](http://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](http://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](http://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
|
||||
|
||||
- The main finite element classes are:
|
||||
+ [`FiniteElement`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
|
||||
+ [`FiniteElement`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
|
||||
|
||||
- The main linear algebra classes and sources are
|
||||
+ [`Operator`](https://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](https://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`Operator`](http://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](http://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
|
||||
#### Parallel implementation
|
||||
|
||||
Parallel MPI objects in MFEM inherit their serial counterparts, so a parallel
|
||||
mesh for example is just a serial mesh on each task plus the information on
|
||||
shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
- Parallel MPI objects in MFEM inherit their serial counterparts, so a parallel
|
||||
mesh for example is just a serial mesh on each task plus the information on
|
||||
shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
|
||||
- The main parallel classes are
|
||||
+ [`ParMesh`](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://mfem.github.io/doxygen/html/hypre_8hpp.html)
|
||||
+ [`ParMesh`](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](http://mfem.github.io/doxygen/html/hypre_8hpp.html)
|
||||
|
||||
#### GPU and general device support
|
||||
|
||||
GPU and multi-core CPU support is based on device kernels supporting different
|
||||
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://mfem.github.io/doxygen/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
|
||||
+ the [`MFEM_FORALL`](https://mfem.github.io/doxygen/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](https://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](https://mfem.github.io/doxygen/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
- The `general/` directory contains C++ classes that serve as utilities for
|
||||
communication, error handling, arrays, (Boolean) tables, timing, etc.
|
||||
|
||||
- The `config/` directory contains build-related files, both for the plain
|
||||
Makefile and the CMake build options.
|
||||
|
||||
- The `doc/` directory contains configuration for the Doxygen code documentation
|
||||
that can either be built locally or browsed online at
|
||||
https://mfem.github.io/doxygen/html/index.html.
|
||||
that can either be build locally, or browsed online at
|
||||
http://mfem.github.io/doxygen/html/index.html.
|
||||
|
||||
#### Examples and tests
|
||||
- `examples` and `miniapps` respectively gather simple and more fully-featured
|
||||
demonstrations of the usage on MFEM. They both rely on `data/` for the
|
||||
collection of meshes.
|
||||
- The `tests/` directory contains a unit test suite and will later contain more
|
||||
tests that run example codes.
|
||||
- The `data/` directory contains a collection of small mesh files, that are used
|
||||
in the simple example codes and more fully-featured mini applications in the
|
||||
`examples/` and `miniapps/` directories.
|
||||
|
||||
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
|
||||
website.
|
||||
- See also the [code overview](http://mfem.org/code-overview/) section on the
|
||||
MFEM website.
|
||||
|
||||
## GitHub Workflow
|
||||
|
||||
The MFEM GitHub organization: https://github.com/mfem, is the main developer hub
|
||||
for the MFEM project.
|
||||
The GitHub organization, https://github.com/mfem, is the main developer hub for
|
||||
the MFEM project.
|
||||
|
||||
If you plan to make contributions or would like to stay up-to-date with changes
|
||||
If you plan to make contributions or will like to stay up-to-date with changes
|
||||
in the code, *we strongly encourage you to [join the MFEM organization](#mfem-organization)*.
|
||||
|
||||
This will simplify the workflow (by providing you additional permissions), and
|
||||
@@ -233,31 +168,34 @@ will allow us to reach you directly with project announcements.
|
||||
|
||||
### MFEM Organization
|
||||
|
||||
#### Getting started (GitHub)
|
||||
Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
+ Create the account at: [github.com/join](https://github.com/join).
|
||||
+ For easy identification, please add your full name and maybe a picture of you at:
|
||||
https://github.com/settings/profile.
|
||||
- Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
+ Create the account at: github.com/join.
|
||||
+ For easy identification, please add your name and maybe a picture of you at: https://github.com/settings/profile.
|
||||
+ To receive notification, set a primary email at: https://github.com/settings/emails.
|
||||
+ For password-less pull/push over SSH, add your SSH keys at: https://github.com/settings/keys.
|
||||
|
||||
#### Joining
|
||||
- [Contact us](#contact-information) for an invitation to join the MFEM GitHub
|
||||
organization. You will receive an invitation email, which you can directly accept.
|
||||
organization.
|
||||
|
||||
- You should receive an invitation email, which you can directly accept.
|
||||
Alternatively, *after logging into GitHub*, you can accept the invitation at
|
||||
the top of https://github.com/mfem.
|
||||
|
||||
- Consider making your membership public by going to https://github.com/orgs/mfem/people
|
||||
and clicking on the organization visibility drop box next to your name.
|
||||
and clicking on the organization visibility dropbox next to your name.
|
||||
|
||||
- Project discussions and announcements will be posted at
|
||||
https://github.com/orgs/mfem/teams/everyone.
|
||||
|
||||
#### Structure
|
||||
- The MFEM source code is in the [mfem](https://github.com/mfem/mfem)
|
||||
repository.
|
||||
|
||||
- The website and corresponding documentation are in the
|
||||
[web](https://github.com/mfem/web) repository.
|
||||
|
||||
- The [PyMFEM](https://github.com/mfem/PyMFEM) repository contains a Python
|
||||
wrapper for MFEM.
|
||||
|
||||
- The [data](https://github.com/mfem/data) repository contains additional
|
||||
(large) datafiles for MFEM.
|
||||
|
||||
@@ -265,9 +203,9 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
### New Feature Development
|
||||
|
||||
- A new feature should be important enough that at least one person, the
|
||||
author, is willing to work on it and be its champion.
|
||||
proposer, is willing to work on it and be its champion.
|
||||
|
||||
- The author creates a branch for the new feature (with suffix `-dev`), off
|
||||
- The proposer creates a branch for the new feature (with suffix `-dev`), off
|
||||
the `master` branch, or another existing feature branch, for example:
|
||||
|
||||
```
|
||||
@@ -310,13 +248,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- Lean code base is easier to understand by new collaborators.
|
||||
- New features should be added only if they are necessary or generally useful.
|
||||
- Introduction of language constructions not currently used in MFEM should be
|
||||
justified and generally avoided (to maintain portability to various systems
|
||||
and compilers, including early access hardware).
|
||||
justified and generally avoided (so we can build on cutting-edge systems).
|
||||
- We prefer basic C++ and the C++03 standard, to keep the code readable by
|
||||
a large audience and to make sure it compiles anywhere.
|
||||
|
||||
- *Keep the code general and reasonably efficient*
|
||||
- The main goal is fast prototyping for research and application development.
|
||||
- Main goal is fast prototyping for research.
|
||||
- When in doubt, generality wins over efficiency.
|
||||
- Respect the needs of different users (current and/or future).
|
||||
|
||||
@@ -329,22 +266,15 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
change the code by default.
|
||||
|
||||
- Code specifics
|
||||
- All new public, protected, and private classes, methods, data members, and
|
||||
functions have Doxygen-style documentation in source comments.
|
||||
- In addition to arguments and functionality, documentation should include the
|
||||
current limitations of the code, any background information that is
|
||||
implicitly assumed in the implementation, and the ownership and lifetime
|
||||
of data.
|
||||
- All significant new classes, methods and functions have Doxygen-style
|
||||
documentation in source comments.
|
||||
- Consistent code styling is enforced with `make style` in the top-level
|
||||
directory. This requires [Artistic Style](http://astyle.sourceforge.net) (we
|
||||
specifically use version 3.1). See also the file `config/mfem.astylerc`.
|
||||
specifically use version 2.05.1). See also the file `config/mfem.astylerc`.
|
||||
- Use `mfem::out` and `mfem::err` instead of `std::cout` and `std::cerr` in
|
||||
internal library code. (You can use `std` in examples and miniapps.)
|
||||
- When manually resolving conflicts during a merge, make sure to mention the
|
||||
conflicted files in the commit message.
|
||||
- All significant new features and changes should be documented in CHANGELOG.
|
||||
- New examples and miniapps should have documentation on the MFEM webpage.
|
||||
|
||||
|
||||
### Pull Requests
|
||||
|
||||
@@ -366,125 +296,14 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
|
||||
`[DISCUSS] Hybridized DG [hdg-dev]`
|
||||
|
||||
- If the PR is still a work in progress, add the `WIP` label to it and
|
||||
optionally the `[WIP]` prefix in the title.
|
||||
|
||||
- Add a description, appropriate labels and assign yourself to the PR. The MFEM
|
||||
team will add reviewers as appropriate.
|
||||
|
||||
- List outstanding TODO items in the description, see PR #222 for an example.
|
||||
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning
|
||||
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
|
||||
the PR and work with the author to implement improvements and fix issues.
|
||||
|
||||
- Once the `ready-for-review` label has been applied and reviewers have been
|
||||
assigned, the PR is considered under review. To help with the review process
|
||||
there should be no force pushes/rewriting history in the branch.
|
||||
|
||||
- After approval, the PR is [tested](#masternext-workflow) for a week with
|
||||
other approved PRs in the `mfem:next` branch.
|
||||
|
||||
- Consider manually running the tests in `tests/scripts` before merging in
|
||||
`mfem:next`, see the [README](tests/scripts/README) file in that directory
|
||||
for more details.
|
||||
|
||||
- Track the GitHub Actions and Appveyor [continuous integration](#automated-testing)
|
||||
builds at the end of the PR. These should generally run clean, so address any
|
||||
errors as soon as possible. Please ask if you are unsure how to do that.
|
||||
|
||||
- Note that some tests, such as the `branch-history` check in GitHub Actions
|
||||
are safeguards that are allowed to fail in certain cases.
|
||||
|
||||
- Other tests, such as the `code-style`, `documentation` and `gitignore`
|
||||
checks in GitHub Actions enforce MFEM-specific rules which are explained in
|
||||
the error messages and the `tests/scripts` directory.
|
||||
|
||||
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
|
||||
Actions can be triggered automatically before each push using git hooks. See
|
||||
the [git hooks README](config/githooks/README.md) for a detailed explanation.
|
||||
|
||||
- If triggered, track the status of the LLNL GitLab tests. If failing, ask
|
||||
one of the _LLNL developers_ for details.
|
||||
|
||||
|
||||
### MFEM PR Rules
|
||||
|
||||
The Pull Request (PR) approval process in MFEM is similar to the approval of papers in a peer-reviewed journal. In particular:
|
||||
|
||||
1. There is an MFEM board of "editors" that evaluates new PRs and assigns "reviewers" for each PR.
|
||||
|
||||
2. The assigned reviewers are responsible to carefully review and test the proposed PR.
|
||||
|
||||
3. A PR can be (manually) merged in the *next* branch only if 2 of the assigned reviewers have approved it and it has passed internal testing. This merge can be performed by any of the assigned reviewers or by any of the editors.
|
||||
|
||||
4. A PR can be merged in the *master* branch only if it has been tested successfully for a week in *next* and an editor has (optionally) taken a final look. This merge can be performed only by one of the editors.
|
||||
|
||||
#### Responsibilities of Editors
|
||||
|
||||
The current list of MFEM editors is:
|
||||
|
||||
- @v-dobrev (Veselin Dobrev)
|
||||
- @tzanio (Tzanio Kolev)
|
||||
- @pazner (Will Pazner)
|
||||
- @mlstowell (Mark Stowell)
|
||||
|
||||
**The responsibilities of the editors are:**
|
||||
|
||||
1. To assign appropriate milestone and labels for new PRs, e.g. *bugfix*, *minor*, *api-change*, *high-impact*, etc.
|
||||
|
||||
2. To assign at least 2 reviewers for new PRs. An editor can also be a reviewer. The editor, reviewers, and author should be listed as "Assignees" on the GitHub PR page. After assignment, the `in-review` label should be added.
|
||||
|
||||
3. To complete the initial PR evaluation and assignments in a timely manner: 1 week from submission.
|
||||
|
||||
4. To assist reviewers when they need help with their reviews (but also to stay out of the way when they don't).
|
||||
|
||||
5. To remind the reviewers about timely completion of their review.
|
||||
|
||||
6. To take a final look and complete the PR merge in *master*. The final look step is optional and shouldn't take more than 3 days.
|
||||
|
||||
7. The assignment of bugfixes should be expedited proportional to their importance, e.g. in some cases the editor can assign much shorter review window.
|
||||
|
||||
#### Responsibilities of Reviewers
|
||||
|
||||
Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their area of expertise.
|
||||
|
||||
**The responsibilities of the reviewers are:**
|
||||
|
||||
1. To let the editors know if the proposed assignment is not a good match for them.
|
||||
|
||||
2. To communicate with the PR author, provide feedback and work with them to resolve issues.
|
||||
|
||||
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
|
||||
|
||||
3. To seek help from the editors in case of difficulties.
|
||||
|
||||
4. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
|
||||
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
|
||||
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
|
||||
#### Responsibilities of Authors
|
||||
|
||||
Authors should clearly indicate when a PR is ready for review (before that the PR should be marked as `Draft` or `[WIP]`).
|
||||
|
||||
**The responsibilities of the authors are:**
|
||||
|
||||
1. To follow the instructions and PR checklist in the `CONTRIBUTING.md` document in the MFEM repository.
|
||||
|
||||
2. To respond to reviewer feedback in a timely manner.
|
||||
|
||||
3. Authors are encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
4. Authors can use the "Reviewers" section of the GitHub PR page to suggest reviewers, but the "Assignees" section will show who the editor has assigned to do the reviews.
|
||||
|
||||
5. To indicate when the PR is ready for review by adding the `ready-for-review` label.
|
||||
- Track the Travis CI and Appveyor [continuous integration](#automated-testing)
|
||||
builds at the end of the PR. These should run clean, so address any errors as
|
||||
soon as possible.
|
||||
|
||||
|
||||
### Pull Request Checklist
|
||||
@@ -497,18 +316,14 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Update `INSTALL`:
|
||||
- [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
|
||||
- [ ] Have the version ranges for any required or optional libraries changed?
|
||||
- [ ] Has a new optional library been added? (*Make sure the external library is licensed under LGPL, not GPL!*)
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*.
|
||||
- [ ] Update `.gitignore`:
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
- [ ] Check if `make distclean; git status` shows any files that are generated from the source but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
- [ ] New examples:
|
||||
- [ ] All sample runs at the top of the example source file work.
|
||||
- [ ] All sample runs at the top of the example work.
|
||||
- [ ] Update `examples/makefile`:
|
||||
- [ ] Add the example code to the appropriate `SEQ_EXAMPLES` and `PAR_EXAMPLES` variables.
|
||||
- [ ] Add any files generated by it to the `clean` target.
|
||||
@@ -517,14 +332,13 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add the example code to the `ALL_EXE_SRCS` variable.
|
||||
- [ ] Make sure `THIS_TEST_OPTIONS` is set correctly for the new example.
|
||||
- [ ] List the new example in `doc/CodeDocumentation.dox`.
|
||||
- [ ] If new examples directory (e.g.`examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add example-specific documentation, see e.g. the `src/examples.md`.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] In `examples.md`, list the example under the appropriate categories, add new categories if necessary.
|
||||
- [ ] Add a short description of the example in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New miniapps:
|
||||
- [ ] All sample runs at the top of the miniapp source file work.
|
||||
- [ ] All sample runs at the top of the miniapp work.
|
||||
- [ ] Update top-level `makefile` and `makefile` in corresponding miniapp directory.
|
||||
- [ ] Add the miniapp binary and any files generated by it to the top-level `.gitignore` file.
|
||||
- [ ] Update CMake build system:
|
||||
@@ -532,27 +346,27 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
|
||||
- [ ] Consider adding a new test for the new miniapp.
|
||||
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New capability:
|
||||
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
|
||||
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
|
||||
- [ ] Any new functions should include descriptions of their intended use e.g. for internal use only, user-facing, etc., along with references to example code whenever possible/appropriate.
|
||||
- [ ] All significant new classes, methods and functions have Doxygen-style documentation in source comments.
|
||||
- [ ] Consider adding new sample runs in existing examples to highlight the new capability.
|
||||
- [ ] Consider saving cool simulation pictures with the new capability in the Confluence gallery (LLNL only) or submitting them, via pull request, to the gallery section of the `mfem/web` repo.
|
||||
- [ ] If this is a major new feature, consider mentioning it in the short summary inside `README` *(rare)*.
|
||||
- [ ] If this is a major new feature, consider mentioning in the short summary inside `README` *(rare)*.
|
||||
- [ ] List major new classes in `doc/CodeDocumentation.dox` *(rare)*.
|
||||
- [ ] Update this checklist, if the new pull request affects it.
|
||||
- [ ] Run `make unittest` to make sure all unit tests pass.
|
||||
- [ ] Run the tests in `tests/scripts`.
|
||||
- [ ] (LLNL only) Clone the `tests` repository and run the following tests, see `mfem/tests/README.md`:
|
||||
- [ ] `compilers`
|
||||
- [ ] `memcheck`
|
||||
- [ ] `unit-test`
|
||||
- [ ] `documentation`
|
||||
- [ ] (LLNL only) After merging:
|
||||
- [ ] Update internal tests to include the new features.
|
||||
|
||||
- [ ] Regenerate `README.html` files from companion documentation pull requests.
|
||||
- [ ] Update the `baseline` and `compiler` tests, add new tests if necessary.
|
||||
- [ ] Consider updating the script `mfem/tests/sample-runs` (`sample-runs-serial` and `sample-runs-parallel`).
|
||||
|
||||
### Master/Next Workflow
|
||||
|
||||
@@ -611,7 +425,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
(replace `3.3.2` with current release):
|
||||
- Rename the current `next` branch to `next-pre-v3.3.2`.
|
||||
- Create a new `next` branch starting from the `v3.3.2` release.
|
||||
- Local copies of `next` can then be updated with `git fetch origin next && git checkout -B next origin/next`.
|
||||
- Local copies of `next` can then be updated with `git checkout -B next origin/next`.
|
||||
|
||||
### Release Checklist
|
||||
|
||||
@@ -620,14 +434,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] `makefile`
|
||||
- [ ] `CMakeLists.txt`
|
||||
- [ ] `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Check that version requirements for each of MFEM's dependencies are documented in `INSTALL` and up-to-date
|
||||
- [ ] Check that continuous integration server configurations reflect the dependency version requirements of the new release
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update the `CHANGELOG` to organize all release contributions
|
||||
- [ ] Review the whole source code once over
|
||||
- [ ] Ask MFEM-based applications to test the pre-release branch
|
||||
- [ ] Test on additional platforms and compilers
|
||||
- [ ] (LLNL only) Make sure all `README.html` files in the source repo are up to date.
|
||||
- [ ] Tag the repository:
|
||||
|
||||
```
|
||||
@@ -637,9 +444,9 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] Create the release tarball and push to `mfem/releases`.
|
||||
- [ ] Recreate the `next` branch as described in previous section.
|
||||
- [ ] Update and push documentation to `mfem/doxygen`.
|
||||
- [ ] Update URL shortlinks:
|
||||
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Update URL shorlinks:
|
||||
- [ ] Create a shortlink at [https://goo.gl/](https://goo.gl/) for the release tarball, e.g. http://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shorlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
|
||||
- [ ] Update website in `mfem/web` repo:
|
||||
- Update version and shortlinks in `src/index.md` and `src/download.md`.
|
||||
@@ -648,9 +455,6 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
|
||||
## LLNL Workflow
|
||||
|
||||
|
||||
### Mirroring on Bitbucket
|
||||
|
||||
- The GitHub `master` and `next` branches are mirrored to the LLNL institutional
|
||||
Bitbucket repository as `gh-master` and `gh-next`.
|
||||
|
||||
@@ -669,41 +473,22 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
your own risk.
|
||||
|
||||
|
||||
### Mirroring on GitLab
|
||||
|
||||
- MFEM repository is also mirrored on the LLNL GitLab instance, in a
|
||||
semi-automated manner.
|
||||
|
||||
- This instance is meant to complete CI testing with tests on Livermore
|
||||
Computing systems. GitLab pipeline status is reported in the corresponding
|
||||
GitHub pull request.
|
||||
|
||||
- In GitLab pipelines, TPLs (dependencies) are built using Spack, driven by Uberenv.
|
||||
|
||||
- No change to the MFEM repo can be made on this instance.
|
||||
|
||||
## Automated Testing
|
||||
|
||||
MFEM has several levels of automated testing running on GitHub, as well as on
|
||||
local Mac and Linux workstations, and Livermore Computing clusters at LLNL.
|
||||
|
||||
In addition, developers can set local git hooks to run some quick checks on
|
||||
commit or push, see the [README](config/githooks/README.md) in the `config/githooks`
|
||||
directory.
|
||||
|
||||
|
||||
### Linux and Mac smoke tests
|
||||
We use GitHub Actions to drive the default tests on the `master` and `next`
|
||||
branches. See the `.github/workflows` files and the logs at
|
||||
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
|
||||
We use Travis CI to drive the default tests on the `master` and `next`
|
||||
branches. See the `.travis` file and the logs at
|
||||
[https://travis-ci.org/mfem/mfem](https://travis-ci.org/mfem/mfem).
|
||||
|
||||
Testing using GitHub Actions should be kept lightweight, as there is a time
|
||||
Testing using Travis CI should be kept lightweight, as there is a 50 minute time
|
||||
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
|
||||
|
||||
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
|
||||
- Tests on the `next` branch are currently scheduled to run each night.
|
||||
|
||||
|
||||
### Windows smoke test
|
||||
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor` file and the
|
||||
@@ -713,17 +498,12 @@ build logs at
|
||||
CMake is used to generate the MSVC Project files and drive the build. A release
|
||||
and debug build is performed with a simple run of `ex1` to verify the executable.
|
||||
|
||||
|
||||
### Tests at LLNL
|
||||
At LLNL, we mirror the `master` and `next` branches internally (to `gh-master`
|
||||
and `gh-next`) and run longer nightly tests via cron. On the weekends, a more
|
||||
extensive test is run which extracts and executes all the different sample runs
|
||||
from each example.
|
||||
|
||||
- We mirror the `master` and `next` branches internally (to `gh-master` and
|
||||
`gh-next`) and run longer nightly tests via cron. On the weekends, a more
|
||||
extensive test is run which extracts and executes all the different sample
|
||||
runs from each example.
|
||||
|
||||
- We also mirror PRs on the LLNL GitLab instance. PR mirroring can only be
|
||||
triggered by _LLNL developers_, but test status is publicly available. Only
|
||||
_LLNL developers_ can access the detailed test report.
|
||||
|
||||
## Contact Information
|
||||
|
||||
|
||||
@@ -0,0 +1,64 @@
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
COPYRIGHT
|
||||
|
||||
The following copyright applies to each file in the MFEM distribution, unless
|
||||
otherwise stated in the file:
|
||||
|
||||
Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344 with
|
||||
the DOE.
|
||||
|
||||
Neither the United States Government nor Lawrence Livermore National Security,
|
||||
LLC nor any of their employees, makes any warranty, express or implied, or
|
||||
assumes any liability or responsibility for the accuracy, completeness, or
|
||||
usefulness of any information, apparatus, product, or process disclosed, or
|
||||
represents that its use would not infringe privately-owned rights.
|
||||
|
||||
Also, reference herein to any specific commercial products, process, or services
|
||||
by trade name, trademark, manufacturer or otherwise does not necessarily
|
||||
constitute or imply its endorsement, recommendation, or favoring by the United
|
||||
States Government or Lawrence Livermore National Security, LLC. The views and
|
||||
opinions of authors expressed herein do not necessarily state or reflect those
|
||||
of the United States Government or Lawrence Livermore National Security, LLC,
|
||||
and shall not be used for advertising or product endorsement purposes.
|
||||
|
||||
|
||||
LICENSE
|
||||
|
||||
MFEM is free software; you can redistribute it and/or modify it under the terms
|
||||
of the GNU Lesser General Public License (as published by the Free Software
|
||||
Foundation) version 2.1 dated February 1999, with the following EXCEPTIONS:
|
||||
|
||||
1. Subclasses of MFEM classes do not constitute a derivative work.
|
||||
|
||||
2. Static linking of applications to the MFEM library does not constitute a
|
||||
derivative work and does not require the author to provide source code for
|
||||
the application, use the shared MFEM library, or link their applications
|
||||
against a user-supplied version of MFEM.
|
||||
|
||||
MFEM is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||
WARRANTY; without even the IMPLIED WARRANTY OF MERCHANTABILITY or FITNESS FOR A
|
||||
PARTICULAR PURPOSE. See the terms and conditions of the GNU Lesser General
|
||||
Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public License along
|
||||
with this library (file LICENSE); if not, write to the Free Software Foundation,
|
||||
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
|
||||
|
||||
|
||||
CONTACT INFORMATION
|
||||
|
||||
The software is released under LLNL-CODE-443211. Please see
|
||||
|
||||
http://mfem.org
|
||||
|
||||
for more information and source code availability.
|
||||
@@ -5,7 +5,7 @@
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
http://mfem.org
|
||||
|
||||
The MFEM library has a serial and an MPI-based parallel version, which largely
|
||||
share the same code base. The only prerequisite for building the serial version
|
||||
@@ -13,42 +13,14 @@ of MFEM is a (modern) C++ compiler, such as g++. The parallel version of MFEM
|
||||
requires an MPI C++ compiler, as well as the following external libraries:
|
||||
|
||||
- hypre (a library of high-performance preconditioners)
|
||||
https://github.com/hypre-space/hypre
|
||||
http://www.llnl.gov/CASC/hypre
|
||||
|
||||
- METIS (a family of multilevel partitioning algorithms)
|
||||
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
|
||||
The hypre dependency can be downloaded as a tarball from GitHub or from the
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.20.0 release
|
||||
of hypre is available at
|
||||
|
||||
https://github.com/hypre-space/hypre/archive/v2.20.0.tar.gz
|
||||
|
||||
The METIS dependency can be disabled but that is not generally recommended, see
|
||||
the option MFEM_USE_METIS.
|
||||
|
||||
MFEM also includes support for devices such as GPUs, and programming models such
|
||||
as CUDA, HIP, OCCA, OpenMP and RAJA.
|
||||
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler. We recommend using
|
||||
a newer compiler, e.g. GCC version 4.9 or higher.
|
||||
|
||||
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- HIP support requires an AMD GPU and an installation of the ROCm software stack
|
||||
https://rocm.github.io/ROCmInstall.html#installing-from-amd-rocm-repositories
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
|
||||
- OpenMP support requires a compiler implementing the OpenMP API
|
||||
https://www.openmp.org
|
||||
|
||||
- RAJA support requires installation of the RAJA performance portability layer
|
||||
with (optionally) support for CUDA and OpenMP
|
||||
https://github.com/LLNL/RAJA
|
||||
|
||||
The library supports two build systems: one based on GNU make, and a second one
|
||||
based on CMake. Both build systems are described below. Some hints for building
|
||||
without GNU make or CMake can be found at the end of this file.
|
||||
@@ -58,12 +30,11 @@ following package managers:
|
||||
|
||||
- Spack, https://github.com/spack/spack
|
||||
- OpenHPC, http://openhpc.community
|
||||
- Conda-forge, https://conda-forge.org (pre-built binaries linked with OpenMPI/MPICH, hypre, and METIS)
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science
|
||||
|
||||
We also recommend downloading and building the MFEM-based GLVis visualization
|
||||
tool which can be used to visualize the meshes and solution in MFEM's examples
|
||||
and miniapps. See https://glvis.org and https://mfem.org/building.
|
||||
and miniapps. See http://glvis.org and http://mfem.org/building.
|
||||
|
||||
Quick start with GNU make
|
||||
=========================
|
||||
@@ -71,19 +42,11 @@ Serial build:
|
||||
make serial -j 4
|
||||
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(download hypre 2.10.0b and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
(build hypre 2.10.0b in ../hypre-2.10.0b relative to mfem/)
|
||||
make parallel -j 4
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_30')
|
||||
|
||||
HIP build:
|
||||
make hip -j 4
|
||||
(build for a specific AMD GPU chip: 'make hip -j 4 HIP_ARCH=gfx900')
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
cd examples
|
||||
make -j 4
|
||||
@@ -94,6 +57,7 @@ Build everything (library, examples and miniapps) with current configuration:
|
||||
Quick-check the build by running Example 1/1p (optional):
|
||||
make check
|
||||
|
||||
|
||||
Quick start with CMake
|
||||
======================
|
||||
Serial build:
|
||||
@@ -102,19 +66,13 @@ Serial build:
|
||||
make -j 4 (assuming "UNIX Makefiles" generator)
|
||||
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(download hypre 2.10.0b and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
(build hypre 2.10.0b in ../hypre-2.10.0b relative to mfem/)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
|
||||
make -j 4
|
||||
|
||||
CUDA build:
|
||||
(this build requires CMake 3.8 or newer)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_CUDA=YES
|
||||
make -j 4
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
make examples -j 4
|
||||
|
||||
@@ -170,18 +128,10 @@ Note that re-configuration is only needed to change the currently configured
|
||||
options. Several shortcut targets combining (re-)configuration and compilation
|
||||
are also defined:
|
||||
|
||||
make serial -> Builds serial optimized version of the library
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
make cuda -> Builds serial cuda optimized version of the library
|
||||
make pcuda -> Builds parallel cuda optimized version of the library
|
||||
make cudebug -> Builds serial cuda debug version of the library
|
||||
make pcudebug -> Builds parallel cuda debug version of the library
|
||||
make hip -> Builds serial hip optimized version of the library
|
||||
make phip -> Builds parallel hip optimized version of the library
|
||||
make hipdebug -> Builds serial hip debug version of the library
|
||||
make phipdebug -> Builds parallel hip debug version of the library
|
||||
make serial -> Builds serial optimized version of the library
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
|
||||
Note that any of the above shortcuts accept configuration options, either at the
|
||||
command line or through a user configuration file.
|
||||
@@ -243,9 +193,8 @@ Configuration options (GNU make)
|
||||
See the configuration file config/defaults.mk for the default settings.
|
||||
|
||||
Compilers:
|
||||
CXX - C++ compiler, serial build
|
||||
MPICXX - MPI C++ compiler, parallel build
|
||||
CUDA_CXX - The CUDA compiler, 'nvcc'
|
||||
CXX - C++ compiler, serial build
|
||||
MPICXX - MPI C++ compiler, parallel build
|
||||
|
||||
Compiler options:
|
||||
OPTIM_FLAGS - Options for optimized build
|
||||
@@ -281,7 +230,7 @@ MFEM_DEBUG = YES/NO
|
||||
and consistency checks that may simplify bug-hunting.
|
||||
|
||||
MFEM_USE_EXCEPTIONS = YES/NO
|
||||
Enable the use of exceptions. In particular, modifies the default behavior
|
||||
Enable the use of exceptions. In particular, modifies the default bahavior
|
||||
when errors are encountered: throw an exception, instead of aborting.
|
||||
|
||||
MFEM_USE_LIBUNWIND = YES/NO
|
||||
@@ -301,12 +250,8 @@ MFEM_THREAD_SAFE = YES/NO
|
||||
Use thread-safe implementation for some classes/methods. This comes at the
|
||||
cost of extra memory allocation and de-allocation.
|
||||
|
||||
MFEM_USE_LEGACY_OPENMP = YES/NO
|
||||
Enable (basic) experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
This option is deprecated.
|
||||
|
||||
MFEM_USE_OPENMP = YES/NO
|
||||
Enable the OpenMP backend.
|
||||
Enable (basic) experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
|
||||
MFEM_USE_MEMALLOC = YES/NO
|
||||
Internal MFEM option: enable batch allocation for some small objects.
|
||||
@@ -345,32 +290,12 @@ MFEM_USE_SUPERLU = YES/NO
|
||||
SuperLURowLocMatrix a distributed CSR matrix class needed by SuperLU. When
|
||||
enabled, this option uses the SUPERLU_* library options, see below.
|
||||
|
||||
MFEM_USE_SUPERLU5 = YES/NO
|
||||
If SuperLU functionality is enabled, use the older 5.1.0 version rather than
|
||||
the more recent 6+ versions.
|
||||
|
||||
MFEM_USE_MUMPS = YES/NO
|
||||
Enable MFEM functionality based on the MUMPS library. Currently, this
|
||||
option adds the class MUMPSSolver (a parallel sparse direct solver).
|
||||
When enabled, this option uses the MUMPS_* library options, see below.
|
||||
|
||||
MFEM_USE_STRUMPACK = YES/NO
|
||||
Enable MFEM functionality based on the STRUMPACK sparse direct solver and
|
||||
preconditioner through the STRUMPACKSolver and STRUMPACKRowLocMatrix
|
||||
classes. When enabled, this option uses the STRUMPACK_* library options, see
|
||||
below.
|
||||
|
||||
MFEM_USE_GINKGO = YES/NO
|
||||
Enable MFEM functionality based on the Ginkgo library, which provides
|
||||
iterative linear solvers and preconditioners with OpenMP, CUDA backends, see
|
||||
https://github.com/ginkgo-project/ginkgo. When enabled, the user can use
|
||||
Ginkgo's solvers and preconditioners as shown in examples/ginkgo/.
|
||||
|
||||
MFEM_USE_AMGX = YES/NO
|
||||
Enable MFEM functionality based on the AmgX multigrid library from NVIDIA.
|
||||
Allows the user to use SparseMatrices and HypreParMatrices to solve linear
|
||||
systems with the routines from the AmgX library.
|
||||
|
||||
MFEM_USE_GNUTLS = YES/NO
|
||||
Enable secure socket support in class socketstream, using the auxiliary
|
||||
GnuTLS_* classes, based on the GnuTLS library. This option may be useful in
|
||||
@@ -398,10 +323,6 @@ MFEM_USE_PETSC = YES/NO
|
||||
and other features based on the PETSc package. When enabled, this option uses
|
||||
the PETSC_* library options, see below.
|
||||
|
||||
MFEM_USE_SLEPC = YES/NO
|
||||
Enable MFEM eigensolvers based on the SLEPc package. When enabled, this
|
||||
option uses the SLEPC_* library options, see below.
|
||||
|
||||
MFEM_USE_MPFR = YES/NO
|
||||
MPFR is a library for multiple-precision floating-point computations. This
|
||||
option enables the use of MPFR in MFEM, e.g. for precise computation of 1D
|
||||
@@ -409,17 +330,11 @@ MFEM_USE_MPFR = YES/NO
|
||||
see below.
|
||||
|
||||
MFEM_USE_SIDRE = YES/NO
|
||||
Sidre is a component of LLNL's axom project, https://github.com/LLNL/axom,
|
||||
that provides an HDF5-based file format for visualization or restart
|
||||
capability following the Conduit (https://github.com/LLNL/conduit) mesh
|
||||
blueprint specification. When enabled, this option requires installation of
|
||||
HDF5 (see also MFEM_USE_NETCDF), Conduit and LLNL's axom project.
