Compare commits
2
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
e61f04062f | ||
|
|
040a2e1a90 |
+13
-30
@@ -1,13 +1,10 @@
|
||||
version: '{build}'
|
||||
|
||||
# https://www.appveyor.com/docs/build-environment/#build-worker-images
|
||||
image: Visual Studio 2019
|
||||
image: Visual Studio 2017
|
||||
|
||||
install:
|
||||
|
||||
# Start from outside clone directory
|
||||
- cd ..
|
||||
|
||||
# Install MS-MPI
|
||||
- ps: Start-FileDownload 'https://download.microsoft.com/download/B/2/E/B2EB83FE-98C2-4156-834A-E1711E6884FB/MSMpiSetup.exe'
|
||||
- MSMpiSetup.exe -unattend
|
||||
@@ -18,51 +15,37 @@ install:
|
||||
- msmpisdk.msi /passive
|
||||
- set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
|
||||
|
||||
# Set MSMPI environment variables needed for CMake detection
|
||||
- set MSMPI_LIB32=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86
|
||||
- set MSMPI_LIB64=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64
|
||||
- set MSMPI_INC=C:\Program Files (x86)\Microsoft SDKs\MPI\Include
|
||||
|
||||
# Install METIS, use MFEM's mirror because the original source server is often
|
||||
# down and we don't support yet the new repo https://github.com/KarypisLab/METIS
|
||||
# Install METIS, use a mirror because the original source server is not always
|
||||
# up. Original url:
|
||||
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
|
||||
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
|
||||
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd metis-5.1.0
|
||||
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
|
||||
- cmake -H. -Bbuild
|
||||
# -DCMAKE_BUILD_TYPE=Release
|
||||
- cmake --build build --target metis -j 4
|
||||
- set METIS_PATH=%cd%
|
||||
- cmake --build build
|
||||
- cd ..
|
||||
|
||||
# Install hypre
|
||||
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
|
||||
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.19.0/src
|
||||
- cmake -H. -Bbuild
|
||||
- cmake --build build -j 4
|
||||
- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- cmake --build build
|
||||
- cmake --build build --target install
|
||||
- cd ../..
|
||||
|
||||
# Return to clone directory
|
||||
- cd %APPVEYOR_BUILD_FOLDER%
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
|
||||
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
|
||||
build_script:
|
||||
- cmake --build build_parallel --config Debug -j 4
|
||||
# - cmake --build build_serial --config Release -j 4
|
||||
# - cmake --build build_serial --target exec --config Release -j 4
|
||||
- cmake --build build_shared_serial --config Release -j 4
|
||||
- cmake --build build_shared_serial --target exec --config Release -j 4
|
||||
- cmake --build build_parallel --config Release -j 4
|
||||
- cmake --build build_serial --config Release -j 4
|
||||
- cmake --build build_serial --target exec --config Release -j 4
|
||||
|
||||
after_build:
|
||||
# - cd build_serial
|
||||
# - ctest -C Release --output-on-failure
|
||||
# - cd ..
|
||||
- cd build_shared_serial
|
||||
- cd build_serial
|
||||
- ctest -C Release --output-on-failure
|
||||
|
||||
@@ -1,12 +0,0 @@
|
||||
# extends https://github.com/jupyterhub/repo2docker/blob/main/repo2docker/buildpacks/conda/environment.yml
|
||||
# see https://mybinder.readthedocs.io/en/latest/using/config_files.html#environment-yml-install-a-conda-environment
|
||||
channels:
|
||||
- conda-forge
|
||||
dependencies:
|
||||
- xeus-cling=0.13.0
|
||||
- xwidgets=0.26.0
|
||||
# NOTE: it is possible that these are not needed for the lab frontend
|
||||
- widgetsnbextension=3.5.1
|
||||
- pip
|
||||
- pip:
|
||||
- glvis==0.3.2
|
||||
@@ -1,26 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
set -e
|
||||
|
||||
# cling is installed here (in bin) and will look in {dir}/include and {dir}/lib
|
||||
# without extra intervention (jk it doesn't look in {dir}/lib unless something
|
||||
# has been #included from {dir}/include first...)
|
||||
install_dir=/srv/conda/envs/notebook
|
||||
mkdir -p $install_dir
|
||||
|
||||
# build and install mfem, which is the directory we start in
|
||||
make serial SHARED=YES -j8
|
||||
make install PREFIX=$install_dir
|
||||
|
||||
# install xeus-glvis
|
||||
git clone https://github.com/GLVis/xeus-glvis.git
|
||||
pushd xeus-glvis
|
||||
make install prefix=$install_dir
|
||||
popd
|
||||
|
||||
# install jupyter-lab extension
|
||||
jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build
|
||||
jupyter labextension install glvis-jupyter
|
||||
|
||||
# fixup kernelspec, we could probably do this from sh but ¯\_(ツ)_/¯
|
||||
python .binder/update_kernel_env.py
|
||||
@@ -1,14 +0,0 @@
|
||||
# Update the LD_LIBRARY_PATH of the C++14 kernel so it can find mfem without
|
||||
# extra pragma cling statements
|
||||
|
||||
import json
|
||||
|
||||
kernelspec = "/srv/conda/envs/notebook/share/jupyter/kernels/xcpp14/kernel.json"
|
||||
|
||||
with open(kernelspec, "r") as f:
|
||||
obj = json.load(f)
|
||||
|
||||
obj["env"] = {"LD_LIBRARY_PATH": "/srv/conda/envs/notebook/lib"}
|
||||
|
||||
with open(kernelspec, "w") as f:
|
||||
json.dump(obj, f)
|
||||
@@ -1,32 +0,0 @@
|
||||
codecov:
|
||||
require_ci_to_pass: yes
|
||||
|
||||
coverage:
|
||||
precision: 2
|
||||
round: nearest
|
||||
range: "0...100"
|
||||
status:
|
||||
patch:
|
||||
default:
|
||||
target: auto
|
||||
threshold: 0%
|
||||
base: auto
|
||||
branches:
|
||||
- master
|
||||
if_ci_failed: error
|
||||
informational: true
|
||||
only_pulls: true
|
||||
project:
|
||||
default:
|
||||
target: auto # compares coverage to the previous base commit
|
||||
threshold: 1% # allows variations around the target
|
||||
base: auto
|
||||
branches:
|
||||
- master
|
||||
if_ci_failed: error
|
||||
only_pulls: true
|
||||
|
||||
github_checks:
|
||||
annotations: false
|
||||
|
||||
comment: false
|
||||
+1
-1
@@ -36,7 +36,7 @@ staleLabel: stale
|
||||
# Comment to post when marking an issue as stale. Set to `false` to disable
|
||||
markComment: >
|
||||
:warning: This issue or PR has been automatically marked as stale because it has not
|
||||
had any activity in the last month. *If no activity occurs in the next week, it will
|
||||
had any activity in the last month. *If no activity occurs in the next week, it will
|
||||
be automatically closed.* Thank you for your contributions.
|
||||
|
||||
# Comment to post when closing a stale issue. Set to `false` to disable
|
||||
|
||||
@@ -1,48 +0,0 @@
|
||||
Finite Element Discretization Library
|
||||
__
|
||||
_ __ ___ / _| ___ _ __ ___
|
||||
| '_ ` _ \ | |_ / _ \| '_ ` _ \
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
|
||||
|
||||
This directory contains the GitHub CI scripts for MFEM.
|
||||
|
||||
Note that some of these scripts use the shared MFEM GitHub Actions from the external mfem/github-actions repository:
|
||||
|
||||
https://github.com/mfem/github-actions
|
||||
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.1`, the `v2.1` suffix denotes the branch in the above from which the action is taken.
|
||||
|
||||
The current CI workflows are:
|
||||
|
||||
### `repo-check.yml`
|
||||
|
||||
Runs a number of static repository-level sanity checks.
|
||||
|
||||
- `file-headers-check` checks copyright date, license, etc. using the `--copyright`, `--license` and `--release` options of the `config/githooks/pre-push` script.
|
||||
|
||||
- `code-style` checks the code style using the `--style` option of the `config/githooks/pre-push` script.
|
||||
|
||||
- `documentation` checks the documentation build using the `tests/scripts/documentation` script.
|
||||
|
||||
- `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
|
||||
|
||||
### `mfem-analysis.yml` (`build-analysis`)
|
||||
|
||||
Checks if the code builds and satisfies minimal requirements.
|
||||
|
||||
- `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
|
||||
|
||||
### `builds-and-tests.yml`
|
||||
|
||||
Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
|
||||
|
||||
Uses the following GitHub Actions from https://github.com/mfem/github-actions:
|
||||
|
||||
- `mfem/github-actions/build-hypre`
|
||||
- `mfem/github-actions/build-metis`
|
||||
- `mfem/github-actions/build-mfem`
|
||||
- `mfem/github-actions/upload-coverage`
|
||||
@@ -1,85 +0,0 @@
|
||||
name: "Docker"
|
||||
|
||||
on:
|
||||
# Always have a base image ready to go - this is a nightly build
|
||||
schedule:
|
||||
- cron: 0 3 * * *
|
||||
|
||||
# Allow manual trigger of a build
|
||||
workflow_dispatch:
|
||||
|
||||
# On push to main we build and deploy images
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
|
||||
# Publish packages on release
|
||||
release:
|
||||
types: [published]
|
||||
|
||||
jobs:
|
||||
build:
|
||||
if: github.repository == 'mfem/mfem' # Don't run in forks
|
||||
permissions:
|
||||
packages: write
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
# Dockerfiles to build, a matrix supports future expanded builds
|
||||
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
|
||||
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
|
||||
|
||||
runs-on: ubuntu-latest
|
||||
name: Build
|
||||
steps:
|
||||
- name: Run Actions Cleaner
|
||||
uses: easimon/maximize-build-space@v8
|
||||
with:
|
||||
overprovision-lvm: 'true'
|
||||
remove-dotnet: 'true'
|
||||
remove-android: 'true'
|
||||
remove-haskell: 'true'
|
||||
remove-codeql: 'true'
|
||||
remove-docker-images: 'true'
|
||||
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v3
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Set Environment
|
||||
env:
|
||||
dockerfile: ${{ matrix.container[0] }}
|
||||
uri: ${{ matrix.container[1] }}
|
||||
run: |
|
||||
echo "dockerfile=$dockerfile" >> $GITHUB_ENV
|
||||
echo "uri=$uri" >> $GITHUB_ENV
|
||||
|
||||
- name: Pull previous layers for cache
|
||||
run: docker pull ${uri}:latest || echo "No container to pull"
|
||||
|
||||
- name: Build Container
|
||||
run: |
|
||||
container=$uri:latest
|
||||
docker build -f ${dockerfile} -t ${container} .
|
||||
echo "container=$container" >> $GITHUB_ENV
|
||||
|
||||
- name: GHCR Login
|
||||
if: (github.event_name != 'pull_request')
|
||||
uses: docker/login-action@v2
|
||||
with:
|
||||
registry: ghcr.io
|
||||
username: ${{ github.actor }}
|
||||
password: ${{ secrets.GITHUB_TOKEN }}
|
||||
|
||||
- name: Deploy
|
||||
if: (github.event_name != 'pull_request')
|
||||
run: |
|
||||
docker push ${container}
|
||||
|
||||
- name: Tag and Push Release
|
||||
if: (github.event_name == 'release')
|
||||
run: |
|
||||
tag=${GITHUB_REF#refs/tags/}
|
||||
echo "Tagging and releasing ${uri}:${tag}"
|
||||
docker tag ${uri}:latest ${uri}:${tag}
|
||||
docker push ${uri}:${tag}
|
||||
@@ -1,289 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# In this CI section, we build different variants of mfem and run test on them.
|
||||
name: "Tests"
|
||||
|
||||
# Github actions can use the default "GITHUB_TOKEN". By default, this token
|
||||
# is set to have permissive access. However, this is not a good practice
|
||||
# security-wise. Here we use an external action, so we restrict the
|
||||
# permission to the minimum required.
|
||||
# When the 'permissions' is set, all the scopes not mentioned are set to the
|
||||
# most restrictive setting. So the following is enough.
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
MFEM_TOP_DIR: mfem
|
||||
|
||||
# Note for future improvements:
|
||||
#
|
||||
# We cannot reuse cached dependencies and have to build them for each target
|
||||
# although they could be shared sometimes. That's because Github cache Action
|
||||
# has no read-only mode. But there is a PR ready for this
|
||||
# (https://github.com/actions/cache/pull/489)
|
||||
|
||||
jobs:
|
||||
builds-and-tests:
|
||||
strategy:
|
||||
matrix:
|
||||
os: [ubuntu-latest, macos-latest, windows-latest]
|
||||
target: [dbg, opt]
|
||||
mpi: [seq, par]
|
||||
build-system: [make, cmake]
|
||||
hypre-target: [int32]
|
||||
exclude:
|
||||
- os: ubuntu-latest
|
||||
build-system: cmake
|
||||
- os: macos-latest
|
||||
build-system: cmake
|
||||
- os: windows-latest
|
||||
build-system: make
|
||||
# 'include' allows us to:
|
||||
# - Add a variable to all jobs without creating a new matrix dimension.
|
||||
# Codecov is defined that way.
|
||||
# - Add a new combination.
|
||||
# 'build-system: cmake' and 'hypre-target: int64'
|
||||
#
|
||||
# Note: we will gather coverage info for any non-debug run except the
|
||||
# CMake build.
|
||||
include:
|
||||
- target: dbg
|
||||
codecov: NO
|
||||
- target: opt
|
||||
codecov: YES
|
||||
- os: ubuntu-latest
|
||||
target: dbg
|
||||
config-opts: 'CPPFLAGS+=-Og'
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
target: opt
|
||||
mpi: par
|
||||
config-opts: '-DBUILD_SHARED_LIBS=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
# This option can be set to pass additional configuration options to
|
||||
# the MFEM configuration command.
|
||||
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int64
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
|
||||
runs-on: ${{ matrix.os }}
|
||||
|
||||
steps:
|
||||
# This external action allows to interrupt a workflow already running on
|
||||
# the same branch to save resources.
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
# Fix 'No space left on device' errors for Ubuntu builds.
|
||||
- name: Run Actions Cleaner
|
||||
if: matrix.os == 'ubuntu-latest'
|
||||
uses: easimon/maximize-build-space@v8
|
||||
with:
|
||||
overprovision-lvm: 'true'
|
||||
remove-android: 'true'
|
||||
|
||||
# Checkout MFEM in "mfem" subdirectory. Final path:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
- name: get MPI (Linux)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
|
||||
# Keep the following section in case we need it again in the future,
|
||||
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
|
||||
# - name: Set up Homebrew
|
||||
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
|
||||
# uses: Homebrew/actions/setup-homebrew@master
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
|
||||
- name: get lcov (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install lcov
|
||||
|
||||
- name: get MPI (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
uses: mpi4py/setup-mpi@v1.1.4
|
||||
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: make
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: cmake
|
||||
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
|
||||
- name: prepare vcpkg binary cache location (Windows)
|
||||
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
|
||||
run: |
|
||||
mkdir -p vcpkg_cache
|
||||
|
||||
- name: install metis (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
run: |
|
||||
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
os: ${{ matrix.os }}
|
||||
target: ${{ matrix.target }}
|
||||
codecov: ${{ matrix.codecov }}
|
||||
mpi: ${{ matrix.mpi }}
|
||||
build-system: ${{ matrix.build-system }}
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
- name: checks
|
||||
if: matrix.build-system == 'make' && matrix.target == 'dbg'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make check
|
||||
|
||||
# Note: 'tests' include the unit tests
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make test
|
||||
|
||||
- name: cmake checks
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
|
||||
run: |
|
||||
CTEST_CONFIG="Debug"
|
||||
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
- name: cmake unit tests (Ubuntu)
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
- name: cmake tests
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && \
|
||||
ctest --output-on-failure -C ${CTEST_CONFIG} || \
|
||||
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
@@ -1,69 +0,0 @@
|
||||
# For most projects, this workflow file will not need changing; you simply need
|
||||
# to commit it to your repository.
|
||||
#
|
||||
# You may wish to alter this file to override the set of languages analyzed,
|
||||
# or to provide custom queries or build logic.
|
||||
#
|
||||
# ******** NOTE ********
|
||||
# We have attempted to detect the languages in your repository. Please check
|
||||
# the `language` matrix defined below to confirm you have the correct set of
|
||||
# supported CodeQL languages.
|
||||
#
|
||||
name: "Static Analysis"
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: ["master", "next"]
|
||||
pull_request:
|
||||
# The branches below must be a subset of the branches above
|
||||
branches: ["master"]
|
||||
|
||||
jobs:
|
||||
analyze:
|
||||
name: Analyze
|
||||
runs-on: ubuntu-latest
|
||||
permissions:
|
||||
actions: read
|
||||
contents: read
|
||||
security-events: write
|
||||
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
language: [ 'cpp' ]
|
||||
# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
|
||||
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
# By default, queries listed here will override any specified in a config file.
|
||||
# Prefix the list here with "+" to use these queries and those in the config file.
|
||||
|
||||
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
|
||||
# If the Autobuild fails above, remove it and uncomment the following three lines.
|
||||
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
|
||||
|
||||
# - run: |
|
||||
# echo "Run, Build Application using script"
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
@@ -1,100 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Build Analysis"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
COVERAGE_ENV: mfem-coverage
|
||||
|
||||
jobs:
|
||||
gitignore:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: int32
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: mfem
|
||||
|
||||
- name: test (no clean)
|
||||
run: |
|
||||
cd mfem && make test-noclean
|
||||
|
||||
- name: gitignore
|
||||
run: |
|
||||
cd mfem/tests/scripts
|
||||
./runtest gitignore
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Sanitizer"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
jobs:
|
||||
Serial:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: MFEM Checkout
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
mpi: seq
|
||||
hypre-dir: unused-hypre-dir
|
||||
metis-dir: unused-metis-dir
|
||||
mfem-dir: mfem
|
||||
build-system: make
|
||||
library-only: false
|
||||
config-options:
|
||||
CXX="clang++-14"
|
||||
CXXFLAGS="-g -O1 -std=c++11
|
||||
-fsanitize=address
|
||||
-fno-omit-frame-pointer
|
||||
-fsanitize-address-use-after-scope"
|
||||
|
||||
- name: MFEM Info
|
||||
working-directory: mfem
|
||||
run: make info
|
||||
|
||||
- name: MFEM Sanitize
|
||||
working-directory: mfem
|
||||
run:
|
||||
ASAN_OPTIONS="detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1"
|
||||
make test
|
||||
@@ -1,140 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Checks"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
# This workflow is run on pushes to any branch in the MFEM repo (with or without
|
||||
# PRs), as well as on updates to PRs from forks. In particular, we do not
|
||||
# duplicate work by running on both pushes and updates to local PRs. We do that
|
||||
# by checking if the workflow trigger is 'push' ("github.event_name == 'push'")
|
||||
# and if we are in a fork ("github.event.pull_request.head.repo.full_name !=
|
||||
# github.repository").
|
||||
|
||||
jobs:
|
||||
file-headers-check:
|
||||
runs-on: ubuntu-latest
|
||||
if: |
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
run: |
|
||||
./config/githooks/pre-push --copyright
|
||||
|
||||
continue-on-error: true
|
||||
|
||||
- name: license check
|
||||
id: license
|
||||
run: |
|
||||
./config/githooks/pre-push --license
|
||||
continue-on-error: true
|
||||
|
||||
- name: release check
|
||||
id: release
|
||||
run: |
|
||||
./config/githooks/pre-push --release
|
||||
continue-on-error: true
|
||||
|
||||
- name: wrap-up
|
||||
if: |
|
||||
steps.copyright.outcome != 'success' ||
|
||||
steps.license.outcome != 'success' ||
|
||||
steps.release.outcome != 'success'
|
||||
run: |
|
||||
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
|
||||
echo "copyright check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
|
||||
echo "license check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
|
||||
echo "release check failed, unroll log for details"
|
||||
fi
|
||||
exit 1
|
||||
|
||||
code-style:
|
||||
runs-on: ubuntu-latest
|
||||
if: |
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
sudo apt-get install astyle
|
||||
|
||||
- name: style check
|
||||
run: |
|
||||
./config/githooks/pre-push --style
|
||||
|
||||
documentation:
|
||||
runs-on: ubuntu-latest
|
||||
if: |
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
|
||||
- name: update doxygen config file
|
||||
run: |
|
||||
cd doc
|
||||
doxygen -u CodeDocumentation.conf.in
|
||||
|
||||
- name: build documentation
|
||||
run: |
|
||||
cd tests/scripts
|
||||
./runtest documentation
|
||||
|
||||
branch-history:
|
||||
if: |
|
||||
github.ref != 'refs/heads/next' &&
|
||||
github.ref != 'refs/heads/master' &&
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: branch-history
|
||||
run: |
|
||||
# We override origin to make sure we point to the main repo.
|
||||
# This is to have consistent test results on PRs from forks.
|
||||
git remote remove origin
|
||||
git remote add origin https://github.com/mfem/mfem.git
|
||||
git checkout -b gh-actions-branch-history
|
||||
./config/githooks/pre-push --history
|
||||
+9
-123
@@ -21,16 +21,11 @@ CMakeFiles/
|
||||
# Default install location
|
||||
/mfem/
|
||||
|
||||
# Typical build directory
|
||||
/build/
|
||||
|
||||
# Generated files in main directory, config/ and docs/
|
||||
/deps.mk
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.cmake
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
doc/CodeDocumentation
|
||||
@@ -49,14 +44,12 @@ doc/warnings.log
|
||||
|
||||
# Example and miniapp binaries and outputs
|
||||
|
||||
examples/ex[0-9]
|
||||
examples/ex[0-9]p
|
||||
examples/ex[1-9]
|
||||
examples/ex[1-9]p
|
||||
examples/ex1[04-9]
|
||||
examples/ex1[0-9]p
|
||||
examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
examples/ex3[0-9]
|
||||
examples/ex3[0-9]p
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
@@ -73,7 +66,6 @@ examples/sol_u.*
|
||||
examples/sol_p.*
|
||||
examples/sol_r.*
|
||||
examples/sol_i.*
|
||||
examples/ex6p-checkpoint.*
|
||||
examples/ex9.mesh
|
||||
examples/ex9-mesh.*
|
||||
examples/ex9-init.*
|
||||
@@ -82,7 +74,6 @@ examples/deformed.*
|
||||
examples/velocity.*
|
||||
examples/elastic_energy.*
|
||||
examples/mode_*
|
||||
examples/mode_deriv_*
|
||||
examples/ex5-p-*.bp
|
||||
examples/ex9-p-*.bp
|
||||
examples/ex12-p-*.bp
|
||||
@@ -110,15 +101,6 @@ examples/Example23*
|
||||
examples/ex25.mesh
|
||||
examples/ex25-*.gf
|
||||
examples/ex25p-*.*
|
||||
examples/ex28_*
|
||||
examples/ex28p_*
|
||||
examples/flux.*
|
||||
examples/dsol.*
|
||||
examples/cond.*
|
||||
examples/cond_j.*
|
||||
examples/cond_mesh.*
|
||||
examples/port_mesh.*
|
||||
examples/port_mode.*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
@@ -128,9 +110,11 @@ examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/ginkgo/ex1
|
||||
examples/ginkgo/refined.mesh
|
||||
examples/ginkgo/sol.gf
|
||||
examples/gingko/ex1
|
||||
examples/gingko/refined.mesh
|
||||
examples/gingko/sol.gf
|
||||
examples/gingko/mesh.*
|
||||
examples/gingko/sol.*
|
||||
|
||||
examples/hiop/ex9
|
||||
examples/hiop/ex9p
|
||||
@@ -156,8 +140,8 @@ examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex[12]
|
||||
examples/pumi/ex[16]p
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
@@ -202,9 +186,6 @@ miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
miniapps/gslib/findpts
|
||||
miniapps/gslib/pfindpts
|
||||
miniapps/gslib/schwarz_ex1
|
||||
miniapps/gslib/schwarz_ex1p
|
||||
miniapps/gslib/interpolated.gf
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
@@ -213,69 +194,41 @@ miniapps/meshing/twist
|
||||
miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/fit-node-position
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/reflector
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/pmesh-fitting
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
miniapps/meshing/mesh-quality
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/mesh-explorer-visit*
|
||||
miniapps/meshing/mesh-explorer-paraview/
|
||||
miniapps/meshing/shaper.mesh
|
||||
miniapps/meshing/extruder.mesh
|
||||
miniapps/meshing/trimmer.mesh
|
||||
miniapps/meshing/reflected.mesh
|
||||
miniapps/meshing/optimized*
|
||||
miniapps/meshing/perturbed*
|
||||
miniapps/meshing/polar-nc.mesh
|
||||
|
||||
miniapps/mtop/parheat
|
||||
miniapps/mtop/ParHeat*
|
||||
miniapps/mtop/seqheat
|
||||
miniapps/mtop/SeqHeat*
|
||||
|
||||
miniapps/autodiff/paradiff
|
||||
miniapps/autodiff/seqadiff
|
||||
miniapps/autodiff/seqtest
|
||||
miniapps/autodiff/par_example
|
||||
miniapps/autodiff/seq_example
|
||||
miniapps/autodiff/seq_test
|
||||
miniapps/autodiff/Exampl*
|
||||
|
||||
miniapps/navier/navier_mms
|
||||
miniapps/navier/navier_kovasznay
|
||||
miniapps/navier/navier_kovasznay_vs
|
||||
miniapps/navier/navier_tgv
|
||||
miniapps/navier/navier_shear
|
||||
miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/navier_turbchan
|
||||
miniapps/navier/navier_cht
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/nurbs_printfunc
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
miniapps/nurbs/sin-fit.mesh
|
||||
miniapps/nurbs/CurveInt
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
@@ -283,29 +236,11 @@ miniapps/performance/refined.mesh
|
||||
miniapps/performance/mesh.*
|
||||
miniapps/performance/sol.*
|
||||
|
||||
miniapps/shifted/distance
|
||||
miniapps/shifted/ParaViewDistance
|
||||
miniapps/shifted/ParaViewLSF
|
||||
miniapps/shifted/extrapolate
|
||||
miniapps/shifted/ParaViewExtrapolate
|
||||
miniapps/shifted/diffusion
|
||||
miniapps/shifted/diffusion.mesh
|
||||
miniapps/shifted/diffusion.gf
|
||||
miniapps/shifted/ParaViewDiffusion
|
||||
miniapps/shifted/lsf_integral
|
||||
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/plor-transfer
|
||||
miniapps/tools/get-values
|
||||
miniapps/tools/check-tmop-metric
|
||||
miniapps/tools/tmop-metric-magnitude
|
||||
miniapps/tools/nodal-transfer
|
||||
miniapps/tools/ParaView
|
||||
miniapps/tools/gridfunc_*
|
||||
miniapps/tools/mesh_*
|
||||
|
||||
miniapps/toys/automata
|
||||
miniapps/toys/life
|
||||
@@ -328,55 +263,13 @@ miniapps/toys/lissajous.mesh
|
||||
miniapps/toys/lissajous.gf
|
||||
miniapps/toys/mondrian.mesh
|
||||
|
||||
miniapps/solvers/block-solvers
|
||||
miniapps/solvers/lor_solvers
|
||||
miniapps/solvers/plor_solvers
|
||||
miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/hdiv-linear-solver/darcy
|
||||
miniapps/hdiv-linear-solver/grad_div
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/hooke/hooke
|
||||
|
||||
miniapps/dpg/diffusion
|
||||
miniapps/dpg/pdiffusion
|
||||
miniapps/dpg/convection-diffusion
|
||||
miniapps/dpg/pconvection-diffusion
|
||||
miniapps/dpg/acoustics
|
||||
miniapps/dpg/pacoustics
|
||||
miniapps/dpg/maxwell
|
||||
miniapps/dpg/pmaxwell
|
||||
miniapps/dpg/ParaView
|
||||
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
tests/unit/punit_tests
|
||||
tests/unit/cunit_tests
|
||||
tests/unit/pcunit_tests
|
||||
tests/unit/sedov_tests_*
|
||||
tests/unit/psedov_tests_*
|
||||
tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
tests/unit/parallel_in_serial.mesh
|
||||
tests/unit/parallel_in_serial.gf
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
tests/benchmarks/bench_tmop
|
||||
tests/benchmarks/bench_vector
|
||||
tests/benchmarks/bench_virtuals
|
||||
|
||||
# Test script output
|
||||
tests/scripts/*.err
|
||||
@@ -390,10 +283,3 @@ tests/par-mesh-format/ex1p
|
||||
|
||||
# VPATH builds
|
||||
build-*/*
|
||||
|
||||
# PETSc automated build
|
||||
petsc-build/*
|
||||
pkg.gitcommit
|
||||
|
||||
# Jupyter Notebook Checkpoints
|
||||
.ipynb_checkpoints
|
||||
|
||||
+283
-71
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -13,84 +13,296 @@
|
||||
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
|
||||
# LLNL-specific!
|
||||
|
||||
|
||||
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
|
||||
# the preceding stages to complete before to start. However, we sometimes use
|
||||
# the "needs" keyword and express the DAG of jobs for more efficiency.
|
||||
# - We use setup and setup_baseline phases to download content outside of mfem
|
||||
# directory.
|
||||
# - Allocate/Release is where quartz resource are allocated/released once for all.
|
||||
# - Build and Test is where we build and MFEM for multiple toolchains.
|
||||
# - Baseline_checks gathers baseline-type test suites execution
|
||||
# - Baseline_publish, only available on master, allows to update baseline
|
||||
# results
|
||||
stages:
|
||||
- sub-pipelines
|
||||
|
||||
variables:
|
||||
CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
|
||||
USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
|
||||
SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
|
||||
AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
|
||||
# MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
|
||||
# used in '.gitlab/configs/<machine>-config.yml':
|
||||
MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
|
||||
|
||||
# We define the following GitLab pipeline variables:
|
||||
#
|
||||
# BUILD_ROOT:
|
||||
# The path to the shared resources between all jobs. For example, external
|
||||
# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
|
||||
# once for all targets, so that build happen here. The BUILD_ROOT is unique to
|
||||
# the pipeline, preventing any form of concurrency with other pipelines. This
|
||||
# also means that the BUILD_ROOT directory will never be cleaned.
|
||||
# TODO: add a clean-up mechanism
|
||||
#
|
||||
# BUILD_PATH:
|
||||
# In BUILD_ROOT, we want to separate builds depending on the machine used,
|
||||
# typically because we build on a set of dependencies per machine.
|
||||
#
|
||||
# REBASELINE:
|
||||
# Defines the default choice for updating the saved baseline results. By default
|
||||
# the baseline can only be updated from the master branch. This variable offers
|
||||
# the option to manually ask for rebaselining from another branch if necessary.
|
||||
#
|
||||
# MFEM_ALLOC_NAME:
|
||||
# On LLNL's quartz, there is only one allocation shared among jobs in order to
|
||||
# save time and resources. This allocation has to be uniquely named so that we
|
||||
# are sure to retrieve it.
|
||||
#
|
||||
# TPLS_REPO & TESTS_REPO:
|
||||
# Git repositories used in the pipeline
|
||||
#
|
||||
# ARTIFACTS_DIR:
|
||||
# Directory used to place artifacts.
|
||||
|
||||
variables:
|
||||
BUILD_ROOT: ${CI_BUILDS_DIR}/${CI_PROJECT_NAME}_${CI_COMMIT_REF_SLUG}_${CI_PIPELINE_ID}
|
||||
BUILD_PATH: ${CI_BUILDS_DIR}/${CI_PROJECT_NAME}_${CI_COMMIT_REF_SLUG}_${CI_PIPELINE_ID}/${PLAT}/${TOOLCHAIN}
|
||||
REBASELINE: "NO"
|
||||
AUTOTEST: "NO"