|
||||
|
||||
MFEM_USE_SIMD = YES/NO
|
||||
Enables the high performance templated classes to use architecture dependent
|
||||
SIMD intrinsics instead of the generic implementation of class AutoSIMD in
|
||||
linalg/simd/auto.hpp. This option should be combined with suitable
|
||||
compiler options, such as -march=native, to enable optimal vectorization.
|
||||
Sidre is a component of LLNL's axom project, http://goo.gl/cZyJdn, that
|
||||
provides an HDF5-based file format for visualization or restart capability
|
||||
following the Conduit (https://github.com/LLNL/conduit) mesh blueprint
|
||||
specification. When enabled, this option requires installation of HDF5 (see
|
||||
also MFEM_USE_NETCDF), Conduit and LLNL's axom project.
|
||||
|
||||
MFEM_USE_CONDUIT = YES/NO
|
||||
Enables support for converting MFEM Mesh and Grid Function objects to and
|
||||
@@ -428,15 +343,10 @@ MFEM_USE_CONDUIT = YES/NO
|
||||
an installation of Conduit. If Conduit was built with HDF5 support, it also
|
||||
requires an installation of HDF5 (see also MFEM_USE_NETCDF).
|
||||
|
||||
MFEM_USE_ADIOS2 = YES/NO
|
||||
Enables support for ADIOS2, version 2 of the adaptable input output system
|
||||
for scientific data management. In MFEM, ADIOS2 provides parallel I/O with
|
||||
ParaView visualization.
|
||||
|
||||
MFEM_USE_ZLIB = YES/NO
|
||||
MFEM_USE_GZSTREAM = YES/NO
|
||||
Enables use of on-the-fly gzip compressed streams. With this feature enabled
|
||||
(YES), MFEM can compress its output files on-the-fly. In addition, it can
|
||||
read back files compressed with zlib (or any compression utility capable
|
||||
read back files compressed with gzstream (or any compression utility capable
|
||||
of creating a gzip-compatible output such as gzip).
|
||||
MFEM will write compressed files if the mode argument in the constructor
|
||||
includes a 'z' character. With this feature disabled (NO), MFEM will not be
|
||||
@@ -451,94 +361,6 @@ MFEM_USE_PUMI = YES/NO
|
||||
data management system that is capable of handling general non-manifold
|
||||
models and effectively supports automated adaptive analysis. PUMI enables
|
||||
support for parallel unstructured mesh modifications in MFEM.
|
||||
The develop branch of PUMI repository (https://github.com/SCOREC/core)
|
||||
should be used for most updated features.
|
||||
|
||||
MFEM_USE_UMPIRE = YES/NO
|
||||
Enables support for Umpire, a resource management library that allows the
|
||||
discovery, provision, and management of memory on machines with multiple
|
||||
memory devices like NUMA and GPUs.
|
||||
|
||||
MFEM_USE_BENCHMARK = YES/NO
|
||||
Enables support for Google Benchmark, a library to support the benchmarking
|
||||
of functions, in the tests/benchmarks directory.
|
||||
|
||||
MFEM_USE_HIOP = YES/NO
|
||||
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
|
||||
HPC solver for nonlinear optimization problems.
|
||||
|
||||
MFEM_USE_CODIPACK = YES/NO
|
||||
Enable automatic differentiation using the CoDiPack library.
|
||||
www.scicomp.uni-kl.de/codi/
|
||||
|
||||
MFEM_USE_ADFORWARD = YES/NO
|
||||
Enable forward mode for AD packages. This option is valid
|
||||
only if the AD package supports two modes (backward/forward).
|
||||
|
||||
MFEM_USE_CUDA = YES/NO
|
||||
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
|
||||
platform and programming model for general computing on graphical processing
|
||||
units (GPUs). The variable CUDA_ARCH is used to specify the CUDA compute
|
||||
capability used during compilation (by default, CUDA_ARCH=sm_60). When
|
||||
enabled, this option uses the CUDA_* build options, see below.
|
||||
|
||||
MFEM_USE_HIP = YES/NO
|
||||
Enables support for AMD devices in MFEM. HIP is a heterogeneous-compute
|
||||
interface for portability developed by AMD that can target both AMD and
|
||||
NVIDIA GPUs. The variable HIP_ARCH is used to specify the AMD GPU processor
|
||||
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
|
||||
option uses the HIP_* build options, see below.
|
||||
|
||||
MFEM_USE_RAJA = YES/NO
|
||||
Enable support for the RAJA performance portability layer in MFEM. RAJA
|
||||
provides a portable abstraction for loops, supporting different programming
|
||||
model backends. When using RAJA built with CUDA support, CUDA support must be
|
||||
also enabled in MFEM, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_USE_OCCA = YES/NO
|
||||
Enables support for the OCCA library in MFEM. OCCA is an open-source library
|
||||
which aims to make it easy to program different types of devices (e.g. CPU,
|
||||
GPU, FPGA) by providing an unified API for interacting with JIT-compiled
|
||||
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
|
||||
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_USE_GSLIB = YES/NO
|
||||
Enables MFEM functionality based on the GSLIB library, and specifically its
|
||||
FindPoints component, which provides a robust algorithms to evaluate finite
|
||||
element functions in a collection of points in physical space. When enabled,
|
||||
the user can use the GSLIB-FindPoints methods as shown in miniapps/gslib.
|
||||
|
||||
MFEM_USE_CEED = YES/NO
|
||||
Enables support for the libCEED library in MFEM. libCEED is a portable
|
||||
library for performant high-order operator evaluation developed by the Center
|
||||
for Efficient Exascale Discretizations in the Exascale Computing Project.
|
||||
|
||||
MFEM_USE_MKL_CPARDISO = YES/NO
|
||||
Enables the interface to MKL CPardiso: the Intel MKL Parallel Direct Sparse
|
||||
Solver for Clusters. Make sure to set the correct values for MKL_MPI_WRAPPER
|
||||
and MKL_LIBRARY_SUBDIR as shown in defaults.mk. If you configure MFEM with
|
||||
MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
|
||||
OpenMP capabilities are disabled at link time.
|
||||
|
||||
MFEM_USE_CALIPER = YES/NO
|
||||
Enables the interface to Caliper. Caliper is a library to integrate
|
||||
performance profiling capabilities into applications. To use Caliper,
|
||||
developers mark code regions of interest using either Caliper's annotation
|
||||
API or their equivalent in MFEM. Applications can then enable performance
|
||||
profiling at runtime with Caliper's configuration API. Alternatively, one
|
||||
can configure Caliper through environment variables or config files.
|
||||
|
||||
MFEM_USE_FMS = YES/NO
|
||||
Enables support for the FMS library which consists of the DataCollection
|
||||
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
|
||||
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
|
||||
convetion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
DataCollection class, see the header file fem/fmsconvert.hpp.
|
||||
|
||||
MFEM_USE_PARELAG = YES/NO
|
||||
Enables the miniapps that use the ParELAG library. MFEM does not currently
|
||||
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_BUILD_TAG = (any value)
|
||||
An optional tag to characterize the build. Exported to config/config.mk.
|
||||
@@ -561,18 +383,13 @@ directory and use the string @MFEM_DIR@, e.g. HYPRE_OPT = -I@MFEM_DIR@/../hypre.
|
||||
The specific libraries and their options are:
|
||||
|
||||
- HYPRE, required for the parallel build, i.e. when MFEM_USE_MPI = YES.
|
||||
See also the "Specific options for hypre" section at the end of this file.
|
||||
URL: https://github.com/hypre-space/hypre and https://www.llnl.gov/casc/hypre
|
||||
URL: http://www.llnl.gov/CASC/hypre
|
||||
Options: HYPRE_OPT, HYPRE_LIB.
|
||||
Versions: HYPRE >= 2.10.0b (HYPRE built without CUDA)
|
||||
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
|
||||
HYPRE >= 2.22.1 (HYPRE built with CUDA)
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
|
||||
- LAPACK (optional), used when MFEM_USE_LAPACK = YES. Alternative, optimized
|
||||
implementations can also be used, e.g. the ATLAS project.
|
||||
@@ -580,8 +397,7 @@ The specific libraries and their options are:
|
||||
http://math-atlas.sourceforge.net (ATLAS)
|
||||
Options: LAPACK_OPT (currently not used/needed), LAPACK_LIB.
|
||||
|
||||
- OpenMP (optional), usually part of compiler, used when either MFEM_USE_OPENMP
|
||||
or MFEM_USE_LEGACY_OPENMP is set to YES.
|
||||
- OpenMP (optional), usually part of compiler, used when MFEM_USE_OPENMP = YES.
|
||||
Options: OPENMP_OPT, OPENMP_LIB.
|
||||
|
||||
- High-resolution POSIX clocks: when using MFEM_TIMER_TYPE = 2, it may be
|
||||
@@ -591,68 +407,39 @@ The specific libraries and their options are:
|
||||
- SUNDIALS (optional), used when MFEM_USE_SUNDIALS = YES.
|
||||
Beginning with MFEM v3.3, SUNDIALS v2.7.0 is supported.
|
||||
Beginning with MFEM v3.3.2, SUNDIALS v3.0.0 is also supported.
|
||||
Beginning with MFEM v4.1, only SUNDIALS v5.0.0+ is supported.
|
||||
When MFEM_USE_CUDA is enabled, only SUNDIALS v5.4.0+ is supported.
|
||||
If MFEM_USE_MPI is enabled, we expect that SUNDIALS is built with support for
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
|
||||
|
||||
- Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
|
||||
URL: http://trilinos.org/oldsite/packages/mesquite
|
||||
Options: MESQUITE_OPT, MESQUITE_LIB.
|
||||
The Mesquite support is deprecated and will be removed in the future.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
Options: SUITESPARSE_OPT, SUITESPARSE_LIB.
|
||||
Versions: SuiteSparse >= 4.5.4, older versions may work too.
|
||||
|
||||
- SuperLU_DIST (optional), used when MFEM_USE_SUPERLU = YES. Note that
|
||||
SuperLU_DIST requires ParMETIS, which includes METIS 5 in its distribution.
|
||||
Both ParMETIS and the included METIS 5 should be built and installed in the
|
||||
same location. If using SuperLU_Dist v5, set MFEM_USE_SUPERLU5=YES.
|
||||
same location.
|
||||
URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU
|
||||
Options: SUPERLU_OPT, SUPERLU_LIB.
|
||||
Versions: SuperLU_DIST >= 5.1.0.
|
||||
|
||||
- MUMPS (optional), used when MFEM_USE_MUMPS = YES. Note that MUMPS
|
||||
requires LAPACK, SCALAPACK and a reordering package such as PORD or METIS.
|
||||
URL: http://mumps.enseeiht.fr
|
||||
Options: MUMPS_OPT, MUMPS_LIB.
|
||||
Versions: MUMPS >= 5.1.1
|
||||
|
||||
- STRUMPACK (optional), used when MFEM_USE_STRUMPACK = YES. Note that STRUMPACK
|
||||
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
|
||||
includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
|
||||
and PT-Scotch are optional dependencies.
|
||||
includes METIS 5 in its distribution.
|
||||
The support for STRUMPACK was added in MFEM v3.3.2 and it requires STRUMPACK
|
||||
2.0.0 or later.
|
||||
URL: http://portal.nersc.gov/project/sparse/strumpack
|
||||
Options: STRUMPACK_OPT, STRUMPACK_LIB.
|
||||
Versions: STRUMPACK >= 3.0.0.
|
||||
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
|
||||
C++ compiler that supports the C++-14 standard. For additional requirements
|
||||
and dependencies of specific modules, see the Ginkgo webpage below.
|
||||
URL: https://ginkgo-project.github.io
|
||||
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or Debug).
|
||||
Versions: Ginkgo >= 1.4.0.
|
||||
|
||||
- AmgX (optional), used when MFEM_USE_AMGX = YES.
|
||||
URL: https://github.com/NVIDIA/AMGX
|
||||
Options: AMGX_OPT, AMGX_LIB.
|
||||
Versions: AmgX >= 2.1, older versions may work too.
|
||||
|
||||
- GnuTLS (optional), used when MFEM_USE_GNUTLS = YES. On most Linux systems,
|
||||
GnuTLS is available as a development package, e.g. gnutls-devel. On Mac OS X,
|
||||
one can get the library through the Homebrew package manager (http://brew.sh).
|
||||
URL: http://gnutls.org
|
||||
Options: GNUTLS_OPT, GNUTLS_LIB.
|
||||
Versions: GnuTLS >= 2.12.0, older versions may work too.
|
||||
|
||||
- NetCDF (optional), used when MFEM_USE_NETCDF = YES, required for reading Cubit
|
||||
mesh files. Also requires installation of HDF5 and ZLIB, as explained at the
|
||||
@@ -660,7 +447,6 @@ The specific libraries and their options are:
|
||||
don't need the C++ or parallel versions.
|
||||
URL: www.unidata.ucar.edu/software/netcdf
|
||||
Options: NETCDF_OPT, NETCDF_LIB.
|
||||
Versions: NetCDF >= 4.4.0.
|
||||
|
||||
- PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.8 or higher of
|
||||
the PETSC dev branch is required. The MFEM and PETSc builds can share common
|
||||
@@ -672,106 +458,22 @@ The specific libraries and their options are:
|
||||
--with-shared-libraries=0
|
||||
URL: https://www.mcs.anl.gov/petsc
|
||||
Options: PETSC_OPT, PETSC_LIB.
|
||||
Versions: PETSc >= 3.8.0 (PETSc build without CUDA)
|
||||
PETSc >= 3.15.0 (PETSc built with CUDA)
|
||||
|
||||
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
|
||||
uses some of the PETSc options when compiled.
|
||||
URL: https://slepc.upv.es/
|
||||
Options: SLEPC_OPT, SLEPC_LIB.
|
||||
Versions: SLEPc >= 3.8.0.
|
||||
|
||||
- Sidre (optional), part of LLNL's axom project, used when MFEM_USE_SIDRE = YES.
|
||||
Starting with MFEM v4.1, Axom version 0.3.1 or later is required.
|
||||
URL: https://github.com/LLNL/axom
|
||||
URL: http://goo.gl/cZyJdn (axom, to be released)
|
||||
https://github.com/LLNL/conduit (Conduit)
|
||||
https://support.hdfgroup.org/HDF5 (HDF5)
|
||||
Options: SIDRE_OPT, SIDRE_LIB.
|
||||
Versions: Axom >= 0.3.1.
|
||||
|
||||
- Conduit (optional), used when MFEM_USE_CONDUIT = YES. Conduit Mesh Blueprint
|
||||
- Conduit, used when MFEM_USE_CONDUIT = YES. Direct Conduit Mesh Blueprint
|
||||
support requires Conduit >= v0.3.1 and VisIt >= v2.13.1 to read the output.
|
||||
URL: https://github.com/LLNL/conduit (Conduit)
|
||||
https://support.hdfgroup.org/HDF5 (HDF5)
|
||||
Options: CONDUIT_OPT, CONDUIT_LIB.
|
||||
Versions: Conduit >= 0.3.1.
|
||||
|
||||
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
|
||||
URL: https://adios2.readthedocs.io/
|
||||
Versions: ADIOS >= 2.5.0.
|
||||
|
||||
- PUMI (optional), used when MFEM_USE_PUMI = YES.
|
||||
- PUMI, used when MFEM_USE_PUMI = YES.
|
||||
URL: https://scorec.rpi.edu/pumi
|
||||
https://github.com/SCOREC/core
|
||||
Options: PUMI_OPT, PUMI_LIB.
|
||||
Versions: PUMI == 2.2.3.
|
||||
|
||||
- HiOp (optional), used when MFEM_USE_HIOP = YES.
|
||||
URL: https://github.com/LLNL/hiop
|
||||
Options: HIOP_OPT, HIOP_LIB.
|
||||
Versions: HIOP >= 0.4.6.
|
||||
|
||||
- CoDiPack (optiobal), used with MFEM_USE_CODIPACK = YES
|
||||
URL: https://www.scicomp.uni-kl.de/codi/
|
||||
Options: CODIPACK_OPT
|
||||
Versions: 1.9.3
|
||||
|
||||
- GSLIB (optional), used when MFEM_USE_GSLIB = YES. The gslib library must be
|
||||
built prior to the MFEM build, as follows: download gslib-1.0.7, untar it at
|
||||
the same level as MFEM and create a symbolic link: "ln -s gslib-1.0.7 gslib".
|
||||
Build gslib in parallel or in serial based on the desired MFEM build: "make
|
||||
clean; make CC=mpicc" or "make clean; make CC=gcc MPI=0". Build MFEM with
|
||||
MFEM_USE_GSLIB=YES.
|
||||
URL: https://github.com/gslib/gslib/archive/v1.0.7.tar.gz
|
||||
Options: GSLIB_OPT, GSLIB_LIB.
|
||||
Versions: GSLIB >= 1.0.7.
|
||||
|
||||
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
|
||||
URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
|
||||
Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
|
||||
Versions: Intel MKL >= 2020.
|
||||
|
||||
- CUDA (optional), used when MFEM_USE_CUDA = YES.
|
||||
URL: https://developer.nvidia.com/cuda-toolkit
|
||||
Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
|
||||
Versions: CUDA >= 10.1.168.
|
||||
|
||||
- HIP (optional), used when MFEM_USE_HIP = YES.
|
||||
URL: https://rocm.github.io/ROCmInstall.html
|
||||
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
|
||||
|
||||
- OCCA (optional), used when MFEM_USE_OCCA = YES.
|
||||
URL: https://libocca.org
|
||||
Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
|
||||
Versions: OCCA >= 1.1.0.
|
||||
|
||||
- libCEED (optional), used when MFEM_USE_CEED = YES.
|
||||
URL: https://github.com/CEED/libCEED
|
||||
https://ceed.exascaleproject.org/libceed
|
||||
Options: CEED_DIR, CEED_OPT, CEED_LIB.
|
||||
Versions: libCEED >= 0.8.
|
||||
|
||||
- RAJA (optional), used when MFEM_USE_RAJA = YES.
|
||||
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
|
||||
URL: https://github.com/LLNL/RAJA
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 0.14.0.
|
||||
|
||||
- Caliper (optional), used when MFEM_USE_CALIPER = YES.
|
||||
URL: https://github.com/LLNL/Caliper
|
||||
Options: CALIPER_DIR
|
||||
Versions: CALIPER >= 2.5.0, older versions may work too.
|
||||
|
||||
- Umpire, used when MFEM_USE_UMPIRE = YES.
|
||||
Umpire requires camp when the Umpire version is >= 3.0.0.
|
||||
URL: https://github.com/LLNL/Umpire
|
||||
Options: UMPIRE_DIR, UMPIRE_OPT, UMPIRE_LIB.
|
||||
Versions: Umpire >= 3.0.0.
|
||||
|
||||
- Benchmark, used when MFEM_USE_BENCHMARK = YES.
|
||||
URL: https://github.com/google/benchmark
|
||||
Options: BENCHMARK_DIR, BENCHMARK_LIB.
|
||||
Versions: Benchmark >= 1.5.6.
|
||||
|
||||
- MPFR (optional), used when MFEM_USE_MPFR = YES.
|
||||
URL: http://mpfr.org, it depends on the GMP library: https://gmplib.org
|
||||
@@ -783,19 +485,11 @@ The specific libraries and their options are:
|
||||
URL: http://www.nongnu.org/libunwind
|
||||
Options: LIBUNWIND_OPT, LIBUNWIND_LIB.
|
||||
|
||||
- ZLIB (optional), used when MFEM_USE_ZLIB = YES, or when MFEM_USE_NETCDF =
|
||||
- ZLIB (optional), used when MFEM_USE_GZSTREAM = YES, or when MFEM_USE_NETCDF =
|
||||
YES (in the default settings for NETCDF_OPT and NETCDF_LIB).
|
||||
URL: https://zlib.net
|
||||
Options: ZLIB_OPT, ZLIB_LIB.
|
||||
|
||||
- FMS (optional), used when MFEM_USE_FMS = YES.
|
||||
URL: https://github.com/CEED/FMS
|
||||
Options: FMS_OPT, FMS_LIB.
|
||||
Versions: FMS >= 0.2.
|
||||
|
||||
- ParELAG, used when MFEM_USE_PARELAG = YES.
|
||||
URL: https://github.com/LLNL/parelag
|
||||
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
|
||||
|
||||
Building with CMake
|
||||
===================
|
||||
@@ -885,8 +579,6 @@ Configuration variables (CMake)
|
||||
===============================
|
||||
See the configuration file config/defaults.cmake for the default settings.
|
||||
|
||||
Note: the option MFEM_USE_CUDA requires CMake version 3.8 or newer!
|
||||
|
||||
Non-standard CMake variables for compilers:
|
||||
CXX - If set, overwrite the auto-detected C++ compiler, serial build
|
||||
MPICXX - If set, overwrite the auto-detected MPI C++ compiler, parallel build
|
||||
@@ -904,35 +596,18 @@ MFEM_USE_METIS - Set to ${MFEM_USE_MPI}, can be overwritten.
|
||||
MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK
|
||||
MFEM_THREAD_SAFE
|
||||
MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC
|
||||
MFEM_TIMER_TYPE - Set automatically, can be overwritten.
|
||||
MFEM_USE_MESQUITE
|
||||
MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU
|
||||
MFEM_USE_MUMPS
|
||||
MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO
|
||||
MFEM_USE_AMGX
|
||||
MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF
|
||||
MFEM_USE_MPFR
|
||||
MFEM_USE_ZLIB
|
||||
MFEM_USE_GZSTREAM
|
||||
MFEM_USE_PUMI
|
||||
MFEM_USE_HIOP
|
||||
MFEM_USE_CODIPACK
|
||||
MFEM_USE_ADFORWARD
|
||||
MFEM_USE_CUDA
|
||||
MFEM_USE_OCCA
|
||||
MFEM_USE_CEED
|
||||
MFEM_USE_RAJA
|
||||
MFEM_USE_UMPIRE
|
||||
MFEM_USE_SIDRE
|
||||
MFEM_USE_CALIPER
|
||||
MFEM_USE_FMS
|
||||
MFEM_USE_BENCHMARK
|
||||
MFEM_USE_PARELAG
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -969,28 +644,16 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
|
||||
- HYPRE
|
||||
- METIS - The option MFEM_USE_METIS_5 is auto-detected.
|
||||
- ParMETIS
|
||||
- MESQUITE
|
||||
- SuiteSparse
|
||||
- SuperLUDist, STRUMPACK
|
||||
- Ginkgo
|
||||
- AMGX
|
||||
- ParMETIS
|
||||
- GNUTLS - Extends the built-in CMake support, to search GNUTLS_DIR as well.
|
||||
- NETCDF
|
||||
- MPFR
|
||||
- LIBUNWIND
|
||||
- POSIXCLOCKS
|
||||
- PUMI
|
||||
- HIOP
|
||||
- CoDiPack
|
||||
- OCCA
|
||||
- RAJA
|
||||
- UMPIRE
|
||||
- AXOM - Used when MFEM_USE_SIDRE is enabled
|
||||
- CALIPER
|
||||
- FMS
|
||||
- BENCHMARK
|
||||
- ParELAG
|
||||
|
||||
The following built-in CMake packages are also used:
|
||||
|
||||
@@ -1008,7 +671,7 @@ config/config.hpp.in:
|
||||
|
||||
cp config/config.hpp.in config/_config.hpp
|
||||
|
||||
The file config/_config.hpp can then be edited to enable desired options. The
|
||||
The file config/_config.hpp can then be edited to enable desired options. The
|
||||
MFEM library is simply a combination of all object files obtained by compiling
|
||||
the .cpp source files in the source directories: general, linalg, mesh, and fem.
|
||||
|
||||
@@ -1016,7 +679,7 @@ the .cpp source files in the source directories: general, linalg, mesh, and fem.
|
||||
Specifying an MPI job launcher
|
||||
==============================
|
||||
By default, MFEM will use 'mpirun -np #' to launch any of its parallel tests or
|
||||
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
|
||||
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
|
||||
provided by setting the MFEM_MPIEXEC and MFEM_MPIEXEC_NP config variables.
|
||||
|
||||
MFEM will expect the launcher command, plus the command line option to allow it
|
||||
@@ -1026,19 +689,3 @@ MFEM_MPIEXEC = mpirun # default
|
||||
MFEM_MPIEXEC_NP = -np # default
|
||||
MFEM_MPIEXEC = srun # example for platforms using SLURM
|
||||
MFEM_MPIEXEC_NP = -n # example for platforms using SLURM
|
||||
|
||||
|
||||
Specific options for hypre
|
||||
==========================
|
||||
The hypre library has multiple options to define local and global index storage
|
||||
sizes. By default, all indices are stored as an architecture aware integer. For
|
||||
most platforms, this will be 32-bit. This limits the maximum number of global
|
||||
degrees of freedom in a vector or matrix to about 2 billion. In order to solve
|
||||
larger problems, there are two options:
|
||||
|
||||
1. Building hypre with '--enable-bigint' defines the local and global indices to
|
||||
be 64-bit. This is convenient, but requires more memory than necessary.
|
||||
|
||||
2. Building hypre with '--enable-mixedint' defines the local indiced to be
|
||||
32-bit, while using a 64-bit storage for global indices. This option is
|
||||
currently tested only in ex1p, and may not work in more general settings.
|
||||
|
||||
@@ -1,29 +1,504 @@
|
||||
BSD 3-Clause License
|
||||
GNU LESSER GENERAL PUBLIC LICENSE
|
||||
Version 2.1, February 1999
|
||||
|
||||
Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC
|
||||
All rights reserved.
|
||||
Copyright (C) 1991, 1999 Free Software Foundation, Inc.
|
||||
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|
||||
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|
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|
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|
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|
||||
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|
||||
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|
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|
||||
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|
||||
|
||||
* Redistributions of source code must retain the above copyright notice, this
|
||||
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|
||||
Preamble
|
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
Library), the recipient automatically receives a license from the
|
||||
original licensor to copy, distribute, link with or modify the Library
|
||||
subject to these terms and conditions. You may not impose any further
|
||||
restrictions on the recipients' exercise of the rights granted herein.
|
||||
You are not responsible for enforcing compliance by third parties with
|
||||
this License.
|
||||
|
||||
11. If, as a consequence of a court judgment or allegation of patent
|
||||
infringement or for any other reason (not limited to patent issues),
|
||||
conditions are imposed on you (whether by court order, agreement or
|
||||
otherwise) that contradict the conditions of this License, they do not
|
||||
excuse you from the conditions of this License. If you cannot
|
||||
distribute so as to satisfy simultaneously your obligations under this
|
||||
License and any other pertinent obligations, then as a consequence you
|
||||
may not distribute the Library at all. For example, if a patent
|
||||
license would not permit royalty-free redistribution of the Library by
|
||||
all those who receive copies directly or indirectly through you, then
|
||||
the only way you could satisfy both it and this License would be to
|
||||
refrain entirely from distribution of the Library.
|
||||
|
||||
If any portion of this section is held invalid or unenforceable under any
|
||||
particular circumstance, the balance of the section is intended to apply,
|
||||
and the section as a whole is intended to apply in other circumstances.
|
||||
|
||||
It is not the purpose of this section to induce you to infringe any
|
||||
patents or other property right claims or to contest validity of any
|
||||
such claims; this section has the sole purpose of protecting the
|
||||
integrity of the free software distribution system which is
|
||||
implemented by public license practices. Many people have made
|
||||
generous contributions to the wide range of software distributed
|
||||
through that system in reliance on consistent application of that
|
||||
system; it is up to the author/donor to decide if he or she is willing
|
||||
to distribute software through any other system and a licensee cannot
|
||||
impose that choice.
|
||||
|
||||
This section is intended to make thoroughly clear what is believed to
|
||||
be a consequence of the rest of this License.
|
||||
|
||||
12. If the distribution and/or use of the Library is restricted in
|
||||
certain countries either by patents or by copyrighted interfaces, the
|
||||
original copyright holder who places the Library under this License may add
|
||||
an explicit geographical distribution limitation excluding those countries,
|
||||
so that distribution is permitted only in or among countries not thus
|
||||
excluded. In such case, this License incorporates the limitation as if
|
||||
written in the body of this License.
|
||||
|
||||
13. The Free Software Foundation may publish revised and/or new
|
||||
versions of the Lesser General Public License from time to time.
|
||||
Such new versions will be similar in spirit to the present version,
|
||||
but may differ in detail to address new problems or concerns.
|
||||
|
||||
Each version is given a distinguishing version number. If the Library
|
||||
specifies a version number of this License which applies to it and
|
||||
"any later version", you have the option of following the terms and
|
||||
conditions either of that version or of any later version published by
|
||||
the Free Software Foundation. If the Library does not specify a
|
||||
license version number, you may choose any version ever published by
|
||||
the Free Software Foundation.
|
||||
|
||||
14. If you wish to incorporate parts of the Library into other free
|
||||
programs whose distribution conditions are incompatible with these,
|
||||
write to the author to ask for permission. For software which is
|
||||
copyrighted by the Free Software Foundation, write to the Free
|
||||
Software Foundation; we sometimes make exceptions for this. Our
|
||||
decision will be guided by the two goals of preserving the free status
|
||||
of all derivatives of our free software and of promoting the sharing
|
||||
and reuse of software generally.
|
||||
|
||||
NO WARRANTY
|
||||
|
||||
15. BECAUSE THE LIBRARY IS LICENSED FREE OF CHARGE, THERE IS NO
|
||||
WARRANTY FOR THE LIBRARY, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
|
||||
EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR
|
||||
OTHER PARTIES PROVIDE THE LIBRARY "AS IS" WITHOUT WARRANTY OF ANY
|
||||
KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE
|
||||
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
|
||||
PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE
|
||||
LIBRARY IS WITH YOU. SHOULD THE LIBRARY PROVE DEFECTIVE, YOU ASSUME
|
||||
THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
|
||||
|
||||
16. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN
|
||||
WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY
|
||||
AND/OR REDISTRIBUTE THE LIBRARY AS PERMITTED ABOVE, BE LIABLE TO YOU
|
||||
FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR
|
||||
CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE
|
||||
LIBRARY (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING
|
||||
RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A
|
||||
FAILURE OF THE LIBRARY TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF
|
||||
SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH
|
||||
DAMAGES.
|
||||
|
||||
END OF TERMS AND CONDITIONS
|
||||
|
||||
How to Apply These Terms to Your New Libraries
|
||||
|
||||
If you develop a new library, and you want it to be of the greatest
|
||||
possible use to the public, we recommend making it free software that
|
||||
everyone can redistribute and change. You can do so by permitting
|
||||
redistribution under these terms (or, alternatively, under the terms of the
|
||||
ordinary General Public License).
|
||||
|
||||
To apply these terms, attach the following notices to the library. It is
|
||||
safest to attach them to the start of each source file to most effectively
|
||||
convey the exclusion of warranty; and each file should have at least the
|
||||
"copyright" line and a pointer to where the full notice is found.
|
||||
|
||||
<one line to give the library's name and a brief idea of what it does.>
|
||||
Copyright (C) <year> <name of author>
|
||||
|
||||
This library is free software; you can redistribute it and/or
|
||||
modify it under the terms of the GNU Lesser General Public
|
||||
License as published by the Free Software Foundation; either
|
||||
version 2.1 of the License, or (at your option) any later version.
|
||||
|
||||
This library is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
||||
Lesser General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public
|
||||
License along with this library; if not, write to the Free Software
|
||||
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
|
||||
|
||||
Also add information on how to contact you by electronic and paper mail.
|
||||
|
||||
You should also get your employer (if you work as a programmer) or your
|
||||
school, if any, to sign a "copyright disclaimer" for the library, if
|
||||
necessary. Here is a sample; alter the names:
|
||||
|
||||
Yoyodyne, Inc., hereby disclaims all copyright interest in the
|
||||
library `Frob' (a library for tweaking knobs) written by James Random Hacker.
|
||||
|
||||
<signature of Ty Coon>, 1 April 1990
|
||||
Ty Coon, President of Vice
|
||||
|
||||
That's all there is to it!
|
||||
|
||||
* Neither the name of the copyright holder nor the names of its
|
||||
contributors may be used to endorse or promote products derived from
|
||||
this software without specific prior written permission.
|
||||
|
||||
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
|
||||
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
|
||||
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
|
||||
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
|
||||
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
|
||||
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
|
||||
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
|
||||
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
|
||||
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
|
||||
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
@@ -1,33 +0,0 @@
|
||||
This work was produced under the auspices of the U.S. Department of Energy by
|
||||
Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.
|
||||
|
||||
This work was prepared as an account of work sponsored by an agency of
|
||||
the United States Government. Neither the United States Government nor
|
||||
Lawrence Livermore National Security, LLC, nor any of their employees
|
||||
makes any warranty, expressed or implied, or assumes any legal liability
|
||||
or responsibility for the accuracy, completeness, or usefulness of any
|
||||
information, apparatus, product, or process disclosed, or represents that
|
||||
its use would not infringe privately owned rights.
|
||||
|
||||
Reference herein to any specific commercial product, process, or service
|
||||
by trade name, trademark, manufacturer, or otherwise does not necessarily
|
||||
constitute or imply its endorsement, recommendation, or favoring by the
|
||||
United States Government or Lawrence Livermore National Security, LLC.
|
||||
|
||||
The views and opinions of authors expressed herein do not necessarily
|
||||
state or reflect those of the United States Government or Lawrence
|
||||
Livermore National Security, LLC, and shall not be used for advertising
|
||||
or product endorsement purposes.
|
||||
|
||||
Inclusion of external software:
|
||||
|
||||
This project distributes the sources of several external software products with
|
||||
their own respective licenses which can be found in their code and attached
|
||||
license files. These software products and their licenses are as follows:
|
||||
|
||||
* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
|
||||
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
|
||||
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
|
||||
* Picojson (fem/picojson.h) -- Custom 2-clause license
|
||||
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
|
||||
* Zstr (general/zstr.hpp) -- MIT license
|
||||
@@ -5,19 +5,19 @@
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
http://mfem.org
|
||||
|
||||
MFEM is a modular parallel C++ library for finite element methods. Its goal is
|
||||
to enable high-performance scalable finite element discretization research and
|
||||
application development on a wide variety of platforms, ranging from laptops to
|
||||
supercomputers.
|
||||
to enable the research and development of scalable finite element discretization
|
||||
and solver algorithms through general finite element abstractions, accurate and
|
||||
flexible visualization, and tight integration with the hypre library.