|
||||
# AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
|
||||
# * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
|
||||
# files to the MFEM/autotest repo.
|
||||
# * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
|
||||
# files to the MFEM/autotest repo. Instead they will just show the contents
|
||||
# of the report files and remove them.
|
||||
AUTOTEST_COMMIT: "YES"
|
||||
MFEM_ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
|
||||
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
|
||||
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
|
||||
ARTIFACTS_DIR: artifacts
|
||||
|
||||
# Trigger subpipelines:
|
||||
quartz-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/quartz-build-and-test.yml
|
||||
strategy: depend
|
||||
# The pipeline is divided into stages. Usually, these are also synchronization
|
||||
# points, however, we use "needs" keyword to express the DAG of jobs for more
|
||||
# efficiency.
|
||||
# - We use setup phase to download content outside of mfem directory.
|
||||
# - Allocate is where quartz resources are allocated once for all.
|
||||
# - Libs is where dependencies are built.
|
||||
# - Build is where we build MFEM for multiple toolchains.
|
||||
# - Test is where we perform a first set of tests on MFEM build.
|
||||
# - Baseline_checks gathers baseline-type test suites execution
|
||||
# - Baseline_publish, only available on master, allows to update baseline
|
||||
# results
|
||||
# - Deallocate releases quartz resources
|
||||
stages:
|
||||
- setup
|
||||
- allocate
|
||||
- libs
|
||||
- build
|
||||
- test
|
||||
- deallocate
|
||||
- lassen_build
|
||||
- lassen_test
|
||||
- baseline_check
|
||||
- baseline_publish
|
||||
|
||||
quartz-baseline:
|
||||
stage: sub-pipelines
|
||||
# The setup job in setup stage don’t rely on MFEM git repo. It prepares a
|
||||
# pipeline-wide working directory downloading/updating external repos.
|
||||
# TODO: updating tests and tpls is not necessary anymore since pipelines are
|
||||
# now using unique directories so repo are never shared with another pipeline.
|
||||
# This is not memory efficient (we keep a lot of data), hence this reminder.
|
||||
# Setup
|
||||
setup:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
REBASELINE: "${REBASELINE}"
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/quartz-baseline.yml
|
||||
strategy: depend
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
|
||||
- if [ ! -d "tpls" ]; then git clone ${TPLS_REPO}; fi
|
||||
- if [ ! -d "tests" ]; then git clone ${TESTS_REPO}; fi
|
||||
- cd tpls && git pull && cd ..
|
||||
- cd tests && git pull && cd ..
|
||||
|
||||
lassen-build-and-test:
|
||||
stage: sub-pipelines
|
||||
# Share configurations (templates) for toolchain configuration.
|
||||
# Note: Any job using this template shouldn't redefine "before_script" key.
|
||||
.with_gcc_6_1_0:
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/lassen-build-and-test.yml
|
||||
strategy: depend
|
||||
TOOLCHAIN: gcc_6_1_0
|
||||
CXX: g++
|
||||
CC: gcc
|
||||
before_script:
|
||||
- module load gcc/6.1.0
|
||||
|
||||
corona-build-and-test:
|
||||
stage: sub-pipelines
|
||||
# On lassen
|
||||
.with_gcc_8_3_1:
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
# pipelines manually or using scheduling
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/corona-build-and-test.yml
|
||||
strategy: depend
|
||||
TOOLCHAIN: gcc_8_3_1
|
||||
CXX: g++
|
||||
CC: gcc
|
||||
before_script:
|
||||
- module load gcc/8.3.1
|
||||
|
||||
.with_gcc_4_9_3:
|
||||
variables:
|
||||
TOOLCHAIN: gcc_4_9_3
|
||||
CXX: g++
|
||||
CC: gcc
|
||||
before_script:
|
||||
- module load gcc/4.9.3
|
||||
|
||||
.if_srun_alloc_for_make: &if_srun_alloc_for_make |
|
||||
if [[ "${MPIEXEC}" == "srun" ]]
|
||||
then
|
||||
export JOB_ID=$(squeue -h --name=${MFEM_ALLOC_NAME} --format=%A)
|
||||
[[ -n "JOB_ID" ]] && export JOB_ID="--jobid=${JOB_ID}"
|
||||
RESOURCES="--extra-node-info=1:${MAKE_PAR}:1 --cpus-per-task=${MAKE_PAR} --ntasks=1"
|
||||
# Allocation prefix:
|
||||
export EXEC_PREFIX="srun ${JOB_ID} ${RESOURCES}"
|
||||
fi
|
||||
|
||||
# Build of dependencies and mfem:
|
||||
# if on quartz, uses a part of preallocated resources
|
||||
# Note: Those jobs don't rely on MFEM repository, hence the use of
|
||||
# "GIT_STRATEGY: none" preventing its clone.
|
||||
.build_hypre:
|
||||
variables:
|
||||
EXEC_PREFIX: ""
|
||||
GIT_STRATEGY: none
|
||||
stage: libs
|
||||
script:
|
||||
- cd ${BUILD_ROOT}/tpls
|
||||
- mkdir -p ${BUILD_PATH}
|
||||
- make clean
|
||||
- *if_srun_alloc_for_make
|
||||
- ${EXEC_PREFIX} make -j ${MAKE_PAR} hypre PREFIX=${BUILD_PATH}/hypre/src/ BUILD_DIR=${BUILD_PATH} LOG_DIR=${BUILD_PATH}
|
||||
|
||||
.build_metis:
|
||||
variables:
|
||||
EXEC_PREFIX: ""
|
||||
GIT_STRATEGY: none
|
||||
stage: libs
|
||||
script:
|
||||
- cd ${BUILD_ROOT}/tpls
|
||||
- mkdir -p ${BUILD_PATH}
|
||||
- *if_srun_alloc_for_make
|
||||
- ${EXEC_PREFIX} make -j ${MAKE_PAR} ${METIS} PREFIX=${BUILD_PATH}/ BUILD_DIR=${BUILD_PATH} LOG_DIR=${BUILD_PATH} CC=${CC} CXX=${CXX}
|
||||
|
||||
# Building MFEM
|
||||
.build_mfem:
|
||||
variables:
|
||||
EXEC_PREFIX: ""
|
||||
stage: build
|
||||
script:
|
||||
- mkdir -p ${BUILD_PATH}
|
||||
- cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_${MFEM_USE_MPI}_${MFEM_DEBUG}
|
||||
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_${MFEM_USE_MPI}_${MFEM_DEBUG}
|
||||
- *if_srun_alloc_for_make
|
||||
- make config CXX=${CXX} MPICXX=mpicxx MFEM_USE_MPI=${MFEM_USE_MPI} MFEM_DEBUG=${MFEM_DEBUG} MFEM_MPIEXEC="${EXEC_PREFIX}" MFEM_MPIEXEC_NP=${MPIEXEC_NP}
|
||||
- ${EXEC_PREFIX} make -j ${MAKE_PAR} all
|
||||
|
||||
# TODO: Could this phase use a parallel run?
|
||||
.sanitycheck_mfem:
|
||||
stage: test
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_${MFEM_USE_MPI}_${MFEM_DEBUG}
|
||||
- make test
|
||||
|
||||
# Shared script for baseline and sample-run-baseline, the value of BASELINE_TEST
|
||||
# differentiates between the two tests.
|
||||
.baseline_script: &baseline_script |
|
||||
# locals
|
||||
_glob_out=${BASELINE_TEST}.out
|
||||
_glob_err=${BASELINE_TEST}.err
|
||||
_base_diff=${BASELINE_TEST}-${SYS_TYPE}.diff
|
||||
_base_patch=${BASELINE_TEST}-${SYS_TYPE}.patch
|
||||
_base_out=${BASELINE_TEST}-${SYS_TYPE}.out
|
||||
|
||||
_out=${BASELINE_TEST}-${SYS_TYPE}.out
|
||||
_ref=../${BASELINE_TEST}-${SYS_TYPE}.saved
|
||||
_out_txt=${BASELINE_TEST}.txt
|
||||
_diff=${BASELINE_TEST}-diff.txt
|
||||
# prepare
|
||||
cd ${BUILD_ROOT}
|
||||
ln -snf ${CI_PROJECT_DIR} mfem
|
||||
cd tests
|
||||
mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
# run
|
||||
salloc --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${ADDITIONAL_DIR}"
|
||||
# post
|
||||
mkdir ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}
|
||||
if [[ -s ${_glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${_glob_err} file content";
|
||||
cat ${_glob_err}
|
||||
cp ${_glob_err} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_glob_err}.txt
|
||||
exit 1;
|
||||
elif [[ ! -f ${_base_patch} && ! -f ${_base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${_base_patch} or ${_base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${_base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${_base_patch} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_patch}.txt
|
||||
elif [[ -f ${_base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${_base_out} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_out}.txt
|
||||
fi
|
||||
# _base_diff won’t even exist if there is no difference.
|
||||
if [[ -f ${_base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${_base_diff}
|
||||
cp ${_base_diff} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_diff}.txt
|
||||
fi
|
||||
if [[ ! -s ${_base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
|
||||
# Actual templates for baseline checks
|
||||
.baselinecheck_mfem:
|
||||
stage: baseline_check
|
||||
variables:
|
||||
BASELINE_TEST: baseline
|
||||
ADDITIONAL_DIR: ${BUILD_ROOT}/tpls
|
||||
script:
|
||||
- *baseline_script
|
||||
artifacts:
|
||||
when: always
|
||||
paths:
|
||||
- ${ARTIFACTS_DIR}
|
||||
allow_failure: true
|
||||
|
||||
.samplebaselinecheck_mfem:
|
||||
stage: baseline_check
|
||||
variables:
|
||||
BASELINE_TEST: sample-runs-baseline
|
||||
ADDITIONAL_DIR: ""
|
||||
script:
|
||||
- *baseline_script
|
||||
timeout: 4h
|
||||
artifacts:
|
||||
when: always
|
||||
paths:
|
||||
- ${ARTIFACTS_DIR}
|
||||
allow_failure: true
|
||||
|
||||
# This job can only be manually triggers on a pipeline for master branch, or if
|
||||
# the pipeline was triggered with REBASELINE="YES"
|
||||
.rebaseline_mfem:
|
||||
stage: baseline_publish
|
||||
rules:
|
||||
- if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
|
||||
when: manual
|
||||
script:
|
||||
- export PATCH_FILE=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}.patch
|
||||
- export FULL_FILE=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}.out
|
||||
- export DIFF_FILE=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}.diff
|
||||
- cd ${BUILD_ROOT}/tests
|
||||
- |
|
||||
if [[ ! -f "${DIFF_FILE}.txt" ]]
|
||||
then
|
||||
echo "Nothing to be done: no relevant change in baseline"
|
||||
exit 0
|
||||
elif [[ -f "${PATCH_FILE}.txt" ]]
|
||||
then
|
||||
mv ${PATCH_FILE}.txt ${PATCH_FILE}
|
||||
patch "./baseline-${SYS_TYPE}.saved" < "${PATCH_FILE}"
|
||||
elif [[ -f "${FULL_FILE}.txt" ]]
|
||||
then
|
||||
cp "${FULL_FILE}.txt" "./baseline-${SYS_TYPE}.saved"
|
||||
else
|
||||
echo "File missing: expected ${PATCH_FILE}.txt or ${FULL_FILE}.txt"
|
||||
exit 1
|
||||
fi
|
||||
- git add baseline-${SYS_TYPE}.saved
|
||||
- git commit -m "${SYS_TYPE} rebaselined in GitLab pipeline ${CI_PIPELINE_ID}"
|
||||
- git push origin master
|
||||
|
||||
# The list on jobs is defined in machine-specific files.
|
||||
include:
|
||||
- local: .gitlab/quartz.yml
|
||||
- local: .gitlab/lassen.yml
|
||||
|
||||
@@ -1,94 +0,0 @@
|
||||
Finite Element Discretization Library
|
||||
__
|
||||
_ __ ___ / _| ___ _ __ ___
|
||||
| '_ ` _ \ | |_ / _ \| '_ ` _ \
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
|
||||
|
||||
This directory contains most of the GitLab CI configuration. MFEM runs both PR
|
||||
and nightly testing on GitLab.
|
||||
|
||||
# Structure
|
||||
|
||||
## Top level
|
||||
|
||||
The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo.
|
||||
This file only defines one stage, in which we trigger several
|
||||
sub-pipelines.
|
||||
|
||||
We use sub-pipelines to isolate the test for one combination of `machine`
|
||||
and `test type`.
|
||||
|
||||
Machines typically include:
|
||||
|
||||
* Quartz: Intel bi-socket x86
|
||||
* Lassen: Power9 + Nvidia GPU
|
||||
* Corona: AMD GPU
|
||||
|
||||
Test types include:
|
||||
|
||||
* Build and test: Spack driven build of dependencies, mfem build, mfem
|
||||
test
|
||||
* Baseline: Script driven build of dependencies, thorough testing
|
||||
|
||||
⚠️ The sub-pipeline design allows to add a new machine or a new test type without
|
||||
altering the scheduling, execution and displaying of the others.
|
||||
|
||||
## Sub-pipelines
|
||||
|
||||
Each file is this directory is the root configuration file for one
|
||||
sub-pipeline. The naming reflects the corresponding couple (`machine`,
|
||||
`test_type`).
|
||||
|
||||
Those files define the *stages* and the *jobs* for the sub-pipeline. They
|
||||
also contain any configuration that cannot be shared. For the most part
|
||||
though, the configuration is shared and is placed in `.gitlab/configs`.
|
||||
|
||||
We try to keep scripts out of the CI config and share them among similar
|
||||
jobs. They are gathered in `.gitlab/scripts`.
|
||||
|
||||
## Scripts
|
||||
|
||||
Scripts specific to the CI only are in `.gitlab/scripts`. It is best practice
|
||||
to keep scripts outside the CI configuration (no bash scripts embedded in a
|
||||
yaml file) because it helps with readability, maintenance and also with
|
||||
transition to another CI system.
|
||||
|
||||
⚠️ Most of the scripts there are driven by environment variables and do not have a
|
||||
usage function. This should be improved.
|
||||
|
||||
|
||||
# More testing
|
||||
|
||||
## Adding a new target to a build_and_test pipeline
|
||||
|
||||
`build_and_test` pipelines rely on Spack to install dependencies. Spack is
|
||||
driven by Uberenv which helps freezing Spack configuration: the goal being to
|
||||
point to specific commit in Spack and isolate its configuration so that it is
|
||||
not influenced by the user environment. More documentation about this can be
|
||||
found in `tests/gitlab`.
|
||||
|
||||
In the end, the MFEM target for which to build the dependencies is expressed
|
||||
with a spack spec of MFEM, within the limits permitted by the MFEM spack
|
||||
package.
|
||||
|
||||
In any build-and-test sub-pipeline a job basically consists in defining the
|
||||
spack spec to use. Adding a job on quartz for example resumes to:
|
||||
|
||||
```yaml
|
||||
<job_name>:
|
||||
variables:
|
||||
SPEC: "<spack_spec>"
|
||||
extends: .build_and_test_on_quartz
|
||||
```
|
||||
|
||||
The remaining and non trivial work is to make sure this spec is working. To
|
||||
test a spec before adding it, or reproduce a CI configuration, please refer to
|
||||
`tests/gitlab/reproduce-ci-jobs-interactively.md`.
|
||||
|
||||
⚠️ It is assumed that the spack spec applies to `mfem@develop`. That's why in the
|
||||
CI all the specs start with the compiler or the variants to apply to mfem. The
|
||||
mechanism still works with a full spec.
|
||||
@@ -1,36 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# We define the following GitLab pipeline variables:
|
||||
variables:
|
||||
|
||||
# The path to the shared resource between all jobs. For example, external
|
||||
# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
|
||||
# once for all targets, so that build happen here. The BUILD_ROOT is unique to
|
||||
# the pipeline, preventing any form of concurrency with other pipelines. This
|
||||
# also means that the BUILD_ROOT directory will never be cleaned.
|
||||
# TODO: add a clean-up mechanism
|
||||
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
|
||||
|
||||
# On LLNL's quartz, there is only one allocation shared among jobs in order to
|
||||
# save time and resource. This allocation has to be uniquely named so that we
|
||||
# are sure to retrieve it.
|
||||
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
|
||||
|
||||
# Git repositories used in the pipeline
|
||||
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
|
||||
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
|
||||
AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
|
||||
MFEM_DATA_REPO: https://github.com/mfem/data.git
|
||||
|
||||
# Directory used to place artifacts.
|
||||
ARTIFACTS_DIR: artifacts
|
||||
SLURM_OVERLAP: 1
|
||||
@@ -1,59 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipeline configuration for the Corona machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: corona
|
||||
|
||||
.on_corona:
|
||||
tags:
|
||||
- shell
|
||||
- corona
|
||||
rules:
|
||||
# Don't run corona jobs if...
|
||||
# Note: This makes corona an "opt-in" machine. To activate builds on corona
|
||||
# for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
|
||||
# "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
|
||||
# pipeline there.
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always release resource
|
||||
- if: '$CI_JOB_NAME =~ /release_resource/'
|
||||
when: always
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
# Default is to run if previous stage succeeded
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic corona build job, extending build script
|
||||
.build_and_test_on_corona:
|
||||
extends: [.on_corona]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=12
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -1,49 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Lassen machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: lassen
|
||||
|
||||
.on_lassen:
|
||||
tags:
|
||||
- shell
|
||||
- lassen
|
||||
rules:
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
- when: on_success
|
||||
|
||||
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
|
||||
# pre-allocation the same way slurm does. We use pdebug queue on lassen
|
||||
# to speed-up the allocation. However this would not be scalable to
|
||||
# multiple builds.
|
||||
.build_and_test_on_lassen:
|
||||
extends: [.on_lassen]
|
||||
stage: build_and_test
|
||||
script:
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
|
||||
- lalloc 1 -W 45 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
needs: [setup]
|
||||
@@ -1,55 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Quartz machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: quartz
|
||||
|
||||
.on_quartz:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
rules:
|
||||
# Don't run quartz jobs if...
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"'
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
when: never
|
||||
# Report success on success status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
|
||||
when: on_success
|
||||
# Report failure on failure status
|
||||
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
|
||||
when: on_failure
|
||||
# Always release resource
|
||||
- if: '$CI_JOB_NAME =~ /release_resource/'
|
||||
when: always
|
||||
# Always cleanup
|
||||
- if: '$CI_JOB_NAME =~ /cleanup/'
|
||||
when: always
|
||||
# Default is to run if previous stage succeeded
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic quartz build job, extending build script
|
||||
.build_and_test_on_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=12
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -1,77 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Jobs report
|
||||
.report_job_success:
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# Report SUCCESS while holding the file lock on 'autotest.lock'.
|
||||
# The next script uses the following environment variables:
|
||||
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
|
||||
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
|
||||
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
|
||||
err=$?
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
.report_job_failure:
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# Report FAILURE while holding the file lock on 'autotest.lock'.
|
||||
# The next script uses the following environment variables:
|
||||
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
|
||||
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
|
||||
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
|
||||
err=$?
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# The setup_baseline job doesn't rely on MFEM git repo. It prepares a
|
||||
# pipeline-wide working directory downloading/updating external repos.
|
||||
# TODO:
|
||||
# updating tests and tpls is not necessary anymore since pipelines are now
|
||||
# using unique directories so repo are never shared with another pipeline. This
|
||||
# is not memory efficient (we keep a lot of data), hence this reminder.
|
||||
setup_baseline:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
#
|
||||
# Setup ${BUILD_ROOT}/tpls and ${BUILD_ROOT}/tests:
|
||||
#
|
||||
- echo "MACHINE_NAME = ${MACHINE_NAME}"
|
||||
- echo "REBASELINE = ${REBASELINE}"
|
||||
- echo "AUTOTEST = ${AUTOTEST}"
|
||||
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
|
||||
- echo "BUILD_ROOT ${BUILD_ROOT}"
|
||||
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
|
||||
- if [ ! -d "tpls" ]; then git clone ${TPLS_REPO}; fi
|
||||
- if [ ! -d "tests" ]; then git clone ${TESTS_REPO}; fi
|
||||
- cd tpls && git pull && cd ..
|
||||
- cd tests && git pull origin && cd ..
|
||||
#
|
||||
# Setup ${AUTOTEST_ROOT}/autotest:
|
||||
#
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
|
||||
- command -v flock || echo "Required command 'flock' not found"
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# clone/update the autotest repo while holding the file lock on
|
||||
# 'autotest.lock'
|
||||
err=0
|
||||
if [[ ! -d "autotest" ]]; then
|
||||
git clone ${AUTOTEST_REPO}
|
||||
else
|
||||
cd autotest && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,90 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
|
||||
# script then symlinks the repo to the parent directory of the MFEM source
|
||||
# directory. Unit tests that depend on the mfem/data repo will then detect that
|
||||
# this directory is present and be enabled.
|
||||
setup:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
#
|
||||
# Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
|
||||
# and '.gitlab/configs/<machine>-config.yml'
|
||||
#
|
||||
- echo "MACHINE_NAME = ${MACHINE_NAME}"
|
||||
- echo "AUTOTEST = ${AUTOTEST}"
|
||||
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
|
||||
- echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
|
||||
- mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
|
||||
- command -v flock || echo "Required command 'flock' not found"
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
|
||||
# try every 5 seconds; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
done
|
||||
echo "Acquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
# clone/update the mfem/data repo while holding the file lock on
|
||||
# 'mfem-data.lock'
|
||||
err=0
|
||||
if [[ ! -d "mfem-data" ]]; then
|
||||
git clone ${MFEM_DATA_REPO} "mfem-data"
|
||||
else
|
||||
cd "mfem-data" && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> mfem-data.lock
|
||||
#
|
||||
# Setup ${AUTOTEST_ROOT}/autotest:
|
||||
#
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# clone/update the autotest repo while holding the file lock on
|
||||
# 'autotest.lock'
|
||||
err=0
|
||||
if [[ ! -d "autotest" ]]; then
|
||||
git clone ${AUTOTEST_REPO}
|
||||
else
|
||||
cd autotest && git pull && cd ..
|
||||
fi || err=1
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
@@ -1,67 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- allocate_resource
|
||||
- build_and_test
|
||||
- release_resource_and_report
|
||||
|
||||
# Slurm shared allocation
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_corona
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --partition=mi60 --time=45 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
needs: [setup]
|
||||
|
||||
# Build and test jobs, simply provide a spec
|
||||
rocm_gcc_8.3.1:
|
||||
variables:
|
||||
SPEC: "@develop%gcc@8.3.1+rocm amdgpu_target=gfx906"
|
||||
extends: .build_and_test_on_corona
|
||||
needs: [allocate_resource]
|
||||
|
||||
# Release slurm allocation
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_corona
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
|
||||
needs: [rocm_gcc_8.3.1]
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_corona
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_corona
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/corona-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -1,44 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: report
|
||||
extends:
|
||||
- .on_lassen
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: report
|
||||
extends:
|
||||
- .on_lassen
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/lassen-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -0,0 +1,57 @@
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Lassen machine at LLNL
|
||||
|
||||
.on_lassen:
|
||||
tags:
|
||||
- shell
|
||||
- lassen
|
||||
variables:
|
||||
PLAT: lassen
|
||||
|
||||
# Build MFEM
|
||||
build_mfem_ser_lassen:
|
||||
extends: [.with_gcc_8_3_1, .on_lassen]
|
||||
needs: [setup]
|
||||
stage: lassen_build
|
||||
script:
|
||||
- mkdir -p ${BUILD_PATH}
|
||||
- cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
|
||||
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
|
||||
- lalloc 1 -W 5 -q pdebug make -j cuda CUDA_ARCH=sm_70
|
||||
|
||||
build_mfem_debug_ser_lassen:
|
||||
extends: [.with_gcc_8_3_1, .on_lassen]
|
||||
needs: [setup]
|
||||
stage: lassen_build
|
||||
script:
|
||||
- mkdir -p ${BUILD_PATH}
|
||||
- cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
|
||||
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
|
||||
- lalloc 1 -W 5 -q pdebug make -j cuda MFEM_DEBUG="YES" CPPFLAGS=-O2 CUDA_ARCH=sm_70
|
||||
|
||||
# Sanity check
|
||||
sanitycheck_mfem_ser_lassen:
|
||||
extends: [.with_gcc_8_3_1, .on_lassen]
|
||||
stage: lassen_test
|
||||
needs: [build_mfem_ser_lassen]
|
||||
script:
|
||||
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
|
||||
- lalloc 1 -W 15 -q pdebug make -j test
|
||||
|
||||
sanitycheck_mfem_debug_ser_lassen:
|
||||
extends: [.with_gcc_8_3_1, .on_lassen]
|
||||
stage: lassen_test
|
||||
needs: [build_mfem_debug_ser_lassen]
|
||||
script:
|
||||
- cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
|
||||
- lalloc 1 -W 30 -q pdebug make -j test
|
||||
@@ -1,135 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
variables:
|
||||
BASELINE_TEST: baseline
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- baseline_check
|
||||
- baseline_report
|
||||
- cleanup
|
||||
- baseline_publish
|
||||
|
||||
baselinecheck_mfem_intel_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_check
|
||||
variables:
|
||||
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
|
||||
# when call the runtest script in MFEM test repo.
|
||||
# Note: the value must be consistent with the setup performed in
|
||||
# .gitlab/configs/setup-baseline.yml.
|
||||
TPLS_DIR: ${BUILD_ROOT}/tpls
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${TPLS_DIR}
|
||||
# Used by the tests in MFEM/tests:
|
||||
- export MFEM_TEST_NP=32
|
||||
# The next script uses the following environment variables:
|
||||
# * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
|
||||
# * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
|
||||
- .gitlab/scripts/baseline
|
||||
artifacts:
|
||||
when: always
|
||||
paths:
|
||||
- ${ARTIFACTS_DIR}
|
||||
allow_failure: true
|
||||
|
||||
cleanup:
|
||||
extends: .on_quartz
|
||||
stage: cleanup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
|
||||
- make -C "${CI_PROJECT_DIR}" distclean
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_report
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
- echo ${AUTOTEST}
|
||||
- echo ${AUTOTEST_COMMIT}
|
||||
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
|
||||
- cd ${AUTOTEST_ROOT}
|
||||
- |
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
# ----------------------
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
err=$?
|
||||
# ----------------------
|
||||
# sleep for a period to allow NFS to propagate the above changes;
|
||||
# clearly, there is no guarantee that other NFS clients will see the
|
||||
# changes even after the timeout
|
||||
sleep 10
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
baselinepublish_mfem_quartz:
|
||||
extends: [.on_quartz]
|
||||
stage: baseline_publish
|
||||
rules:
|
||||
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
|
||||
- if: '$REBASELINE == "YES"'
|
||||
when: manual
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${PWD}
|
||||
- echo ${ARTIFACTS_DIR}
|
||||
- ls -lA ${ARTIFACTS_DIR}
|
||||
- .gitlab/scripts/rebaseline
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/quartz-config.yml
|
||||
- local: .gitlab/configs/setup-baseline.yml
|
||||
@@ -1,94 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
stages:
|
||||
- setup
|
||||
- allocate_resource
|
||||
- build_and_test
|
||||
- release_resource_and_report
|
||||
|
||||
# Allocate
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --partition=pdebug --time=45 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
|
||||
|
||||
# Jobs report
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_quartz
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_quartz
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/quartz-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -0,0 +1,145 @@
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Quartz machine at LLNL
|
||||
|
||||
.on_quartz:
|
||||
tags:
|
||||
- shell
|
||||
- quartz
|
||||
variables:
|
||||
PLAT: quartz
|
||||
MPIEXEC: srun
|
||||
MPIEXEC_NP: "-n"
|
||||
MAKE_PAR: 6
|
||||
BASELINE_PAR: 18
|
||||
|
||||
# Allocate
|
||||
allocate_quartz:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: allocate
|
||||
script:
|
||||
- |
|
||||
if [[ "${MPIEXEC}" == "srun" ]]
|
||||
then
|
||||
salloc --nodes=1 --extra-node-info=2:18:1 --partition=pdebug --time=30 --no-shell --job-name=${MFEM_ALLOC_NAME}
|
||||
fi
|
||||
timeout: 6h
|
||||
|
||||
# Release
|
||||
deallocate_quartz:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_quartz
|
||||
stage: deallocate
|
||||
script:
|
||||
- |
|
||||
if [[ "${MPIEXEC}" == "srun" ]]
|
||||
then
|
||||
export JOB_ID=$(squeue -h --name=${MFEM_ALLOC_NAME} --format=%A)
|
||||
([[ -n "${JOB_ID}" ]] && scancel ${JOB_ID})
|
||||
fi
|
||||
when: always
|
||||
|
||||
# Build external libraries (tpls)
|
||||
build_hypre_gcc_6_1_0_quartz:
|
||||
extends: [.build_hypre, .with_gcc_6_1_0, .on_quartz]
|
||||
|
||||
build_parmetis_gcc_6_1_0_quartz:
|
||||
extends: [.build_metis, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
METIS: parmetis
|
||||
|
||||
build_metis4_gcc_6_1_0_quartz:
|
||||
extends: [.build_metis, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
METIS: metis4
|
||||
|
||||
build_metis5_gcc_6_1_0_quartz:
|
||||
extends: [.build_metis, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
METIS: metis5
|
||||
allow_failure: true
|
||||
|
||||
# Build MFEM
|
||||
build_mfem_debug_ser_gcc_4_9_3_quartz:
|
||||
extends: [.build_mfem, .with_gcc_4_9_3, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "YES"
|
||||
MFEM_USE_MPI: "NO"
|
||||
|
||||
build_mfem_debug_ser_gcc_6_1_0_quartz:
|
||||
extends: [.build_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "YES"
|
||||
MFEM_USE_MPI: "NO"
|
||||
|
||||
build_mfem_debug_par_gcc_6_1_0_quartz:
|
||||
extends: [.build_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "YES"
|
||||
MFEM_USE_MPI: "YES"
|
||||
needs: [build_hypre_gcc_6_1_0_quartz, build_parmetis_gcc_6_1_0_quartz]
|
||||
|
||||
build_mfem_opt_ser_gcc_6_1_0_quartz:
|
||||
extends: [.build_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "NO"
|
||||
MFEM_USE_MPI: "NO"
|
||||
|
||||
build_mfem_opt_par_gcc_6_1_0_quartz:
|
||||
extends: [.build_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "NO"
|
||||
MFEM_USE_MPI: "YES"
|
||||
needs: [build_hypre_gcc_6_1_0_quartz, build_parmetis_gcc_6_1_0_quartz]
|
||||
|
||||
### Tests
|
||||
|
||||
# Sanity check
|
||||
sanitycheck_mfem_debug_ser_gcc_4_9_3_quartz:
|
||||
extends: [.sanitycheck_mfem, .with_gcc_4_9_3, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "YES"
|
||||
MFEM_USE_MPI: "NO"
|
||||
needs: [build_mfem_debug_ser_gcc_4_9_3_quartz, allocate_quartz]
|
||||
|
||||
sanitycheck_mfem_debug_ser_gcc_6_1_0_quartz:
|
||||
extends: [.sanitycheck_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "YES"
|
||||
MFEM_USE_MPI: "NO"
|
||||
needs: [build_mfem_debug_ser_gcc_6_1_0_quartz, allocate_quartz]
|
||||
|
||||
sanitycheck_opt_ser_mfem_gcc_6_1_0_quartz:
|
||||
extends: [.sanitycheck_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "NO"
|
||||
MFEM_USE_MPI: "NO"
|
||||
needs: [build_mfem_opt_ser_gcc_6_1_0_quartz, allocate_quartz]
|
||||
|
||||
sanitycheck_opt_par_mfem_gcc_6_1_0_quartz:
|
||||
extends: [.sanitycheck_mfem, .with_gcc_6_1_0, .on_quartz]
|
||||
variables:
|
||||
MFEM_DEBUG: "NO"
|
||||
MFEM_USE_MPI: "YES"
|
||||
needs: [build_mfem_opt_par_gcc_6_1_0_quartz, allocate_quartz]
|
||||
|
||||
# Baseline
|
||||
baselinecheck_mfem_intel_quartz:
|
||||
extends: [.baselinecheck_mfem, .on_quartz]
|
||||
needs: [allocate_quartz]
|
||||
|
||||
baselinepublish_mfem_quartz:
|
||||
extends: [.rebaseline_mfem, .on_quartz]
|
||||
needs: [baselinecheck_mfem_intel_quartz]
|
||||
@@ -1,75 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# locals
|
||||
glob_err=${BASELINE_TEST}.err
|
||||
base=${BASELINE_TEST}-${SYS_TYPE}
|
||||
base_diff=${base}.diff
|
||||
base_patch=${base}.patch
|
||||
base_out=${base}.out
|
||||
artifacts_path=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}
|
||||
|
||||
# prepare
|
||||
cd ${BUILD_ROOT} || \
|
||||
{ echo "Invalid BUILD_ROOT=$BUILD_ROOT"; exit 1; }
|
||||
ln -snf ${CI_PROJECT_DIR} mfem
|
||||
cd tests
|
||||
[[ -d _${BASELINE_TEST} ]] && rm -rf _${BASELINE_TEST}
|
||||
mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
salloc --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
|
||||
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
status=0
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
if [[ -s ${glob_err} ]]; then
|
||||
echo "ERROR during ${BASELINE_TEST} execution"
|
||||
echo "Here is the ${glob_err} file content"
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
status=1
|
||||
fi
|
||||
if [[ -f ${base_patch} ]]; then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]; then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]; then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
status=1
|
||||
fi
|
||||
if [[ $status -eq 0 ]]; then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
fi
|
||||
exit $status
|
||||
@@ -1,41 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Try to push to the remote 5 times. If the push fails, and the local and remote
|
||||
# have diverged, then pull from the remote to merge changes, and try pushing
|
||||
# again. If some other failure happens
|
||||
for i in {1..5}; do
|
||||
git push origin master && exit 0
|
||||
# Wait for 20 seconds in case someone else is pushing to the remote
|
||||
# concurrently
|
||||
sleep 20
|
||||
# Fetch any updates from the remote
|
||||
git remote update
|
||||
# Get the latest commit on the local branch
|
||||
LOCAL=$(git rev-parse @)
|
||||
# Get the latest commit on the remote
|
||||
REMOTE=$(git rev-parse @{u})
|
||||
# Get the common ancestor
|
||||
BASE=$(git merge-base @ @{u})