|
||||
|
||||
* For building instructions, see the file INSTALL, or type "make help".
|
||||
|
||||
* Copyright and licensing information can be found in files LICENSE and NOTICE.
|
||||
* Copyright and licensing information can be found in the file COPYRIGHT.
|
||||
|
||||
* The best starting point for new users interested in MFEM's features is to
|
||||
review the examples and miniapps at https://mfem.org/examples.
|
||||
* The best starting point for new users interested in MFEM's features is the
|
||||
interactive documentation in examples/README.html.
|
||||
|
||||
* Developers interested in contributing to the library, should read the
|
||||
instructions and documentation in the CONTRIBUTING.md file.
|
||||
@@ -39,31 +39,29 @@ conforming and non-conforming (AMR) adaptive refinement. Arbitrary element
|
||||
transformations, allowing for high-order mesh elements with curved boundaries,
|
||||
are also supported.
|
||||
|
||||
When used as a "finite element to linear algebra translator", MFEM can take a
|
||||
problem described in terms of finite element-type objects, and produce the
|
||||
corresponding linear algebra vectors and fully or partially assembled operators,
|
||||
e.g. in the form of global sparse matrices or matrix-free operators. The library
|
||||
includes simple smoothers and Krylov solvers, such as PCG, MINRES and GMRES, as
|
||||
well as support for sequential sparse direct solvers from the SuiteSparse
|
||||
MFEM is commonly used as a "finite element to linear algebra translator", since
|
||||
it can take a problem described in terms of finite element-type objects, and
|
||||
produce the corresponding linear algebra vectors and sparse matrices. In order
|
||||
to facilitate this, MFEM uses compressed sparse row (CSR) sparse matrix storage
|
||||
and includes simple smoothers and Krylov solvers, such as PCG, MINRES and GMRES,
|
||||
as well as support for sequential sparse direct solvers from the SuiteSparse
|
||||
library. Nonlinear solvers (the Newton method), eigensolvers (LOBPCG), and
|
||||
several explicit and implicit Runge-Kutta time integrators are also available.
|
||||
|
||||
MFEM supports MPI-based parallelism throughout the library, and can readily be
|
||||
used as a scalable unstructured finite element problem generator. Starting with
|
||||
version 4.0, MFEM offers support for GPU acceleration, and programming models,
|
||||
such as CUDA, HIP, OCCA, RAJA and OpenMP. MFEM-based applications require
|
||||
minimal changes to switch from a serial to a highly-performant MPI-parallel
|
||||
version of the code, where they can take advantage of the integrated linear
|
||||
solvers from the hypre library. Comprehensive support for other external
|
||||
packages, e.g. PETSc, SUNDIALS and libCEED is also included, giving access to
|
||||
additional linear and nonlinear solvers, preconditioners, time integrators, etc.
|
||||
used as a scalable unstructured finite element problem generator. MFEM-based
|
||||
applications require minimal changes to transition from a serial to a
|
||||
high-performing parallel version of the code, where they can take advantage of
|
||||
the integrated scalable linear solvers from the hypre library. Comprehensive
|
||||
support for other external packages, e.g. PETSc and SUNDIALS is also included,
|
||||
giving access to many additional linear and nonlinear solvers, preconditioners,
|
||||
time integrators, etc.
|
||||
|
||||
For examples of using MFEM, see the examples/ and miniapps/ directories, as well
|
||||
as the OpenGL visualization tool GLVis which is available at https://glvis.org.
|
||||
as the OpenGL visualization tool GLVis which is available at http://glvis.org.
|
||||
|
||||
MFEM is distributed under the terms of the BSD-3 license. All new contributions
|
||||
must be made under this license. See LICENSE and NOTICE for details.
|
||||
This project is released under the LGPL v2.1 license with static linking
|
||||
exception. See files COPYRIGHT and LICENSE file for full details.
|
||||
|
||||
SPDX-License-Identifier: BSD-3-Clause
|
||||
LLNL Release Number: LLNL-CODE-806117
|
||||
LLNL Release Number: LLNL-CODE-443211
|
||||
DOI: 10.11578/dc.20171025.1248
|
||||
|
||||
@@ -0,0 +1,27 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_ALL_HPP
|
||||
#define MFEM_BACKENDS_ALL_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "base/backend.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
#include "occa/backend.hpp"
|
||||
#endif
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_ALL_HPP
|
||||
@@ -0,0 +1,213 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Extension to the template class Array<T>
|
||||
class PArray : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Layout with shared ownership (smart pointer)
|
||||
DLayout layout;
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new array (in @a *clone) of the same dynamic
|
||||
type as this array using the same layout and ItemSize().
|
||||
|
||||
Set @a *clone to NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this array is copied to the new
|
||||
array; otherwise, the new array remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the array data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const = 0;
|
||||
|
||||
/// Resize the array, reallocating its data if necessary.
|
||||
/** If @a buffer is not NULL, return the array data (in @a *buffer), if it
|
||||
is stored as a contiguous array on the host; otherwise, set @a *buffer to
|
||||
NULL. Returns 0 on success and non-zero otherwise, e.g. if memory
|
||||
allocation fails.
|
||||
|
||||
If the @a new_layout is not supported, a non-zero error code will be
|
||||
returned.
|
||||
|
||||
The @a new_layout has to be valid, i.e. new_layout != NULL and
|
||||
new_layout->HasEngine() == true.
|
||||
|
||||
@note If reallocation is performed, the previous content of the array is
|
||||
NOT copied to the new location. */
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Get access to the contents of the array in host memory, as a
|
||||
contiguous array. */
|
||||
/** If the array data is stored as a contiguous array in host memory, return
|
||||
a pointer to it. Otherwise, copy the data to @a buffer (if @a buffer is
|
||||
not NULL) and return @a buffer.
|
||||
@note If not NULL, @a buffer is assumed to be of size greater than or
|
||||
equal to Size(). */
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Set all entries of the array to the (single) value pointed to by
|
||||
@a value_ptr. */
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Set all Size() entries of the array from the given contiguous
|
||||
array, @a src_buffer, on the host. */
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size) = 0;
|
||||
|
||||
/// Copy the data from @a src to @a *this.
|
||||
/** Both arrays must have the same dynamic type, layout, and item_size. */
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size) = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
/** @brief The @a layout parameter will be reference counted and therefore it
|
||||
should be dynamically allocated. */
|
||||
/** The @a layout must be valid in the sense that layout != NULL and
|
||||
layout->HasEngine() == true. */
|
||||
PArray(PLayout &p_layout)
|
||||
: layout(&p_layout)
|
||||
{
|
||||
MFEM_ASSERT(layout && layout->HasEngine(), "invalid layout");
|
||||
}
|
||||
|
||||
virtual ~PArray() { }
|
||||
|
||||
/// Get the current size of the array.
|
||||
std::size_t Size() const { return layout->Size(); }
|
||||
|
||||
/// Get the current layout of the array.
|
||||
PLayout &GetLayout() const { return *layout; }
|
||||
|
||||
/// TODO
|
||||
/// Note: we cannot use static_cast for class PArray.
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return dynamic_cast<derived_t&>(*this); }
|
||||
|
||||
/// TODO
|
||||
/// Note: we cannot use static_cast for class PArray.
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return dynamic_cast<const derived_t&>(*this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
// TODO: Asynchronous execution interface ...
|
||||
|
||||
|
||||
/**
|
||||
@name Public virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new array (in @a *clone) of the same dynamic
|
||||
type as this array using the same layout and ItemSize().
|
||||
|
||||
Set @a *clone to NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this array is copied to the new
|
||||
array; otherwise, the new array remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the array data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
template <typename T>
|
||||
DArray Clone(bool copy_data, T **buffer) const
|
||||
{ return DArray(DoClone(copy_data, (void**)buffer, sizeof(T))); }
|
||||
|
||||
/// Resize the array, reallocating its data if necessary.
|
||||
/** If @a buffer is not NULL, return the array data (in @a *buffer), if it
|
||||
is stored as a contiguous array on the host; otherwise, set @a *buffer to
|
||||
NULL. Returns 0 on success and non-zero otherwise, e.g. if memory
|
||||
allocation fails.
|
||||
|
||||
If the @a new_layout is not supported, a non-zero error code will be
|
||||
returned.
|
||||
|
||||
The @a new_layout has to be valid, i.e. new_layout != NULL and
|
||||
new_layout->HasEngine() == true.
|
||||
|
||||
@note If reallocation is performed, the previous content of the array is
|
||||
NOT copied to the new location. */
|
||||
template <typename T>
|
||||
int Resize(PLayout &new_layout, T **buffer)
|
||||
{ return DoResize(new_layout, (void**)buffer, sizeof(T)); }
|
||||
|
||||
/// Shortcut for Resize(*layout, buffer).
|
||||
/** This method is useful for updating the array after its layout is changed
|
||||
externally. */
|
||||
template <typename T>
|
||||
int Update(T **buffer)
|
||||
{ return DoResize(*layout, (void**)buffer, sizeof(T)); }
|
||||
|
||||
/// Shortcut for layout->Resize(new_size) followed by Update()
|
||||
template <typename T>
|
||||
int Resize(std::size_t new_size, T **buffer)
|
||||
{ layout->Resize(new_size); return Update(buffer); }
|
||||
|
||||
/** @brief Get access to the contents of the array in host memory, as a
|
||||
contiguous array. */
|
||||
/** If the array data is stored as a contiguous array in host memory, return
|
||||
a pointer to it. Otherwise, copy the data to @a buffer (if @a buffer is
|
||||
not NULL) and return @a buffer.
|
||||
@note If not NULL, @a buffer is assumed to be of size greater than or
|
||||
equal to Size(). */
|
||||
template <typename T>
|
||||
T *PullData(T *buffer)
|
||||
{ return Size() ? (T*)DoPullData((void*)buffer, sizeof(T)) : NULL; }
|
||||
|
||||
/** @brief Set all entries of the array to the (single) value pointed to by
|
||||
@a value_ptr. */
|
||||
template <typename T>
|
||||
void Fill(const T &value) { if (Size()) { DoFill(&value, sizeof(T)); } }
|
||||
|
||||
/** @brief Set all Size() entries of the array from the given contiguous
|
||||
array, @a src_buffer, on the host. */
|
||||
template <typename T>
|
||||
void PushData(const T *src_buffer)
|
||||
{ if (Size()) { DoPushData(src_buffer, sizeof(T)); } }
|
||||
|
||||
/// Copy the data from @a src to @a *this.
|
||||
/** Both arrays must have the same dynamic type, layout, and entry type. */
|
||||
template <typename T>
|
||||
void Assign(const PArray &src) { if (Size()) { DoAssign(src, sizeof(T)); } }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
#include <string>
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include <mpi.h>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// TODO
|
||||
class Backend
|
||||
{
|
||||
public:
|
||||
/// TODO
|
||||
virtual ~Backend() { }
|
||||
|
||||
/// TODO
|
||||
virtual bool Supports(const std::string &engine_spec) const = 0;
|
||||
|
||||
/// TODO
|
||||
virtual Engine *Create(const std::string &engine_spec) = 0;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// TODO
|
||||
virtual Engine *Create(MPI_Comm comm, const std::string &engine_spec) = 0;
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
@@ -0,0 +1,72 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
#define MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class Vector;
|
||||
class OperatorHandle;
|
||||
class BilinearForm;
|
||||
|
||||
/// TODO: doxygen
|
||||
class PBilinearForm : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
/// Not owned.
|
||||
BilinearForm *bform;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
PBilinearForm(const Engine &e, BilinearForm &bf)
|
||||
: engine(&e), bform(&bf) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~PBilinearForm() { }
|
||||
|
||||
/// Get the associated Engine
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method BilinearForm::Assemble() of the
|
||||
associated BilinearForm #bform.
|
||||
@returns True, if the host assembly should be skipped. */
|
||||
virtual bool Assemble() = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
OperatorHandle &A) = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior) = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void RecoverFEMSolution(const Vector &X, const Vector &b,
|
||||
Vector &x) = 0;
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
@@ -0,0 +1,49 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
Engine::Engine(Backend *b, int n_mem, int n_workers)
|
||||
: backend(b),
|
||||
#ifdef MFEM_USE_MPI
|
||||
comm(MPI_COMM_NULL),
|
||||
#endif
|
||||
num_mem_res(n_mem),
|
||||
num_workers(n_workers),
|
||||
memory_resources(new MemoryResource*[num_mem_res]()),
|
||||
workers_weights(new double[num_workers]()),
|
||||
workers_mem_res(new int[num_workers]())
|
||||
{
|
||||
// Note: all arrays are value-initialized with zeros.
|
||||
}
|
||||
|
||||
Engine::~Engine()
|
||||
{
|
||||
delete [] workers_mem_res;
|
||||
delete [] workers_weights;
|
||||
for (int i = 0; i < num_mem_res; i++)
|
||||
{
|
||||
delete memory_resources[i];
|
||||
}
|
||||
delete [] memory_resources;
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
@@ -0,0 +1,190 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/scalars.hpp"
|
||||
#include "memory_resource.hpp"
|
||||
#include "smart_pointers.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include <mpi.h>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Forward declarations.
|
||||
class Backend;
|
||||
template <typename T> class Array;
|
||||
class Operator;
|
||||
class FiniteElementSpace;
|
||||
class LinearForm;
|
||||
class BilinearForm;
|
||||
class MixedBilinearForm;
|
||||
class NonlinearForm;
|
||||
|
||||
|
||||
/// In parallel, each MPI rank will usually create a single engine.
|
||||
class Engine : public RefCounted
|
||||
{
|
||||
protected:
|
||||
Backend *backend; ///< Backend that created the engine. Not owned.
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
MPI_Comm comm; ///< Associated MPI communicator (may be MPI_COMM_NULL).
|
||||
#endif
|
||||
|
||||
/// Number of memory resources used by the Engine.
|
||||
int num_mem_res;
|
||||
/// Number of workers used by the Engine.
|
||||
int num_workers;
|
||||
|
||||
/// Memory resources used by the engine - array of pointers.
|
||||
/** Both the array and the entries are owned. */
|
||||
MemoryResource **memory_resources;
|
||||
|
||||
/// Relative computational speed of the workers. Owned.
|
||||
double *workers_weights;
|
||||
|
||||
/// For each worker, which memory resource it uses.
|
||||
int *workers_mem_res;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
Engine(Backend *b, int n_mem, int n_workers);
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual ~Engine();
|
||||
|
||||
|
||||
/**
|
||||
@name Machine resources interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Get the associated MPI_Comm
|
||||
MPI_Comm GetComm() const { return comm; }
|
||||
#endif
|
||||
|
||||
/// TODO
|
||||
int GetNumMemRes() const { return num_mem_res; }
|
||||
|
||||
/// TODO
|
||||
MemoryResource &GetMemRes(int idx) const { return *memory_resources[idx]; }
|
||||
|
||||
/// TODO
|
||||
int GetNumWorkers() const { return num_workers; }
|
||||
|
||||
/// TODO
|
||||
const double *GetWorkersWeights() const { return workers_weights; }
|
||||
|
||||
/// TODO
|
||||
const int *GetWorkersMemRes() const { return workers_mem_res; }
|
||||
|
||||
///@}
|
||||
// End: Machine resources interface
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
// TODO: Asynchronous execution in this class ...
|
||||
|
||||
/// Allocate and return a new layout for the given @a size.
|
||||
/** The layout decomposition (in the case of multiple workers) is determined
|
||||
automatically by the Engine using a deterministic algorithm: calls to
|
||||
this method with the same @a size will produce the same result, as long
|
||||
as the Engine remains unmodified between the calls.
|
||||
|
||||
The returned object is allocated with operator new and must be
|
||||
deallocated by the caller.
|
||||
|
||||
TODO: Returns NULL if memory allocation fails?
|
||||
*/
|
||||
virtual DLayout MakeLayout(std::size_t size) const = 0;
|
||||
|
||||
/// Allocate and return a new layout for the given worker decomposition.
|
||||
/** The returned object is allocated with operator new and must be
|
||||
deallocated by the caller.
|
||||
|
||||
TODO: Returns NULL if memory allocation fails?
|
||||
|
||||
The @a offsets should satisfy: offsets.Size() == number of workers + 1,
|
||||
offsets[0] == 0, and offsets[i] <= offsets[i+1], for i: 0 <= i < number
|
||||
of workers. */
|
||||
virtual DLayout MakeLayout(const Array<std::size_t> &offsets) const = 0;
|
||||
|
||||
// Note: There may be other ways to construct layouts in the future, e.g.
|
||||
// block-vector layouts, or multi-vector layouts.
|
||||
|
||||
/// TODO
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const = 0;
|
||||
|
||||
/// Allocate and return a new vector using the given @a layout.
|
||||
/** The returned object is a smart pointer that will automatically deallocate
|
||||
the vector.
|
||||
|
||||
TODO: Produce an error if memory allocation fails?
|
||||
|
||||
Only layouts returned by this Engine are guaranteed to be supported.
|
||||
Using a type that is not supported will produce an error. */
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual DFiniteElementSpace MakeFESpace(FiniteElementSpace &fes) const = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual DBilinearForm MakeBilinearForm(BilinearForm &bf) const = 0;
|
||||
|
||||
|
||||
// Question: How do we construct coefficients?
|
||||
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const = 0;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual Operator *MakeOperator(const MixedBilinearForm &mbl_form) const = 0;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual Operator *MakeOperator(const NonlinearForm &nl_form) const = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
@@ -0,0 +1,98 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
#define MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class FiniteElementSpace;
|
||||
class QuadratureSpace;
|
||||
|
||||
/// TODO: doxygen
|
||||
class PFiniteElementSpace : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
/// Not owned.
|
||||
mfem::FiniteElementSpace *fes;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
PFiniteElementSpace(const Engine &e, mfem::FiniteElementSpace &fespace)
|
||||
: engine(&e), fes(&fespace) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~PFiniteElementSpace() { }
|
||||
|
||||
/// Get the associated engine
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// Return the associated mfem::FiniteElementSpace
|
||||
mfem::FiniteElementSpace *GetFESpace() const { return fes; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element space functionality
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// TODO
|
||||
/** Return the operator mapping T-vectors to L-vectors. If a NULL pointer is
|
||||
returned then the mapping is the idenity. */
|
||||
virtual const mfem::Operator *GetProlongationOperator() const = 0;
|
||||
|
||||
/// TODO
|
||||
/** Return the operator mapping L-vectors to T-vectors that extracts the
|
||||
subset of all true dofs, i.e. no assembly is performed. If a NULL pointer
|
||||
is returned then the mapping is the idenity. */
|
||||
virtual const mfem::Operator *GetRestrictionOperator() const = 0;
|
||||
|
||||
/// TODO
|
||||
/** Return the operator mapping L-vectors to Q-vectors that evaluates the
|
||||
values of a GridFunction as a QuadratureFunction on the given
|
||||
QuadratureSpace. If the returned pointer is NULL, then the mapping is the
|
||||
identity. */
|
||||
virtual const mfem::Operator *GetInterpolationOperator(
|
||||
const mfem::QuadratureSpace &qspace) const = 0;
|
||||
|
||||
/// TODO
|
||||
/** Return the operator mapping L-vectors to Q-vectors that evaluates the
|
||||
_reference element_ gradients of a GridFunction as a QuadratureFunction
|
||||
on the given QuadratureSpace. */
|
||||
virtual const mfem::Operator *GetGradientOperator(
|
||||
const mfem::QuadratureSpace &qspace) const = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
@@ -0,0 +1,110 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "smart_pointers.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic layout (array/vector layout descriptor)
|
||||
class PLayout : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
std::size_t size;
|
||||
|
||||
template <typename DObject>
|
||||
struct Maker
|
||||
{
|
||||
template <typename entry_t>
|
||||
static DObject MakeNew(PLayout &layout);
|
||||
};
|
||||
|
||||
public:
|
||||
explicit PLayout(std::size_t s = 0) : engine(NULL), size(s) { }
|
||||
|
||||
explicit PLayout(const Engine &e, std::size_t s = 0)
|
||||
: engine(&e), size(s) { }
|
||||
|
||||
virtual ~PLayout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size) { size = new_size; }
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets)
|
||||
{ MFEM_ABORT("method not supported"); }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
/// Layouts without engine cannot create DArray, DVector, etc.
|
||||
bool HasEngine() const { return engine != NULL; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// TODO: doxygen
|
||||
std::size_t Size() const { return size; }
|
||||
|
||||
/// TODO
|
||||
/** Useful in backends for down-casting to a backend-specific layout type.
|
||||
|
||||
When MFEM_DEBUG=YES, performs a type check using dynamic_cast. */
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
/** Useful in backends for down-casting to a backend-specific layout type.
|
||||
|
||||
When MFEM_DEBUG=YES, performs a type check using dynamic_cast. */
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename DObject, typename entry_t>
|
||||
DObject Make()
|
||||
{
|
||||
MFEM_ASSERT(HasEngine(), "this method requires an Engine");
|
||||
return Maker<DObject>::template MakeNew<entry_t>(*this);
|
||||
}
|
||||
};
|
||||
|
||||
template <> struct PLayout::Maker<DArray>
|
||||
{
|
||||
template <typename entry_t> static DArray MakeNew(PLayout &layout)
|
||||
{ return layout.GetEngine().MakeArray(layout, sizeof(entry_t)); }
|
||||
};
|
||||
|
||||
template <> struct PLayout::Maker<DVector>
|
||||
{
|
||||
template <typename entry_t> static DVector MakeNew(PLayout &layout)
|
||||
{ return layout.GetEngine().MakeVector(layout, ScalarId<entry_t>::value); }
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
@@ -0,0 +1,59 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
#include <cstdlib>
|
||||
#include <cstring>
|
||||
#include <cerrno>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
void *NewDeleteMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p = ::operator new[](bytes);
|
||||
MFEM_VERIFY(!alignment || (std::size_t)(p) % alignment == 0,
|
||||
"invalid alignment");
|
||||
return p;
|
||||
}
|
||||
|
||||
void NewDeleteMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
::operator delete[](p);
|
||||
}
|
||||
|
||||
|
||||
void *AlignedMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p;
|
||||
if (!alignment) { alignment = sizeof(long double); }
|
||||
MFEM_VERIFY(posix_memalign(&p, alignment, bytes) == 0,
|
||||
"error in posix_memalign(): " << strerror(errno));
|
||||
return p;
|
||||
}
|
||||
|
||||
void AlignedMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
free(p);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
@@ -0,0 +1,70 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
#define MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include <cstddef>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic memory resource. Similar to C++17's std::pmr::memory_resource.
|
||||
class MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment) = 0;
|
||||
virtual void DoDeallocate(void* p, std::size_t bytes,
|
||||
std::size_t alignment) = 0;
|
||||
|
||||
public:
|
||||
// Implicitly defined default & copy constructors
|
||||
|
||||
/// Virtual destructor.
|
||||
virtual ~MemoryResource() { }
|
||||
|
||||
/// If alignment == 0, use default alignment.
|
||||
void *Allocate(std::size_t bytes, std::size_t alignment = 0)
|
||||
{ return DoAllocate(bytes, alignment); }
|
||||
|
||||
/// If alignment == 0, use default alignment.
|
||||
void Deallocate(void *p, std::size_t bytes, std::size_t alignment = 0)
|
||||
{ DoDeallocate(p, bytes, alignment); }
|
||||
};
|
||||
|
||||
|
||||
/** @brief Dynamic host memory resource using operator new[](std::size_t) for
|
||||
allocation and operator delete[](void*) for deallocation. */
|
||||
class NewDeleteMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
|
||||
|
||||
/** @brief Dynamic host memory resource using posix_memalign() for aligned
|
||||
allocation and free() for deallocation. */
|
||||
class AlignedMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
@@ -0,0 +1,234 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
#define MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "utils.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
#include <cstddef>
|
||||
|
||||
// #define MFEM_TRACE_SHARED_PTR
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#include "../../general/globals.hpp"
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Base class for classes with simple reference counting.
|
||||
/** Reference counting is performed by the class SharedPtr. */
|
||||
class RefCounted
|
||||
{
|
||||
private:
|
||||
mutable unsigned ref_count;
|
||||
|
||||
/// Only class SharedPtr can access ref_count.
|
||||
template <typename T> friend class SharedPtr;
|
||||
|
||||
public:
|
||||
RefCounted() : ref_count(0) { }
|
||||
|
||||
/** @brief Prevent SharedPtr objects from deleting this object by
|
||||
incrementing the reference counter by one. */
|
||||
void DontDelete() const { ++ref_count; }
|
||||
};
|
||||
|
||||
|
||||
/** @brief Smart pointer class that manages objects of type T derived from class
|
||||
RefCounted. */
|
||||
/** This class is generally meant to work with dynamically allocated object,
|
||||
specifically objects allocated with operator new(). It will invoke operator
|
||||
delete() to destroy the managed object when its reference counter reaches
|
||||
zero. This behavior can be overriden by calling RefCounted::DontDelete() to
|
||||
ensure that an object will not be deleted by a SharedPtr that holds a
|
||||
pointer to it.
|
||||
@note This class is NOT thread-safe and does not support circular ownership.
|
||||
*/
|
||||
template <typename T>
|
||||
class SharedPtr
|
||||
{
|
||||
public:
|
||||
typedef T stored_type;
|
||||
|
||||
private:
|
||||
T *ptr;
|
||||
|
||||
void Init(T *new_ptr)
|
||||
{
|
||||
ptr = new_ptr;
|
||||
if (ptr) { ++ptr->RefCounted::ref_count; }
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#elif 0
|
||||
mfem::out << " [" << _MFEM_FUNC_NAME << "]: ptr = " << ptr;
|
||||
if (ptr)
|
||||
{
|
||||
mfem::out << ", new ref_count = " << ptr->RefCounted::ref_count;
|
||||
}
|
||||
mfem::out << '\n';
|
||||
#endif
|
||||
}
|
||||
void Destroy()
|
||||
{
|
||||
MFEM_ASSERT(!ptr || ptr->RefCounted::ref_count >= 1, "invalid use");
|
||||
if (ptr && --ptr->RefCounted::ref_count == 0) { delete ptr; }
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#elif 0
|
||||
mfem::out << " [" << _MFEM_FUNC_NAME << "]: ptr = " << ptr;
|
||||
if (ptr)
|
||||
{
|
||||
mfem::out << ", new ref_count = " << ptr->RefCounted::ref_count;
|
||||
}
|
||||
mfem::out << '\n';
|
||||
#endif
|
||||
}
|
||||
|
||||
public:
|
||||
SharedPtr() : ptr(NULL)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]: ptr = " << ptr << '\n';
|
||||
#endif
|
||||
}
|
||||
|
||||
SharedPtr(const SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(other.ptr);
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
SharedPtr(const SharedPtr<U> &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(other.Get());
|
||||
}
|
||||
|
||||
explicit SharedPtr(T *p)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(p);
|
||||
}
|
||||
|
||||
~SharedPtr()
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Destroy();
|
||||
}
|
||||
|
||||
SharedPtr &operator=(const SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Reset(other.ptr); return *this;
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
SharedPtr &operator=(const SharedPtr<U> &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Reset(other.Get()); return *this;
|
||||
}
|
||||
|
||||
T &operator*() const { return *ptr; }
|
||||
T *operator->() const { return ptr; }
|
||||
|
||||
operator bool() const { return ptr; }
|
||||
bool operator!() const { return !ptr; }
|
||||
|
||||
template <typename U>
|
||||
bool operator==(const SharedPtr<U> &other) const
|
||||
{ return ptr == other.Get(); }
|
||||
template <typename U>
|
||||
bool operator!=(const SharedPtr<U> &other) const
|
||||
{ return ptr != other.Get(); }
|
||||
|
||||
// Comparison to any type convertible to void *, e.g. the type of NULL.
|
||||
template <typename U>
|
||||
bool operator==(const U &p) const { return ptr == (void*) p; }
|
||||
template <typename U>
|
||||
bool operator!=(const U &p) const { return ptr != (void*) p; }
|
||||
|
||||
T *Get() const { return ptr; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t *As() const { return util::As<derived_t>(ptr); }
|
||||
|
||||
unsigned UseCount() const { return ptr ? ptr->RefCounted::ref_count : 0; }
|
||||
|
||||
void Reset()
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Destroy();
|
||||
ptr = NULL;
|
||||
}
|
||||
|
||||
/// The type U* needs to be implicitly convertible to T*
|
||||
template <typename U>
|
||||
void Reset(U *new_ptr)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
if (ptr != new_ptr) { Destroy(); Init(new_ptr); }
|
||||
}
|
||||
|
||||
void Swap(SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
std::swap(ptr, other.ptr);
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
template <class T>
|
||||
inline void Swap(SharedPtr<T> &a, SharedPtr<T> &b) { a.Swap(b); }
|
||||
|
||||
|
||||
class PLayout;
|
||||
typedef SharedPtr<PLayout> DLayout;
|
||||
|
||||
class PArray;
|
||||
typedef SharedPtr<PArray> DArray;
|
||||
|
||||
class PVector;
|
||||
typedef SharedPtr<PVector> DVector;
|
||||
|
||||
class PFiniteElementSpace;
|
||||
typedef SharedPtr<PFiniteElementSpace> DFiniteElementSpace;
|
||||
|
||||
class PBilinearForm;
|
||||
typedef SharedPtr<PBilinearForm> DBilinearForm;
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
@@ -0,0 +1,52 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
#define MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace util
|
||||
{
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename derived_t, typename base_t>
|
||||
inline derived_t *As(base_t *base_obj)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<derived_t*>(base_obj) != NULL,
|
||||
"invalid object type");
|
||||
return static_cast<derived_t*>(base_obj);
|
||||
}
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename derived_t, typename base_t>
|
||||
inline derived_t *Is(base_t *base_obj)
|
||||
{
|
||||
return dynamic_cast<derived_t*>(base_obj);
|
||||
}
|
||||
|
||||
} // namespace mfem::util
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
@@ -0,0 +1,153 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/scalars.hpp"
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic vector - array of scalars.
|
||||
class PVector : virtual public PArray
|
||||
{
|
||||
protected:
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new vector of the same dynamic type as this
|
||||
vector using the same layout with entries specified by @a buffer_type_id
|
||||
which should be a constant defined by the `value` field in a
|
||||
specialization of the template class mfem::ScalarId.
|
||||
|
||||
Returns NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this vector is copied to the new
|
||||
vector; otherwise, the new vector remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the vector data of the newly created
|
||||
object (in @a *buffer), if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const = 0;
|
||||
|
||||
/** @brief Compute and return the dot product of @a *this and @a x. In the
|
||||
case of an MPI-parallel vector, the result must be the MPI-global dot
|
||||
product. */
|
||||
/** Both vectors must have the same dynamic type and layout. */
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const = 0;
|
||||
|
||||
// TODO: add reduction operations: min, max, sum
|
||||
|
||||
/// Perform the operation @a *this = @a a @a x + @a b @a y.
|
||||
/** Rules:
|
||||
- the dynamic type of both @a x and @a y is the same as that of @a *this
|
||||
- if @a a == 0, neither @a x nor its data are accessed
|
||||
- if @a b == 0, neither @a y nor its data are accessed
|
||||
- @a x's data is never the same as @a y's data, unless @a a == 0, or
|
||||
@a b == 0
|
||||
- @a x's data or @a y's data may be the same as the data of @a *this
|
||||
- all accessed vectors, @a x, @a y, and @a *this have the same layout. */
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id) = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
/** @brief Create a PVector. */
|
||||
/** The @a layout must be valid in the sense that layout != NULL and
|
||||
layout->HasEngine() == true. */
|
||||
PVector(PLayout &p_layout)
|
||||
: PArray(p_layout) { }
|
||||
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
// TODO: Asynchronous execution interface ...
|
||||
|
||||
// TODO: Multi-vector interface ...
|
||||
|
||||
|
||||
/**
|
||||
@name Public virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new vector of the same dynamic type as this
|
||||
vector using the same layout with entries of type @a scalar_t.
|
||||
|
||||
If @a copy_data is true, the contents of this vector is copied to the new
|
||||
vector; otherwise, the new vector remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the vector data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
template <typename scalar_t>
|
||||
DVector Clone(bool copy_data, scalar_t **buffer) const
|
||||
{
|
||||
return DVector(DoVectorClone(copy_data, (void**)buffer,
|
||||
ScalarId<scalar_t>::value));
|
||||
}
|
||||
|
||||
/** @brief Compute and return the dot product of @a *this and @a x. In the
|
||||
case of an MPI-parallel vector, the result must be the MPI-global dot
|
||||
product. */
|
||||
/** Both vectors must have the same dynamic type and layout. */
|
||||
template <typename scalar_t>
|
||||
scalar_t DotProduct(const PVector &x) const
|
||||
{
|
||||
scalar_t result;
|
||||
DoDotProduct(x, &result, ScalarId<scalar_t>::value);
|
||||
return result;
|
||||
}
|
||||
|
||||
// TODO: add reduction operations: min, max, sum
|
||||
|
||||
/// Perform the operation @a *this = @a a @a x + @a b @a y.
|
||||
/** Rules:
|
||||
- the dynamic type of both @a x and @a y is the same as that of @a *this
|
||||
- if @a a == 0, neither @a x nor its data are accessed
|
||||
- if @a b == 0, neither @a y nor its data are accessed
|
||||
- @a x's data is never the same as @a y's data, unless @a a == 0, or
|
||||
@a b == 0
|
||||
- @a x's data or @a y's data may be the same as the data of @a *this
|
||||
- all accessed vectors, @a x, @a y, and @a *this have the same layout. */
|
||||
template <typename scalar_t>
|
||||
void Axpby(const scalar_t &a, const PVector &x,
|
||||
const scalar_t &b, const PVector &y)
|
||||
{ if (Size()) { DoAxpby(&a, x, &b, y, ScalarId<scalar_t>::value); } }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
@@ -0,0 +1,66 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
ELEMENT_BATCH : How many elements are in each
|
||||
. computation batch
|
||||
NUM_DOFS_1D : Dofs in the 1D segments
|
||||
NUM_DOFS_2D : Dofs in the 2D faces
|
||||
NUM_DOFS_3D : Dofs in the 3D domain
|
||||
NUM_QUAD_1D : Dofs in the 1D segments
|
||||
NUM_QUAD_2D : Dofs in the 2D faces
|
||||
NUM_QUAD_3D : Dofs in the 3D domain
|
||||
NUM_MAX_1D : max(NUM_QUAD_1D, NUM_DOFS_1D)
|
||||
NUM_QUAD_DOFS_1D: NUM_QUAD_1D * NUM_DOFS_1D
|
||||
COEFF_ARGS : Code that passes required arguments to the kernel
|
||||
COEFF : Code that computes the coefficient
|
||||
================================================
|
||||
|
||||
[MISSING]
|
||||
- Add support to auto-pick @dim and use @idxOrder on stack arrays
|
||||
| double a[2][2];
|
||||
| a[0][1]; <-- regular index
|
||||
| a(0,1); <-- uses @idxOrder a[0][1] or a[1][0]
|
||||
- Add support for @idxOrder to change indexing order after allocation
|
||||
| double a[2][2] @idxOrder(0,1);
|
||||
| a(0,1) -> a[1][0]
|
||||
| @set(a, idxOrder(1,0));
|
||||
| a(0,1) -> a[0][1]
|
||||
- Add support to iterate over loop depending on mode
|
||||
| for(i; @inner) {
|
||||
| for(0 < j < N) {} <-- ++j or j += block?