|
||||
# Have the local and remote diverged?
|
||||
if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
|
||||
git pull
|
||||
if [[ $? == 0 ]]; then
|
||||
continue
|
||||
else
|
||||
exit 1 # Something else went wrong trying to pull
|
||||
fi
|
||||
fi
|
||||
done
|
||||
|
||||
exit 1 # Did not succeed in 5 attempts
|
||||
@@ -1,49 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# There will be collision between corona and quartz baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}
|
||||
#ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}-${MACHINE_NAME}
|
||||
|
||||
PATCH_FILE=${ARTIFACT_PATH}.patch
|
||||
FULL_FILE=${ARTIFACT_PATH}.out
|
||||
DIFF_FILE=${ARTIFACT_PATH}.diff
|
||||
|
||||
# There will be collision between corona and quartz baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
SAVED_NAME=baseline-${SYS_TYPE}.saved
|
||||
#SAVED_NAME=baseline-${SYS_TYPE}-${MACHINE_NAME}.saved
|
||||
|
||||
cd ${BUILD_ROOT}/tests
|
||||
|
||||
if [[ ! -f "${DIFF_FILE}" ]]
|
||||
then
|
||||
echo "Nothing to be done: no relevant change in baseline"
|
||||
exit 0
|
||||
elif [[ -f "${PATCH_FILE}" ]]
|
||||
then
|
||||
patch "${SAVED_NAME}" < "${PATCH_FILE}"
|
||||
elif [[ -f "${FULL_FILE}" ]]
|
||||
then
|
||||
cp "${FULL_FILE}" "${SAVED_NAME}"
|
||||
else
|
||||
echo "File missing: expected ${PATCH_FILE} or ${FULL_FILE}"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
git add "${SAVED_NAME}"
|
||||
git commit -m "${SYS_TYPE} (${MACHINE_NAME}) rebaselined in GitLab pipeline ${CI_PIPELINE_ID}"
|
||||
git push origin master
|
||||
@@ -1,45 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
echo "Runs if there was at least one failure on ${MACHINE_NAME}"
|
||||
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
|
||||
|
||||
printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
|
||||
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
|
||||
|
||||
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
# Create 'autotest-email.html' to indicate failure:
|
||||
cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
|
||||
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
echo "Can only run if all the ${MACHINE_NAME} jobs passed"
|
||||
|
||||
cd ${AUTOTEST_ROOT}/autotest || \
|
||||
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
|
||||
|
||||
printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
|
||||
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
|
||||
|
||||
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
echo "Content of '$file'"
|
||||
echo "******************************"
|
||||
cat $file
|
||||
echo "******************************"
|
||||
done
|
||||
rm -rf ${rundir} || true
|
||||
fi
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# This script takes a seed for a directory name and appends it with a counter
|
||||
# incremented until it can create a new directory with it.
|
||||
|
||||
# Usage:
|
||||
#
|
||||
# Expects 1 argument: a string that is use as a seed for the directory name.
|
||||
#
|
||||
# > rundir="desired_name"
|
||||
# > rundir=$(./safe_create_rundir $rundir)
|
||||
|
||||
set -o errexit
|
||||
set -o nounset
|
||||
|
||||
rundir=${1:-""}
|
||||
if [[ -z ${rundir} ]]; then
|
||||
>&2 echo "The script expects a string as argument for directory creation."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
if ! mkdir ${rundir}; then
|
||||
n=1
|
||||
while ! mkdir ${rundir}_${n}
|
||||
do
|
||||
n=$((n+1))
|
||||
done
|
||||
rundir=${rundir}_${n}
|
||||
fi
|
||||
|
||||
echo $rundir
|
||||
+469
@@ -0,0 +1,469 @@
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
language: cpp
|
||||
|
||||
os: linux
|
||||
dist: bionic
|
||||
|
||||
stages:
|
||||
- checks
|
||||
- tests
|
||||
- optional
|
||||
|
||||
env:
|
||||
global:
|
||||
- HYPRE_ARCHIVE=v2.19.0.tar.gz
|
||||
HYPRE_URL=https://github.com/hypre-space/hypre/archive/$HYPRE_ARCHIVE
|
||||
HYPRE_TOP_DIR=hypre-2.19.0
|
||||
|
||||
jobs:
|
||||
include:
|
||||
|
||||
# ========================
|
||||
# Checks
|
||||
# ========================
|
||||
# - code-style
|
||||
# - documentation
|
||||
# - gitignore
|
||||
|
||||
- stage: checks
|
||||
os: linux
|
||||
dist: xenial
|
||||
name: "code-style"
|
||||
addons:
|
||||
apt:
|
||||
packages:
|
||||
- astyle=2.05.1-0ubuntu1
|
||||
script:
|
||||
- cd ${TRAVIS_BUILD_DIR}
|
||||
- cd tests/scripts
|
||||
- ./runtest code-style
|
||||
|
||||
- stage: checks
|
||||
os: linux
|
||||
name: "documentation"
|
||||
addons:
|
||||
apt:
|
||||
packages:
|
||||
- doxygen
|
||||
- graphviz
|
||||
script:
|
||||
- cd ${TRAVIS_BUILD_DIR}
|
||||
- cd tests/scripts
|
||||
- ./runtest documentation
|
||||
|
||||
- stage: checks
|
||||
os: linux
|
||||
name: "gitignore"
|
||||
addons:
|
||||
apt:
|
||||
packages:
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
env: MPI=YES
|
||||
before_script:
|
||||
- cd ${TRAVIS_BUILD_DIR}
|
||||
- mpicxx -v
|
||||
- make config MFEM_USE_MPI=YES MFEM_MPI_NP=2
|
||||
- make all -j3
|
||||
- make test-noclean
|
||||
script:
|
||||
- cd tests/scripts
|
||||
- ./runtest gitignore
|
||||
cache:
|
||||
ccache: true
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
|
||||
rm -f Lib/*.{c,o}
|
||||
|
||||
# ========================
|
||||
# Optional Checks/Tests
|
||||
# ========================
|
||||
# - branch-history
|
||||
|
||||
- stage: optional
|
||||
name: "branch-history"
|
||||
if: branch != next
|
||||
# need full git history for the binary/big files check
|
||||
git:
|
||||
depth: false
|
||||
script:
|
||||
- cd ${TRAVIS_BUILD_DIR}
|
||||
# update master
|
||||
- git fetch origin master:master
|
||||
# checkout a branch (otherwise Travis works in detached head)
|
||||
- git checkout -b travis_tests
|
||||
- cd tests/scripts
|
||||
- ./runtest branch-history
|
||||
|
||||
# ========================
|
||||
# Linux tests
|
||||
# ========================
|
||||
# - serial + debug
|
||||
# - serial
|
||||
# - parallel + debug
|
||||
# - parallel
|
||||
|
||||
- stage: tests
|
||||
os: linux
|
||||
compiler: gcc
|
||||
name: "Linux: Serial + Debug"
|
||||
env: DEBUG=YES
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
cache:
|
||||
ccache: true
|
||||
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
name: "Linux: Serial"
|
||||
env: DEBUG=NO
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=test
|
||||
cache:
|
||||
ccache: true
|
||||
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
name: "Linux: Parallel + Debug"
|
||||
addons:
|
||||
apt:
|
||||
# sources:
|
||||
# - ubuntu-toolchain-r-test
|
||||
packages:
|
||||
# GCC 4.9
|
||||
# - g++-4.9
|
||||
# MPICH
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
# OpenMPI
|
||||
# - openmpi-bin
|
||||
# - libopenmpi-dev
|
||||
env: DEBUG=YES
|
||||
MPI=YES
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
NPROCS=2
|
||||
cache:
|
||||
ccache: true
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
|
||||
rm -f Lib/*.{c,o}
|
||||
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
name: "Linux: Parallel"
|
||||
addons:
|
||||
apt:
|
||||
# sources:
|
||||
# - ubuntu-toolchain-r-test
|
||||
packages:
|
||||
# GCC 4.9
|
||||
# - g++-4.9
|
||||
# MPICH
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
# OpenMPI
|
||||
# - openmpi-bin
|
||||
# - libopenmpi-dev
|
||||
env: DEBUG=NO
|
||||
MPI=YES
|
||||
CODECOV=YES
|
||||
MFEM_TEST_TARGET=test
|
||||
NPROCS=2
|
||||
cache:
|
||||
ccache: true
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
|
||||
rm -f Lib/*.{c,o}
|
||||
|
||||
- os: linux
|
||||
compiler: gcc
|
||||
name: "Linux: Parallel (cmake)"
|
||||
addons:
|
||||
apt:
|
||||
packages:
|
||||
- mpich
|
||||
- libmpich-dev
|
||||
env: MPI=YES
|
||||
NPROCS=2
|
||||
script:
|
||||
- cd ${TRAVIS_BUILD_DIR}
|
||||
- mkdir ${TRAVIS_BUILD_DIR}/build
|
||||
- cd ${TRAVIS_BUILD_DIR}/build
|
||||
- cmake ..
|
||||
-DMFEM_USE_MPI=ON
|
||||
-DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../$HYPRE_TOP_DIR/src/hypre
|
||||
-DMFEM_MPI_NP=$NPROCS
|
||||
- make -j3 mfem examples
|
||||
- cd ${TRAVIS_BUILD_DIR}/build/tests/unit
|
||||
- make -j3
|
||||
- ctest --output-on-failure
|
||||
cache:
|
||||
ccache: true
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
|
||||
rm -f Lib/*.{c,o}
|
||||
|
||||
# ========================
|
||||
# Mac OS X tests
|
||||
# ========================
|
||||
# - serial + debug
|
||||
# - serial
|
||||
# - parallel + debug
|
||||
# - parallel
|
||||
|
||||
- os: osx
|
||||
osx_image: xcode11.2
|
||||
compiler: clang
|
||||
name: "Mac: Serial + Debug"
|
||||
addons:
|
||||
homebrew:
|
||||
packages:
|
||||
- ccache
|
||||
env: DEBUG=YES
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
cache:
|
||||
ccache: true
|
||||
|
||||
- os: osx
|
||||
osx_image: xcode11.2
|
||||
compiler: clang
|
||||
name: "Mac: Serial"
|
||||
addons:
|
||||
homebrew:
|
||||
packages:
|
||||
- ccache
|
||||
env: DEBUG=NO
|
||||
MPI=NO
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=test
|
||||
cache:
|
||||
ccache: true
|
||||
|
||||
- os: osx
|
||||
osx_image: xcode11.2
|
||||
compiler: clang
|
||||
name: "Mac: Parallel + Debug"
|
||||
addons:
|
||||
homebrew:
|
||||
packages:
|
||||
- ccache
|
||||
env: DEBUG=YES
|
||||
MPI=YES
|
||||
CODECOV=NO
|
||||
MFEM_TEST_TARGET=check
|
||||
NPROCS=4
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
ccache: true
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
|
||||
rm -f Lib/*.{c,o}
|
||||
|
||||
- os: osx
|
||||
osx_image: xcode11.2
|
||||
compiler: clang
|
||||
name: "Mac: Parallel"
|
||||
addons:
|
||||
homebrew:
|
||||
packages:
|
||||
- ccache
|
||||
env: DEBUG=NO
|
||||
MPI=YES
|
||||
CODECOV=YES
|
||||
MFEM_TEST_TARGET=test
|
||||
NPROCS=4
|
||||
TMPDIR=/tmp
|
||||
cache:
|
||||
ccache: true
|
||||
directories:
|
||||
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
|
||||
- $TRAVIS_BUILD_DIR/../metis-4.0
|
||||
- $HOME/local-cached
|
||||
before_cache:
|
||||
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
|
||||
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
|
||||
rm -f Lib/*.{c,o}
|
||||
|
||||
before_install:
|
||||
# No addon for brew yet, have to install OSX packages this way.
|
||||
# - if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
|
||||
# brew install open-mpi;
|
||||
# fi
|
||||
|
||||
# Disable ccache while building dependencies that are cached:
|
||||
- echo "before \$PATH = $PATH";
|
||||
export PATH=${PATH//\/usr\/lib\/ccache:/};
|
||||
echo "after \$PATH = $PATH"
|
||||
|
||||
# On Mac OS X, build and cache OpenMPI 2.1.6:
|
||||
- if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
|
||||
if [ ! -e $HOME/local-cached/bin/mpicc ]; then
|
||||
mkdir -p $HOME/builds && cd $HOME/builds &&
|
||||
wget https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.6.tar.bz2 &&
|
||||
tar jxf openmpi-2.1.6.tar.bz2 &&
|
||||
mkdir openmpi-build && cd openmpi-build &&
|
||||
../openmpi-2.1.6/configure --prefix=$HOME/local-cached &&
|
||||
make -j3 all && make install;
|
||||
fi;
|
||||
PATH=$HOME/local-cached/bin:$PATH;
|
||||
cd $TRAVIS_BUILD_DIR;
|
||||
fi
|
||||
|
||||
# Update environment to find g++ 4.9 installation first.
|
||||
# - if [ $TRAVIS_OS_NAME == "linux" ]; then
|
||||
# mkdir -p latest-gcc-symlinks;
|
||||
# ln -s /usr/bin/g++-4.9 latest-gcc-symlinks/g++;
|
||||
# ln -s /usr/bin/gcc-4.9 latest-gcc-symlinks/gcc;
|
||||
# ln -s /usr/bin/gcov-4.9 latest-gcc-symlinks/gcov;
|
||||
# export PATH=$PWD/latest-gcc-symlinks:$PATH;
|
||||
# fi
|
||||
|
||||
# Install tool to upload code coverage reports to coveralls.io
|
||||
- if [ "$CODECOV" == "YES" ]; then
|
||||
export PYTHONUSERBASE=$HOME/local;
|
||||
pip install --user cpp-coveralls;
|
||||
pip install --user pyyaml;
|
||||
PATH=$HOME/local/bin:$PATH;
|
||||
fi
|
||||
|
||||
install:
|
||||
# Set MPI compilers, print compiler version
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ "$TRAVIS_OS_NAME" == "linux" ]; then
|
||||
export MPICH_CC="$CC";
|
||||
export MPICH_CXX="$CXX";
|
||||
else
|
||||
export OMPI_CC="$CC";
|
||||
export OMPI_CXX="$CXX";
|
||||
mpic++ --showme:version;
|
||||
fi;
|
||||
mpic++ -v;
|
||||
else
|
||||
$CXX -v;
|
||||
fi
|
||||
|
||||
# Back out of the mfem directory to install the libraries
|
||||
- cd ..