|
||||
| }
|
||||
*/
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://diffusion/tensor/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://diffusion/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://diffusion/tensor/cpu.okl"
|
||||
# endif
|
||||
#else
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://diffusion/simplex/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://diffusion/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://diffusion/simplex/cpu.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,66 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
ELEMENT_BATCH : How many elements are in each
|
||||
. computation batch
|
||||
NUM_DOFS_1D : Dofs in the 1D segments
|
||||
NUM_DOFS_2D : Dofs in the 2D faces
|
||||
NUM_DOFS_3D : Dofs in the 3D domain
|
||||
NUM_QUAD_1D : Dofs in the 1D segments
|
||||
NUM_QUAD_2D : Dofs in the 2D faces
|
||||
NUM_QUAD_3D : Dofs in the 3D domain
|
||||
NUM_MAX_1D : max(NUM_QUAD_1D, NUM_DOFS_1D)
|
||||
NUM_QUAD_DOFS_1D: NUM_QUAD_1D * NUM_DOFS_1D
|
||||
COEFF_ARGS : Code that passes required arguments to the kernel
|
||||
COEFF : Code that computes the coefficient
|
||||
================================================
|
||||
|
||||
[MISSING]
|
||||
- Add support to auto-pick @dim and use @idxOrder on stack arrays
|
||||
| double a[2][2];
|
||||
| a[0][1]; <-- regular index
|
||||
| a(0,1); <-- uses @idxOrder a[0][1] or a[1][0]
|
||||
- Add support for @idxOrder to change indexing order after allocation
|
||||
| double a[2][2] @idxOrder(0,1);
|
||||
| a(0,1) -> a[1][0]
|
||||
| @set(a, idxOrder(1,0));
|
||||
| a(0,1) -> a[0][1]
|
||||
- Add support to iterate over loop depending on mode
|
||||
| for(i; @inner) {
|
||||
| for(0 < j < N) {} <-- ++j or j += block?
|
||||
| }
|
||||
*/
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://mass/tensor/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://mass/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://mass/tensor/cpu.okl"
|
||||
# endif
|
||||
#else
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://mass/simplex/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://mass/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://mass/simplex/cpu.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,38 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
ELEMENT_BATCH : How many elements are in each
|
||||
. computation batch
|
||||
NUM_DOFS_1D : Dofs in the 1D segments
|
||||
NUM_DOFS_2D : Dofs in the 2D faces
|
||||
NUM_DOFS_3D : Dofs in the 3D domain
|
||||
NUM_QUAD_1D : Dofs in the 1D segments
|
||||
NUM_QUAD_2D : Dofs in the 2D faces
|
||||
NUM_QUAD_3D : Dofs in the 3D domain
|
||||
NUM_MAX_1D : max(NUM_QUAD_1D, NUM_DOFS_1D)
|
||||
NUM_QUAD_DOFS_1D: NUM_QUAD_1D * NUM_DOFS_1D
|
||||
CONST_COEFF : If the coefficient is constant, pass it
|
||||
. as a define
|
||||
================================================
|
||||
|
||||
[MISSING]
|
||||
See kernels/DiffusionIntegrator.okl
|
||||
*/
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# ifndef OCCA_USING_GPU
|
||||
# include "mfem-occa://vmass/tensor/cpu.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,121 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
PArray *Array::DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
Array *new_array = new Array(OccaLayout(), item_size);
|
||||
if (copy_data)
|
||||
{
|
||||
new_array->slice.copyFrom(slice);
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_array->GetBuffer();
|
||||
}
|
||||
return new_array;
|
||||
}
|
||||
|
||||
int Array::DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&new_layout) != NULL,
|
||||
"new_layout is not an OCCA Layout");
|
||||
Layout *lt = static_cast<Layout *>(&new_layout);
|
||||
int err = OccaResize(lt, item_size);
|
||||
if (!err && buffer)
|
||||
{
|
||||
*buffer = GetBuffer();
|
||||
}
|
||||
return err;
|
||||
}
|
||||
|
||||
void *Array::DoPullData(void *buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (!slice.getDevice().hasSeparateMemorySpace())
|
||||
{
|
||||
return slice.ptr();
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
slice.copyTo(buffer);
|
||||
}
|
||||
return buffer;
|
||||
}
|
||||
|
||||
void Array::DoFill(const void *value_ptr, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
switch (item_size)
|
||||
{
|
||||
case sizeof(int8_t):
|
||||
OccaFill(*(const int8_t *)value_ptr);
|
||||
break;
|
||||
case sizeof(int16_t):
|
||||
OccaFill(*(const int16_t *)value_ptr);
|
||||
break;
|
||||
case sizeof(int32_t):
|
||||
OccaFill(*(const int32_t *)value_ptr);
|
||||
break;
|
||||
// case sizeof(int64_t):
|
||||
// OccaFill(*(const int64_t *)value_ptr);
|
||||
// break;
|
||||
case sizeof(double):
|
||||
OccaFill(*(const double *)value_ptr);
|
||||
break;
|
||||
// case sizeof(::occa::double2):
|
||||
// OccaFill(*(const ::occa::double2 *)value_ptr);
|
||||
// break;
|
||||
default:
|
||||
MFEM_ABORT("item_size = " << item_size << " is not supported");
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoPushData(const void *src_buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (slice.getDevice().hasSeparateMemorySpace() || slice.ptr() != src_buffer)
|
||||
{
|
||||
slice.copyFrom(src_buffer);
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoAssign(const PArray &src, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
// Note: static_cast can not be used here since PArray is a virtual base
|
||||
// class.
|
||||
const Array *source = dynamic_cast<const Array *>(&src);
|
||||
MFEM_ASSERT(source != NULL, "invalid source Array type");
|
||||
OccaAssign(*source);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,175 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "layout.hpp"
|
||||
#include "../base/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Array : public virtual PArray
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
// Always true: Size()*item_size == slice.size() <= data.size()
|
||||
mutable ::occa::memory data, slice;
|
||||
|
||||
//
|
||||
// Virtual interface
|
||||
//
|
||||
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const;
|
||||
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size);
|
||||
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size);
|
||||
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size);
|
||||
|
||||
//
|
||||
// Auxiliary methods
|
||||
//
|
||||
|
||||
inline void *GetBuffer() const;
|
||||
|
||||
public:
|
||||
Array(const Engine &e)
|
||||
: PArray(*(new Layout(e, 0))),
|
||||
data(e.Alloc(0)),
|
||||
slice(data)
|
||||
{ }
|
||||
|
||||
Array(Layout <, std::size_t item_size)
|
||||
: PArray(lt),
|
||||
data(lt.OccaEngine().Alloc(lt.Size()*item_size)),
|
||||
slice(data)
|
||||
{ }
|
||||
|
||||
virtual ~Array() { }
|
||||
|
||||
inline void MakeRef(Array &master);
|
||||
|
||||
Layout &OccaLayout() const { return layout->As<Layout>(); }
|
||||
|
||||
const Engine &OccaEngine() const { return OccaLayout().OccaEngine(); }
|
||||
|
||||
::occa::memory &OccaMem() { return slice; }
|
||||
const ::occa::memory &OccaMem() const { return slice; }
|
||||
|
||||
inline int OccaResize(Layout *lt, std::size_t item_size);
|
||||
|
||||
inline int OccaResize(std::size_t new_size, std::size_t item_size);
|
||||
|
||||
template <typename T>
|
||||
inline void OccaFill(const T val);
|
||||
|
||||
inline void OccaAssign(const Array &src);
|
||||
|
||||
inline void OccaPush(const void *src);
|
||||
};
|
||||
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
inline void *Array::GetBuffer() const
|
||||
{
|
||||
if (!slice.getDevice().hasSeparateMemorySpace())
|
||||
{
|
||||
return slice.ptr();
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
|
||||
inline int Array::OccaResize(Layout *lt, std::size_t item_size)
|
||||
{
|
||||
layout.Reset(lt); // Reset() checks if the pointer is the same
|
||||
const std::size_t new_bytes = lt->Size()*item_size;
|
||||
if (data.size() < new_bytes ||
|
||||
data.getDevice() != lt->OccaEngine().GetDevice())
|
||||
{
|
||||
data = lt->OccaEngine().Alloc(new_bytes);
|
||||
slice = data;
|
||||
// If memory allocation fails - an exception is thrown.
|
||||
}
|
||||
else if (slice.size() != new_bytes)
|
||||
{
|
||||
slice = data.slice(0, new_bytes);
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
inline void Array::MakeRef(Array &master)
|
||||
{
|
||||
layout = master.layout;
|
||||
data = master.data;
|
||||
slice = master.slice;
|
||||
}
|
||||
|
||||
inline int Array::OccaResize(std::size_t new_size, std::size_t item_size)
|
||||
{
|
||||
Layout &ol = OccaLayout();
|
||||
ol.OccaResize(new_size);
|
||||
return OccaResize(&ol, item_size);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Array::OccaFill(const T val)
|
||||
{
|
||||
::occa::linalg::operator_eq<T>(slice, val);
|
||||
}
|
||||
|
||||
inline void Array::OccaAssign(const Array &src)
|
||||
{
|
||||
if (slice != src.slice && slice.size() != 0)
|
||||
{
|
||||
MFEM_ASSERT(slice.size() == src.slice.size(), "");
|
||||
slice.copyFrom(src.slice);
|
||||
}
|
||||
}
|
||||
|
||||
inline void Array::OccaPush(const void *src)
|
||||
{
|
||||
if (slice.size() != 0)
|
||||
{
|
||||
slice.copyFrom(src);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
@@ -0,0 +1,47 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
bool Backend::Supports(const std::string &engine_spec) const
|
||||
{
|
||||
// TODO: check if 'engine_spec' is valid OCCA string.
|
||||
return true;
|
||||
}
|
||||
|
||||
mfem::Engine *Create(const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(comm, engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,49 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
// Only the Backend and Engine classes should be exposed through "backend.hpp"
|
||||
#include "../base/backend.hpp"
|
||||
#include "engine.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Backend : public mfem::Backend
|
||||
{
|
||||
public:
|
||||
virtual ~Backend();
|
||||
|
||||
virtual bool Supports(const std::string &engine_spec) const;
|
||||
|
||||
virtual mfem::Engine *Create(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
virtual mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
@@ -0,0 +1,538 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
OccaBilinearForm::OccaBilinearForm(FiniteElementSpace *ofespace_) :
|
||||
Operator(ofespace_->OccaVLayout()),
|
||||
localX(ofespace_->OccaEVLayout()),
|
||||
localY(ofespace_->OccaEVLayout())
|
||||
{
|
||||
Init(ofespace_->OccaEngine(), ofespace_, ofespace_);
|
||||
}
|
||||
|
||||
OccaBilinearForm::OccaBilinearForm(FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_) :
|
||||
Operator(otrialFESpace_->OccaVLayout(),
|
||||
otestFESpace_->OccaVLayout()),
|
||||
localX(otrialFESpace_->OccaEVLayout()),
|
||||
localY(otestFESpace_->OccaEVLayout())
|
||||
{
|
||||
Init(otrialFESpace_->OccaEngine(), otrialFESpace_, otestFESpace_);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::Init(const Engine &e,
|
||||
FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_)
|
||||
{
|
||||
engine.Reset(&e);
|
||||
|
||||
otrialFESpace = otrialFESpace_;
|
||||
trialFESpace = otrialFESpace_->GetFESpace();
|
||||
|
||||
otestFESpace = otestFESpace_;
|
||||
testFESpace = otestFESpace_->GetFESpace();
|
||||
|
||||
mesh = trialFESpace->GetMesh();
|
||||
|
||||
const int elements = GetNE();
|
||||
|
||||
const int trialVDim = trialFESpace->GetVDim();
|
||||
|
||||
const int trialLocalDofs = otrialFESpace->GetLocalDofs();
|
||||
const int testLocalDofs = otestFESpace->GetLocalDofs();
|
||||
|
||||
// First-touch policy when running with OpenMP
|
||||
if (GetDevice().mode() == "OpenMP")
|
||||
{
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
::occa::kernel initLocalKernel =
|
||||
GetDevice().buildKernel(okl_path + "utils.okl",
|
||||
"InitLocalVector");
|
||||
|
||||
const std::size_t sd = sizeof(double);
|
||||
const uint64_t trialEntries = sd * (elements * trialLocalDofs);
|
||||
const uint64_t testEntries = sd * (elements * testLocalDofs);
|
||||
for (int v = 0; v < trialVDim; ++v)
|
||||
{
|
||||
const uint64_t trialOffset = v * trialEntries;
|
||||
const uint64_t testOffset = v * testEntries;
|
||||
|
||||
initLocalKernel(elements, trialLocalDofs,
|
||||
localX.OccaMem().slice(trialOffset, trialEntries));
|
||||
initLocalKernel(elements, testLocalDofs,
|
||||
localY.OccaMem().slice(testOffset, testEntries));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int OccaBilinearForm::BaseGeom() const
|
||||
{
|
||||
return mesh->GetElementBaseGeometry();
|
||||
}
|
||||
|
||||
int OccaBilinearForm::GetDim() const
|
||||
{
|
||||
return mesh->Dimension();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetNE() const
|
||||
{
|
||||
return mesh->GetNE();
|
||||
}
|
||||
|
||||
Mesh& OccaBilinearForm::GetMesh() const
|
||||
{
|
||||
return *mesh;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaBilinearForm::GetTrialOccaFESpace() const
|
||||
{
|
||||
return *otrialFESpace;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaBilinearForm::GetTestOccaFESpace() const
|
||||
{
|
||||
return *otestFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaBilinearForm::GetTrialFESpace() const
|
||||
{
|
||||
return *trialFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaBilinearForm::GetTestFESpace() const
|
||||
{
|
||||
return *testFESpace;
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTrialNDofs() const
|
||||
{
|
||||
return trialFESpace->GetNDofs();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTestNDofs() const
|
||||
{
|
||||
return testFESpace->GetNDofs();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTrialVDim() const
|
||||
{
|
||||
return trialFESpace->GetVDim();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTestVDim() const
|
||||
{
|
||||
return testFESpace->GetVDim();
|
||||
}
|
||||
|
||||
const FiniteElement& OccaBilinearForm::GetTrialFE(const int i) const
|
||||
{
|
||||
return *(trialFESpace->GetFE(i));
|
||||
}
|
||||
|
||||
const FiniteElement& OccaBilinearForm::GetTestFE(const int i) const
|
||||
{
|
||||
return *(testFESpace->GetFE(i));
|
||||
}
|
||||
|
||||
// Adds new Domain Integrator.
|
||||
void OccaBilinearForm::AddDomainIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, DomainIntegrator);
|
||||
}
|
||||
|
||||
// Adds new Boundary Integrator.
|
||||
void OccaBilinearForm::AddBoundaryIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, BoundaryIntegrator);
|
||||
}
|
||||
|
||||
// Adds new interior Face Integrator.
|
||||
void OccaBilinearForm::AddInteriorFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, InteriorFaceIntegrator);
|
||||
}
|
||||
|
||||
// Adds new boundary Face Integrator.
|
||||
void OccaBilinearForm::AddBoundaryFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, BoundaryFaceIntegrator);
|
||||
}
|
||||
|
||||
// Adds Integrator based on OccaIntegratorType
|
||||
void OccaBilinearForm::AddIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props,
|
||||
const OccaIntegratorType itype)
|
||||
{
|
||||
if (integrator == NULL)
|
||||
{
|
||||
std::stringstream error_ss;
|
||||
error_ss << "OccaBilinearForm::";
|
||||
switch (itype)
|
||||
{
|
||||
case DomainIntegrator : error_ss << "AddDomainIntegrator"; break;
|
||||
case BoundaryIntegrator : error_ss << "AddBoundaryIntegrator"; break;
|
||||
case InteriorFaceIntegrator: error_ss << "AddInteriorFaceIntegrator"; break;
|
||||
case BoundaryFaceIntegrator: error_ss << "AddBoundaryFaceIntegrator"; break;
|
||||
}
|
||||
error_ss << " (...):\n"
|
||||
<< " Integrator is NULL";
|
||||
const std::string error = error_ss.str();
|
||||
mfem_error(error.c_str());
|
||||
}
|
||||
integrator->SetupIntegrator(*this, baseKernelProps + props, itype);
|
||||
integrators.push_back(integrator);
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTrialProlongation() const
|
||||
{
|
||||
return otrialFESpace->GetProlongationOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTestProlongation() const
|
||||
{
|
||||
return otestFESpace->GetProlongationOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTrialRestriction() const
|
||||
{
|
||||
return otrialFESpace->GetRestrictionOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTestRestriction() const
|
||||
{
|
||||
return otestFESpace->GetRestrictionOperator();
|
||||
}
|
||||
|
||||
void OccaBilinearForm::Assemble()
|
||||
{
|
||||
// [MISSING] Find geometric information that is needed by intergrators
|
||||
// to share between integrators.
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->Assemble();
|
||||
}
|
||||
}
|
||||
|
||||
void OccaBilinearForm::FormLinearSystem(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *&Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormOperator(constraintList, Aout);
|
||||
InitRHS(constraintList, x, b, Aout, X, B, copy_interior);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::FormOperator(const mfem::Array<int> &constraintList,
|
||||
mfem::Operator *&Aout)
|
||||
{
|
||||
const mfem::Operator *trialP = GetTrialProlongation();
|
||||
const mfem::Operator *testP = GetTestProlongation();
|
||||
mfem::Operator *rap = this;
|
||||
|
||||
if (trialP)
|
||||
{
|
||||
rap = new RAPOperator(*testP, *this, *trialP);
|
||||
}
|
||||
|
||||
Aout = new OccaConstrainedOperator(rap, constraintList,
|
||||
rap != this);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::InitRHS(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
// FIXME: move these kernels to the Backend?
|
||||
static ::occa::kernelBuilder get_subvector_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_get_subvector",
|
||||
|
||||
"const int dof_i = v2[i];"
|
||||
"v0[i] = dof_i >= 0 ? v1[dof_i] : -v1[-dof_i - 1];",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
static ::occa::kernelBuilder set_subvector_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_set_subvector",
|
||||
"const int dof_i = v2[i];"
|
||||
"if (dof_i >= 0) { v0[dof_i] = v1[i]; }"
|
||||
"else { v0[-dof_i - 1] = -v1[i]; }",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
const mfem::Operator *P = GetTrialProlongation();
|
||||
const mfem::Operator *R = GetTrialRestriction();
|
||||
|
||||
if (P)
|
||||
{
|
||||
// Variational restriction with P
|
||||
B.Resize(P->InLayout());
|
||||
P->MultTranspose(b, B);
|
||||
X.Resize(R->OutLayout());
|
||||
R->Mult(x, X);
|
||||
}
|
||||
else
|
||||
{
|
||||
// rap, X and B point to the same data as this, x and b
|
||||
X.MakeRef(x);
|
||||
B.MakeRef(b);
|
||||
}
|
||||
|
||||
if (!copy_interior && constraintList.Size() > 0)
|
||||
{
|
||||
::occa::kernel get_subvector_kernel =
|
||||
get_subvector_builder.build(GetDevice());
|
||||
::occa::kernel set_subvector_kernel =
|
||||
set_subvector_builder.build(GetDevice());
|
||||
|
||||
const Array &constrList = constraintList.Get_PArray()->As<Array>();
|
||||
Vector subvec(constrList.OccaLayout());
|
||||
|
||||
get_subvector_kernel(constraintList.Size(),
|
||||
subvec.OccaMem(),
|
||||
X.Get_PVector()->As<Vector>().OccaMem(),
|
||||
constrList.OccaMem());
|
||||
|
||||
X.Fill(0.0);
|
||||
|
||||
set_subvector_kernel(constraintList.Size(),
|
||||
X.Get_PVector()->As<Vector>().OccaMem(),
|
||||
subvec.OccaMem(),
|
||||
constrList.OccaMem());
|
||||
}
|
||||
|
||||
// FIXME: add case for HypreParMatrix here
|
||||
OccaConstrainedOperator *cA = dynamic_cast<OccaConstrainedOperator*>(A);
|
||||
if (cA)
|
||||
{
|
||||
cA->EliminateRHS(X.Get_PVector()->As<Vector>(),
|
||||
B.Get_PVector()->As<Vector>());
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("OccaBilinearForm::InitRHS expects an OccaConstrainedOperator");
|
||||
}
|
||||
}
|
||||
|
||||
// Matrix vector multiplication.
|
||||
void OccaBilinearForm::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
otrialFESpace->GlobalToLocal(x, localX);
|
||||
localY.OccaFill<double>(0.0);
|
||||
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->MultAdd(localX, localY);
|
||||
}
|
||||
|
||||
otestFESpace->LocalToGlobal(localY, y);
|
||||
}
|
||||
|
||||
// Matrix transpose vector multiplication.
|
||||
void OccaBilinearForm::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
otestFESpace->GlobalToLocal(x, localX);
|
||||
localY.OccaFill<double>(0.0);
|
||||
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->MultTransposeAdd(localX, localY);
|
||||
}
|
||||
|
||||
otrialFESpace->LocalToGlobal(localY, y);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::OccaRecoverFEMSolution(const mfem::Vector &X,
|
||||
const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
const mfem::Operator *P = this->GetTrialProlongation();
|
||||
if (P)
|
||||
{
|
||||
// Apply conforming prolongation
|
||||
x.Resize(P->OutLayout());
|
||||
P->Mult(X, x);
|
||||
}
|
||||
// Otherwise X and x point to the same data
|
||||
}
|
||||
|
||||
// Frees memory bilinear form.
|
||||
OccaBilinearForm::~OccaBilinearForm()
|
||||
{
|
||||
// Make sure all integrators free their data
|
||||
IntegratorVector::iterator it = integrators.begin();
|
||||
while (it != integrators.end())
|
||||
{
|
||||
delete *it;
|
||||
++it;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void BilinearForm::InitOccaBilinearForm()
|
||||
{
|
||||
// Init 'obform' using 'bform'
|
||||
MFEM_ASSERT(bform != NULL, "");
|
||||
MFEM_ASSERT(obform == NULL, "");
|
||||
|
||||
FiniteElementSpace &ofes =
|
||||
bform->FESpace()->Get_PFESpace()->As<FiniteElementSpace>();
|
||||
obform = new OccaBilinearForm(&ofes);
|
||||
|
||||
// Transfer domain integrators
|
||||
mfem::Array<mfem::BilinearFormIntegrator*> &dbfi = *bform->GetDBFI();
|
||||
for (int i = 0; i < dbfi.Size(); i++)
|
||||
{
|
||||
std::string integ_name(dbfi[i]->Name());
|
||||
Coefficient *scal_coeff = dbfi[i]->GetScalarCoefficient();
|
||||
ConstantCoefficient *const_coeff =
|
||||
dynamic_cast<ConstantCoefficient*>(scal_coeff);
|
||||
GridFunctionCoefficient *gridfunc_coeff =
|
||||
dynamic_cast<GridFunctionCoefficient*>(scal_coeff);
|
||||
// TODO: other types of coefficients ...
|
||||
|
||||
OccaCoefficient *ocoeff = NULL;
|
||||
if (const_coeff)
|
||||
{
|
||||
ocoeff = new OccaCoefficient(obform->OccaEngine(),
|
||||
const_coeff->constant);
|
||||
}
|
||||
else if (gridfunc_coeff)
|
||||
{
|
||||
ocoeff = new OccaCoefficient(obform->OccaEngine(),
|
||||
*gridfunc_coeff->GetGridFunction(), true);
|
||||
}
|
||||
else if (!scal_coeff)
|
||||
{
|
||||
ocoeff = new OccaCoefficient(obform->OccaEngine(), 1.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Coefficient type not supported");
|
||||
}
|
||||
|
||||
OccaIntegrator *ointeg = NULL;
|
||||
if (integ_name == "(undefined)")
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator does not define Name()");
|
||||
}
|
||||
else if (integ_name == "mass")
|
||||
{
|
||||
ointeg = new OccaMassIntegrator(*ocoeff);
|
||||
}
|
||||
else if (integ_name == "diffusion")
|
||||
{
|
||||
ointeg = new OccaDiffusionIntegrator(*ocoeff);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator [Name() = " << integ_name
|
||||
<< "] is not supported");
|
||||
}
|
||||
|
||||
// NOTE: The integrators copy ocoeff, so it can be deleted here so there
|
||||
// is no memory leak.
|
||||
delete ocoeff;
|
||||
|
||||
const mfem::IntegrationRule *ir = dbfi[i]->GetIntRule();
|
||||
if (ir) { ointeg->SetIntegrationRule(*ir); }
|
||||
|
||||
obform->AddDomainIntegrator(ointeg);
|
||||
}
|
||||
|
||||
// TODO: other types of integrators ...
|
||||
}
|
||||
|
||||
bool BilinearForm::Assemble()
|
||||
{
|
||||
if (obform == NULL) { InitOccaBilinearForm(); }
|
||||
|
||||
obform->Assemble();
|
||||
|
||||
return true; // --> host assembly is not needed
|
||||
}
|
||||
|
||||
void BilinearForm::FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A)
|
||||
{
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
mfem::Operator *Aout = NULL;
|
||||
obform->FormOperator(ess_tdof_list, Aout);
|
||||
A.Reset(Aout);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported, type = " << A.Type());
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormSystemMatrix(ess_tdof_list, A);
|
||||
obform->InitRHS(ess_tdof_list, x, b, A.Ptr(), X, B, copy_interior);
|
||||
}
|
||||
|
||||
void BilinearForm::RecoverFEMSolution(const mfem::Vector &X,
|
||||
const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
obform->OccaRecoverFEMSolution(X, b, x);
|
||||
}
|
||||
|
||||
BilinearForm::~BilinearForm()
|
||||
{
|
||||
delete obform;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,213 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
enum OccaIntegratorType
|
||||
{
|
||||
DomainIntegrator = 0,
|
||||
BoundaryIntegrator = 1,
|
||||
InteriorFaceIntegrator = 2,
|
||||
BoundaryFaceIntegrator = 3
|
||||
};
|
||||
|
||||
class OccaIntegrator;
|
||||
|
||||
|
||||
/** Class for bilinear form - "Matrix" with associated FE space and
|
||||
BLFIntegrators. */
|
||||
class OccaBilinearForm : public Operator
|
||||
{
|
||||
friend class OccaIntegrator;
|
||||
|
||||
protected:
|
||||
typedef std::vector<OccaIntegrator*> IntegratorVector;
|
||||
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
// State information
|
||||
mutable mfem::Mesh *mesh;
|
||||
|
||||
mutable FiniteElementSpace *otrialFESpace;
|
||||
mutable mfem::FiniteElementSpace *trialFESpace;
|
||||
|
||||
mutable FiniteElementSpace *otestFESpace;
|
||||
mutable mfem::FiniteElementSpace *testFESpace;
|
||||
|
||||
IntegratorVector integrators;
|
||||
|
||||
// Device data
|
||||
::occa::properties baseKernelProps;
|
||||
|
||||
// The input and output vectors are mapped to local nodes for efficient
|
||||
// operations. In other words, they are E-vectors.
|
||||
// The size is: (number of elements) * (nodes in element) * (vector dim)
|
||||
mutable Vector localX, localY;
|
||||
|
||||
public:
|
||||
OccaBilinearForm(FiniteElementSpace *ofespace_);
|
||||
|
||||
OccaBilinearForm(FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_);
|
||||
|
||||
void Init(const Engine &e,
|
||||
FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_);
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
// Useful mesh Information
|
||||
int BaseGeom() const;
|
||||
int GetDim() const;
|
||||
int64_t GetNE() const;
|
||||
|
||||
mfem::Mesh& GetMesh() const;
|
||||
|
||||
FiniteElementSpace& GetTrialOccaFESpace() const;
|
||||
FiniteElementSpace& GetTestOccaFESpace() const;
|
||||
|
||||
mfem::FiniteElementSpace& GetTrialFESpace() const;
|
||||
mfem::FiniteElementSpace& GetTestFESpace() const;
|
||||
|
||||
// Useful FE information
|
||||
int64_t GetTrialNDofs() const;
|
||||
int64_t GetTestNDofs() const;
|
||||
|
||||
int64_t GetTrialVDim() const;
|
||||
int64_t GetTestVDim() const;
|
||||
|
||||
const mfem::FiniteElement& GetTrialFE(const int i) const;
|
||||
const mfem::FiniteElement& GetTestFE(const int i) const;
|
||||
|
||||
// Adds new Domain Integrator.
|
||||
void AddDomainIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new Boundary Integrator.
|
||||
void AddBoundaryIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new interior Face Integrator.
|
||||
void AddInteriorFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new boundary Face Integrator.
|
||||
void AddBoundaryFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds Integrator based on OccaIntegratorType
|
||||
void AddIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props,
|
||||
const OccaIntegratorType itype);
|
||||
|
||||
virtual const mfem::Operator *GetTrialProlongation() const;
|
||||
virtual const mfem::Operator *GetTestProlongation() const;
|
||||
|
||||
virtual const mfem::Operator *GetTrialRestriction() const;
|
||||
virtual const mfem::Operator *GetTestRestriction() const;
|
||||
|
||||
// Assembles the form i.e. sums over all domain/bdr integrators.
|
||||
virtual void Assemble();
|
||||
|
||||
void FormLinearSystem(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *&Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
void FormOperator(const mfem::Array<int> &constraintList,
|
||||
mfem::Operator *&Aout);
|
||||
|
||||
void InitRHS(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
|
||||
void OccaRecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x);
|
||||
|
||||
// Destroys bilinear form.
|
||||
~OccaBilinearForm();
|
||||
};
|
||||
|
||||
|
||||
/// TODO: doxygen
|
||||
class BilinearForm : public mfem::PBilinearForm
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::BilinearForm *bform;
|
||||
OccaBilinearForm *obform;
|
||||
|
||||
// Called from Assemble() if obform is NULL to initialize obform.
|
||||
void InitOccaBilinearForm();
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
BilinearForm(const Engine &e, mfem::BilinearForm &bf)
|
||||
: mfem::PBilinearForm(e, bf), obform(NULL) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~BilinearForm();
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method mfem::BilinearForm::Assemble() of
|
||||
the associated mfem::BilinearForm, #bform.
|
||||
@returns True, if the host assembly should NOT be performed. */
|
||||
virtual bool Assemble();
|
||||
|
||||
virtual void FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A);
|
||||
|
||||
virtual void FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior);
|
||||
|
||||
virtual void RecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
@@ -0,0 +1,954 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
std::map<std::string, OccaDofQuadMaps> OccaDofQuadMaps::AllDofQuadMaps;
|
||||
|
||||
OccaGeometry OccaGeometry::Get(::occa::device device,
|
||||
FiniteElementSpace &ofespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const int flags)
|
||||
{
|
||||
OccaGeometry geom;
|
||||
|
||||
mfem::Mesh &mesh = *(ofespace.GetMesh());
|
||||
if (!mesh.GetNodes())
|
||||
{
|
||||
mesh.SetCurvature(1, false, -1, mfem::Ordering::byVDIM);
|
||||
}
|
||||
mfem::GridFunction &nodes = *(mesh.GetNodes());
|
||||
const mfem::FiniteElementSpace &fespace = *(nodes.FESpace());
|
||||
const mfem::FiniteElement &fe = *(fespace.GetFE(0));
|
||||
|
||||
const int dims = fe.GetDim();
|
||||
const int elements = fespace.GetNE();
|
||||
const int numDofs = fe.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
MFEM_ASSERT(dims == mesh.SpaceDimension(), "");
|
||||
|
||||
geom.meshNodes.allocate(device,
|
||||
dims, numDofs, elements);
|
||||
|
||||
const mfem::Table &e2dTable = fespace.GetElementToDofTable();
|
||||
const int *elementMap = e2dTable.GetJ();
|
||||
nodes.Pull();
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int dof = 0; dof < numDofs; ++dof)
|
||||
{
|
||||
const int gid = elementMap[dof + numDofs*e];
|
||||
for (int dim = 0; dim < dims; ++dim)
|
||||
{
|
||||
geom.meshNodes(dim, dof, e) = nodes[fespace.DofToVDof(gid,dim)];
|
||||
}
|
||||
}
|
||||
}
|
||||
geom.meshNodes.keepInDevice();
|
||||
|
||||
if (flags & Jacobian)
|
||||
{
|
||||
geom.J.allocate(device,
|
||||
dims, dims, numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.J.allocate(device, 1);
|
||||
}
|
||||
if (flags & JacobianInv)
|
||||
{
|
||||
geom.invJ.allocate(device,
|
||||
dims, dims, numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.invJ.allocate(device, 1);
|
||||
}
|
||||
if (flags & JacobianDet)
|
||||
{
|
||||
geom.detJ.allocate(device,
|
||||
numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.detJ.allocate(device, 1);
|
||||
}
|
||||
|
||||
geom.J.stopManaging();
|
||||
geom.invJ.stopManaging();
|
||||
geom.detJ.stopManaging();
|
||||
|
||||
OccaDofQuadMaps &maps = OccaDofQuadMaps::GetSimplexMaps(device, fe, ir);
|
||||
|
||||
::occa::properties props;
|
||||
props["defines/NUM_DOFS"] = numDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
props["defines/STORE_JACOBIAN"] = (flags & Jacobian);
|
||||
props["defines/STORE_JACOBIAN_INV"] = (flags & JacobianInv);
|
||||
props["defines/STORE_JACOBIAN_DET"] = (flags & JacobianDet);
|
||||
|
||||
const std::string &okl_path = ofespace.OccaEngine().GetOklPath();
|
||||
::occa::kernel init = device.buildKernel(okl_path + "geometry.okl",
|
||||
stringWithDim("InitGeometryInfo",
|
||||
fe.GetDim()),
|
||||
props);
|
||||
init(elements,
|
||||
maps.dofToQuadD,
|
||||
geom.meshNodes,
|
||||
geom.J, geom.invJ, geom.detJ);
|
||||
|
||||
return geom;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps::OccaDofQuadMaps() :
|
||||
hash() {}
|
||||
|
||||
OccaDofQuadMaps::OccaDofQuadMaps(const OccaDofQuadMaps &maps)
|
||||
{
|
||||
*this = maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::operator = (const OccaDofQuadMaps &maps)
|
||||
{
|
||||
hash = maps.hash;
|
||||
dofToQuad = maps.dofToQuad;
|
||||
dofToQuadD = maps.dofToQuadD;
|
||||
quadToDof = maps.quadToDof;
|
||||
quadToDofD = maps.quadToDofD;
|
||||
quadWeights = maps.quadWeights;
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device,
|
||||
*fespace.GetFE(0),
|
||||
*fespace.GetFE(0),
|
||||
ir,
|
||||
transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device, fe, fe, ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const FiniteElementSpace &trialFESpace,
|
||||
const FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device,
|
||||
*trialFESpace.GetFE(0),
|
||||
*testFESpace.GetFE(0),
|
||||
ir,
|
||||
transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return (dynamic_cast<const mfem::TensorBasisElement*>(&trialFE)
|
||||
? GetTensorMaps(device, trialFE, testFE, ir, transpose)
|
||||
: GetSimplexMaps(device, trialFE, testFE, ir, transpose));
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return GetTensorMaps(device,
|
||||
fe, fe,
|
||||
ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const mfem::TensorBasisElement &trialTFE =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(trialFE);
|
||||
const mfem::TensorBasisElement &testTFE =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(testFE);
|
||||
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "Tensor"
|
||||
<< "O1:" << trialFE.GetOrder()
|
||||
<< "O2:" << testFE.GetOrder()
|
||||
<< "BT1:" << trialTFE.GetBasisType()
|
||||
<< "BT2:" << testTFE.GetBasisType()
|
||||
<< "Q:" << ir.GetNPoints();
|
||||
std::string hash = ss.str();
|
||||
|
||||
// If we've already made the dof-quad maps, reuse them
|
||||
OccaDofQuadMaps &maps = AllDofQuadMaps[hash];
|
||||
if (!maps.hash.size())
|
||||
{
|
||||
// Create the dof-quad maps
|
||||
maps.hash = hash;
|
||||
|
||||
OccaDofQuadMaps trialMaps = GetD2QTensorMaps(device, trialFE, ir);
|
||||
OccaDofQuadMaps testMaps = GetD2QTensorMaps(device, testFE , ir, true);
|
||||
|
||||
maps.dofToQuad = trialMaps.dofToQuad;
|
||||
maps.dofToQuadD = trialMaps.dofToQuadD;
|
||||
maps.quadToDof = testMaps.dofToQuad;
|
||||
maps.quadToDofD = testMaps.dofToQuadD;
|
||||
maps.quadWeights = testMaps.quadWeights;
|
||||
}
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps OccaDofQuadMaps::GetD2QTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const mfem::TensorBasisElement &tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(fe);
|
||||
|
||||
const mfem::Poly_1D::Basis &basis = tfe.GetBasis1D();
|
||||
const int order = fe.GetOrder();
|
||||
// [MISSING] Get 1D dofs
|
||||
const int dofs = order + 1;
|
||||
const int dims = fe.GetDim();
|
||||
|
||||
// Create the dof -> quadrature point map
|
||||
const mfem::IntegrationRule &ir1D =
|
||||
mfem::IntRules.Get(mfem::Geometry::SEGMENT, ir.GetOrder());
|
||||
const int quadPoints = ir1D.GetNPoints();
|
||||
const int quadPoints2D = quadPoints*quadPoints;
|
||||
const int quadPoints3D = quadPoints2D*quadPoints;
|
||||
const int quadPointsND = ((dims == 1) ? quadPoints :
|
||||
((dims == 2) ? quadPoints2D : quadPoints3D));
|
||||
|
||||
OccaDofQuadMaps maps;
|
||||
// Initialize the dof -> quad mapping
|
||||
maps.dofToQuad.allocate(device,
|
||||
quadPoints, dofs);
|
||||
maps.dofToQuadD.allocate(device,
|
||||
quadPoints, dofs);
|
||||
|
||||
double *quadWeights1DData = NULL;
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
maps.dofToQuad.reindex(1,0);
|
||||
maps.dofToQuadD.reindex(1,0);
|
||||
// Initialize quad weights only for transpose
|
||||
maps.quadWeights.allocate(device,
|
||||
quadPointsND);
|
||||
quadWeights1DData = new double[quadPoints];
|
||||
}
|
||||
|
||||
mfem::Vector d2q(dofs);
|
||||
mfem::Vector d2qD(dofs);
|
||||
for (int q = 0; q < quadPoints; ++q)
|
||||
{
|
||||
const mfem::IntegrationPoint &ip = ir1D.IntPoint(q);
|
||||
basis.Eval(ip.x, d2q, d2qD);
|
||||
if (transpose)
|
||||
{
|
||||
quadWeights1DData[q] = ip.weight;
|
||||
}
|
||||
for (int d = 0; d < dofs; ++d)
|
||||
{
|
||||
maps.dofToQuad(q, d) = d2q[d];
|
||||
maps.dofToQuadD(q, d) = d2qD[d];
|
||||
}
|
||||
}
|
||||
|
||||
maps.dofToQuad.keepInDevice();
|
||||
maps.dofToQuadD.keepInDevice();
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
for (int q = 0; q < quadPointsND; ++q)
|
||||
{
|
||||
const int qx = q % quadPoints;
|
||||
const int qz = q / quadPoints2D;
|
||||
const int qy = (q - qz*quadPoints2D) / quadPoints;
|
||||
double w = quadWeights1DData[qx];
|
||||
if (dims > 1)
|
||||
{
|
||||
w *= quadWeights1DData[qy];
|
||||
}
|
||||
if (dims > 2)
|
||||
{
|
||||
w *= quadWeights1DData[qz];
|
||||
}
|
||||
maps.quadWeights[q] = w;
|
||||
}
|
||||
maps.quadWeights.keepInDevice();
|
||||
delete [] quadWeights1DData;
|
||||
}
|
||||
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return GetSimplexMaps(device,
|
||||
fe, fe,
|
||||
ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "Simplex"
|
||||
<< "O1:" << trialFE.GetOrder()
|
||||
<< "O2:" << testFE.GetOrder()
|
||||
<< "Q:" << ir.GetNPoints();
|
||||
std::string hash = ss.str();
|
||||
|
||||
// If we've already made the dof-quad maps, reuse them
|
||||
OccaDofQuadMaps &maps = AllDofQuadMaps[hash];
|
||||
if (!maps.hash.size())
|
||||
{
|
||||
// Create the dof-quad maps
|
||||
maps.hash = hash;
|
||||
|
||||
OccaDofQuadMaps trialMaps = GetD2QSimplexMaps(device, trialFE, ir);
|
||||
OccaDofQuadMaps testMaps = GetD2QSimplexMaps(device, testFE , ir, true);
|
||||
|
||||
maps.dofToQuad = trialMaps.dofToQuad;
|
||||
maps.dofToQuadD = trialMaps.dofToQuadD;
|
||||
maps.quadToDof = testMaps.dofToQuad;
|
||||
maps.quadToDofD = testMaps.dofToQuadD;
|
||||
maps.quadWeights = testMaps.quadWeights;
|
||||
}
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps OccaDofQuadMaps::GetD2QSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const int dims = fe.GetDim();
|
||||
const int numDofs = fe.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
OccaDofQuadMaps maps;
|
||||
// Initialize the dof -> quad mapping
|
||||
maps.dofToQuad.allocate(device,
|
||||
numQuad, numDofs);
|
||||
maps.dofToQuadD.allocate(device,
|
||||
dims, numQuad, numDofs);
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
maps.dofToQuad.reindex(1,0);
|
||||
maps.dofToQuadD.reindex(1,0);
|
||||
// Initialize quad weights only for transpose
|
||||
maps.quadWeights.allocate(device,
|
||||
numQuad);
|
||||
}
|
||||
|
||||
mfem::Vector d2q(numDofs);
|
||||
mfem::DenseMatrix d2qD(numDofs, dims);
|
||||
for (int q = 0; q < numQuad; ++q)
|
||||
{
|
||||
const mfem::IntegrationPoint &ip = ir.IntPoint(q);
|
||||
if (transpose)
|
||||
{
|
||||
maps.quadWeights[q] = ip.weight;
|
||||
}
|
||||
fe.CalcShape(ip, d2q);
|
||||
fe.CalcDShape(ip, d2qD);
|
||||
for (int d = 0; d < numDofs; ++d)
|
||||
{
|
||||
const double w = d2q[d];
|
||||
maps.dofToQuad(q, d) = w;
|
||||
for (int dim = 0; dim < dims; ++dim)
|
||||
{
|
||||
const double wD = d2qD(d, dim);
|
||||
maps.dofToQuadD(dim, q, d) = wD;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
maps.dofToQuad.keepInDevice();
|
||||
maps.dofToQuadD.keepInDevice();
|
||||
if (transpose)
|
||||
{
|
||||
maps.quadWeights.keepInDevice();
|
||||
}
|
||||
|
||||
return maps;
|
||||
}
|
||||
|
||||
//---[ Integrator Defines ]-----------
|
||||
std::string stringWithDim(const std::string &s, const int dim)
|
||||
{
|
||||
std::string ret = s;
|
||||
ret += ('0' + (char) dim);
|
||||
ret += 'D';
|
||||
return ret;
|
||||
}
|
||||
|
||||
int closestWarpBatchTo(const int value)
|
||||
{
|
||||
return ((value + 31) / 32) * 32;
|
||||
}
|
||||
|
||||
int closestMultipleWarpBatch(const int multiple, const int maxSize)
|
||||
{
|
||||
if (multiple > maxSize)
|
||||
{
|
||||
return maxSize;
|
||||
}
|
||||
int batch = (32 / multiple);
|
||||
int minDiff = 32 - (multiple * batch);
|
||||
for (int i = 64; i <= maxSize; i += 32)
|
||||
{
|
||||
const int newDiff = i - (multiple * (i / multiple));
|
||||
if (newDiff < minDiff)
|
||||
{
|
||||
batch = (i / multiple);
|
||||
minDiff = newDiff;
|
||||
}
|
||||
}
|
||||
return batch;
|
||||
}
|
||||
|
||||
void SetProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["defines/TRIAL_VDIM"] = trialFESpace.GetVDim();
|
||||
props["defines/TEST_VDIM"] = testFESpace.GetVDim();
|
||||
props["defines/NUM_DIM"] = trialFESpace.GetDim();
|
||||
|
||||
if (trialFESpace.hasTensorBasis())
|
||||
{
|
||||
SetTensorProperties(trialFESpace, testFESpace, ir, props);
|
||||
}
|
||||
else
|
||||
{
|
||||
SetSimplexProperties(trialFESpace, testFESpace, ir, props);
|
||||
}
|
||||
}
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetTensorProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace.GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace.GetFE(0));
|
||||
|
||||
const mfem::IntegrationRule &ir1D =
|
||||
mfem::IntRules.Get(mfem::Geometry::SEGMENT, ir.GetOrder());
|
||||
|
||||
const int trialDofs = trialFE.GetDof();
|
||||
const int testDofs = testFE.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
const int trialDofs1D = trialFE.GetOrder() + 1;
|
||||
const int testDofs1D = testFE.GetOrder() + 1;
|
||||
const int quad1D = ir1D.GetNPoints();
|
||||
int trialDofsND = trialDofs1D;
|
||||
int testDofsND = testDofs1D;
|
||||
int quadND = quad1D;
|
||||
|
||||
const bool trialByVDIM = (trialFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
const bool testByVDIM = (testFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TRIAL_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TEST_ORDERING"] = (int) testByVDIM;
|
||||
|
||||
props["defines/USING_TENSOR_OPS"] = 1;
|
||||
props["defines/NUM_DOFS"] = trialDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
|
||||
props["defines/TRIAL_DOFS"] = trialDofs;
|
||||
props["defines/TEST_DOFS"] = testDofs;
|
||||
|
||||
for (int d = 1; d <= 3; ++d)
|
||||
{
|
||||
if (d > 1)
|
||||
{
|
||||
trialDofsND *= trialDofs1D;
|
||||
testDofsND *= testDofs1D;
|
||||
quadND *= quad1D;
|
||||
}
|
||||
props["defines"][stringWithDim("NUM_DOFS_", d)] = trialDofsND;
|
||||
props["defines"][stringWithDim("NUM_QUAD_", d)] = quadND;
|
||||
|
||||
props["defines"][stringWithDim("TRIAL_DOFS_", d)] = trialDofsND;
|
||||
props["defines"][stringWithDim("TEST_DOFS_" , d)] = testDofsND;
|
||||
}
|
||||
|
||||
// 1D Defines
|
||||
const int m1InnerBatch = 32 * ((quad1D + 31) / 32);
|
||||
props["defines/A1_ELEMENT_BATCH"] = closestMultipleWarpBatch(quad1D, 512);
|
||||
props["defines/M1_OUTER_ELEMENT_BATCH"] = closestMultipleWarpBatch(m1InnerBatch,
|
||||
512);
|
||||
props["defines/M1_INNER_ELEMENT_BATCH"] = m1InnerBatch;
|
||||
|
||||
// 2D Defines
|
||||
props["defines/A2_ELEMENT_BATCH"] = 1;
|
||||
props["defines/A2_QUAD_BATCH"] = 1;
|
||||
props["defines/M2_ELEMENT_BATCH"] = 32;
|
||||
|
||||
// 3D Defines
|
||||
const int a3QuadBatch = closestMultipleWarpBatch(quadND, 512);
|
||||
props["defines/A3_ELEMENT_BATCH"] = closestMultipleWarpBatch(a3QuadBatch, 512);
|
||||
props["defines/A3_QUAD_BATCH"] = a3QuadBatch;
|
||||
}
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetSimplexProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace.GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace.GetFE(0));
|
||||
|
||||
const int trialDofs = trialFE.GetDof();
|
||||
const int testDofs = testFE.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
const int maxDQ = std::max(std::max(trialDofs, testDofs), numQuad);
|
||||
|
||||
const bool trialByVDIM = (trialFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
const bool testByVDIM = (testFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TRIAL_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TEST_ORDERING"] = (int) testByVDIM;
|
||||
|
||||
props["defines/USING_TENSOR_OPS"] = 0;
|
||||
props["defines/NUM_DOFS"] = trialDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
|
||||
props["defines/TRIAL_DOFS"] = trialDofs;
|
||||
props["defines/TEST_DOFS"] = testDofs;
|
||||
|
||||
// 2D Defines
|
||||
const int quadBatch = closestWarpBatchTo(numQuad);
|
||||
props["defines/A2_ELEMENT_BATCH"] = closestMultipleWarpBatch(quadBatch, 2048);
|
||||
props["defines/A2_QUAD_BATCH"] = quadBatch;
|
||||
props["defines/M2_INNER_BATCH"] = closestWarpBatchTo(maxDQ);
|
||||
|
||||
// 3D Defines
|
||||
props["defines/A3_ELEMENT_BATCH"] = closestMultipleWarpBatch(quadBatch, 2048);
|
||||
props["defines/A3_QUAD_BATCH"] = quadBatch;
|
||||
props["defines/M3_INNER_BATCH"] = closestWarpBatchTo(maxDQ);
|
||||
}
|
||||
|
||||
|
||||
//---[ Base Integrator ]--------------
|
||||
OccaIntegrator::OccaIntegrator(const Engine &e)
|
||||
: engine(&e),
|
||||
bform(),
|
||||
mesh(),
|
||||
otrialFESpace(),
|
||||
otestFESpace(),
|
||||
trialFESpace(),
|
||||
testFESpace(),
|
||||
itype(DomainIntegrator),
|
||||
ir(NULL),
|
||||
hasTensorBasis(false) { }
|
||||
|
||||
OccaIntegrator::~OccaIntegrator() {}
|
||||
|
||||
void OccaIntegrator::SetupMaps()
|
||||
{
|
||||
maps = OccaDofQuadMaps::Get(GetDevice(),
|
||||
*otrialFESpace,
|
||||
*otestFESpace,
|
||||
*ir);
|
||||
|
||||
mapsTranspose = OccaDofQuadMaps::Get(GetDevice(),
|
||||
*otestFESpace,
|
||||
*otrialFESpace,
|
||||
*ir);
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaIntegrator::GetTrialOccaFESpace() const
|
||||
{
|
||||
return *otrialFESpace;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaIntegrator::GetTestOccaFESpace() const
|
||||
{
|
||||
return *otestFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaIntegrator::GetTrialFESpace() const
|
||||
{
|
||||
return *trialFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaIntegrator::GetTestFESpace() const
|
||||
{
|
||||
return *testFESpace;
|
||||
}
|
||||
|
||||
void OccaIntegrator::SetIntegrationRule(const mfem::IntegrationRule &ir_)
|
||||
{
|
||||
ir = &ir_;
|
||||
}
|
||||
|
||||
const mfem::IntegrationRule& OccaIntegrator::GetIntegrationRule() const
|
||||
{
|
||||
return *ir;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaIntegrator::GetDofQuadMaps()
|
||||
{
|
||||
return maps;
|
||||
}
|
||||
|
||||
void OccaIntegrator::SetupIntegrator(OccaBilinearForm &bform_,
|
||||
const ::occa::properties &props_,
|
||||
const OccaIntegratorType itype_)
|
||||
{
|
||||
MFEM_ASSERT(engine == &bform_.OccaEngine(), "");
|
||||
bform = &bform_;
|
||||
mesh = &(bform_.GetMesh());
|
||||
|
||||
otrialFESpace = &(bform_.GetTrialOccaFESpace());
|
||||
otestFESpace = &(bform_.GetTestOccaFESpace());
|
||||
|
||||
trialFESpace = &(bform_.GetTrialFESpace());
|
||||
testFESpace = &(bform_.GetTestFESpace());
|
||||
|
||||
hasTensorBasis = otrialFESpace->hasTensorBasis();
|
||||
|
||||
props = props_;
|
||||
itype = itype_;
|
||||
|
||||
if (ir == NULL)
|
||||
{
|
||||
SetupIntegrationRule();
|
||||
}
|
||||
|
||||
SetupMaps();
|
||||
|
||||
SetProperties(*otrialFESpace,
|
||||
*otestFESpace,
|
||||
*ir,
|
||||
props);
|
||||
|
||||
Setup();
|
||||
}
|
||||
|
||||
OccaGeometry OccaIntegrator::GetGeometry(const int flags)
|
||||
{
|
||||
return OccaGeometry::Get(GetDevice(), *otrialFESpace, *ir, flags);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetAssembleKernel(const ::occa::properties
|
||||
&props)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
return GetKernel(stringWithDim("Assemble", fe.GetDim()),
|
||||
props);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetMultAddKernel(const ::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
return GetKernel(stringWithDim("MultAdd", fe.GetDim()),
|
||||
props);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetKernel(const std::string &kernelName,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const std::string filename = GetName() + ".okl";
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
return GetDevice().buildKernel(okl_path + filename,
|
||||
kernelName,
|
||||
props);
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Diffusion Integrator ]---------
|
||||
OccaDiffusionIntegrator::OccaDiffusionIntegrator(const OccaCoefficient &coeff_)
|
||||
:
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaDiffusionIntegrator::~OccaDiffusionIntegrator() {}
|
||||
|
||||
|
||||
std::string OccaDiffusionIntegrator::GetName()
|
||||
{
|
||||
return "DiffusionIntegrator";
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
ir = &mfem::DiffusionIntegrator::GetRule(trialFE, testFE);
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::Assemble()
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
|
||||
const int dims = fe.GetDim();
|
||||
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.OccaResize(symmDims * quadraturePoints * elements,
|
||||
sizeof(double));
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
// Note: x and y are E-vectors
|
||||
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Mass Integrator ]--------------
|
||||
OccaMassIntegrator::OccaMassIntegrator(const OccaCoefficient &coeff_) :
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaMassIntegrator::~OccaMassIntegrator() {}
|
||||
|
||||
std::string OccaMassIntegrator::GetName()
|
||||
{
|
||||
return "MassIntegrator";
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
mfem::ElementTransformation &T = *trialFESpace->GetElementTransformation(0);
|
||||
ir = &mfem::MassIntegrator::GetRule(trialFE, testFE, T);
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::Assemble()
|
||||
{
|
||||
if (assembledOperator.Size())
|
||||
{
|
||||
return;
|
||||
}
|
||||
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(quadraturePoints * elements, NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::SetOperator(Vector &v)
|
||||
{
|
||||
assembledOperator = v;
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Vector Mass Integrator ]--------------
|
||||
OccaVectorMassIntegrator::OccaVectorMassIntegrator(const OccaCoefficient &
|
||||
coeff_)
|
||||
:
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaVectorMassIntegrator::~OccaVectorMassIntegrator() {}
|
||||
|
||||
std::string OccaVectorMassIntegrator::GetName()
|
||||
{
|
||||
return "VectorMassIntegrator";
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
mfem::ElementTransformation &T = *trialFESpace->GetElementTransformation(0);
|
||||
ir = &mfem::MassIntegrator::GetRule(trialFE, testFE, T);
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::Assemble()
|
||||
{
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(quadraturePoints * elements, NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,323 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "coefficient.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaGeometry
|
||||
{
|
||||
public:
|
||||
::occa::array<double> meshNodes;
|
||||
::occa::array<double> J, invJ, detJ;
|
||||
|
||||
// byVDIM -> [x y z x y z x y z]
|
||||
// byNodes -> [x x x y y y z z z]
|
||||
static const int Jacobian = (1 << 0);
|
||||
static const int JacobianInv = (1 << 1);
|
||||
static const int JacobianDet = (1 << 2);
|
||||
|
||||
static OccaGeometry Get(::occa::device device,
|
||||
FiniteElementSpace &ofespace,
|
||||
const IntegrationRule &ir,
|
||||
const int flags = (Jacobian |
|
||||
JacobianInv |
|
||||
JacobianDet));
|
||||
};
|
||||
|
||||
class OccaDofQuadMaps
|
||||
{
|
||||
private:
|
||||
// Reuse dof-quad maps
|
||||
static std::map<std::string, OccaDofQuadMaps> AllDofQuadMaps;
|
||||
std::string hash;
|
||||
|
||||
public:
|
||||
// Local stiffness matrices (B and B^T operators)
|
||||
::occa::array<double, ::occa::dynamic> dofToQuad, dofToQuadD; // B
|
||||
::occa::array<double, ::occa::dynamic> quadToDof, quadToDofD; // B^T
|
||||
::occa::array<double> quadWeights;
|
||||
|
||||
OccaDofQuadMaps();
|
||||
OccaDofQuadMaps(const OccaDofQuadMaps &maps);
|
||||
OccaDofQuadMaps& operator = (const OccaDofQuadMaps &maps);
|
||||
|
||||
// [[x y] [x y] [x y]]
|
||||
// [[x y z] [x y z] [x y z]]
|
||||
// mfem::GridFunction* mfem::Mesh::GetNodes() { return Nodes; }
|
||||
|
||||
// mfem::FiniteElementSpace *Nodes->FESpace()
|
||||
// 25
|
||||
// 1D [x x x x x x]
|
||||
// 2D [x y x y x y]
|
||||
// GetVdim()
|
||||
// 3D ordering == byVDIM -> [x y z x y z x y z x y z x y z x y z]
|
||||
// ordering == byNODES -> [x x x x x x y y y y y y z z z z z z]
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const FiniteElementSpace &trialFESpace,
|
||||
const FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps GetD2QTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps GetD2QSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
};
|
||||
|
||||
//---[ Define Methods ]---------------
|
||||
std::string stringWithDim(const std::string &s, const int dim);
|
||||
int closestWarpBatch(const int multiple, const int maxSize);
|
||||
|
||||
void SetProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &fespace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
//---[ Base Integrator ]--------------
|
||||
class OccaIntegrator
|
||||
{
|
||||
protected:
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
OccaBilinearForm *bform;
|
||||
mfem::Mesh *mesh;
|
||||
|
||||
FiniteElementSpace *otrialFESpace;
|
||||
FiniteElementSpace *otestFESpace;
|
||||
|
||||
mfem::FiniteElementSpace *trialFESpace;
|
||||
mfem::FiniteElementSpace *testFESpace;
|
||||
|
||||
::occa::properties props;
|
||||
OccaIntegratorType itype;
|
||||
|
||||
const IntegrationRule *ir;
|
||||
bool hasTensorBasis;
|
||||
OccaDofQuadMaps maps;
|
||||
OccaDofQuadMaps mapsTranspose;
|
||||
|
||||
public:
|
||||
OccaIntegrator(const Engine &e);
|
||||
virtual ~OccaIntegrator();
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
virtual std::string GetName() = 0;
|
||||
|
||||
FiniteElementSpace& GetTrialOccaFESpace() const;
|
||||
FiniteElementSpace& GetTestOccaFESpace() const;
|
||||
|
||||
mfem::FiniteElementSpace& GetTrialFESpace() const;
|
||||
mfem::FiniteElementSpace& GetTestFESpace() const;
|
||||
|
||||
void SetIntegrationRule(const mfem::IntegrationRule &ir_);
|
||||
const mfem::IntegrationRule& GetIntegrationRule() const;
|
||||
|
||||
OccaDofQuadMaps& GetDofQuadMaps();
|
||||
|
||||
void SetupMaps();
|
||||
|
||||
virtual void SetupIntegrationRule() = 0;
|
||||
|
||||
virtual void SetupIntegrator(OccaBilinearForm &bform_,
|
||||
const ::occa::properties &props_,
|
||||
const OccaIntegratorType itype_);
|
||||
|
||||
virtual void Setup() = 0;
|
||||
|
||||
virtual void Assemble() = 0;
|
||||
/// This method works on E-vectors!