|
||||
|
||||
# hypre
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e $HYPRE_TOP_DIR/src/hypre/lib/libHYPRE.a ]; then
|
||||
wget $HYPRE_URL;
|
||||
rm -rf $HYPRE_TOP_DIR;
|
||||
tar xvzf $HYPRE_ARCHIVE;
|
||||
cd $HYPRE_TOP_DIR/src;
|
||||
./configure --disable-fortran CC=mpicc CXX=mpic++;
|
||||
make -j3;
|
||||
cd ../..;
|
||||
else
|
||||
echo "Reusing cached $HYPRE_TOP_DIR/";
|
||||
fi;
|
||||
ln -s $HYPRE_TOP_DIR hypre;
|
||||
else
|
||||
echo "Serial build, not using hypre";
|
||||
fi
|
||||
|
||||
# METIS, use a mirror because the original source server is not always up.
|
||||
# Original url:
|
||||
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz
|
||||
- if [ $MPI == "YES" ]; then
|
||||
if [ ! -e metis-4.0/libmetis.a ]; then
|
||||
wget https://mfem.github.io/tpls/metis-4.0.3.tar.gz;
|
||||
tar xvzf metis-4.0.3.tar.gz;
|
||||
make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
|
||||
rm -rf metis-4.0;
|
||||
mv metis-4.0.3 metis-4.0;
|
||||
else
|
||||
echo "Reusing cached metis-4.0/";
|
||||
fi;
|
||||
fi
|
||||
|
||||
# Re-enable ccache on linux; enable ccache on mac os:
|
||||
- if [ $TRAVIS_OS_NAME == "linux" ]; then
|
||||
export PATH="/usr/lib/ccache:$PATH";
|
||||
else
|
||||
if [ $TRAVIS_OS_NAME == "osx" ]; then
|
||||
export PATH="/usr/local/opt/ccache/libexec:$PATH";
|
||||
fi;
|
||||
fi
|
||||
|
||||
- printf "which \$CC = "; which $CC;
|
||||
printf "which \$CXX = "; which $CXX
|
||||
|
||||
script:
|
||||
# Compiler
|
||||
- if [ $MPI == "YES" ]; then
|
||||
export MYCXX=mpic++;
|
||||
export MAKE_CXX_FLAG=MPICXX=$MYCXX;
|
||||
else
|
||||
export MYCXX="$CXX";
|
||||
export MAKE_CXX_FLAG=CXX=$MYCXX;
|
||||
fi
|
||||
|
||||
# Print the compiler version
|
||||
- $MYCXX -v
|
||||
|
||||
# Set some variables
|
||||
- cd $TRAVIS_BUILD_DIR;
|
||||
CPPFLAGS="";
|
||||
SKIP_TEST_DIRS="";
|
||||
if [ "$CODECOV" == "YES" ]; then
|
||||
CPPFLAGS="--coverage -g";
|
||||
fi;
|
||||
if [ "$TRAVIS_OS_NAME" != "linux" ] || [ "$DEBUG" == "YES" ]; then
|
||||
CPPFLAGS+=" -pedantic -Wall -Werror";
|
||||
fi
|
||||
|
||||
# Configure the library
|
||||
- make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG $MAKE_CXX_FLAG
|
||||
MFEM_MPI_NP=$NPROCS CPPFLAGS="$CPPFLAGS"
|
||||
# Show the configuration
|
||||
- make info
|
||||
# Build the library
|
||||
- make -j3
|
||||
# Build the examples and the miniapps
|
||||
- make -j3 all
|
||||
# Run tests
|
||||
- make $MFEM_TEST_TARGET SKIP_TEST_DIRS="$SKIP_TEST_DIRS"
|
||||
|
||||
after_success:
|
||||
- if [ "$CODECOV" == "YES" ]; then
|
||||
coveralls --include fem --include general --include linalg --include
|
||||
mesh --exclude /usr --gcov-options '\-lp' --root $TRAVIS_BUILD_DIR;
|
||||
fi
|
||||
@@ -1,66 +0,0 @@
|
||||
cff-version: 1.2.0
|
||||
message: "If you use MFEM, please cite it as follows."
|
||||
authors:
|
||||
- family-names: "MFEM Team"
|
||||
title: "MFEM: Modular Finite Element Methods [Software]"
|
||||
doi: 10.11578/dc.20171025.1248
|
||||
url: "https://mfem.org"
|
||||
preferred-citation:
|
||||
type: article
|
||||
authors:
|
||||
- family-names: "Anderson"
|
||||
given-names: "Robert"
|
||||
orcid: "https://orcid.org/0000-0002-3508-9944"
|
||||
- family-names: "Andrej"
|
||||
given-names: "Julian"
|
||||
orcid: "https://orcid.org/0000-0001-7661-4840"
|
||||
- family-names: "Barker"
|
||||
given-names: "Andrew"
|
||||
orcid: "https://orcid.org/0000-0003-3572-911X"
|
||||
- family-names: "Bramwell"
|
||||
given-names: "Jamie"
|
||||
- family-names: "Camier"
|
||||
given-names: "Jean-Sylvain"
|
||||
orcid: "https://orcid.org/0000-0003-2421-1999"
|
||||
- family-names: "Cerveny"
|
||||
given-names: "Jakub"
|
||||
orcid: "https://orcid.org/0000-0003-4231-2531"
|
||||
- family-names: "Dobrev"
|
||||
given-names: "Veselin"
|
||||
orcid: "https://orcid.org/0000-0003-1793-5622"
|
||||
- family-names: "Dudouit"
|
||||
given-names: "Yohann"
|
||||
orcid: "https://orcid.org/0000-0001-5831-561X"
|
||||
- family-names: "Fisher"
|
||||
given-names: "Aaron"
|
||||
- family-names: "Kolev"
|
||||
given-names: "Tzanio"
|
||||
orcid: "https://orcid.org/0000-0002-2810-3090"
|
||||
- family-names: "Pazner"
|
||||
given-names: "Will"
|
||||
orcid: "https://orcid.org/0000-0003-4885-2934"
|
||||
- family-names: "Stowell"
|
||||
given-names: "Mark"
|
||||
orcid: "https://orcid.org/0000-0002-5389-7435"
|
||||
- family-names: "Tomov"
|
||||
given-names: "Vladimir"
|
||||
orcid: "https://orcid.org/0000-0002-1846-6816"
|
||||
- family-names: "Akkerman"
|
||||
given-names: "Ido"
|
||||
orcid: "https://orcid.org/0000-0002-5937-0300"
|
||||
- family-names: "Dahm"
|
||||
given-names: "Johann"
|
||||
orcid: "https://orcid.org/0000-0001-9657-3564"
|
||||
- family-names: "Medina"
|
||||
given-names: "David"
|
||||
- family-names: "Zampini"
|
||||
given-names: "Stefano"
|
||||
orcid: "https://orcid.org/0000-0002-0435-0433"
|
||||
doi: "10.1016/j.camwa.2020.06.009"
|
||||
journal: "Computers \\& Mathematics with Applications"
|
||||
month: 1
|
||||
start: 42 # First page number
|
||||
end: 74 # Last page number
|
||||
title: "MFEM: A Modular Finite Element Methods Library"
|
||||
volume: 81
|
||||
year: 2021
|
||||
+70
-251
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -9,11 +9,7 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
|
||||
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
|
||||
# Version 3.8 or newer is required for direct CUDA support.
|
||||
cmake_minimum_required(VERSION 3.8)
|
||||
message(STATUS "CMake version: ${CMAKE_VERSION}")
|
||||
cmake_minimum_required(VERSION 2.8.11)
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
@@ -25,11 +21,8 @@ set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
# Load user settings before the defaults - this way the defaults will not
|
||||
# overwrite the user set options. If the user has not set all options, we still
|
||||
# have the defaults.
|
||||
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
|
||||
if (USER_CONFIG_LOADED)
|
||||
set(USER_CONFIG_LOADED "LOADED")
|
||||
endif()
|
||||
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
|
||||
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
|
||||
include("${USER_CONFIG}" OPTIONAL)
|
||||
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
|
||||
|
||||
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
|
||||
@@ -57,7 +50,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.6.1)
|
||||
set(${PROJECT_NAME}_VERSION 4.1.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -72,7 +65,8 @@ set(XSDK_ENABLE_C OFF)
|
||||
set(XSDK_ENABLE_Fortran OFF)
|
||||
|
||||
# Check if we need to enable C or Fortran.
|
||||
if (MFEM_USE_CONDUIT OR
|
||||
if (CMAKE_VERSION VERSION_LESS 3.2 OR
|
||||
MFEM_USE_CONDUIT OR
|
||||
MFEM_USE_SIDRE OR
|
||||
MFEM_USE_PETSC)
|
||||
# This seems to be needed by:
|
||||
@@ -82,40 +76,25 @@ if (MFEM_USE_CONDUIT OR
|
||||
# * find_package(PETSc REQUIRED)
|
||||
set(XSDK_ENABLE_C ON)
|
||||
endif()
|
||||
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
|
||||
if ((MFEM_USE_SUNDIALS OR
|
||||
MFEM_USE_STRUMPACK OR
|
||||
MFEM_USE_GINKGO OR
|
||||
MFEM_USE_RAJA OR
|
||||
MFEM_USE_UMPIRE) AND
|
||||
("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
set(CMAKE_CXX_STANDARD 14)
|
||||
endif()
|
||||
|
||||
# Include xSDK default CMake file.
|
||||
include("${CMAKE_CURRENT_SOURCE_DIR}/config/XSDKDefaults.cmake")
|
||||
|
||||
# Enable languages.
|
||||
enable_language(CXX)
|
||||
if (MINGW)
|
||||
# MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
|
||||
# 25/25p) unless we use '-std=gnu++11':
|
||||
set(CMAKE_CXX_EXTENSIONS ON)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
if (MFEM_USE_HIP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
|
||||
endif()
|
||||
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
|
||||
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
|
||||
# Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
|
||||
if (NOT CMAKE_CUDA_HOST_COMPILER)
|
||||
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
enable_language(CUDA)
|
||||
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CUDA_FLAGS "--expt-extended-lambda")
|
||||
@@ -138,11 +117,10 @@ if (MFEM_USE_CUDA)
|
||||
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
|
||||
"CUDA flags set for MFEM" FORCE)
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
set(CUBLAS_FOUND TRUE)
|
||||
set(CUBLAS_LIBRARIES "cublas")
|
||||
endif()
|
||||
|
||||
if (XSDK_ENABLE_C)
|
||||
@@ -187,66 +165,10 @@ else()
|
||||
set(MFEM_DEBUG OFF)
|
||||
endif()
|
||||
|
||||
# Shared build on Windows
|
||||
if (WIN32 AND BUILD_SHARED_LIBS)
|
||||
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
|
||||
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
|
||||
"Automatically export symbols for shared Windows DLL build")
|
||||
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
|
||||
# the build directory, so that the .exe files can find the .dll files at
|
||||
# runtime:
|
||||
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
|
||||
# Note: CMake tests are run from the build-tree sub-directory where the test
|
||||
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
|
||||
# work fine.
|
||||
# Not strictly necessary:
|
||||
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
endif()
|
||||
|
||||
# AMD HIP
|
||||
if (MFEM_USE_HIP)
|
||||
if (HIP_ARCH)
|
||||
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
|
||||
set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for")
|
||||
endif()
|
||||
if (ROCM_PATH)
|
||||
list(INSERT CMAKE_PREFIX_PATH 0 ${ROCM_PATH})
|
||||
endif()
|
||||
find_package(HIP REQUIRED)
|
||||
find_package(HIPSPARSE REQUIRED)
|
||||
endif()
|
||||
|
||||
# OpenMP
|
||||
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
|
||||
if(APPLE)