|
||||
virtual void MultAdd(Vector &x, Vector &y) = 0;
|
||||
|
||||
virtual void MultTransposeAdd(Vector &x, Vector &y)
|
||||
{
|
||||
mfem_error("OccaIntegrator::MultTransposeAdd() is not overloaded!");
|
||||
}
|
||||
|
||||
OccaGeometry GetGeometry(const int flags = (OccaGeometry::Jacobian |
|
||||
OccaGeometry::JacobianInv |
|
||||
OccaGeometry::JacobianDet));
|
||||
|
||||
::occa::kernel GetAssembleKernel(const ::occa::properties &props);
|
||||
::occa::kernel GetMultAddKernel(const ::occa::properties &props);
|
||||
|
||||
::occa::kernel GetKernel(const std::string &kernelName,
|
||||
const ::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Diffusion Integrator ]---------
|
||||
class OccaDiffusionIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaDiffusionIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaDiffusionIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Mass Integrator ]--------------
|
||||
class OccaMassIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaMassIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaMassIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
void SetOperator(Vector &v);
|
||||
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
//====================================
|
||||
|
||||
//---[ Vector Mass Integrator ]--------------
|
||||
class OccaVectorMassIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaVectorMassIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaVectorMassIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
@@ -0,0 +1,357 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "coefficient.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
//---[ Parameter ]------------
|
||||
OccaParameter::~OccaParameter() {}
|
||||
|
||||
void OccaParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props) {}
|
||||
|
||||
::occa::kernelArg OccaParameter::KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg();
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Include Parameter ]------------
|
||||
OccaIncludeParameter::OccaIncludeParameter(const std::string &filename_) :
|
||||
filename(filename_) {}
|
||||
|
||||
OccaParameter* OccaIncludeParameter::Clone()
|
||||
{
|
||||
return new OccaIncludeParameter(filename);
|
||||
}
|
||||
|
||||
void OccaIncludeParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["headers"].asArray() += "#include " + filename;
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Source Parameter ]------------
|
||||
OccaSourceParameter::OccaSourceParameter(const std::string &source_) :
|
||||
source(source_) {}
|
||||
|
||||
OccaParameter* OccaSourceParameter::Clone()
|
||||
{
|
||||
return new OccaSourceParameter(source);
|
||||
}
|
||||
|
||||
void OccaSourceParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["headers"].asArray() += source;
|
||||
}
|
||||
//====================================
|
||||
|
||||
//---[ Vector Parameter ]-------
|
||||
OccaVectorParameter::OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const bool useRestrict_) :
|
||||
name(name_),
|
||||
v(v_),
|
||||
useRestrict(useRestrict_),
|
||||
attr("") {}
|
||||
|
||||
OccaVectorParameter::OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const std::string &attr_,
|
||||
const bool useRestrict_) :
|
||||
name(name_),
|
||||
v(v_),
|
||||
useRestrict(useRestrict_),
|
||||
attr(attr_) {}
|
||||
|
||||
OccaParameter* OccaVectorParameter::Clone()
|
||||
{
|
||||
return new OccaVectorParameter(name, v, attr, useRestrict);
|
||||
}
|
||||
|
||||
void OccaVectorParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
args += "const double *";
|
||||
if (useRestrict)
|
||||
{
|
||||
args += " restrict ";
|
||||
}
|
||||
args += name;
|
||||
if (attr.size())
|
||||
{
|
||||
args += ' ';
|
||||
args += attr;
|
||||
}
|
||||
args += ",\n";
|
||||
}
|
||||
|
||||
::occa::kernelArg OccaVectorParameter::KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg(v.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ GridFunction Parameter ]-------
|
||||
OccaGridFunctionParameter::OccaGridFunctionParameter(const std::string &name_,
|
||||
const Engine &e,
|
||||
mfem::GridFunction &gf_,
|
||||
const bool useRestrict_)
|
||||
: name(name_),
|
||||
gf(gf_),
|
||||
gfQuad(e),
|
||||
useRestrict(useRestrict_) {}
|
||||
|
||||
OccaParameter* OccaGridFunctionParameter::Clone()
|
||||
{
|
||||
OccaGridFunctionParameter *param =
|
||||
new OccaGridFunctionParameter(name, gfQuad.OccaEngine(), gf, useRestrict);
|
||||
param->gfQuad.MakeRef(gfQuad);
|
||||
return param;
|
||||
}
|
||||
|
||||
void OccaGridFunctionParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
if (useRestrict)
|
||||
{
|
||||
args += "@restrict ";
|
||||
}
|
||||
args += "const double *";
|
||||
args += name;
|
||||
args += " @dim(NUM_QUAD, numElements),\n";
|
||||
|
||||
FiniteElementSpace &f = gf.FESpace()->Get_PFESpace()->As<FiniteElementSpace>();
|
||||
ToQuad(integ.GetIntegrationRule(), f, gf.Get_PVector()->As<Vector>(), gfQuad);
|
||||
}
|
||||
|
||||
::occa::kernelArg OccaGridFunctionParameter::KernelArgs()
|
||||
{
|
||||
return gfQuad.OccaMem();
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Coefficient ]------------------
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const double value) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = value;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, mfem::GridFunction &gf,
|
||||
const bool useRestrict) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = "(u(q, e))";
|
||||
AddGridFunction("u", gf, useRestrict);
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const std::string &source) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = source;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const char *source) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = source;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const OccaCoefficient &coeff) :
|
||||
engine(coeff.engine),
|
||||
integ(NULL),
|
||||
name(coeff.name),
|
||||
coeffValue(coeff.coeffValue)
|
||||
{
|
||||
|
||||
const int paramCount = (int) coeff.params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
params.push_back(coeff.params[i]->Clone());
|
||||
}
|
||||
}
|
||||
|
||||
OccaCoefficient::~OccaCoefficient()
|
||||
{
|
||||
const int paramCount = (int) params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
delete params[i];
|
||||
}
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::SetName(const std::string &name_)
|
||||
{
|
||||
name = name_;
|
||||
return *this;
|
||||
}
|
||||
|
||||
void OccaCoefficient::Setup(OccaIntegrator &integ_,
|
||||
::occa::properties &props_)
|
||||
{
|
||||
integ = &integ_;
|
||||
|
||||
const int paramCount = (int) params.size();
|
||||
props_["defines"][name + "_ARGS"] = "";
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
params[i]->Setup(integ_, props_);
|
||||
}
|
||||
props_["defines"][name] = coeffValue;
|
||||
|
||||
props = props_;
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::Add(OccaParameter *param)
|
||||
{
|
||||
params.push_back(param);
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::IncludeHeader(const std::string &filename)
|
||||
{
|
||||
return Add(new OccaIncludeParameter(filename));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::IncludeSource(const std::string &source)
|
||||
{
|
||||
return Add(new OccaSourceParameter(source));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaVectorParameter(name_, v, useRestrict));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const std::string &attr,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaVectorParameter(name_, v, attr, useRestrict));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddGridFunction(const std::string &name_,
|
||||
mfem::GridFunction &gf,
|
||||
const bool useRestrict)
|
||||
{
|
||||
MFEM_ASSERT(engine->CheckVector(gf.Get_PVector()) &&
|
||||
engine->CheckFESpace(gf.FESpace()->Get_PFESpace()),
|
||||
"invalid device GridFunction");
|
||||
return Add(new OccaGridFunctionParameter(name_, *engine, gf, useRestrict));
|
||||
}
|
||||
|
||||
bool OccaCoefficient::IsConstant()
|
||||
{
|
||||
return coeffValue.isNumber();
|
||||
}
|
||||
|
||||
double OccaCoefficient::GetConstantValue()
|
||||
{
|
||||
if (!IsConstant())
|
||||
{
|
||||
mfem_error("OccaCoefficient is not constant");
|
||||
}
|
||||
return coeffValue.number();
|
||||
}
|
||||
|
||||
Vector OccaCoefficient::Eval()
|
||||
{
|
||||
if (integ == NULL)
|
||||
{
|
||||
mfem_error("OccaCoefficient requires a Setup() call before Eval()");
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace &fespace = integ->GetTrialFESpace();
|
||||
const mfem::IntegrationRule &ir = integ->GetIntegrationRule();
|
||||
|
||||
const int elements = fespace.GetNE();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
Vector quadCoeff(*(new Layout(OccaEngine(), numQuad * elements)));
|
||||
Eval(quadCoeff);
|
||||
return quadCoeff;
|
||||
}
|
||||
|
||||
void OccaCoefficient::Eval(Vector &quadCoeff)
|
||||
{
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
static ::occa::kernelBuilder builder =
|
||||
::occa::kernelBuilder::fromFile(okl_path + "coefficient.okl",
|
||||
"CoefficientEval");
|
||||
|
||||
if (integ == NULL)
|
||||
{
|
||||
mfem_error("OccaCoefficient requires a Setup() call before Eval()");
|
||||
}
|
||||
|
||||
const int elements = integ->GetTrialFESpace().GetNE();
|
||||
|
||||
::occa::properties kernelProps = props;
|
||||
if (name != "COEFF")
|
||||
{
|
||||
kernelProps["defines/COEFF"] = name;
|
||||
kernelProps["defines/COEFF_ARGS"] = name + "_ARGS";
|
||||
}
|
||||
|
||||
::occa::kernel evalKernel = builder.build(GetDevice(), kernelProps);
|
||||
evalKernel(elements, *this, quadCoeff.OccaMem());
|
||||
}
|
||||
|
||||
OccaCoefficient::operator ::occa::kernelArg ()
|
||||
{
|
||||
::occa::kernelArg kArg;
|
||||
const int paramCount = (int) params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
kArg.add(params[i]->KernelArgs());
|
||||
}
|
||||
return kArg;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,287 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaIntegrator;
|
||||
|
||||
|
||||
class OccaParameter
|
||||
{
|
||||
public:
|
||||
virtual ~OccaParameter();
|
||||
|
||||
virtual OccaParameter* Clone() = 0;
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
|
||||
|
||||
//---[ Include Parameter ]------------
|
||||
class OccaIncludeParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
std::string filename;
|
||||
|
||||
public:
|
||||
OccaIncludeParameter(const std::string &filename_);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Source Parameter ]------------
|
||||
class OccaSourceParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
std::string source;
|
||||
|
||||
public:
|
||||
OccaSourceParameter(const std::string &filename_);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Define Parameter ]------------
|
||||
template <class TM>
|
||||
class OccaDefineParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
TM value;
|
||||
|
||||
public:
|
||||
OccaDefineParameter(const std::string &name_,
|
||||
const TM &value_) :
|
||||
name(name_),
|
||||
value(value_) {}
|
||||
|
||||
virtual OccaParameter* Clone()
|
||||
{
|
||||
return new OccaDefineParameter(name, value);
|
||||
}
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["defines"][name] = value;
|
||||
}
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Variable Parameter ]-----------
|
||||
template <class TM>
|
||||
class OccaVariableParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
const TM &value;
|
||||
|
||||
public:
|
||||
OccaVariableParameter(const std::string &name_,
|
||||
const TM &value_) :
|
||||
name(name_),
|
||||
value(value_) {}
|
||||
|
||||
virtual OccaParameter* Clone()
|
||||
{
|
||||
return new OccaVariableParameter(name, value);
|
||||
}
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
// const TM name,\n"
|
||||
args += "const ";
|
||||
args += ::occa::primitiveinfo<TM>::name;
|
||||
args += ' ';
|
||||
args += name;
|
||||
args += ",\n";
|
||||
}
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg(value);
|
||||
}
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Vector Parameter ]-------
|
||||
class OccaVectorParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
Vector v;
|
||||
bool useRestrict;
|
||||
std::string attr;
|
||||
|
||||
public:
|
||||
OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const std::string &attr_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ GridFunction Parameter ]-------
|
||||
class OccaGridFunctionParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
mfem::GridFunction &gf;
|
||||
Vector gfQuad;
|
||||
bool useRestrict;
|
||||
|
||||
public:
|
||||
OccaGridFunctionParameter(const std::string &name_,
|
||||
const Engine &e,
|
||||
mfem::GridFunction &gf_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Coefficient ]------------------
|
||||
// [MISSING]
|
||||
// Needs to know about the integrator's
|
||||
// - fespace
|
||||
// - ir
|
||||
// Step where parameters that need the ir get called for setup
|
||||
// For example, GridFunction (d, e) -> (q, e)
|
||||
class OccaCoefficient
|
||||
{
|
||||
private:
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
OccaIntegrator *integ;
|
||||
|
||||
std::string name;
|
||||
::occa::json coeffValue;
|
||||
|
||||
::occa::properties props;
|
||||
std::vector<OccaParameter*> params;
|
||||
|
||||
public:
|
||||
OccaCoefficient(const Engine &e, const double value = 1.0);
|
||||
OccaCoefficient(const Engine &e, mfem::GridFunction &gf,
|
||||
const bool useRestrict = false);
|
||||
OccaCoefficient(const Engine &e, const std::string &source);
|
||||
OccaCoefficient(const Engine &e, const char *source);
|
||||
~OccaCoefficient();
|
||||
|
||||
OccaCoefficient(const OccaCoefficient &coeff);
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
OccaCoefficient& SetName(const std::string &name_);
|
||||
|
||||
void Setup(OccaIntegrator &integ_,
|
||||
::occa::properties &props_);
|
||||
|
||||
OccaCoefficient& Add(OccaParameter *param);
|
||||
|
||||
OccaCoefficient& IncludeHeader(const std::string &filename);
|
||||
OccaCoefficient& IncludeSource(const std::string &source);
|
||||
|
||||
template <class TM>
|
||||
OccaCoefficient& AddDefine(const std::string &name_, const TM &value)
|
||||
{
|
||||
return Add(new OccaDefineParameter<TM>(name_, value));
|
||||
}
|
||||
|
||||
template <class TM>
|
||||
OccaCoefficient& AddVariable(const std::string &name_, const TM &value)
|
||||
{
|
||||
return Add(new OccaVariableParameter<TM>(name_, value));
|
||||
}
|
||||
|
||||
OccaCoefficient& AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const bool useRestrict = false);
|
||||
|
||||
|
||||
OccaCoefficient& AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const std::string &attr,
|
||||
const bool useRestrict = false);
|
||||
|
||||
OccaCoefficient& AddGridFunction(const std::string &name_,
|
||||
mfem::GridFunction &gf,
|
||||
const bool useRestrict = false);
|
||||
|
||||
bool IsConstant();
|
||||
double GetConstantValue();
|
||||
|
||||
Vector Eval();
|
||||
void Eval(Vector &quadCoeff);
|
||||
|
||||
operator ::occa::kernelArg ();
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_OCCA_DEFINES
|
||||
#define MFEM_OCCA_DEFINES
|
||||
|
||||
#ifndef USING_TENSOR_OPS
|
||||
# define USING_TENSOR_OPS 0
|
||||
#endif
|
||||
|
||||
#ifdef OCCA_USING_GPU
|
||||
# define GPU_ORDER_2(I0, I1) @dimOrder(I0, I1)
|
||||
# define GPU_ORDER_3(I0, I1, I2) @dimOrder(I0, I1, I2)
|
||||
# define GPU_ORDER_4(I0, I1, I2, I3) @dimOrder(I0, I1, I2, I3)
|
||||
#else
|
||||
# define GPU_ORDER_2(I0, I1) @dimOrder(0, 1)
|
||||
# define GPU_ORDER_3(I0, I1, I2) @dimOrder(0, 1, 2)
|
||||
# define GPU_ORDER_4(I0, I1, I2, I3) @dimOrder(0, 1, 2, 3)
|
||||
#endif
|
||||
|
||||
#ifndef COEFF
|
||||
# define COEFF 1.0
|
||||
# define COEFF_ARGS
|
||||
#endif
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# include "mfem-occa://defines/tensor.okl"
|
||||
#else
|
||||
# include "mfem-occa://defines/simplex.okl"
|
||||
#endif
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#define USING_LOW_ORDER 1
|
||||
#define USING_HI_ORDER 0
|
||||
|
||||
typedef double* DofToQuad_t @dim(NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD2D_t @dim(2, NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD3D_t @dim(3, NUM_QUAD, NUM_DOFS);
|
||||
|
||||
typedef double* QuadToDof_t @dim(NUM_DOFS, NUM_QUAD);
|
||||
typedef double* QuadToDofD2D_t @dim(2, NUM_DOFS, NUM_QUAD);
|
||||
typedef double* QuadToDofD3D_t @dim(3, NUM_DOFS, NUM_QUAD);
|
||||
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD, numElements);
|
||||
|
||||
typedef double* SymmOperator2D_t @dim(3, NUM_QUAD, numElements);
|
||||
typedef double* SymmOperator3D_t @dim(6, NUM_QUAD, numElements);
|
||||
|
||||
typedef double* DLocal_t @dim(NUM_DOFS, numElements);
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements);
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements);
|
||||
#else
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements) @dimOrder(2,0,1);
|
||||
#endif
|
||||
|
||||
typedef int* DLocalMap_t @dim(NUM_DOFS, numElements);
|
||||
@@ -0,0 +1,85 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#if NUM_QUAD_1D < NUM_DOFS_1D
|
||||
# define NUM_MAX_1D NUM_DOFS_1D
|
||||
#else
|
||||
# define NUM_MAX_1D NUM_QUAD_1D
|
||||
#endif
|
||||
|
||||
#define NUM_MAX_2D (NUM_MAX_1D * NUM_MAX_1D)
|
||||
|
||||
#define NUM_QUAD_DOFS_1D (NUM_QUAD_1D * NUM_DOFS_1D)
|
||||
|
||||
#define QUAD_2D_ID(X, Y) (X + ((Y) * NUM_QUAD_1D))
|
||||
#define DOFS_2D_ID(X, Y) (X + ((Y) * NUM_DOFS_1D))
|
||||
|
||||
#define QUAD_3D_ID(X, Y, Z) (X + ((Y) * NUM_QUAD_1D) + ((Z) * NUM_QUAD_2D))
|
||||
#define DOFS_3D_ID(X, Y, Z) (X + ((Y) * NUM_DOFS_1D) + ((Z) * NUM_DOFS_2D))
|
||||
|
||||
#if NUM_MAX_1D < 8
|
||||
# define USING_LOW_ORDER 1
|
||||
# define USING_HI_ORDER 0
|
||||
#else
|
||||
# define USING_LOW_ORDER 0
|
||||
# define USING_HI_ORDER 1
|
||||
#endif
|
||||
|
||||
#define M1_ELEMENT_BATCHES (M1_OUTER_ELEMENT_BATCH * M1_INNER_ELEMENT_BATCH)
|
||||
|
||||
typedef double* DofToQuad_t @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
typedef double* QuadToDof_t @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
typedef double* Jacobian_t @dim(NUM_DIM, NUM_DIM, numElements);
|
||||
typedef double* Jacobian1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD_2D, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD_3D, numElements);
|
||||
|
||||
typedef double* SymmOperator1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* SymmOperator2D_t @dim(3, NUM_QUAD_2D, numElements);
|
||||
typedef double* SymmOperator3D_t @dim(6, NUM_QUAD_3D, numElements);
|
||||
|
||||
typedef double* DLocal_t @dim(NUM_DOFS, numElements);
|
||||
typedef double* DLocal1D_t @dim(NUM_DOFS_1D, numElements);
|
||||
typedef double* DLocal2D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef double* DLocal3D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
typedef double* QLocal1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* QLocal2D_t @dim(NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
typedef double* QLocal3D_t @dim(NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements);
|
||||
typedef double* DVLocal1D_t @dim(NUM_VDIM, NUM_DOFS_1D, numElements);
|
||||
typedef double* DVLocal2D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef double* DVLocal3D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements);
|
||||
typedef double* QVLocal1D_t @dim(NUM_VDIM, NUM_QUAD_1D, numElements);
|
||||
typedef double* QVLocal2D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
typedef double* QVLocal3D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
#else
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements) @dimOrder(2,0,1);
|
||||
typedef double* DVLocal1D_t @dim(NUM_VDIM, NUM_DOFS_1D, numElements) @dimOrder(2,0,1);
|
||||
typedef double* DVLocal2D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, numElements) @dimOrder(3,0,1,2);
|
||||
typedef double* DVLocal3D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements) @dimOrder(4,0,1,2,3);
|
||||
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal1D_t @dim(NUM_VDIM, NUM_QUAD_1D, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal2D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, numElements) @dimOrder(3,0,1,2);
|
||||
typedef double* QVLocal3D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements) @dimOrder(4,0,1,2,3);
|
||||
#endif
|
||||
|
||||
typedef int* DLocalMap_t @dim(NUM_DOFS, numElements);
|
||||
typedef int* DLocalMap1D_t @dim(NUM_DOFS_1D, numElements);
|
||||
typedef int* DLocalMap2D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef int* DLocalMap3D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
@@ -0,0 +1,168 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
@restrict const double *quadWeights,
|
||||
@restrict const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict SymmOperator2D_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J12*J12 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J12*J11 + J22*J21); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J21*J21); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD2D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD2D_t quadToDofD,
|
||||
@restrict const SymmOperator2D_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
const double gradX2 = (O11 * gradX) + (O12 * gradY);
|
||||
const double gradY2 = (O12 * gradX) + (O22 * gradY);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += ((gradX2 * quadToDofD(0, d, q)) +
|
||||
(gradY2 * quadToDofD(1, d, q)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict SymmOperator3D_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3) + (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3) + (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD3D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD3D_t quadToDofD,
|
||||
@restrict const SymmOperator3D_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double gradX = 0, gradY = 0, gradZ = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
gradZ += s * quadToDofD(2, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double gradX2 = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
const double gradY2 = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
const double gradZ2 = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += ((gradX2 * quadToDofD(0, d, q)) +
|
||||
(gradY2 * quadToDofD(1, d, q)) +
|
||||
(gradZ2 * quadToDofD(2, d, q)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,182 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J12*J12 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J12*J11 + J22*J21); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J21*J21); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD2D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD2D_t quadToDofD,
|
||||
@restrict const SymmOperator2D_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gradX[NUM_QUAD];
|
||||
@shared double s_gradY[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
s_gradX[q] = (O11 * gradX) + (O12 * gradY);
|
||||
s_gradY[q] = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
// FIXME: s_gradX and s_gradY are @shared used outside of @inner
|
||||
r_sol += ((s_gradX[q] * quadToDofD(0, d, q)) +
|
||||
(s_gradY[q] * quadToDofD(1, d, q)));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3) + (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3) + (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD3D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD3D_t quadToDofD,
|
||||
@restrict const SymmOperator3D_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gradX[NUM_QUAD];
|
||||
@shared double s_gradY[NUM_QUAD];
|
||||
@shared double s_gradZ[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
double gradX = 0, gradY = 0, gradZ = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
gradZ += s * quadToDofD(2, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
s_gradX[q] = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
s_gradY[q] = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
s_gradZ[q] = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_sol += ((s_gradX[q] * quadToDofD(0, d, q)) +
|
||||
(s_gradY[q] * quadToDofD(1, d, q)) +
|
||||
(s_gradZ[q] * quadToDofD(2, d, q)));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,370 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian1D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict SymmOperator1D_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF / J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const SymmOperator1D_t oper,
|
||||
@restrict const DLocal1D_t solIn,
|
||||
@restrict DLocal1D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gradX = grad[qx];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, e) += gradX * quadToDofD(dx, qx);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict SymmOperator2D_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_2D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const SymmOperator2D_t oper,
|
||||
@restrict const DLocal2D_t solIn,
|
||||
@restrict DLocal2D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D][NUM_QUAD_1D][2];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qy][qx][0] = 0;
|
||||
grad[qy][qx][1] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double gradX[NUM_QUAD_1D][2];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] = 0;
|
||||
gradX[qx][1] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] += s * dofToQuad(qx, dx);
|
||||
gradX[qx][1] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
const double wDy = dofToQuadD(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qy][qx][0] += gradX[qx][1] * wy;
|
||||
grad[qy][qx][1] += gradX[qx][0] * wDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate Dxy, xDy in plane
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
const double gradX = grad[qy][qx][0];
|
||||
const double gradY = grad[qy][qx][1];
|
||||
|
||||
grad[qy][qx][0] = (O11 * gradX) + (O12 * gradY);
|
||||
grad[qy][qx][1] = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double gradX[NUM_DOFS_1D][2];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX[dx][0] = 0;
|
||||
gradX[dx][1] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gX = grad[qy][qx][0];
|
||||
const double gY = grad[qy][qx][1];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = quadToDof(dx, qx);
|
||||
const double wDx = quadToDofD(dx, qx);
|
||||
gradX[dx][0] += gX * wDx;
|
||||
gradX[dx][1] += gY * wx;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
const double wDy = quadToDofD(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, e) += ((gradX[dx][0] * wy) +
|
||||
(gradX[dx][1] * wDy));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict SymmOperator3D_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_3D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const SymmOperator3D_t oper,
|
||||
@restrict const DLocal3D_t solIn,
|
||||
@restrict DLocal3D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D][4];
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qz][qy][qx][0] = 0;
|
||||
grad[qz][qy][qx][1] = 0;
|
||||
grad[qz][qy][qx][2] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double gradXY[NUM_QUAD_1D][NUM_QUAD_1D][4];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradXY[qy][qx][0] = 0;
|
||||
gradXY[qy][qx][1] = 0;
|
||||
gradXY[qy][qx][2] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double gradX[NUM_QUAD_1D][2];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] = 0;
|
||||
gradX[qx][1] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] += s * dofToQuad(qx, dx);
|
||||
gradX[qx][1] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
const double wDy = dofToQuadD(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = gradX[qx][0];
|
||||
const double wDx = gradX[qx][1];
|
||||
gradXY[qy][qx][0] += wDx * wy;
|
||||
gradXY[qy][qx][1] += wx * wDy;
|
||||
gradXY[qy][qx][2] += wx * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
const double wDz = dofToQuadD(qz, dz);
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qz][qy][qx][0] += gradXY[qy][qx][0] * wz;
|
||||
grad[qz][qy][qx][1] += gradXY[qy][qx][1] * wz;
|
||||
grad[qz][qy][qx][2] += gradXY[qy][qx][2] * wDz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double gradX = grad[qz][qy][qx][0];
|
||||
const double gradY = grad[qz][qy][qx][1];
|
||||
const double gradZ = grad[qz][qy][qx][2];
|
||||
|
||||
grad[qz][qy][qx][0] = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
grad[qz][qy][qx][1] = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
grad[qz][qy][qx][2] = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
double gradXY[NUM_DOFS_1D][NUM_DOFS_1D][4];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradXY[dy][dx][0] = 0;
|
||||
gradXY[dy][dx][1] = 0;
|
||||
gradXY[dy][dx][2] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double gradX[NUM_DOFS_1D][4];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX[dx][0] = 0;
|
||||
gradX[dx][1] = 0;
|
||||
gradX[dx][2] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gX = grad[qz][qy][qx][0];
|
||||
const double gY = grad[qz][qy][qx][1];
|
||||
const double gZ = grad[qz][qy][qx][2];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = quadToDof(dx, qx);
|
||||
const double wDx = quadToDofD(dx, qx);
|
||||
gradX[dx][0] += gX * wDx;
|
||||
gradX[dx][1] += gY * wx;
|
||||
gradX[dx][2] += gZ * wx;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
const double wDy = quadToDofD(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradXY[dy][dx][0] += gradX[dx][0] * wy;
|
||||
gradXY[dy][dx][1] += gradX[dx][1] * wDy;
|
||||
gradXY[dy][dx][2] += gradX[dx][2] * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = quadToDof(dz, qz);
|
||||
const double wDz = quadToDofD(dz, qz);
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, dz, e) += ((gradXY[dy][dx][0] * wz) +
|
||||
(gradXY[dy][dx][1] * wz) +
|
||||
(gradXY[dy][dx][2] * wDz));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,435 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian1D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator1D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A1_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A1_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF / J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const SymmOperator1D_t oper,
|
||||
@restrict const DLocal1D_t solIn,
|
||||
@restrict DLocal1D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double grad[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuadD[i] = dofToQuadD[i];
|
||||
s_quadToDofD[i] = quadToDofD[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] += s * s_dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += grad[qx] * s_quadToDofD(dx, qx);
|
||||
}
|
||||
solOut(dx, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_2D; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const SymmOperator2D_t oper,
|
||||
@restrict const DLocal2D_t solIn,
|
||||
@restrict DLocal2D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_xDy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_grad[2 * NUM_QUAD_2D] @dim(2, NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double r_x[NUM_MAX_1D];
|
||||
@exclusive double r_y[NUM_QUAD_1D];
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_dofToQuadD[id] = dofToQuadD[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
s_quadToDofD[id] = quadToDofD[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
s_xy(dx, qy) = 0;
|
||||
s_xDy(dx, qy) = 0;
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = solIn(dx, dy, e);
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
double xDy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
xDy += r_x[dy] * s_dofToQuadD(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
s_xDy(dx, qy) = xDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX += s_xy(dx, qy) * s_dofToQuadD(qx, dx);
|
||||
gradY += s_xDy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
s_grad(0, qx, qy) = (O11 * gradX) + (O12 * gradY);
|
||||
s_grad(1, qx, qy) = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx; @inner) {
|
||||
if (qx < NUM_QUAD_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
s_xy(dy, qx) = 0;
|
||||
s_xDy(dy, qx) = 0;
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
r_x[qy] = s_grad(0, qx, qy);
|
||||
r_y[qy] = s_grad(1, qx, qy);
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double xy = 0;
|
||||
double xDy = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
xy += r_x[qy] * s_quadToDof(dy, qy);
|
||||
xDy += r_y[qy] * s_quadToDofD(dy, qy);
|
||||
}
|
||||
s_xy(dy, qx) = xy;
|
||||
s_xDy(dy, qx) = xDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += ((s_xy(dy, qx) * s_quadToDofD(dx, qx)) +
|
||||
(s_xDy(dy, qx) * s_quadToDof(dx, qx)));
|
||||
}
|
||||
solOut(dx, dy, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_3D; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const SymmOperator3D_t oper,
|
||||
@restrict const DLocal3D_t solIn,
|
||||
@restrict DLocal3D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_z[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
@shared double s_Dz[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
@shared double s_xyDz[NUM_QUAD_2D] @dim(NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_qz[NUM_QUAD_1D];
|
||||
@exclusive double r_qDz[NUM_QUAD_1D];
|
||||
@exclusive double r_dDxyz[NUM_DOFS_1D];
|
||||
@exclusive double r_dxDyz[NUM_DOFS_1D];
|
||||
@exclusive double r_dxyDz[NUM_DOFS_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_dofToQuadD[id] = dofToQuadD[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
s_quadToDofD[id] = quadToDofD[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] = 0;
|
||||
r_qDz[qz] = 0;
|
||||
}
|
||||
// Initialize our solution updates in the Z axis
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
r_dDxyz[dz] = 0;
|
||||
r_dxDyz[dz] = 0;
|
||||
r_dxyDz[dz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] += s * s_dofToQuad(qz, dz);
|
||||
r_qDz[qz] += s * s_dofToQuadD(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_z(dx, dy) = r_qz[qz];
|
||||
s_Dz(dx, dy) = r_qDz[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double Dxyz = 0;
|
||||
double xDyz = 0;
|
||||
double xyDz = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
const double wDy = s_dofToQuadD(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
const double wDx = s_dofToQuadD(qx, dx);
|
||||
const double z = s_z(dx, dy);
|
||||
const double Dz = s_Dz(dx, dy);
|
||||
Dxyz += wDx * wy * z;
|
||||
xDyz += wx * wDy * z;
|
||||
xyDz += wx * wy * Dz;
|
||||
}
|
||||
}
|
||||
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double qDxyz = (O11 * Dxyz) + (O12 * xDyz) + (O13 * xyDz);
|
||||
const double qxDyz = (O12 * Dxyz) + (O22 * xDyz) + (O23 * xyDz);
|
||||
const double qxyDz = (O13 * Dxyz) + (O23 * xDyz) + (O33 * xyDz);
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = s_quadToDof(dz, qz);
|
||||
const double wDz = s_quadToDofD(dz, qz);
|
||||
r_dDxyz[dz] += wz * qDxyz;
|
||||
r_dxDyz[dz] += wz * qxDyz;
|
||||
r_dxyDz[dz] += wDz * qxyDz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@barrier("s_z_s_Dz_sync_1");
|
||||
}
|
||||
// Iterate over xy planes to compute solution
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
// Place xy plane in shared memory
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
s_z(qx, qy) = r_dDxyz[dz];
|
||||
s_Dz(qx, qy) = r_dxDyz[dz];
|
||||
s_xyDz(qx, qy) = r_dxyDz[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Finalize solution in xy plane
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
double solZ = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = s_quadToDof(dy, qy);
|
||||
const double wDy = s_quadToDofD(dy, qy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = s_quadToDof(dx, qx);
|
||||
const double wDx = s_quadToDofD(dx, qx);
|
||||
const double Dxyz = s_z(qx, qy);
|
||||
const double xDyz = s_Dz(qx, qy);
|
||||
const double xyDz = s_xyDz(qx, qy);
|
||||
solZ += ((wDx * wy * Dxyz) +
|
||||
(wx * wDy * xDyz) +
|
||||
(wx * wy * xyDz));
|
||||
}
|
||||
}
|
||||
solOut(dx, dy, dz, e) += solZ;
|
||||
}
|
||||
}
|
||||
}
|
||||
@barrier("s_z_s_Dz_s_xyDz_sync_1");
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,167 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "url_handler.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
bool Engine::fileOpenerRegistered = false;
|
||||
|
||||
void Engine::Init(const std::string &engine_spec)
|
||||
{
|
||||
//
|
||||
// Initialize inherited fields
|
||||
//
|
||||
memory_resources[0] = NULL;
|
||||
workers_weights[0]= 1.0;
|
||||
workers_mem_res[0] = 0;
|
||||
|
||||
//
|
||||
// Initialize the OCCA engine
|
||||
//
|
||||
::occa::properties props(engine_spec);
|
||||
device = new ::occa::device[1];
|
||||
device[0].setup(props);
|
||||
|
||||
okl_path = "mfem-occa://";
|
||||
if (!fileOpenerRegistered)
|
||||
{
|
||||
// The directories from "MFEM_OCCA_OKL_PATH", if any, have the highest
|
||||
// priority.
|
||||
FileOpener *fo = new FileOpener("mfem-occa://", "MFEM_OCCA_OKL_PATH");
|
||||
// Next in priority is the source path, if it exists.
|
||||
std::string mfem_src_prefix = mfem::GetSourcePath();
|
||||
fo->AddDir(mfem_src_prefix + "/backends/occa");
|
||||
// And last in priority is the install path, if it exists.
|
||||
std::string mfem_install_prefix = mfem::GetInstallPath();
|
||||
fo->AddDir(mfem_install_prefix + "/lib/mfem/occa");
|
||||
::occa::io::fileOpener::add(fo);
|
||||
fileOpenerRegistered = true;
|
||||
}
|
||||
// std::cout << "OCCA device properties:\n" << device[0].properties();
|
||||
|
||||
force_cuda_aware_mpi = false;
|
||||
}
|
||||
|
||||
Engine::Engine(const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
Init(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine::Engine(MPI_Comm _comm, const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
comm = _comm;
|
||||
Init(engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
bool Engine::CheckEngine(const mfem::Engine *engine) const
|
||||
{
|
||||
return (engine != NULL && util::Is<const Engine>(engine) != NULL &&
|
||||
*util::As<const Engine>(engine) == *this);
|
||||
}
|
||||
|
||||
bool Engine::CheckLayout(const PLayout *layout) const
|
||||
{
|
||||
return (layout != NULL && util::Is<const Layout>(layout) != NULL &&
|
||||
layout->As<Layout>().OccaEngine() == *this);
|
||||
}
|
||||
|
||||
bool Engine::CheckArray(const PArray *array) const
|
||||
{
|
||||
return (array != NULL && util::Is<const Array>(array) != NULL &&
|
||||
array->As<Array>().OccaEngine() == *this);
|
||||
}
|
||||
|
||||
bool Engine::CheckVector(const PVector *vector) const
|
||||
{
|
||||
return (vector != NULL && util::Is<const Vector>(vector) != NULL &&
|
||||
vector->As<Vector>().OccaEngine() == *this);
|
||||
}
|
||||
|
||||
bool Engine::CheckFESpace(const PFiniteElementSpace *fes) const
|
||||
{
|
||||
return (fes != NULL && util::Is<const FiniteElementSpace>(fes) != NULL &&
|
||||
fes->As<FiniteElementSpace>().OccaEngine() == *this);
|
||||
}
|
||||
|
||||
DLayout Engine::MakeLayout(std::size_t size) const
|
||||
{
|
||||
return DLayout(new Layout(*this, size));
|
||||
}
|
||||
|
||||
DLayout Engine::MakeLayout(const mfem::Array<std::size_t> &offsets) const
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
return DLayout(new Layout(*this, offsets.Last()));
|
||||
}
|
||||
|
||||
DArray Engine::MakeArray(PLayout &layout, std::size_t item_size) const
|
||||
{
|
||||
return DArray(new Array(layout.As<Layout>(), item_size));
|
||||
}
|
||||
|
||||
DVector Engine::MakeVector(PLayout &layout, int type_id) const
|
||||
{
|
||||
MFEM_ASSERT(type_id == ScalarId<double>::value, "type_id " << type_id
|
||||
<< " is not supported");
|
||||
return DVector(new Vector(layout.As<Layout>()));
|
||||
}
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(mfem::FiniteElementSpace &fespace) const
|
||||
{
|
||||
return DFiniteElementSpace(new FiniteElementSpace(*this, fespace));
|
||||
}
|
||||
|
||||
DBilinearForm Engine::MakeBilinearForm(mfem::BilinearForm &bf) const
|
||||
{
|
||||
return DBilinearForm(new BilinearForm(*this, bf));
|
||||
}
|
||||
|
||||
void Engine::AssembleLinearForm(LinearForm &l_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const MixedBilinearForm &mbl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const NonlinearForm &nl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,144 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../base/backend.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Engine : public mfem::Engine
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// mfem::Backend *backend;
|
||||
#ifdef MFEM_USE_MPI
|
||||
// MPI_Comm comm;
|
||||
#endif
|
||||
// int num_mem_res;
|
||||
// int num_workers;
|
||||
// MemoryResource **memory_resources;
|
||||
// double *workers_weights;
|
||||
// int *workers_mem_res;
|
||||
|
||||
static bool fileOpenerRegistered;
|
||||
/// An array of OCCA devices. Currently only a single device is supported.
|
||||
::occa::device *device;
|
||||
std::string okl_path;
|
||||
bool force_cuda_aware_mpi;
|
||||
|
||||
void Init(const std::string &engine_spec);
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
Engine(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// TODO: doxygen
|
||||
Engine(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual ~Engine() { delete [] device; }
|
||||
|
||||
/**
|
||||
@name OCCA specific interface, used by other objects in the OCCA backend
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Get the associated OCCA device.
|
||||
::occa::device GetDevice(int idx = 0) const { return device[idx]; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const std::string &GetOklPath() const { return okl_path; }
|
||||
|
||||
/// OCCA device memory allocation.
|
||||
::occa::memory Alloc(std::size_t bytes) const
|
||||
{ return GetDevice().malloc(bytes); }
|
||||
|
||||
/// Two mfem::occa::Engine%s are equal if they use the same OCCA device.
|
||||
bool operator==(const Engine &other) const
|
||||
{ return GetDevice() == other.GetDevice(); }
|
||||
|
||||
/// TODO: doxygen
|
||||
bool CheckEngine(const mfem::Engine *e) const;
|
||||
|
||||
/// TODO: doxygen
|
||||
bool CheckLayout(const PLayout *layout) const;
|
||||
|
||||
/// TODO: doxygen
|
||||
bool CheckArray(const PArray *array) const;
|
||||
|
||||
/// TODO: doxygen
|
||||
bool CheckVector(const PVector *vector) const;
|
||||
|
||||
/// TODO: doxygen
|
||||
bool CheckFESpace(const PFiniteElementSpace *fes) const;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
void SetForceCudaAwareMPI(bool force = true)
|
||||
{ force_cuda_aware_mpi = force; }
|
||||
|
||||
bool GetForceCudaAwareMPI() const { return force_cuda_aware_mpi; }
|
||||
#endif
|
||||
|
||||
///@}
|
||||
// End: OCCA specific interface
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual DLayout MakeLayout(std::size_t size) const;
|
||||
virtual DLayout MakeLayout(const mfem::Array<std::size_t> &offsets) const;
|
||||
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const;
|
||||
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const;
|
||||
|
||||
virtual DFiniteElementSpace MakeFESpace(mfem::FiniteElementSpace &
|
||||
fespace) const;
|
||||
|
||||
virtual DBilinearForm MakeBilinearForm(mfem::BilinearForm &bf) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const MixedBilinearForm &mbl_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const NonlinearForm &nl_form) const;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
@@ -0,0 +1,532 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "interpolation.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#ifdef OMPI_RELEASE_VERSION
|
||||
#include <mpi-ext.h> // Check for cuda support
|
||||
#endif
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace(const Engine &e,
|
||||
mfem::FiniteElementSpace &fespace)
|
||||
: PFiniteElementSpace(e, fespace),
|
||||
e_layout(new Layout(e, 0)) // resized in SetupLocalGlobalMaps()
|
||||
{
|
||||
vdim = fespace.GetVDim();
|
||||
ordering = fespace.GetOrdering();
|
||||
|
||||
SetupLocalGlobalMaps();
|
||||
SetupOperators(); // calls virtual methods of 'fes'
|
||||
SetupKernels();
|
||||
}
|
||||
|
||||
FiniteElementSpace::~FiniteElementSpace()
|
||||
{
|
||||
delete restrictionOp;
|
||||
delete prolongationOp;
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupLocalGlobalMaps()
|
||||
{
|
||||
const int elements = fes->GetNE();
|
||||
|
||||
if (elements == 0) { return; }
|
||||
|
||||
// Assuming of finite elements are the same.
|
||||
const mfem::FiniteElement &fe = *fes->GetFE(0);
|
||||
const mfem::TensorBasisElement *el =
|
||||
dynamic_cast<const mfem::TensorBasisElement*>(&fe);
|
||||
|
||||
const mfem::Table &e2dTable = fes->GetElementToDofTable();
|
||||
const int *elementMap = e2dTable.GetJ();
|
||||
|
||||
globalDofs = fes->GetNDofs();
|
||||
localDofs = fe.GetDof();
|
||||
|
||||
e_layout->OccaResize(e2dTable.Size_of_connections());
|
||||
|
||||
int *elementDofMap = new int[localDofs];
|
||||
if (el)
|
||||
{
|
||||
::memcpy(elementDofMap,
|
||||
el->GetDofMap().GetData(),
|
||||
localDofs * sizeof(int));
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < localDofs; ++i)
|
||||
{
|
||||
elementDofMap[i] = i;
|
||||
}
|
||||
}
|
||||
|
||||
// Allocate device offsets and indices
|
||||
globalToLocalOffsets.allocate(GetDevice(),
|
||||
globalDofs + 1);
|
||||
globalToLocalIndices.allocate(GetDevice(),
|
||||
localDofs, elements);
|
||||
localToGlobalMap.allocate(GetDevice(),
|
||||
localDofs, elements);
|
||||
|
||||
int *offsets = globalToLocalOffsets.ptr();
|
||||
int *indices = globalToLocalIndices.ptr();
|
||||
int *l2gMap = localToGlobalMap.ptr();
|
||||
|
||||
// We'll be keeping a count of how many local nodes point
|
||||
// to its global dof
|
||||
for (int i = 0; i <= globalDofs; ++i)
|
||||
{
|
||||
offsets[i] = 0;
|
||||
}
|
||||
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
MFEM_ASSERT(e2dTable.RowSize(e) == localDofs, "");
|
||||
for (int d = 0; d < localDofs; ++d)
|
||||
{
|
||||
const int gid = elementMap[localDofs*e + d];
|
||||
++offsets[gid + 1];
|
||||
}
|
||||
}
|
||||
// Aggregate to find offsets for each global dof
|
||||
for (int i = 1; i <= globalDofs; ++i)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
// For each global dof, fill in all local nodes that point
|
||||
// to it
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int d = 0; d < localDofs; ++d)
|
||||
{
|
||||
const int gid = elementMap[localDofs*e + elementDofMap[d]];
|
||||
const int lid = localDofs*e + d;
|
||||
indices[offsets[gid]++] = lid;
|
||||
l2gMap[lid] = gid;
|
||||
}
|
||||
}
|
||||
// We shifted the offsets vector by 1 by using it
|
||||
// as a counter. Now we shift it back.
|
||||
for (int i = globalDofs; i > 0; --i)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
|
||||
delete [] elementDofMap;
|
||||
|
||||
globalToLocalOffsets.keepInDevice();
|
||||
globalToLocalIndices.keepInDevice();
|
||||
localToGlobalMap.keepInDevice();
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupOperators() const
|
||||
{
|
||||
// Construct 'restrictionOp' and 'prolongationOp'.
|
||||
|
||||
prolongationOp = restrictionOp = NULL;
|
||||
|
||||
const mfem::SparseMatrix *R = fes->GetRestrictionMatrix();
|
||||
const mfem::Operator *P = fes->GetProlongationMatrix();
|
||||
|
||||
if (!P) { return; }
|
||||
|
||||
Layout &v_layout = OccaVLayout();
|
||||
Layout &t_layout = OccaTrueVLayout();
|
||||
|
||||
// Assuming R has one entry per row equal to 1.
|
||||
MFEM_ASSERT(R->Finalized(), "");
|
||||
const int tdofs = R->Height();
|
||||
MFEM_ASSERT(tdofs == (int)t_layout.Size(), "");
|
||||
MFEM_ASSERT(tdofs == R->GetI()[tdofs], "");
|
||||
::occa::array<int> ltdof_ldof(GetDevice(), tdofs, R->GetJ());
|
||||
ltdof_ldof.keepInDevice();
|
||||
|
||||
restrictionOp = new RestrictionOperator(v_layout, t_layout, ltdof_ldof);
|
||||
|
||||
const mfem::SparseMatrix *pmat = dynamic_cast<const mfem::SparseMatrix*>(P);
|
||||
if (pmat)
|
||||
{
|
||||
const mfem::SparseMatrix *pmatT = Transpose(*pmat);
|
||||
|
||||
OccaSparseMatrix *occaP =
|
||||
CreateMappedSparseMatrix(t_layout, v_layout, *pmat);
|
||||
OccaSparseMatrix *occaPT =
|
||||
CreateMappedSparseMatrix(v_layout, t_layout, *pmatT);
|
||||
|
||||
prolongationOp = new ProlongationOperator(*occaP, *occaPT);
|
||||
|
||||
delete occaPT;
|
||||
delete occaP;
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
else if (fes->Conforming() && dynamic_cast<ParFiniteElementSpace*>(fes))
|
||||
{
|
||||
ParFiniteElementSpace *pfes = static_cast<ParFiniteElementSpace*>(fes);
|
||||
prolongationOp = new OccaConformingProlongation(*this, *pfes,
|
||||
ltdof_ldof.memory());
|
||||
}
|
||||
#endif
|
||||
else
|
||||
{
|
||||
prolongationOp = new ProlongationOperator(t_layout, v_layout, P);
|
||||
}
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupKernels()
|
||||
{
|
||||
::occa::properties props("defines: {"
|
||||
" TILESIZE: 256,"
|
||||
"}");
|
||||
props["defines/NUM_VDIM"] = vdim;
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) (ordering == Ordering::byVDIM);
|
||||
|
||||
::occa::device device = GetDevice();
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
globalToLocalKernel = device.buildKernel(okl_path + "fespace.okl",
|
||||
"GlobalToLocal",
|
||||
props);
|
||||
localToGlobalKernel = device.buildKernel(okl_path + "fespace.okl",
|
||||
"LocalToGlobal",
|
||||
props);
|
||||
}
|
||||
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
OccaConformingProlongation::OccaConformingProlongation(
|
||||
const FiniteElementSpace &ofes, const mfem::ParFiniteElementSpace &pfes,
|
||||
::occa::memory ltdof_ldof_)
|
||||
|
||||
: Operator(ofes.OccaTrueVLayout(), ofes.OccaVLayout()),
|
||||
shr_ltdof(ofes.OccaEngine()),
|
||||
ext_ldof(ofes.OccaEngine()),
|
||||
shr_buf(shr_ltdof.OccaLayout(), sizeof(double)),
|
||||
ext_buf(ext_ldof.OccaLayout(), sizeof(double)),
|
||||
shr_buf_offsets(NULL), ext_buf_offsets(NULL),
|
||||
ltdof_ldof(ltdof_ldof_),
|
||||
gc(pfes.GroupComm())
|
||||
{
|
||||
MFEM_ASSERT(pfes.Conforming(), "internal error");
|
||||
|
||||
const Engine &engine = ofes.OccaEngine();
|
||||
const std::string &okl_path = engine.GetOklPath();
|
||||
::occa::device device = engine.GetDevice();
|
||||
|
||||
{
|
||||
Table nbr_ltdof;
|
||||
gc.GetNeighborLTDofTable(nbr_ltdof);
|
||||
shr_ltdof.OccaResize(nbr_ltdof.Size_of_connections(), sizeof(int));
|
||||
shr_ltdof.OccaPush(nbr_ltdof.GetJ());
|
||||
shr_buf.OccaResize(&shr_ltdof.OccaLayout(), sizeof(double));
|
||||
shr_buf_offsets = nbr_ltdof.GetI();
|
||||
{
|
||||
mfem::Array<int> shr_ltdof(nbr_ltdof.GetJ(),
|
||||
nbr_ltdof.Size_of_connections());
|
||||
mfem::Array<int> unique_ltdof(shr_ltdof);
|
||||
unique_ltdof.Sort();
|
||||
unique_ltdof.Unique();
|
||||
// Note: the next loop modifies the J array of nbr_ltdof
|
||||
for (int i = 0; i < shr_ltdof.Size(); i++)
|
||||
{
|
||||
shr_ltdof[i] = unique_ltdof.FindSorted(shr_ltdof[i]);
|
||||
MFEM_ASSERT(shr_ltdof[i] != -1, "internal error");
|
||||
}
|
||||
Table unique_shr;
|
||||
Transpose(shr_ltdof, unique_shr, unique_ltdof.Size());
|
||||
|
||||
unq_ltdof = device.malloc(unique_ltdof.Size()*sizeof(int),
|
||||
unique_ltdof.GetData());
|
||||
unq_shr_i = device.malloc((unique_shr.Size()+1)*sizeof(int),
|
||||
unique_shr.GetI());
|
||||
unq_shr_j = device.malloc(unique_shr.Size_of_connections()*sizeof(int),
|
||||
unique_shr.GetJ());
|
||||
}
|
||||
delete [] nbr_ltdof.GetJ();
|
||||
nbr_ltdof.LoseData();
|
||||
}
|
||||
{
|
||||
Table nbr_ldof;
|
||||
gc.GetNeighborLDofTable(nbr_ldof);
|
||||
ext_ldof.OccaResize(nbr_ldof.Size_of_connections(), sizeof(int));
|
||||
ext_ldof.OccaPush(nbr_ldof.GetJ());
|
||||
ext_buf.OccaResize(&ext_ldof.OccaLayout(), sizeof(double));
|
||||
ext_buf_offsets = nbr_ldof.GetI();
|
||||
delete [] nbr_ldof.GetJ();
|
||||
nbr_ldof.LoseData();
|
||||
}
|
||||
host_shr_buf = NULL;
|
||||
host_ext_buf = NULL;
|
||||
// If the device has a separate memory space (e.g. CUDA device) and the MPI
|
||||
// library does not support buffers in that separate memory space, we
|
||||
// allocate separate host buffers to use for MPI communication.
|
||||
if (device.hasSeparateMemorySpace())
|
||||
{
|
||||
bool need_host_buf = true;
|
||||
if (device.mode() == "CUDA")
|
||||
{
|
||||
#ifdef MPIX_CUDA_AWARE_SUPPORT
|
||||
need_host_buf = !MPIX_Query_cuda_support();
|
||||
#endif
|
||||
if (engine.GetForceCudaAwareMPI()) { need_host_buf = false; }
|
||||
if (gc.GetGroupTopology().MyRank() == 0)
|
||||
{
|
||||
mfem::out << "\nOccaConformingProlongation: CUDA-aware MPI: "
|
||||
<< (need_host_buf ? "NO" : "YES") << "\n\n";
|
||||
}
|
||||
}
|
||||
if (need_host_buf)
|
||||
{
|
||||
host_shr_buf = new char[shr_buf.OccaMem().size()];
|
||||
host_ext_buf = new char[ext_buf.OccaMem().size()];
|
||||
}
|
||||
}
|
||||
|
||||
ExtractSubVector = device.buildKernel(okl_path + "mappings.okl",
|
||||
"ExtractSubVector",
|
||||
"defines: { TILESIZE: 256 }");
|
||||
SetSubVector = device.buildKernel(okl_path + "mappings.okl",
|
||||
"SetSubVector",
|
||||
"defines: { TILESIZE: 256 }");
|
||||
AddSubVector = device.buildKernel(okl_path + "mappings.okl",
|
||||
"AddSubVector",
|
||||
"defines: { TILESIZE: 256 }");
|
||||
|
||||
const GroupTopology >opo = gc.GetGroupTopology();
|
||||
int req_counter = 0;
|
||||
for (int nbr = 1; nbr < gtopo.GetNumNeighbors(); nbr++)
|
||||
{
|
||||
const int send_offset = shr_buf_offsets[nbr];
|
||||
const int send_size = shr_buf_offsets[nbr+1] - send_offset;
|
||||
if (send_size > 0) { req_counter++; }
|
||||
|
||||
const int recv_offset = ext_buf_offsets[nbr];
|
||||
const int recv_size = ext_buf_offsets[nbr+1] - recv_offset;
|
||||
if (recv_size > 0) { req_counter++; }
|
||||
}
|
||||
requests = new MPI_Request[req_counter];
|
||||
}
|
||||
|
||||
OccaConformingProlongation::~OccaConformingProlongation()
|
||||
{
|
||||
delete [] requests;
|
||||
delete [] host_ext_buf;
|
||||
delete [] host_shr_buf;
|
||||
delete [] ext_buf_offsets;
|
||||
delete [] shr_buf_offsets;
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::BcastBeginCopy(const ::occa::memory &src,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
// shr_buf[i] = src[shr_ltdof[i]]
|
||||
MFEM_ASSERT(item_size == sizeof(double), "");
|
||||
if (shr_ltdof.Size() == 0) { return; }
|
||||
ExtractSubVector((int)shr_ltdof.Size(), shr_ltdof.OccaMem(), src,
|
||||
shr_buf.OccaMem());
|
||||
// If the above kernel is executed asynchronously, wait for it to complete:
|
||||
shr_buf.OccaMem().getDevice().finish();
|
||||
if (host_shr_buf)
|
||||
{
|
||||
shr_buf.OccaMem().copyTo(host_shr_buf);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::BcastLocalCopy(const ::occa::memory &src,
|
||||
::occa::memory &dst,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
// dst[ltdof_ldof[i]] = src[i]
|
||||
MFEM_ASSERT(item_size == sizeof(double), "");
|
||||
if (ltdof_ldof.size<int>() == 0) { return; }
|
||||
SetSubVector((int)ltdof_ldof.size<int>(), ltdof_ldof, src, dst);
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::BcastEndCopy(::occa::memory &dst,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
// dst[ext_ldof[i]] = ext_buf[i]
|
||||
MFEM_ASSERT(item_size == sizeof(double), "");
|
||||
if (ext_ldof.Size() == 0) { return; }
|
||||
if (host_ext_buf)
|
||||
{
|
||||
ext_buf.OccaMem().copyFrom(host_ext_buf);
|
||||
}
|
||||
SetSubVector((int)ext_ldof.Size(), ext_ldof.OccaMem(),
|
||||
ext_buf.OccaMem(), dst);
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::ReduceBeginCopy(const ::occa::memory &src,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
// ext_buf[i] = src[ext_ldof[i]]
|
||||
MFEM_ASSERT(item_size == sizeof(double), "");
|
||||
if (ext_ldof.Size() == 0) { return; }
|
||||
ExtractSubVector((int)ext_ldof.Size(), ext_ldof.OccaMem(), src,
|
||||
ext_buf.OccaMem());
|
||||
// If the above kernel is executed asynchronously, wait for it to complete:
|
||||
ext_buf.OccaMem().getDevice().finish();
|
||||
if (host_ext_buf)
|
||||
{
|
||||
ext_buf.OccaMem().copyTo(host_ext_buf);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::ReduceLocalCopy(const ::occa::memory &src,
|
||||
::occa::memory &dst,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
// dst[i] = src[ltdof_ldof[i]]
|
||||
MFEM_ASSERT(item_size == sizeof(double), "");
|
||||
if (ltdof_ldof.size<int>() == 0) { return; }
|
||||
ExtractSubVector((int)ltdof_ldof.size<int>(), ltdof_ldof, src, dst);
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::ReduceEndAssemble(::occa::memory &dst,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
// dst[shr_ltdof[i]] += shr_buf[i]
|
||||
MFEM_ASSERT(item_size == sizeof(double), "");
|
||||
if (unq_ltdof.size<int>() == 0) { return; }
|
||||
if (host_shr_buf)
|
||||
{
|
||||
shr_buf.OccaMem().copyFrom(host_shr_buf);
|
||||
}
|
||||
AddSubVector((int)unq_ltdof.size<int>(), unq_ltdof, unq_shr_i, unq_shr_j,
|
||||
shr_buf.OccaMem(), dst);
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
const GroupTopology >opo = gc.GetGroupTopology();
|
||||
|
||||
BcastBeginCopy(x.OccaMem(), sizeof(double)); // copy to 'shr_buf'
|
||||
|
||||
int req_counter = 0;
|
||||
for (int nbr = 1; nbr < gtopo.GetNumNeighbors(); nbr++)
|
||||
{
|
||||
const int send_offset = shr_buf_offsets[nbr];
|
||||
const int send_size = shr_buf_offsets[nbr+1] - send_offset;
|
||||
if (send_size > 0)
|
||||
{
|
||||
void *send_buf;
|
||||
if (host_shr_buf)
|
||||
{
|
||||
send_buf = host_shr_buf + send_offset*sizeof(double);
|
||||
}
|
||||
else
|
||||
{
|
||||
send_buf = (shr_buf.OccaMem() + send_offset*sizeof(double)).ptr();
|
||||
}
|
||||
MPI_Isend(send_buf, send_size, MPI_DOUBLE, gtopo.GetNeighborRank(nbr),
|
||||
41822, gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
|
||||
const int recv_offset = ext_buf_offsets[nbr];
|
||||
const int recv_size = ext_buf_offsets[nbr+1] - recv_offset;
|
||||
if (recv_size > 0)
|
||||
{
|
||||
void *recv_buf;
|
||||
if (host_ext_buf)
|
||||
{
|
||||
recv_buf = host_ext_buf + recv_offset*sizeof(double);
|
||||
}
|
||||
else
|
||||
{
|
||||
recv_buf = (ext_buf.OccaMem() + recv_offset*sizeof(double)).ptr();
|
||||
}
|
||||
MPI_Irecv(recv_buf, recv_size, MPI_DOUBLE, gtopo.GetNeighborRank(nbr),
|
||||
41822, gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
}
|
||||
|
||||
BcastLocalCopy(x.OccaMem(), y.OccaMem(), sizeof(double));
|
||||
|
||||
MPI_Waitall(req_counter, requests, MPI_STATUSES_IGNORE);
|
||||
|
||||
BcastEndCopy(y.OccaMem(), sizeof(double)); // copy from 'ext_buf'
|
||||
}
|
||||
|
||||
void OccaConformingProlongation::MultTranspose_(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
const GroupTopology >opo = gc.GetGroupTopology();
|
||||
|
||||
ReduceBeginCopy(x.OccaMem(), sizeof(double)); // copy to 'ext_buf'
|
||||
|
||||
int req_counter = 0;
|
||||
for (int nbr = 1; nbr < gtopo.GetNumNeighbors(); nbr++)
|
||||
{
|
||||
const int send_offset = ext_buf_offsets[nbr];
|
||||
const int send_size = ext_buf_offsets[nbr+1] - send_offset;
|
||||
if (send_size > 0)
|
||||
{
|
||||
void *send_buf;
|
||||
if (host_ext_buf)
|
||||
{
|
||||
send_buf = host_ext_buf + send_offset*sizeof(double);
|
||||
}
|
||||
else
|
||||
{
|
||||
send_buf = (ext_buf.OccaMem() + send_offset*sizeof(double)).ptr();
|
||||
}
|
||||
MPI_Isend(send_buf, send_size, MPI_DOUBLE, gtopo.GetNeighborRank(nbr),
|
||||
41823, gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
|
||||
const int recv_offset = shr_buf_offsets[nbr];
|
||||
const int recv_size = shr_buf_offsets[nbr+1] - recv_offset;
|
||||
if (recv_size > 0)
|
||||
{
|
||||
void *recv_buf;
|
||||
if (host_shr_buf)
|
||||
{
|
||||
recv_buf = host_shr_buf + recv_offset*sizeof(double);
|
||||
}
|
||||
else
|
||||
{
|
||||
recv_buf = (shr_buf.OccaMem() + recv_offset*sizeof(double)).ptr();
|
||||
}
|
||||
MPI_Irecv(recv_buf, recv_size, MPI_DOUBLE, gtopo.GetNeighborRank(nbr),
|
||||
41823, gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
}
|
||||
|
||||
ReduceLocalCopy(x.OccaMem(), y.OccaMem(), sizeof(double));
|
||||
|
||||
MPI_Waitall(req_counter, requests, MPI_STATUSES_IGNORE);
|
||||
|
||||
ReduceEndAssemble(y.OccaMem(), sizeof(double)); // assemble from 'shr_buf'
|
||||
}
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,210 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
#define MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "operator.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class FiniteElementSpace : public mfem::PFiniteElementSpace
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::FiniteElementSpace *fes;
|
||||
|
||||
SharedPtr<Layout> e_layout;
|
||||
|
||||
::occa::array<int> globalToLocalOffsets;
|
||||
::occa::array<int> globalToLocalIndices;
|
||||
::occa::array<int> localToGlobalMap;
|
||||
::occa::kernel globalToLocalKernel, localToGlobalKernel;
|
||||
|
||||
mfem::Ordering::Type ordering;
|
||||
|
||||
int globalDofs, localDofs;
|
||||
int vdim;
|
||||
|
||||
mutable Operator *prolongationOp, *restrictionOp;
|
||||
|
||||
void SetupLocalGlobalMaps();
|
||||
void SetupOperators() const; // calls virtual methods of 'fes' !!!
|
||||
void SetupKernels();
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
FiniteElementSpace(const Engine &e, mfem::FiniteElementSpace &fespace);
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~FiniteElementSpace();
|
||||
|
||||
/// TODO: doxygen
|
||||
const Engine &OccaEngine() const { return engine->As<Engine>(); }
|
||||
|
||||
/// TODO: doxygen
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return OccaEngine().GetDevice(idx); }
|
||||
|
||||
mfem::Mesh* GetMesh() const { return fes->GetMesh(); }
|
||||
|
||||
Layout &OccaVLayout() const
|
||||
{ return *fes->GetVLayout().As<Layout>(); }
|
||||
|
||||
Layout &OccaTrueVLayout() const
|
||||
{ return *fes->GetTrueVLayout().As<Layout>(); }
|
||||
|
||||
Layout &OccaEVLayout() { return *e_layout; }
|
||||
|
||||
bool hasTensorBasis() const
|
||||
{ return dynamic_cast<const mfem::TensorBasisElement*>(fes->GetFE(0)); }
|
||||
|
||||
mfem::Ordering::Type GetOrdering() const { return ordering; }
|
||||
|
||||
int GetGlobalDofs() const { return globalDofs; }
|
||||
int GetLocalDofs() const { return localDofs; }
|
||||
|
||||
int GetDim() const { return fes->GetMesh()->Dimension(); }
|
||||
int GetVDim() const { return vdim; }
|
||||
|
||||
int GetVSize() const { return globalDofs * vdim; }
|
||||
int GetTrueVSize() const { return fes->GetTrueVSize(); }
|
||||
int GetGlobalVSize() const { return globalDofs*vdim; /* FIXME: MPI */ }
|
||||
int GetGlobalTrueVSize() const { return fes->GetTrueVSize(); }
|
||||
|
||||
int GetNE() const { return fes->GetNE(); }
|
||||
|
||||
const mfem::FiniteElementCollection *FEColl() const
|
||||
{ return fes->FEColl(); }
|
||||
const mfem::FiniteElement *GetFE(const int idx) const
|
||||
{ return fes->GetFE(idx); }
|
||||
|
||||
virtual const mfem::Operator *GetProlongationOperator() const
|
||||
{ return prolongationOp; }
|
||||
|
||||
virtual const mfem::Operator *GetRestrictionOperator() const
|
||||
{ return restrictionOp; }
|
||||
|
||||
virtual const mfem::Operator *GetInterpolationOperator(
|
||||
const mfem::QuadratureSpace &qspace) const
|
||||
{ return NULL; /* FIXME */ }
|
||||
|
||||
virtual const mfem::Operator *GetGradientOperator(
|
||||
const mfem::QuadratureSpace &qspace) const
|
||||
{ return NULL; /* FIXME */ }
|
||||
|
||||
const ::occa::array<int> GetLocalToGlobalMap() const
|
||||
{ return localToGlobalMap; }
|
||||
|
||||
/// L-vector to E-vector
|
||||
void GlobalToLocal(const Vector &globalVec, Vector &localVec) const
|
||||
{
|
||||
globalToLocalKernel(globalDofs,
|
||||
localDofs * fes->GetNE(),
|
||||
globalToLocalOffsets,
|
||||
globalToLocalIndices,
|
||||
globalVec.OccaMem(), localVec.OccaMem());
|
||||
}
|
||||
|
||||
/// E-vector to L-vector, transpose of GlobalToLocal
|
||||
void LocalToGlobal(const Vector &localVec, Vector &globalVec) const
|
||||
{
|
||||
localToGlobalKernel(globalDofs,
|
||||
localDofs * fes->GetNE(),
|
||||
globalToLocalOffsets,
|
||||
globalToLocalIndices,
|
||||
localVec.OccaMem(), globalVec.OccaMem());
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
/// OCCA version of mfem::ConformingProlongationOperator
|
||||
class OccaConformingProlongation : public Operator
|
||||
{
|
||||
protected:
|
||||
// size(shr_buf)=size(shr_ltdof)
|
||||
// size(ext_buf)=size(ext_ldof)
|
||||
Array shr_ltdof, ext_ldof;
|
||||
mutable Array shr_buf, ext_buf;
|
||||
mutable char *host_shr_buf, *host_ext_buf;
|
||||
// Offsets into {shr,ext}_buf; size is num. neighbors, i.e.
|
||||
// gc.GetGroupTopology().GetNumNeighbors():
|
||||
int *shr_buf_offsets, *ext_buf_offsets;
|
||||
|
||||
::occa::memory ltdof_ldof; // shared with the restriction operator
|
||||
|
||||
::occa::memory unq_ltdof; // enumeration of the unique ltdofs in shr_ltdof
|
||||
::occa::memory unq_shr_i, unq_shr_j;
|
||||
|
||||
::occa::kernel ExtractSubVector, SetSubVector, AddSubVector;
|
||||
|
||||
MPI_Request *requests;
|
||||
|
||||
const GroupCommunicator &gc;
|
||||
|
||||
// Kernel: copy ltdofs from 'src' to 'shr_buf' - prepare for send.
|
||||
// shr_buf[i] = src[shr_ltdof[i]]
|
||||
void BcastBeginCopy(const ::occa::memory &src, std::size_t item_size) const;
|
||||
// Kernel: copy ltdofs from 'src' to ldofs in 'dst'.
|
||||
// dst[ltdof_ldof[i]] = src[i]
|
||||
void BcastLocalCopy(const ::occa::memory &src, ::occa::memory &dst,
|
||||
std::size_t item_size) const;
|
||||
// Kernel: copy ext. dofs from 'ext_buf' to 'dst' - after recv.
|
||||
// dst[ext_ldof[i]] = ext_buf[i]
|
||||
void BcastEndCopy(::occa::memory &dst, std::size_t item_size) const;
|
||||
|
||||
// Kernel: copy ext. dofs from 'src' to 'ext_buf' - prepare for send.
|
||||
// ext_buf[i] = src[ext_ldof[i]]
|
||||
void ReduceBeginCopy(const ::occa::memory &src, std::size_t item_size) const;
|
||||
// Kernel: copy owned ldofs from 'src' to ltdofs in 'dst'.
|
||||
// dst[i] = src[ltdof_ldof[i]]
|
||||
void ReduceLocalCopy(const ::occa::memory &src, ::occa::memory &dst,
|
||||
std::size_t item_size) const;
|
||||
// Kernel: assemble dofs from 'shr_buf' into to 'dst' - after recv.
|
||||
// dst[shr_ltdof[i]] += shr_buf[i]
|
||||
void ReduceEndAssemble(::occa::memory &dst, std::size_t item_size) const;
|
||||
|
||||
public:
|
||||
OccaConformingProlongation(const FiniteElementSpace &ofes,
|
||||
const mfem::ParFiniteElementSpace &pfes,
|
||||
::occa::memory ltdof_ldof_);
|
||||
|
||||
virtual ~OccaConformingProlongation();
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
@@ -0,0 +1,67 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over entries
|
||||
================================================
|
||||
*/
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double *Global_t @dim(NUM_VDIM, globalEntries);
|
||||
typedef double *Local_t @dim(NUM_VDIM, localEntries);
|
||||
#else
|
||||
typedef double *Global_t @dim(NUM_VDIM, globalEntries) @dimOrder(1, 0);
|
||||
typedef double *Local_t @dim(NUM_VDIM, localEntries) @dimOrder(1, 0);
|
||||
#endif
|
||||
|
||||
@kernel void GlobalToLocal(const int globalEntries,
|
||||
const int localEntries,
|
||||
@restrict const int * offsets,
|
||||
@restrict const int * indices,
|
||||
@restrict const Global_t globalX,
|
||||
@restrict Local_t localX) {
|
||||
|
||||
for (int i = 0; i < globalEntries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < globalEntries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double dofValue = globalX(v, i);
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
localX(v, indices[j]) = dofValue;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void LocalToGlobal(const int globalEntries,
|
||||
const int localEntries,
|
||||
@restrict const int * offsets,
|
||||
@restrict const int * indices,
|
||||
@restrict const Local_t localX,
|
||||
@restrict Global_t globalX) {
|
||||
|
||||
for (int i = 0; i < globalEntries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < globalEntries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double dofValue = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
dofValue += localX(v, indices[j]);
|
||||
}
|
||||
globalX(v, i) = dofValue;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,181 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef STORE_JACOBIAN
|
||||
# define STORE_JACOBIAN 1
|
||||
#endif
|
||||
|
||||
#ifndef STORE_JACOBIAN_INV
|
||||
# define STORE_JACOBIAN_INV 1
|
||||
#endif
|
||||
|
||||
#ifndef STORE_JACOBIAN_DET
|
||||
# define STORE_JACOBIAN_DET 1
|
||||
#endif
|
||||
|
||||
typedef double* Local1D_t @dim(1, NUM_DOFS, numElements);
|
||||
typedef double* Local2D_t @dim(2, NUM_DOFS, numElements);
|
||||
typedef double* Local3D_t @dim(3, NUM_DOFS, numElements);
|
||||
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
|
||||
typedef double* DofToQuadD1D_t @dim(NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD2D_t @dim(2, NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD3D_t @dim(3, NUM_QUAD, NUM_DOFS);
|
||||
|
||||
typedef double* Jacobian1D_t @dim(NUM_QUAD, numElements);
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD, numElements);
|
||||
|
||||
@kernel void InitGeometryInfo1D(const int numElements,
|
||||
@restrict const DofToQuadD1D_t dofToQuadD,
|
||||
@restrict const Local1D_t nodes,
|
||||
@restrict Jacobian1D_t J,
|
||||
@restrict Jacobian1D_t invJ,
|
||||
@restrict QLocal_t detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[NUM_DOFS];
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes[d] = nodes(0, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(q, d);
|
||||
J11 += wx * s_nodes[d];
|
||||
}
|
||||
#if STORE_JACOBIAN
|
||||
J(q, e) = J11;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
invJ(q, e) = 1.0 / J11;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = J11;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void InitGeometryInfo2D(const int numElements,
|
||||
@restrict const DofToQuadD2D_t dofToQuadD,
|
||||
@restrict const Local2D_t nodes,
|
||||
@restrict Jacobian2D_t J,
|
||||
@restrict Jacobian2D_t invJ,
|
||||
@restrict QLocal_t detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[2 * NUM_DOFS] @dim(2, NUM_DOFS);
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes(0, d) = nodes(0, d, e);
|
||||
s_nodes(1, d) = nodes(1, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0, J12 = 0;
|
||||
double J21 = 0, J22 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(0, q, d);
|
||||
const double wy = dofToQuadD(1, q, d);
|
||||
const double x = s_nodes(0, d);
|
||||
const double y = s_nodes(1, d);
|
||||
J11 += (wx * x); J12 += (wx * y);
|
||||
J21 += (wy * x); J22 += (wy * y);
|
||||
}
|
||||
#if STORE_JACOBIAN_INV || STORE_JACOBIAN_DET
|
||||
const double r_detJ = (J11 * J22) - (J12 * J21);
|
||||
#endif
|
||||
#if STORE_JACOBIAN
|
||||
J(0, 0, q, e) = J11; J(1, 0, q, e) = J12;
|
||||
J(0, 1, q, e) = J21; J(1, 1, q, e) = J22;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
const double r_idetJ = 1.0 / r_detJ;
|
||||
invJ(0, 0, q, e) = J22 * r_idetJ;
|
||||
invJ(1, 0, q, e) = -J12 * r_idetJ;
|
||||
|
||||
invJ(0, 1, q, e) = -J21 * r_idetJ;
|
||||
invJ(1, 1, q, e) = J11 * r_idetJ;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = r_detJ;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void InitGeometryInfo3D(const int numElements,
|
||||
@restrict const DofToQuadD3D_t dofToQuadD,
|
||||
@restrict const Local3D_t nodes,
|
||||
@restrict Jacobian3D_t J,
|
||||
@restrict Jacobian3D_t invJ,
|
||||
@restrict QLocal_t detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[3 * NUM_DOFS] @dim(3, NUM_DOFS);
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes(0, d) = nodes(0, d, e);
|
||||
s_nodes(1, d) = nodes(1, d, e);
|
||||
s_nodes(2, d) = nodes(2, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0, J12 = 0, J13 = 0;
|
||||
double J21 = 0, J22 = 0, J23 = 0;
|
||||
double J31 = 0, J32 = 0, J33 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(0, q, d);
|
||||
const double wy = dofToQuadD(1, q, d);
|
||||
const double wz = dofToQuadD(2, q, d);
|
||||
const double x = s_nodes(0, d);
|
||||
const double y = s_nodes(1, d);
|
||||
const double z = s_nodes(2, d);
|
||||
J11 += (wx * x); J12 += (wx * y); J13 += (wx * z);
|
||||
J21 += (wy * x); J22 += (wy * y); J23 += (wy * z);
|
||||
J31 += (wz * x); J32 += (wz * y); J33 += (wz * z);
|
||||
}
|
||||
#if STORE_JACOBIAN_INV || STORE_JACOBIAN_DET
|
||||
const double r_detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
#endif
|
||||
#if STORE_JACOBIAN
|
||||
J(0, 0, q, e) = J11; J(1, 0, q, e) = J12; J(2, 0, q, e) = J13;
|
||||
J(0, 1, q, e) = J21; J(1, 1, q, e) = J22; J(2, 1, q, e) = J23;
|
||||
J(0, 2, q, e) = J31; J(1, 2, q, e) = J32; J(2, 2, q, e) = J33;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
const double r_idetJ = 1.0 / r_detJ;
|
||||
invJ(0, 0, q, e) = r_idetJ * ((J22 * J33) - (J23 * J32));
|
||||
invJ(1, 0, q, e) = r_idetJ * ((J32 * J13) - (J33 * J12));
|
||||
invJ(2, 0, q, e) = r_idetJ * ((J12 * J23) - (J13 * J22));
|
||||
|
||||
invJ(0, 1, q, e) = r_idetJ * ((J23 * J31) - (J21 * J33));
|
||||
invJ(1, 1, q, e) = r_idetJ * ((J33 * J11) - (J31 * J13));
|
||||
invJ(2, 1, q, e) = r_idetJ * ((J13 * J21) - (J11 * J23));
|
||||
|
||||
invJ(0, 2, q, e) = r_idetJ * ((J21 * J32) - (J22 * J31));
|
||||
invJ(1, 2, q, e) = r_idetJ * ((J31 * J12) - (J32 * J11));
|
||||
invJ(2, 2, q, e) = r_idetJ * ((J11 * J22) - (J12 * J21));
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = r_detJ;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,86 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "gridfunc.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
std::map<std::string, ::occa::kernel> gridFunctionKernels;
|
||||
|
||||
::occa::kernel GetGridFunctionKernel(::occa::device device,
|
||||
FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir)
|
||||
{
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
const FiniteElement &fe = *(fespace.GetFE(0));
|
||||
const int dim = fe.GetDim();
|
||||
const int vdim = fespace.GetVDim();
|
||||
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "FEColl : " << fespace.FEColl()->Name()
|
||||
<< "Quad: " << numQuad
|
||||
<< "Dim: " << dim
|
||||
<< "VDim: " << vdim;
|
||||
std::string hash = ss.str();
|
||||
|
||||
// Kernel defines
|
||||
::occa::properties props;
|
||||
props["defines/NUM_VDIM"] = vdim;
|
||||
|
||||
SetProperties(fespace, ir, props);
|
||||
|
||||
::occa::kernel kernel = gridFunctionKernels[hash];
|
||||
if (!kernel.isInitialized())
|
||||
{
|
||||
const std::string &okl_path = fespace.OccaEngine().GetOklPath();
|
||||
kernel = device.buildKernel(okl_path + "gridfunc.okl",
|
||||
stringWithDim("GridFuncToQuad", dim),
|
||||
props);
|
||||
}
|
||||
return kernel;
|
||||
}
|
||||
|
||||
void ToQuad(const IntegrationRule &ir, FiniteElementSpace &fespace, Vector &gf,
|
||||
Vector &quadValues)
|
||||
{
|
||||
const Engine &engine = fespace.OccaEngine();
|
||||
::occa::device device = engine.GetDevice();
|
||||
|
||||
OccaDofQuadMaps &maps = OccaDofQuadMaps::Get(device, fespace, ir);
|
||||
|
||||
const int elements = fespace.GetNE();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
quadValues.OccaResize(numQuad * elements, sizeof(double));
|
||||
|
||||
::occa::kernel g2qKernel = GetGridFunctionKernel(device, fespace, ir);
|
||||
g2qKernel(elements,
|
||||
maps.dofToQuad,
|
||||
fespace.GetLocalToGlobalMap(),
|
||||
gf.OccaMem(),
|
||||
quadValues.OccaMem());
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,55 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
#define MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class IntegrationRule;
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
// TODO: make this object part of the backend or the engine.