|
||||
# On macOS, the compiler needs additional help to find the <omp.h> header.
|
||||
# See issue #2642 for more information.
|
||||
set(OPENMP_INCLUDE_DIRS ${OpenMP_CXX_INCLUDE_DIRS})
|
||||
endif(APPLE)
|
||||
if (OPENMP_FOUND)
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MPI -> hypre; PETSc (optional)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MPI REQUIRED)
|
||||
set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
|
||||
if (MFEM_MPIEXEC)
|
||||
string(REPLACE " " ";" MPIEXEC ${MFEM_MPIEXEC})
|
||||
endif()
|
||||
if (MFEM_MPIEXEC_NP)
|
||||
string(REPLACE " " ";" MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
|
||||
endif()
|
||||
# Parallel MFEM depends on hypre
|
||||
find_package(HYPRE REQUIRED)
|
||||
set(MFEM_HYPRE_VERSION ${HYPRE_VERSION})
|
||||
@@ -263,7 +185,7 @@ if (MFEM_USE_MPI)
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(PKGS_NEED_MPI SUPERLU MUMPS PETSC SLEPC STRUMPACK PUMI)
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC SLEPC STRUMPACK PUMI)
|
||||
foreach(PKG IN LISTS PKGS_NEED_MPI)
|
||||
if (MFEM_USE_${PKG})
|
||||
message(STATUS "Disabling package ${PKG} - requires MPI")
|
||||
@@ -302,6 +224,14 @@ if (MFEM_USE_LAPACK)
|
||||
find_package(LAPACK REQUIRED)
|
||||
endif()
|
||||
|
||||
# OpenMP
|
||||
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
endif()
|
||||
|
||||
# SuiteSparse (before SUNDIALS which may depend on KLU)
|
||||
if (MFEM_USE_SUITESPARSE)
|
||||
find_package(SuiteSparse REQUIRED
|
||||
@@ -317,12 +247,14 @@ if (MFEM_USE_SUNDIALS)
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
if (MFEM_USE_HIP)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
# Mesquite
|
||||
if (MFEM_USE_MESQUITE)
|
||||
find_package(Mesquite REQUIRED)
|
||||
endif()
|
||||
|
||||
# SuperLU_DIST can only be enabled in parallel
|
||||
if (MFEM_USE_SUPERLU)
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -332,16 +264,6 @@ if (MFEM_USE_SUPERLU)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MUMPS can only be enabled in parallel
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# STRUMPACK can only be enabled in parallel
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -380,11 +302,7 @@ if (MFEM_USE_AMGX)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CONDUIT)
|
||||
find_package(Conduit REQUIRED conduit relay blueprint)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_FMS)
|
||||
find_package(FMS REQUIRED fms)
|
||||
find_package(Conduit REQUIRED conduit relay blueprint )
|
||||
endif()
|
||||
|
||||
# Axom/Sidre
|
||||
@@ -396,7 +314,7 @@ endif()
|
||||
if (MFEM_USE_PUMI)
|
||||
# If PUMI_DIR was specified, only link to that directory,
|
||||
# i.e. don't link to another installation in /usr/lib by mistake
|
||||
find_package(SCOREC 2.2.6 REQUIRED OPTIONAL_COMPONENTS gmi_sim
|
||||
find_package(SCOREC 2.1.0 REQUIRED OPTIONAL_COMPONENTS gmi_sim
|
||||
CONFIG PATHS ${PUMI_DIR} NO_DEFAULT_PATH)
|
||||
if (SCOREC_FOUND)
|
||||
# Define a header file with the MFEM_USE_SIMMETRIX preprocessor variable
|
||||
@@ -408,33 +326,12 @@ if (MFEM_USE_PUMI)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Moonolith
|
||||
if(MFEM_USE_MOONOLITH)
|
||||
find_package(ParMoonolith REQUIRED)
|
||||
if(ParMoonolith_FOUND)
|
||||
get_target_property(
|
||||
MOONOLITH_INCLUDE_DIRS ParMoonolith::par_moonolith
|
||||
INTERFACE_INCLUDE_DIRECTORIES)
|
||||
set(MOONOLITH_FOUND TRUE)
|
||||
set(MOONOLITH_LIBRARIES ParMoonolith::par_moonolith)
|
||||
message(
|
||||
STATUS
|
||||
"MOONOLITH_LIBRARIES=${MOONOLITH_LIBRARIES}, MOONOLITH_INCLUDE_DIRS=${MOONOLITH_INCLUDE_DIRS}")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# HiOp optimizer
|
||||
if (MFEM_USE_HIOP)
|
||||
find_package(HIOP REQUIRED)
|
||||
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
|
||||
endif()
|
||||
|
||||
# CoDiPack package
|
||||
if (MFEM_USE_CODIPACK)
|
||||
find_package(CODIPACK REQUIRED)
|
||||
# find_package updates CODIPACK_FOUND, CODIPACK_INCLUDE_DIRS, CODIPACK_LIBRARIES
|
||||
endif()
|
||||
|
||||
# OCCA
|
||||
if (MFEM_USE_OCCA)
|
||||
find_package(OCCA REQUIRED)
|
||||
@@ -450,48 +347,17 @@ if (MFEM_USE_UMPIRE)
|
||||
find_package(UMPIRE REQUIRED)
|
||||
endif()
|
||||
|
||||
# GOOGLE-BENCHMARK
|
||||
if (MFEM_USE_BENCHMARK)
|
||||
find_package(Benchmark REQUIRED)
|
||||
endif()
|
||||
|
||||
# Caliper
|
||||
if (MFEM_USE_CALIPER)
|
||||
find_package(Caliper REQUIRED)
|
||||
endif()
|
||||
|
||||
# Algoim
|
||||
if (MFEM_USE_ALGOIM)
|
||||
find_package(Algoim REQUIRED)
|
||||
endif()
|
||||
|
||||
# ADIOS2 for parallel I/O
|
||||
if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
# MKL CPardiso
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MKL Pardiso
|
||||
if (MFEM_USE_MKL_PARDISO)
|
||||
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
endif()
|
||||
|
||||
# Enzyme
|
||||
if (MFEM_USE_ENZYME)
|
||||
find_package(ENZYME REQUIRED)
|
||||
endif()
|
||||
|
||||
# MFEM_TIMER_TYPE
|
||||
if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
if (APPLE)
|
||||
@@ -510,30 +376,15 @@ if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Without this, CMake 3.21.1 (and 3.20.2) run into CMake Errors like the following:
|
||||
# CMake Error at config/cmake/modules/MfemCmakeUtilities.cmake:60 (add_library):
|
||||
# Target "mfem" links to target "Threads::Threads" but the target was not
|
||||
# found. Perhaps a find_package() call is missing for an IMPORTED target, or
|
||||
# an ALIAS target is missing?
|
||||
# Call Stack (most recent call first):
|
||||
# CMakeLists.txt:474 (mfem_add_library)
|
||||
#
|
||||
# NOTE: We need to figure out which TPL library adds the dependency on
|
||||
# "Threads::Threads" and call the next line only when that TPL library is
|
||||
# enabled. -V. Dobrev
|
||||
find_package(Threads REQUIRED)
|
||||
|
||||
# List all possible libraries in order of dependencies.
|
||||
# [METIS < SuiteSparse]:
|
||||
# With newer versions of SuiteSparse which include METIS header using 64-bit
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
|
||||
SLEPC MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
|
||||
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
|
||||
CUSPARSE MKL_CPARDISO AMGX)
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
set(TPL_INCLUDE_DIRS "")
|
||||
@@ -544,13 +395,16 @@ foreach(TPL IN LISTS MFEM_TPLS)
|
||||
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_LIBRARIES)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
|
||||
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
|
||||
include_directories(${TPL_INCLUDE_DIRS})
|
||||
|
||||
if (OPENMP_FOUND)
|
||||
message(STATUS "MFEM: using package OpenMP")
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
|
||||
endif()
|
||||
|
||||
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
|
||||
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
|
||||
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
@@ -563,17 +417,14 @@ message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
set(SOURCES "")
|
||||
set(HEADERS "")
|
||||
set(MFEM_SOURCE_DIRS general linalg mesh fem)
|
||||
|
||||
if(MFEM_USE_MOONOLITH)
|
||||
set(MFEM_SOURCE_DIRS ${MFEM_SOURCE_DIRS} fem/moonolith)
|
||||
endif()
|
||||
|
||||
foreach(DIR IN LISTS MFEM_SOURCE_DIRS)
|
||||
add_subdirectory(${DIR})
|
||||
endforeach()
|
||||
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${SOURCES} PROPERTIES LANGUAGE CUDA)
|
||||
foreach(file IN LISTS SOURCES)
|
||||
set_property(SOURCE ${file} PROPERTY LANGUAGE CUDA)
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
add_subdirectory(config)
|
||||
@@ -592,33 +443,16 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX} CACHE PATH
|
||||
"The MFEM install directory" FORCE)
|
||||
|
||||
# Declaring the library
|
||||
mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
if (CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
else()
|
||||
target_link_libraries(mfem ${TPL_LIBRARIES})
|
||||
endif()
|
||||
if (MINGW)
|
||||
target_link_libraries(mfem PRIVATE ws2_32)
|
||||
target_link_libraries(mfem ws2_32)
|
||||
endif()
|
||||
if (MSVC)
|
||||
target_compile_options(mfem PUBLIC "/wd4819")
|
||||
endif()
|
||||
message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
|
||||
target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
|
||||
# The INSTALL_INTERFACE is handled below
|
||||
${TPL_INCLUDE_DIRS})
|
||||
if (MFEM_USE_MPI)
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
@@ -630,7 +464,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
|
||||
"${PROJECT_BINARY_DIR}/config/_config.hpp")
|
||||
@@ -654,24 +487,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
set(MFEM_CUSTOM_TARGET_PREFIX CACHE STRING "")
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Examples, miniapps, benchmarks and testing
|
||||
# Examples, miniapps, and testing
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
# Enable testing and benchmarks if required
|
||||
# Enable testing if required
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
enable_testing()
|
||||
set(MFEM_ALL_TESTS_TARGET_NAME tests)
|
||||
add_mfem_target(${MFEM_ALL_TESTS_TARGET_NAME} OFF)
|
||||
add_subdirectory(tests EXCLUDE_FROM_ALL)
|
||||
|
||||
# Create a target for all benchmarks and, optionally, enable it.
|
||||
set(MFEM_ALL_BENCHMARKS_TARGET_NAME benchmarks)
|
||||
add_mfem_target(${MFEM_ALL_BENCHMARKS_TARGET_NAME}
|
||||
${MFEM_ENABLE_GOOGLE_BENCHMARKS})
|
||||
add_subdirectory(tests/benchmarks EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
|
||||
# Define a target that all examples and miniapps will depend on.
|
||||
@@ -681,11 +506,7 @@ add_custom_target(${MFEM_EXEC_PREREQUISITES_TARGET_NAME})
|
||||
# Create a target for all examples and, optionally, enable it.
|
||||
set(MFEM_ALL_EXAMPLES_TARGET_NAME examples)
|
||||
add_mfem_target(${MFEM_ALL_EXAMPLES_TARGET_NAME} ${MFEM_ENABLE_EXAMPLES})
|
||||
if (MFEM_ENABLE_EXAMPLES)
|
||||
add_subdirectory(examples) #install examples if enabled
|
||||
else()
|
||||
add_subdirectory(examples EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
add_subdirectory(examples EXCLUDE_FROM_ALL)
|
||||
|
||||
# Create a target for all miniapps and, optionally, enable it.
|
||||
set(MFEM_ALL_MINIAPPS_TARGET_NAME miniapps)
|
||||
@@ -695,7 +516,6 @@ add_subdirectory(miniapps EXCLUDE_FROM_ALL)
|
||||
# Target to build all executables, i.e. everything.
|
||||
add_custom_target(exec)
|
||||
add_dependencies(exec
|
||||
${MFEM_ALL_BENCHMARKS_TARGET_NAME}
|
||||
${MFEM_ALL_EXAMPLES_TARGET_NAME}
|
||||
${MFEM_ALL_MINIAPPS_TARGET_NAME}
|
||||
${MFEM_ALL_TESTS_TARGET_NAME})
|
||||
@@ -717,17 +537,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Add 'check' target - quick test
|
||||
set(MFEM_CHECK_TARGET_NAME ${MFEM_CUSTOM_TARGET_PREFIX}check)
|
||||
if (NOT MFEM_USE_MPI)
|
||||
add_custom_target(${MFEM_CHECK_TARGET_NAME}
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1_ser\" -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(${MFEM_CHECK_TARGET_NAME} ex1)
|
||||
add_dependencies(check ex1)
|
||||
else()
|
||||
add_custom_target(${MFEM_CHECK_TARGET_NAME}
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1p\" -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(${MFEM_CHECK_TARGET_NAME} ex1p)
|
||||
add_dependencies(check ex1p)
|
||||
endif()
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
@@ -742,18 +561,12 @@ add_subdirectory(doc)
|
||||
message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
|
||||
set(INSTALL_INCLUDE_DIR include
|
||||
CACHE PATH "Relative path for installing header files.")
|
||||
set(INSTALL_BIN_DIR bin
|
||||
CACHE PATH "Relative path for installing the binaries.")
|
||||
set(INSTALL_LIB_DIR lib
|
||||
CACHE PATH "Relative path for installing the library.")
|
||||
# other options: "share/mfem/cmake", "lib/mfem/cmake"
|
||||
set(INSTALL_CMAKE_DIR lib/cmake/mfem
|
||||
CACHE PATH "Relative path for installing cmake config files.")
|
||||
|
||||
target_include_directories(mfem BEFORE
|
||||
PUBLIC
|
||||
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
|
||||
|
||||
# The 'install' target will not depend on 'all'.
|
||||
# set(CMAKE_SKIP_INSTALL_ALL_DEPENDENCY TRUE)
|
||||
|
||||
@@ -762,9 +575,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
|
||||
# Install the library
|
||||
install(TARGETS ${PROJECT_NAME}
|
||||
EXPORT ${PROJECT_NAME_UC}Targets
|
||||
RUNTIME DESTINATION ${INSTALL_BIN_DIR}
|
||||
LIBRARY DESTINATION ${INSTALL_LIB_DIR}
|
||||
ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
|
||||
DESTINATION ${INSTALL_LIB_DIR})
|
||||
|
||||
# Install the master headers
|
||||
foreach(Header mfem.hpp mfem-performance.hpp)
|
||||
@@ -789,7 +600,7 @@ endif()
|
||||
if (MFEM_USE_CEED)
|
||||
install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "fem/ceed/integrators/*/*.h")
|
||||
FILES_MATCHING PATTERN "fem/libceed/*.h")
|
||||
endif()
|
||||
|
||||
# Install ${HEADERS}
|
||||
@@ -802,8 +613,10 @@ endif()
|
||||
|
||||
# Install the configuration header files
|
||||
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
|
||||
RENAME config.hpp)
|
||||
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
|
||||
|
||||
# Package the whole thing up nicely
|
||||
@@ -818,8 +631,14 @@ export(TARGETS ${PROJECT_NAME}
|
||||
# TODO: How do we register the install-tree? Replacing the build-tree?
|
||||
export(PACKAGE ${PROJECT_NAME})
|
||||
|
||||
# Extract the include directories required to use MFEM
|
||||
get_target_property(MFEM_TPL_INCLUDE_DIRS mfem INCLUDE_DIRECTORIES)
|
||||
if (NOT MFEM_TPL_INCLUDE_DIRS)
|
||||
set(MFEM_TPL_INCLUDE_DIRS "")
|
||||
endif()
|
||||
|
||||
# This is the build-tree version
|
||||
set(INCLUDE_INSTALL_DIRS ${PROJECT_BINARY_DIR} ${TPL_INCLUDE_DIRS})
|
||||
set(INCLUDE_INSTALL_DIRS ${PROJECT_BINARY_DIR} ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(LIB_INSTALL_DIR ${PROJECT_BINARY_DIR})
|
||||
configure_package_config_file(config/cmake/MFEMConfig.cmake.in
|
||||
${CMAKE_CURRENT_BINARY_DIR}/MFEMConfig.cmake
|
||||
@@ -827,7 +646,7 @@ configure_package_config_file(config/cmake/MFEMConfig.cmake.in
|
||||
PATH_VARS INCLUDE_INSTALL_DIRS LIB_INSTALL_DIR)
|
||||
|
||||
# This is the version that will be installed
|
||||
set(INCLUDE_INSTALL_DIRS ${INSTALL_INCLUDE_DIR} ${TPL_INCLUDE_DIRS})
|
||||
set(INCLUDE_INSTALL_DIRS ${INSTALL_INCLUDE_DIR} ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(LIB_INSTALL_DIR ${INSTALL_LIB_DIR})
|
||||
configure_package_config_file(config/cmake/MFEMConfig.cmake.in
|
||||
${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/MFEMConfig.cmake
|
||||
|
||||
@@ -1,133 +0,0 @@
|
||||
# MFEM Code of Conduct
|
||||
|
||||
## Our Pledge
|
||||
|
||||
We as members, contributors, and leaders pledge to make participation in our
|
||||
community a harassment-free experience for everyone, regardless of age, body
|
||||
size, visible or invisible disability, ethnicity, sex characteristics, gender
|
||||
identity and expression, level of experience, education, socio-economic status,
|
||||
nationality, personal appearance, race, caste, color, religion, or sexual
|
||||
identity and orientation.
|
||||
|
||||
We pledge to act and interact in ways that contribute to an open, welcoming,
|
||||
diverse, inclusive, and healthy community.
|
||||
|
||||
## Our Standards
|
||||
|
||||
Examples of behavior that contributes to a positive environment for our
|
||||
community include:
|
||||
|
||||
* Demonstrating empathy and kindness toward other people
|
||||
* Being respectful of differing opinions, viewpoints, and experiences
|
||||
* Giving and gracefully accepting constructive feedback
|
||||
* Accepting responsibility and apologizing to those affected by our mistakes,
|
||||
and learning from the experience
|
||||
* Focusing on what is best not just for us as individuals, but for the overall
|
||||
community
|
||||
|
||||
Examples of unacceptable behavior include:
|
||||
|
||||
* The use of sexualized language or imagery, and sexual attention or advances of
|
||||
any kind
|
||||
* Trolling, insulting or derogatory comments, and personal or political attacks
|
||||
* Public or private harassment
|
||||
* Publishing others' private information, such as a physical or email address,
|
||||
without their explicit permission
|
||||
* Other conduct which could reasonably be considered inappropriate in a
|
||||
professional setting
|
||||
|
||||
## Enforcement Responsibilities
|
||||
|
||||
Community leaders are responsible for clarifying and enforcing our standards of
|
||||
acceptable behavior and will take appropriate and fair corrective action in
|
||||
response to any behavior that they deem inappropriate, threatening, offensive,
|
||||
or harmful.
|
||||
|
||||
Community leaders have the right and responsibility to remove, edit, or reject
|
||||
comments, commits, code, wiki edits, issues, and other contributions that are
|
||||
not aligned to this Code of Conduct, and will communicate reasons for moderation
|
||||
decisions when appropriate.