|
||||
extern std::map<std::string, ::occa::kernel> gridFunctionKernels;
|
||||
|
||||
// TODO: make this a method of the backend or the engine.
|
||||
::occa::kernel GetGridFunctionKernel(::occa::device device,
|
||||
FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir);
|
||||
|
||||
// ToQuad version without the deprecated class.
|
||||
//
|
||||
// FIXME: This is the action of a global B matrix, mapping L-vector to Q-vector,
|
||||
// so it should be made into an operator that can be constructed by the
|
||||
// FE space class. A batched version, where only a subset of the elements
|
||||
// are processed should be defined as well.
|
||||
//
|
||||
// The abstract operator construction method in the FE space class is:
|
||||
// PFiniteElementSpace::GetInterpolationOperator(...)
|
||||
void ToQuad(const IntegrationRule &ir, FiniteElementSpace &ofespace, Vector &gf,
|
||||
Vector &quadValues);
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
@@ -0,0 +1,26 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#ifdef USING_TENSOR_OPS
|
||||
# ifdef OCCA_USING_CPU
|
||||
# include "mfem-occa://gridfunc/tensor/cpu.okl"
|
||||
# else
|
||||
# include "mfem-occa://gridfunc/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
#else
|
||||
# ifdef OCCA_USING_CPU
|
||||
# include "mfem-occa://gridfunc/simplex/cpu.okl"
|
||||
# else
|
||||
# include "mfem-occa://gridfunc/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,63 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal_t out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
double r_out = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_out += r_gf * dofToQuad(d, q);
|
||||
}
|
||||
out(v, d, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal_t out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
double r_out = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_out += r_gf * dofToQuad(d, q);
|
||||
}
|
||||
out(v, d, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,79 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal_t out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gf[NUM_VDIM][NUM_DOFS];
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff; @inner) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
s_gf[v][d] = gf[v + gid*NUM_VDIM]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double r_out = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_out += s_gf[v][d] * dofToQuad(d, q);
|
||||
}
|
||||
out(v, q, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal_t out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gf[NUM_VDIM][NUM_DOFS];
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff; @inner) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
s_gf[v][d] = gf[v + gid*NUM_VDIM]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double r_out = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_out += s_gf[v][d] * dofToQuad(d, q);
|
||||
}
|
||||
out(v, q, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,188 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void GridFuncToQuad1D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap1D_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal1D_t out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_out[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[v][qx] = 0;
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[v][qx] += r_gf * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, e) = r_out[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap2D_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal2D_t out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double out_xy[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double out_x[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
out_x[v][qy] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, dy, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
out_x[v][qy] += r_gf * dofToQuad(qy, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double d2q = dofToQuad(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] += d2q * out_x[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, qy, e) = out_xy[v][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap3D_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QVLocal3D_t out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double out_xyz[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xyz[v][qz][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double out_xy[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double out_x[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_x[v][qx] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, dy, dz, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_x[v][qx] += r_gf * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] += wy * out_x[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xyz[v][qz][qy][qx] += wz * out_xy[v][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, qy, qz, e) = out_xyz[v][qz][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,183 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void GridFuncToQuad1D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap1D_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QLocal1D_t out) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@exclusive double r_out[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuad[i] = dofToQuad[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double r_gf = gf[l2gMap(dx, e)];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[qx] += r_gf * s_dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out(qx, e) = r_out[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap2D_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QLocal2D_t out) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
double r_x[NUM_DOFS_1D];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = gf[l2gMap(dx, dy, e)];
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double val = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
val += s_xy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
out(qx, qy, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DLocalMap3D_t l2gMap,
|
||||
@restrict const double * gf,
|
||||
@restrict QLocal3D_t out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_z[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_qz[NUM_QUAD_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double val = gf[l2gMap(dx, dy, dz, e)];
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] += val * s_dofToQuad(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_z(dx, dy) = r_qz[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double val = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
val += wx * wy * s_z(dx, dy);
|
||||
}
|
||||
}
|
||||
out(qx, qy, qz, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,119 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "interpolation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
RestrictionOperator::RestrictionOperator(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> indices)
|
||||
: Operator(in_layout, out_layout)
|
||||
{
|
||||
trueIndices = indices;
|
||||
|
||||
::occa::device device = in_layout.OccaEngine().GetDevice();
|
||||
const std::string &okl_path = in_layout.OccaEngine().GetOklPath();
|
||||
multOp = device.buildKernel(okl_path + "mappings.okl",
|
||||
"ExtractSubVector",
|
||||
"defines: { TILESIZE: 256 }");
|
||||
|
||||
multTransposeOp = device.buildKernel(okl_path + "mappings.okl",
|
||||
"SetSubVector",
|
||||
"defines: { TILESIZE: 256 }");
|
||||
}
|
||||
|
||||
void RestrictionOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
// y[i] = x[trueIndices[i]]
|
||||
multOp(height, trueIndices, x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
void RestrictionOperator::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
y.OccaFill<double>(0.0);
|
||||
// y[trueIndices[i]] = x[i]
|
||||
multTransposeOp(height, trueIndices, x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
ProlongationOperator::ProlongationOperator(OccaSparseMatrix &multOp_,
|
||||
OccaSparseMatrix &multTransposeOp_)
|
||||
: Operator(multOp_),
|
||||
pmat(NULL),
|
||||
multOp(multOp_),
|
||||
multTransposeOp(multTransposeOp_)
|
||||
{ }
|
||||
|
||||
ProlongationOperator::ProlongationOperator(Layout &in_layout,
|
||||
Layout &out_layout,
|
||||
const mfem::Operator *pmat_)
|
||||
: Operator(in_layout, out_layout),
|
||||
pmat(pmat_),
|
||||
multOp(*this),
|
||||
multTransposeOp(*this)
|
||||
{ }
|
||||
|
||||
void ProlongationOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(pmat == NULL, "");
|
||||
multOp.Mult_(x, y);
|
||||
}
|
||||
|
||||
void ProlongationOperator::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(pmat == NULL, "");
|
||||
multTransposeOp.Mult_(x, y);
|
||||
}
|
||||
|
||||
void ProlongationOperator::Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
if (pmat)
|
||||
{
|
||||
// FIXME: create an OCCA version of 'pmat'
|
||||
x.Pull();
|
||||
y.Pull(false);
|
||||
pmat->Mult(x, y);
|
||||
y.Push();
|
||||
}
|
||||
else
|
||||
{
|
||||
multOp.Mult(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void ProlongationOperator::MultTranspose(const mfem::Vector &x,
|
||||
mfem::Vector &y) const
|
||||
{
|
||||
if (pmat)
|
||||
{
|
||||
// FIXME: create an OCCA version of 'pmat'
|
||||
x.Pull();
|
||||
y.Pull(false);
|
||||
pmat->MultTranspose(x, y);
|
||||
y.Push();
|
||||
}
|
||||
else
|
||||
{
|
||||
multTransposeOp.Mult(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,73 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
#define MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "vector.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "sparsemat.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class RestrictionOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
::occa::array<int> trueIndices; // ldof = trueIndices[ltdof]
|
||||
::occa::kernel multOp, multTransposeOp;
|
||||
|
||||
public:
|
||||
RestrictionOperator(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> indices);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
class ProlongationOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
const mfem::Operator *pmat;
|
||||
OccaSparseMatrix multOp, multTransposeOp;
|
||||
|
||||
public:
|
||||
ProlongationOperator(OccaSparseMatrix &multOp_,
|
||||
OccaSparseMatrix &multTransposeOp_);
|
||||
|
||||
ProlongationOperator(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::Operator *pmat_);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
|
||||
// overrides
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const;
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const;
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
void Layout::Resize(std::size_t new_size)
|
||||
{
|
||||
size = new_size;
|
||||
}
|
||||
|
||||
void Layout::Resize(const Array<std::size_t> &offsets)
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
size = offsets.Last();
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,67 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../base/layout.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Layout : public PLayout
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// std::size_t size;
|
||||
|
||||
public:
|
||||
Layout(const Engine &e, std::size_t s = 0) : PLayout(e, s) { }
|
||||
|
||||
const Engine &OccaEngine() const
|
||||
{ return *static_cast<const Engine *>(engine.Get()); }
|
||||
|
||||
void OccaResize(std::size_t new_size) { size = new_size; }
|
||||
|
||||
virtual ~Layout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size);
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
@@ -0,0 +1,76 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over entries
|
||||
================================================
|
||||
*/
|
||||
|
||||
@kernel void ExtractSubVector(const int entries,
|
||||
@restrict const int *indices,
|
||||
@restrict const double *in,
|
||||
@restrict double *out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
out[i] = in[indices[i]]; // indices can be repeated
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void SetSubVector(const int entries,
|
||||
@restrict const int *indices,
|
||||
@restrict const double *in,
|
||||
@restrict double *out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
out[indices[i]] = in[i]; // indices CANNOT be repeated
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void AddSubVector(const int num_unique_dst_indices,
|
||||
@restrict const int *unique_dst_indices,
|
||||
@restrict const int *unique_to_src_offsets,
|
||||
@restrict const int *unique_to_src_indices,
|
||||
@restrict const double *src,
|
||||
@restrict double *dst) {
|
||||
|
||||
for (int i = 0; i < num_unique_dst_indices; ++i;
|
||||
@tile(TILESIZE, @outer, @inner)) {
|
||||
|
||||
if (i < num_unique_dst_indices) {
|
||||
const int dst_idx = unique_dst_indices[i];
|
||||
double sum = dst[dst_idx];
|
||||
const int end = unique_to_src_offsets[i+1];
|
||||
for (int j = unique_to_src_offsets[i]; j != end; ++j) {
|
||||
sum += src[unique_to_src_indices[j]];
|
||||
}
|
||||
dst[dst_idx] = sum;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MapSubVector(const int entries,
|
||||
@restrict const int *indices,
|
||||
@restrict const double *in,
|
||||
@restrict double *out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int fromIdx = indices[2*i + 0]; // fromIdx indices can be repeated
|
||||
const int toIdx = indices[2*i + 1]; // toIdx indices CANNOT be repeated
|
||||
out[toIdx] = in[fromIdx];
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,122 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * ((J11 * J22) - (J21 * J12));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD2D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD2D_t quadToDofD,
|
||||
@restrict const QLocal_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double s = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
s += solIn(d, e) * quadToDof(d, q);
|
||||
}
|
||||
s *= oper(q, e);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += (s * quadToDof(d, q));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * detJ;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD3D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD3D_t quadToDofD,
|
||||
@restrict const QLocal_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double s = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
s += solIn(d, e) * quadToDof(d, q);
|
||||
}
|
||||
s *= oper(q, e);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += (s * quadToDof(d, q));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,129 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * ((J11 * J22) - (J21 * J12));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD2D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD2D_t quadToDofD,
|
||||
@restrict const QLocal_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_sol[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
double s = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
s += solIn(d, e) * dofToQuad(d, q);
|
||||
}
|
||||
s_sol[q] = s * oper(q, e);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_sol += (s_sol[q] * quadToDof(d, q));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * detJ;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuadD3D_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDofD3D_t quadToDofD,
|
||||
@restrict const QLocal_t oper,
|
||||
@restrict const DLocal_t solIn,
|
||||
@restrict DLocal_t solOut) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_sol[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
double s = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
s += solIn(d, e) * dofToQuad(d, q);
|
||||
}
|
||||
s_sol[q] = s * oper(q, e);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_sol += (s_sol[q] * quadToDof(d, q));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,281 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian1D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
const double detJ = J(q, e);
|
||||
oper(q, e) = quadWeights[q] * COEFF * detJ;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const QLocal1D_t oper,
|
||||
@restrict const DLocal1D_t solIn,
|
||||
@restrict DLocal1D_t solOut) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double sol_x[NUM_QUAD_1D];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_x[qx] = 0;
|
||||
}
|
||||
// sol_x{qx} = dofToQuad{qx,dx} * sol{dx}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_x[qx] += s * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
// sol_x{q} *= oper{q}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_x[qx] *= oper(qx, e);
|
||||
}
|
||||
// sol{dx} = quadToDof{dx,qx} * sol_x{qx}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, e) += sol_x[qx] * quadToDof(dx, qx);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_2D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
const double detJ = ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * detJ;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const QLocal2D_t oper,
|
||||
@restrict const DLocal2D_t solIn,
|
||||
@restrict DLocal2D_t solOut) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double sol_xy[NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xy[qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double sol_x[NUM_QUAD_1D];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
sol_x[qy] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_x[qx] += dofToQuad(qx, dx) * s;
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double d2q = dofToQuad(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xy[qy][qx] += d2q * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xy[qy][qx] *= oper(qx, qy, e);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double sol_x[NUM_DOFS_1D];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
sol_x[dx] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double s = sol_xy[qy][qx];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
sol_x[dx] += quadToDof(dx, qx) * s;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double q2d = quadToDof(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, e) += q2d * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
@restrict const double * quadWeights,
|
||||
@restrict const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
@restrict QLocal_t oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_3D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * detJ;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const QLocal3D_t oper,
|
||||
@restrict const DLocal3D_t solIn,
|
||||
@restrict DLocal3D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double sol_xyz[NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xyz[qz][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double sol_xy[NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xy[qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double sol_x[NUM_QUAD_1D];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_x[qx] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_x[qx] += dofToQuad(qx, dx) * s;
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xy[qy][qx] += wy * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xyz[qz][qy][qx] += wz * sol_xy[qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
sol_xyz[qz][qy][qx] *= oper(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
double sol_xy[NUM_DOFS_1D][NUM_DOFS_1D];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
sol_xy[dy][dx] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double sol_x[NUM_DOFS_1D];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
sol_x[dx] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double s = sol_xyz[qz][qy][qx];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
sol_x[dx] += quadToDof(dx, qx) * s;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
sol_xy[dy][dx] += wy * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = quadToDof(dz, qz);
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, dz, e) += wz * sol_xy[dy][dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,341 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian1D_t J,
|
||||
COEFF_ARGS
|
||||
QLocal_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A1_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A1_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF * J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const QLocal1D_t oper,
|
||||
@restrict const DLocal1D_t solIn,
|
||||
@restrict DLocal1D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double r_sol[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuad[i] = dofToQuad[i];
|
||||
s_quadToDof[i] = quadToDof[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_sol[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_sol[qx] += s * s_dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_sol[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += r_sol[qx] * s_quadToDof(dx, qx);
|
||||
}
|
||||
solOut(dx, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
QLocal_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_2D; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * ((J11 * J22) - (J21 * J12));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const QLocal2D_t oper,
|
||||
@restrict const DLocal2D_t solIn,
|
||||
@restrict DLocal2D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in @shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_xy2[NUM_QUAD_2D] @dim(NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double r_x[NUM_MAX_1D];
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
s_xy(dx, qy) = 0;
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = solIn(dx, dy, e);
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double s = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
s += s_xy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
s_xy2(qx, qy) = s * oper(qx, qy, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if (qx < NUM_QUAD_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
s_xy(dy, qx) = 0;
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
r_x[qy] = s_xy2(qx, qy);
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double s = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
s += r_x[qy] * s_quadToDof(dy, qy);
|
||||
}
|
||||
s_xy(dy, qx) = s;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += (s_xy(dy, qx) * s_quadToDof(dx, qx));
|
||||
}
|
||||
solOut(dx, dy, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
QLocal_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_3D; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
oper(q, e) = quadWeights[q] * COEFF * detJ;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
@restrict const DofToQuad_t dofToQuad,
|
||||
@restrict const DofToQuad_t dofToQuadD,
|
||||
@restrict const QuadToDof_t quadToDof,
|
||||
@restrict const QuadToDof_t quadToDofD,
|
||||
@restrict const QLocal3D_t oper,
|
||||
@restrict const DLocal3D_t solIn,
|
||||
@restrict DLocal3D_t solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in @shared memory
|
||||
@shared double s_xy[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_z[NUM_QUAD_1D];
|
||||
@exclusive double r_z2[NUM_DOFS_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_z[qz] = 0;
|
||||
}
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
r_z2[dz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_z[qz] += s * s_dofToQuad(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_xy(dx, dy) = r_z[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double s = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
s += wx * wy * s_xy(dx, dy);
|
||||
}
|
||||
}
|
||||
|
||||
s *= oper(qx, qy, qz, e);
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = s_quadToDof(dz, qz);
|
||||
r_z2[dz] += wz * s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@barrier("s_xy_sync_1");
|
||||
}
|
||||
// Iterate over xy planes to compute solution
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
// Place xy plane in @shared memory
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
s_xy(qx, qy) = r_z2[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Finalize solution in xy plane
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
double solZ = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = s_quadToDof(dy, qy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = s_quadToDof(dx, qx);
|
||||
solZ += wx * wy * s_xy(qx, qy);
|
||||
}
|
||||
}
|
||||
solOut(dx, dy, dz, e) += solZ;
|
||||
}
|
||||
}
|
||||
}
|
||||
@barrier("s_xy_sync_2");
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,142 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "operator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
// FIXME: move this object to the Backend?
|
||||
::occa::kernelBuilder OccaConstrainedOperator::mapDofBuilder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_map_dofs",
|
||||
|
||||
"const int idx = v2[i];"
|
||||
"v0[idx] = v1[idx];",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
// FIXME: move this object to the Backend?
|
||||
::occa::kernelBuilder OccaConstrainedOperator::clearDofBuilder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_clear_dofs",
|
||||
|
||||
"v0[v1[i]] = 0.0;",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
OccaConstrainedOperator::OccaConstrainedOperator(
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_)
|
||||
|
||||
: Operator(A_->InLayout()->As<Layout>()),
|
||||
z(OutLayout_()),
|
||||
w(OutLayout_()),
|
||||
mfem_z((z.DontDelete(), z)),
|
||||
mfem_w((w.DontDelete(), w))
|
||||
{
|
||||
Setup(OutLayout_().OccaEngine().GetDevice(), A_, constraintList_, own_A_);
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::Setup(::occa::device device_,
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_)
|
||||
{
|
||||
device = device_;
|
||||
|
||||
A = A_;
|
||||
own_A = own_A_;
|
||||
|
||||
constraintIndices = constraintList_.Size();
|
||||
if (constraintList_.Size() > 0)
|
||||
{
|
||||
constraintList = constraintList_.Get_PArray()->As<Array>().OccaMem();
|
||||
}
|
||||
else
|
||||
{
|
||||
// constraintList is not used
|
||||
}
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::EliminateRHS(const Vector &x, Vector &b) const
|
||||
{
|
||||
::occa::kernel mapDofs = mapDofBuilder.build(device);
|
||||
|
||||
w.OccaFill(0.0);
|
||||
|
||||
if (constraintIndices)
|
||||
{
|
||||
mapDofs(constraintIndices, w.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
|
||||
A->Mult(mfem_w, mfem_z);
|
||||
|
||||
b.Axpby<double>(1.0, b, -1.0, z);
|
||||
|
||||
if (constraintIndices)
|
||||
{
|
||||
mapDofs(constraintIndices, b.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
mfem::Vector mfem_y(y);
|
||||
if (constraintIndices == 0)
|
||||
{
|
||||
A->Mult(x.Wrap(), mfem_y);
|
||||
return;
|
||||
}
|
||||
|
||||
::occa::kernel mapDofs = mapDofBuilder.build(device);
|
||||
::occa::kernel clearDofs = clearDofBuilder.build(device);
|
||||
|
||||
// z.OccaAssign(x); // z = x
|
||||
// Is Axpy faster than DtoD copy on Volta?
|
||||
z.Axpby(1.0, x, 0.0, x);
|
||||
|
||||
clearDofs(constraintIndices, z.OccaMem(), constraintList);
|
||||
|
||||
A->Mult(mfem_z, mfem_y);
|
||||
|
||||
mapDofs(constraintIndices, y.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
|
||||
OccaConstrainedOperator::~OccaConstrainedOperator()
|
||||
{
|
||||
if (own_A)
|
||||
{
|
||||
delete A;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,127 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
#define MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/operator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Operator : public mfem::Operator
|
||||
{
|
||||
public:
|
||||
/// Creare an operator with the same dimensions as @a orig.
|
||||
Operator(const Operator &orig)
|
||||
: mfem::Operator(orig) { }
|
||||
|
||||
Operator(Layout &layout)
|
||||
: mfem::Operator(layout) { }
|
||||
|
||||
Operator(Layout &in_layout, Layout &out_layout)
|
||||
: mfem::Operator(in_layout, out_layout) { }
|
||||
|
||||
Layout &InLayout_() const { return in_layout->As<Layout>(); }
|
||||
|
||||
Layout &OutLayout_() const { return out_layout->As<Layout>(); }
|
||||
|
||||
virtual void Mult_(const Vector &x, Vector &y) const = 0;
|
||||
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const
|
||||
{ MFEM_ABORT("method is not supported"); }
|
||||
|
||||
// override
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
Mult_(x.Get_PVector()->As<Vector>(),
|
||||
y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
|
||||
// override
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
MultTranspose_(x.Get_PVector()->As<Vector>(),
|
||||
y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
class OccaConstrainedOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
::occa::device device;
|
||||
|
||||
mfem::Operator *A; //< The unconstrained Operator.
|
||||
bool own_A; //< Ownership flag for A.
|
||||
::occa::memory constraintList; //< List of constrained indices/dofs.
|
||||
int constraintIndices;
|
||||
mutable Vector z, w; //< Auxiliary vectors.
|
||||
mutable mfem::Vector mfem_z, mfem_w; // Wrap z, w
|
||||
|
||||
static ::occa::kernelBuilder mapDofBuilder, clearDofBuilder;
|
||||
|
||||
public:
|
||||
/** @brief Constructor from a general Operator and a list of essential
|
||||
indices/dofs.
|
||||
|
||||
Specify the unconstrained operator @a *A and a @a list of indices to
|
||||
constrain, i.e. each entry @a list[i] represents an essential-dof. If the
|
||||
ownership flag @a own_A is true, the operator @a *A will be destroyed
|
||||
when this object is destroyed. */
|
||||
OccaConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_ = false);
|
||||
|
||||
void Setup(::occa::device device_,
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_ = false);
|
||||
|
||||
/** @brief Eliminate "essential boundary condition" values specified in @a x
|
||||
from the given right-hand side @a b.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((0,x_b)); b_i -= z_i; b_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
void EliminateRHS(const Vector &x, Vector &b) const;
|
||||
|
||||
/** @brief Constrained operator action.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((x_i,0)); y_i = z_i; y_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
virtual ~OccaConstrainedOperator();
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over dofs
|
||||
================================================
|
||||
*/
|
||||
|
||||
@kernel void Mult(const int entries,
|
||||
@restrict const int *offsets,
|
||||
@restrict const int *indices,
|
||||
@restrict const double *weights,
|
||||
@restrict const double *in,
|
||||
@restrict double *out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
double value = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
value += weights[j] * in[indices[j]];
|
||||
}
|
||||
out[i] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MappedMult(const int entries,
|
||||
@restrict const int *offsets,
|
||||
@restrict const int *indices,
|
||||
@restrict const double *weights,
|
||||
@restrict const int *outIndices,
|
||||
@restrict const double *in,
|
||||
@restrict double *out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
double value = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
value += weights[j] * in[indices[j]];
|
||||
}
|
||||
out[outIndices[i]] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,221 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "sparsemat.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
: Operator(in_layout, out_layout)
|
||||
{
|
||||
Setup(in_layout.OccaEngine().GetDevice(), m, props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props)
|
||||
: Operator(in_layout, out_layout),
|
||||
offsets(offsets_),
|
||||
indices(indices_),
|
||||
weights(weights_),
|
||||
reorderIndices(reorderIndices_),
|
||||
mappedIndices(mappedIndices_)
|
||||
{
|
||||
SetupKernel(in_layout.OccaEngine().GetDevice(), props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
Setup(device, m, ::occa::array<int>(), ::occa::array<int>(), props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Setup(::occa::device device, const SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
MFEM_ASSERT(m.Finalized(), "");
|
||||
MFEM_ASSERT(m.Height() == height, "");
|
||||
MFEM_ASSERT(m.Width() == width, "");
|
||||
|
||||
const int nnz = m.GetI()[height];
|
||||
offsets.allocate(device,
|
||||
height + 1, m.GetI());
|
||||
indices.allocate(device,
|
||||
nnz, m.GetJ());
|
||||
weights.allocate(device,
|
||||
nnz, m.GetData());
|
||||
|
||||
offsets.keepInDevice();
|
||||
indices.keepInDevice();
|
||||
weights.keepInDevice();
|
||||
|
||||
reorderIndices = reorderIndices_;
|
||||
mappedIndices = mappedIndices_;
|
||||
|
||||
SetupKernel(device, props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::SetupKernel(::occa::device device,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const bool hasOutIndices = mappedIndices.isInitialized();
|
||||
|
||||
const ::occa::properties defaultProps("defines: {"
|
||||
" TILESIZE: 256,"
|
||||
"}");
|
||||
|
||||
const std::string &okl_path = InLayout_().OccaEngine().GetOklPath();
|
||||
mapKernel = device.buildKernel(okl_path + "mappings.okl",
|
||||
"MapSubVector",
|
||||
defaultProps + props);
|
||||
|
||||
multKernel = device.buildKernel(okl_path + "sparse.okl",
|
||||
hasOutIndices ? "MappedMult" : "Mult",
|
||||
defaultProps + props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (reorderIndices.isInitialized() ||
|
||||
mappedIndices.isInitialized())
|
||||
{
|
||||
if (reorderIndices.isInitialized())
|
||||
{
|
||||
mapKernel((int) (reorderIndices.size() / 2),
|
||||
reorderIndices,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
if (mappedIndices.isInitialized())
|
||||
{
|
||||
multKernel((int) (mappedIndices.size()),
|
||||
offsets, indices, weights,
|
||||
mappedIndices,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
multKernel((int) height,
|
||||
offsets, indices, weights,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
OccaSparseMatrix* CreateMappedSparseMatrix(Layout &in_layout,
|
||||
Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const int mHeight = m.Height();
|
||||
// const int mWidth = m.Width();
|
||||
|
||||
// Count indices that are only reordered (true dofs)
|
||||
const int *I = m.GetI();
|
||||
const int *J = m.GetJ();
|
||||
const double *D = m.GetData();
|
||||
|
||||
int trueCount = 0;
|
||||
for (int i = 0; i < mHeight; ++i)
|
||||
{
|
||||
trueCount += ((I[i + 1] - I[i]) == 1);
|
||||
}
|
||||
const int dupCount = (mHeight - trueCount);
|
||||
|
||||
// Create the reordering map for entries that aren't modified (true dofs)
|
||||
::occa::device device(in_layout.OccaEngine().GetDevice());
|
||||
::occa::array<int> reorderIndices(device,
|
||||
2 * trueCount);
|
||||
::occa::array<int> mappedIndices, offsets, indices;
|
||||
::occa::array<double> weights;
|
||||
|
||||
if (dupCount)
|
||||
{
|
||||
mappedIndices.allocate(device,
|
||||
dupCount);
|
||||
}
|
||||
int trueIdx = 0, dupIdx = 0;
|
||||
for (int i = 0; i < mHeight; ++i)
|
||||
{
|
||||
const int i1 = I[i];
|
||||
if ((I[i + 1] - i1) == 1)
|
||||
{
|
||||
reorderIndices[trueIdx++] = J[i1];
|
||||
reorderIndices[trueIdx++] = i;
|
||||
}
|
||||
else
|
||||
{
|
||||
mappedIndices[dupIdx++] = i;
|
||||
}
|
||||
}
|
||||
reorderIndices.keepInDevice();
|
||||
|
||||
if (dupCount)
|
||||
{
|
||||
mappedIndices.keepInDevice();
|
||||
|
||||
// Extract sparse matrix without reordered identity
|
||||
const int dupNnz = I[mHeight] - trueCount;
|
||||
|
||||
offsets.allocate(device,
|
||||
dupCount + 1);
|
||||
indices.allocate(device,
|
||||
dupNnz);
|
||||
weights.allocate(device,
|
||||
dupNnz);
|
||||
|
||||
int nnz = 0;
|
||||
offsets[0] = 0;
|
||||
for (int i = 0; i < dupCount; ++i)
|
||||
{
|
||||
const int idx = mappedIndices[i];
|
||||
const int offStart = I[idx];
|
||||
const int offEnd = I[idx + 1];
|
||||
offsets[i + 1] = offsets[i] + (offEnd - offStart);
|
||||
for (int j = offStart; j < offEnd; ++j)
|
||||
{
|
||||
indices[nnz] = J[j];
|
||||
weights[nnz] = D[j];
|
||||
++nnz;
|
||||
}
|
||||
}
|
||||
|
||||
offsets.keepInDevice();
|
||||
indices.keepInDevice();
|
||||
weights.keepInDevice();
|
||||
}
|
||||
|
||||
return new OccaSparseMatrix(in_layout, out_layout,
|
||||
offsets, indices, weights,
|
||||
reorderIndices, mappedIndices,
|
||||
props);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,89 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "vector.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "operator.hpp"
|
||||
#include "../../linalg/sparsemat.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class OccaSparseMatrix : public Operator
|
||||
{
|
||||
protected:
|
||||
::occa::array<int> offsets, indices;
|
||||
::occa::array<double> weights;
|
||||
::occa::array<int> reorderIndices, mappedIndices;
|
||||
::occa::kernel mapKernel, multKernel;
|
||||
|
||||
void Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props);
|
||||
|
||||
void Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props);
|
||||
|
||||
void SetupKernel(::occa::device device,
|
||||
const ::occa::properties &props);
|
||||
|
||||
public:
|
||||
/// Construct an empty OccaSparseMatrix.
|
||||
OccaSparseMatrix(const Operator &orig)
|
||||
: Operator(orig) { }
|
||||
|
||||
// Implicitly defined copy constructor.
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
const ::occa::array<int> &GetReorderIndices() const
|
||||
{ return reorderIndices; }
|
||||
|
||||
// override
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
|
||||
/// TODO: doxygen
|
||||
OccaSparseMatrix* CreateMappedSparseMatrix(
|
||||
Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
@@ -0,0 +1,81 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "url_handler.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
#include <cstdlib>
|
||||
#include <sys/stat.h>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
FileOpener::FileOpener(const std::string &prefix,
|
||||
const std::string &env_variable)
|
||||
: pfx(prefix)
|
||||
{
|
||||
const char *env_path = getenv(env_variable.c_str());
|
||||
if (!env_path) { return; }
|
||||
std::string path(env_path);
|
||||
for (std::size_t start = 0, end; start < path.size(); start = end + 1)
|
||||
{
|
||||
end = path.find(':', start);
|
||||
if (end == std::string::npos)
|
||||
{
|
||||
AddDir(path.substr(start, end));
|
||||
break;
|
||||
}
|
||||
AddDir(path.substr(start, end - start));
|
||||
}
|
||||
}
|
||||
|
||||
bool FileOpener::AddDir(const std::string &dir)
|
||||
{
|
||||
if (dir.size() == 0 || dir[0] != '/') { return false; }
|
||||
struct stat dir_stat;
|
||||
if (stat(dir.c_str(), &dir_stat)) { return false; }
|
||||
if (!S_ISDIR(dir_stat.st_mode)) { return false; }
|
||||
paths.push_back(dir + (*dir.rbegin() == '/' ? "" : "/"));
|
||||
return true;
|
||||
}
|
||||
|
||||
bool FileOpener::handles(const std::string &filename)
|
||||
{
|
||||
return filename.size() >= pfx.size() &&
|
||||
filename.compare(0, pfx.size(), pfx) == 0;
|
||||
}
|
||||
|
||||
std::string FileOpener::expand(const std::string &filename)
|
||||
{
|
||||
std::string sfx(filename.substr(pfx.size()));
|
||||
for (std::size_t i = 0; i < paths.size(); i++)
|
||||
{
|
||||
std::string file = paths[i] + sfx;
|
||||
struct stat file_stat;
|
||||
if (stat(file.c_str(), &file_stat) == 0 && S_ISREG(file_stat.st_mode))
|
||||
{
|
||||
return file;
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("invalid url: " << filename);
|
||||
return sfx;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,47 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
#define MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class FileOpener : public ::occa::io::fileOpener
|
||||
{
|
||||
protected:
|
||||
std::string pfx; // prefix, e.g. "mfem://"
|
||||
std::vector<std::string> paths; // paths to search for prefix replacement
|
||||
|
||||
public:
|
||||
FileOpener(const std::string &prefix, const std::string &env_variable);
|
||||
|
||||
bool AddDir(const std::string &dir);
|
||||
|
||||
virtual bool handles(const std::string &filename);
|
||||
virtual std::string expand(const std::string &filename);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user