|
||||
|
||||
## Scope
|
||||
|
||||
This Code of Conduct applies within all community spaces, and also applies when
|
||||
an individual is officially representing the community in public spaces.
|
||||
Examples of representing our community include using an official e-mail address,
|
||||
posting via an official social media account, or acting as an appointed
|
||||
representative at an online or offline event.
|
||||
|
||||
## Enforcement
|
||||
|
||||
Instances of abusive, harassing, or otherwise unacceptable behavior may be
|
||||
reported to the community leaders responsible for enforcement at mfem@llnl.gov.
|
||||
All complaints will be reviewed and investigated promptly and fairly.
|
||||
|
||||
All community leaders are obligated to respect the privacy and security of the
|
||||
reporter of any incident. Anyone involved in the reported behavior will recuse
|
||||
themselves from the investigation and decision making about the resolution of
|
||||
the complaint.
|
||||
|
||||
## Enforcement Guidelines
|
||||
|
||||
Community leaders will follow these Community Impact Guidelines in determining
|
||||
the consequences for any action they deem in violation of this Code of Conduct:
|
||||
|
||||
### 1. Correction
|
||||
|
||||
**Community Impact**: Use of inappropriate language or other behavior deemed
|
||||
unprofessional or unwelcome in the community.
|
||||
|
||||
**Consequence**: A private, written warning from community leaders, providing
|
||||
clarity around the nature of the violation and an explanation of why the
|
||||
behavior was inappropriate. A public apology may be requested.
|
||||
|
||||
### 2. Warning
|
||||
|
||||
**Community Impact**: A violation through a single incident or series of
|
||||
actions.
|
||||
|
||||
**Consequence**: A warning with consequences for continued behavior. No
|
||||
interaction with the people involved, including unsolicited interaction with
|
||||
those enforcing the Code of Conduct, for a specified period of time. This
|
||||
includes avoiding interactions in community spaces as well as external channels
|
||||
like social media. Violating these terms may lead to a temporary or permanent
|
||||
ban.
|
||||
|
||||
### 3. Temporary Ban
|
||||
|
||||
**Community Impact**: A serious violation of community standards, including
|
||||
sustained inappropriate behavior.
|
||||
|
||||
**Consequence**: A temporary ban from any sort of interaction or public
|
||||
communication with the community for a specified period of time. No public or
|
||||
private interaction with the people involved, including unsolicited interaction
|
||||
with those enforcing the Code of Conduct, is allowed during this period.
|
||||
Violating these terms may lead to a permanent ban.
|
||||
|
||||
### 4. Permanent Ban
|
||||
|
||||
**Community Impact**: Demonstrating a pattern of violation of community
|
||||
standards, including sustained inappropriate behavior, harassment of an
|
||||
individual, or aggression toward or disparagement of classes of individuals.
|
||||
|
||||
**Consequence**: A permanent ban from any sort of public interaction within the
|
||||
community.
|
||||
|
||||
## Attribution
|
||||
|
||||
This Code of Conduct is adapted from the [Contributor Covenant][homepage],
|
||||
version 2.1, available at
|
||||
[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
|
||||
|
||||
Community Impact Guidelines were inspired by
|
||||
[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
|
||||
|
||||
For answers to common questions about this code of conduct, see the FAQ at
|
||||
[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
|
||||
[https://www.contributor-covenant.org/translations][translations].
|
||||
|
||||
[homepage]: https://www.contributor-covenant.org
|
||||
[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
|
||||
[Mozilla CoC]: https://github.com/mozilla/diversity
|
||||
[FAQ]: https://www.contributor-covenant.org/faq
|
||||
[translations]: https://www.contributor-covenant.org/translations
|
||||
+65
-204
@@ -1,14 +1,12 @@
|
||||
<p align="center">
|
||||
<a href="https://mfem.org/"><img alt="mfem" src="https://mfem.org/img/logo-300.png"></a>
|
||||
<a href="http://mfem.org/"><img alt="mfem" src="http://mfem.org/img/logo-300.png"></a>
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://travis-ci.org/mfem/mfem"><img alt="Build Status" src="https://travis-ci.org/mfem/mfem.svg?branch=master"></a>
|
||||
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
|
||||
<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
<a href="http://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
</p>
|
||||
|
||||
|
||||
@@ -21,9 +19,6 @@ documentation; new examples and miniapps; HPC performance improvements; etc.
|
||||
MFEM is distributed under the terms of the BSD-3 license. All new contributions
|
||||
must be made under this license.
|
||||
|
||||
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
|
||||
in the MFEM community, you agree to abide by its rules.
|
||||
|
||||
If you plan on contributing to MFEM, consider reviewing the
|
||||
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
|
||||
already exists for your desired feature or the bug you ran into. Use a pull
|
||||
@@ -31,7 +26,7 @@ request (PR) toward the `mfem:master` branch to propose your contribution. If
|
||||
you are planning significant code changes or have questions, you may want to
|
||||
open an [issue](https://github.com/mfem/mfem/issues) before issuing a PR. In
|
||||
addition to technical contributions, we are also interested in your results and
|
||||
[simulation images](https://mfem.org/gallery/), which you can share via a pull
|
||||
[simulation images](http://mfem.org/gallery/), which you can share via a pull
|
||||
request in the [mfem/web](https://github.com/mfem/web) repo.
|
||||
|
||||
See the [Quick Summary](#quick-summary) section for the main highlights of our
|
||||
@@ -45,7 +40,6 @@ back to them before issuing pull requests:
|
||||
- [New Feature Development](#new-feature-development)
|
||||
- [Developer Guidelines](#developer-guidelines)
|
||||
- [Pull Requests](#pull-requests)
|
||||
- [MFEM PR Rules](#mfem-pr-rules)
|
||||
- [Pull Request Checklist](#pull-request-checklist)
|
||||
- [Master/Next Workflow](#masternext-workflow)
|
||||
- [Releases](#releases)
|
||||
@@ -57,7 +51,7 @@ back to them before issuing pull requests:
|
||||
Contributing to MFEM requires knowledge of Git and, likely, finite elements. If
|
||||
you are new to Git, see the [GitHub learning
|
||||
resources](https://help.github.com/articles/git-and-github-learning-resources/).
|
||||
To learn more about the finite element method, see our [FEM page](https://mfem.org/fem).
|
||||
To learn more about the finite element method, see our [FEM page](http://mfem.org/fem).
|
||||
|
||||
*By submitting a pull request, you are affirming the [Developer's Certificate of
|
||||
Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
@@ -69,18 +63,14 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
development branches off `mfem:master`.
|
||||
- Please follow the [developer guidelines](#developer-guidelines), in particular
|
||||
with regards to documentation and code styling.
|
||||
- Please do not commit large/binary files to the central repository (use a fork
|
||||
instead).
|
||||
- Pull requests should be issued toward `mfem:master`. Make sure
|
||||
to check the items off the [Pull Request Checklist](#pull-request-checklist) and
|
||||
follow the [MFEM PR Rules](#mfem-pr-rules).
|
||||
- Pull requests should be issued toward `mfem:master`. Make sure
|
||||
to check the items off the [Pull Request Checklist](#pull-request-checklist).
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning two
|
||||
reviewers to evaluate the changes.
|
||||
- The reviewers have 3 weeks to evaluate the PR and work with the author to
|
||||
fix issues and implement improvements.
|
||||
- During review there should be no force pushes/rewriting history in the branch.
|
||||
- After approval, MFEM developers merge the PR manually in the [mfem:next branch](#masternext-workflow).
|
||||
- After a week of testing in `mfem:next`, the original PR is merged in `mfem:master`.
|
||||
- We use [milestones](https://github.com/mfem/mfem/milestones) to coordinate the
|
||||
@@ -101,65 +91,44 @@ The MFEM source code has the following structure:
|
||||
```
|
||||
.
|
||||
├── config
|
||||
│ ├── cmake
|
||||
│ ├── docker
|
||||
│ ├── githooks
|
||||
│ └── vcpkg
|
||||
│ └── cmake
|
||||
│ └── modules
|
||||
├── data
|
||||
├── doc
|
||||
│ └── web
|
||||
│ └── examples
|
||||
├── examples
|
||||
│ ├── amgx
|
||||
│ ├── caliper
|
||||
│ ├── ginkgo
|
||||
│ ├── hiop
|
||||
│ ├── jupyter
|
||||
│ ├── moonolith
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
│ └── sundials
|
||||
| └── superlu
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── integ
|
||||
│ ├── lor
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
│ └── tmop
|
||||
│ └── libceed
|
||||
├── general
|
||||
├── linalg
|
||||
│ └── simd
|
||||
├── mesh
|
||||
│ └── submesh
|
||||
├── miniapps
|
||||
│ ├── adjoint
|
||||
│ ├── autodiff
|
||||
│ ├── common
|
||||
│ ├── dpg
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
│ ├── multidomain
|
||||
│ ├── navier
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
│ ├── performance
|
||||
│ ├── shifted
|
||||
│ ├── solvers
|
||||
│ ├── spde
|
||||
│ ├── tools
|
||||
│ └── toys
|
||||
└── tests
|
||||
├── benchmarks
|
||||
├── convergence
|
||||
├── gitlab
|
||||
├── mem_manager
|
||||
├── par-mesh-format
|
||||
├── scripts
|
||||
└── unit
|
||||
├── unit
|
||||
│ ├── ...
|
||||
└── ...
|
||||
```
|
||||
|
||||
#### Main directories and classes
|
||||
@@ -169,24 +138,24 @@ classes implementing the finite element, mesh and linear algebra concepts
|
||||
respectively.
|
||||
|
||||
- The main mesh classes are:
|
||||
+ [`Mesh`](https://docs.mfem.org/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](https://docs.mfem.org/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](https://docs.mfem.org/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](https://docs.mfem.org/html/classmfem_1_1ElementTransformation.html)
|
||||
+ [`Mesh`](http://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](http://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](http://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
|
||||
|
||||
- The main finite element classes are:
|
||||
+ [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
|
||||
+ [`FiniteElement`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
|
||||
|
||||
- The main linear algebra classes and sources are
|
||||
+ [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
|
||||
+ [`Operator`](http://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](http://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
|
||||
#### Parallel implementation
|
||||
|
||||
@@ -196,13 +165,13 @@ shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
|
||||
- The main parallel classes are
|
||||
+ [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](https://docs.mfem.org/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://docs.mfem.org/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](https://docs.mfem.org/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://docs.mfem.org/html/hypre_8hpp.html)
|
||||
+ [`ParMesh`](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](http://mfem.github.io/doxygen/html/hypre_8hpp.html)
|
||||
|
||||
#### GPU and general device support
|
||||
|
||||
@@ -211,10 +180,10 @@ backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
+ [`Device`](http://mfem.github.io/doxygen/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](http://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
|
||||
+ the [`MFEM_FORALL`](http://mfem.github.io/doxygen/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](http://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](http://mfem.github.io/doxygen/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
- The `general/` directory contains C++ classes that serve as utilities for
|
||||
@@ -222,7 +191,8 @@ device/host memory manager.
|
||||
- The `config/` directory contains build-related files, both for the plain
|
||||
Makefile and the CMake build options.
|
||||
- The `doc/` directory contains configuration for the Doxygen code documentation
|
||||
that can either be built locally or browsed online at https://docs.mfem.org.
|
||||
that can either be built locally or browsed online at
|
||||
http://mfem.github.io/doxygen/html/index.html.
|
||||
|
||||
#### Examples and tests
|
||||
- `examples` and `miniapps` respectively gather simple and more fully-featured
|
||||
@@ -231,7 +201,7 @@ device/host memory manager.
|
||||
- The `tests/` directory contains a unit test suite and will later contain more
|
||||
tests that run example codes.
|
||||
|
||||
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
|
||||
See also the [code overview](http://mfem.org/code-overview/) section on the MFEM
|
||||
website.
|
||||
|
||||
## GitHub Workflow
|
||||
@@ -344,22 +314,15 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
change the code by default.
|
||||
|
||||
- Code specifics
|
||||
- All new public, protected, and private classes, methods, data members, and
|
||||
functions have Doxygen-style documentation in source comments.
|
||||
- In addition to arguments and functionality, documentation should include the
|
||||
current limitations of the code, any background information that is
|
||||
implicitly assumed in the implementation, and the ownership and lifetime
|
||||
of data.
|
||||
- All significant new classes, methods and functions have Doxygen-style
|
||||
documentation in source comments.
|
||||
- Consistent code styling is enforced with `make style` in the top-level
|
||||
directory. This requires [Artistic Style](http://astyle.sourceforge.net) (we
|
||||
specifically use version 3.1). See also the file `config/mfem.astylerc`.
|
||||
specifically use version 2.05.1). See also the file `config/mfem.astylerc`.
|
||||
- Use `mfem::out` and `mfem::err` instead of `std::cout` and `std::cerr` in
|
||||
internal library code. (You can use `std` in examples and miniapps.)
|
||||
- When manually resolving conflicts during a merge, make sure to mention the
|
||||
conflicted files in the commit message.
|
||||
- All significant new features and changes should be documented in CHANGELOG.
|
||||
- New examples and miniapps should have documentation on the MFEM webpage.
|
||||
|
||||
|
||||
### Pull Requests
|
||||
|
||||
@@ -396,10 +359,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
|
||||
the PR and work with the author to implement improvements and fix issues.
|
||||
|
||||
- Once the `ready-for-review` label has been applied and reviewers have been
|
||||
assigned, the PR is considered under review. To help with the review process
|
||||
there should be no force pushes/rewriting history in the branch.
|
||||
|
||||
- After approval, the PR is [tested](#masternext-workflow) for a week with
|
||||
other approved PRs in the `mfem:next` branch.
|
||||
|
||||
@@ -407,101 +366,20 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
`mfem:next`, see the [README](tests/scripts/README) file in that directory
|
||||
for more details.
|
||||
|
||||
- Track the GitHub Actions and Appveyor [continuous integration](#automated-testing)
|
||||
- Track the Travis CI and Appveyor [continuous integration](#automated-testing)
|
||||
builds at the end of the PR. These should generally run clean, so address any
|
||||
errors as soon as possible. Please ask if you are unsure how to do that.
|
||||
|
||||
- Note that some tests, such as the `branch-history` check in GitHub Actions
|
||||
are safeguards that are allowed to fail in certain cases.
|
||||
- Note that some tests, such as the `branch-history` check in Travis are
|
||||
safeguards that are allowed to fail in certain cases.
|
||||
|
||||
- Other tests, such as the `code-style`, `documentation` and `gitignore`
|
||||
checks in GitHub Actions enforce MFEM-specific rules which are explained in
|
||||
the error messages and the `tests/scripts` directory.
|
||||
|
||||
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
|
||||
Actions can be triggered automatically before each push using git hooks. See
|
||||
the [git hooks README](config/githooks/README.md) for a detailed explanation.
|
||||
checks in Travis enforce MFEM-specific rules which are explained in the
|
||||
error messages and the `tests/scripts` directory.
|
||||
|
||||
- If triggered, track the status of the LLNL GitLab tests. If failing, ask
|
||||
one of the _LLNL developers_ for details.
|
||||
|
||||
|
||||
### MFEM PR Rules
|
||||
|
||||
The Pull Request (PR) approval process in MFEM is similar to the approval of papers in a peer-reviewed journal. In particular:
|
||||
|
||||
1. There is an MFEM board of "editors" that evaluates new PRs and assigns "reviewers" for each PR.
|
||||
|
||||
2. The assigned reviewers are responsible to carefully review and test the proposed PR.
|
||||
|
||||
3. A PR can be (manually) merged in the *next* branch only if 2 of the assigned reviewers have approved it and it has passed internal testing. This merge can be performed by any of the assigned reviewers or by any of the editors.
|
||||
|
||||
4. A PR can be merged in the *master* branch only if it has been tested successfully for a week in *next* and an editor has (optionally) taken a final look. This merge can be performed only by one of the editors.
|
||||
|
||||
#### Responsibilities of Editors
|
||||
|
||||
The current list of MFEM editors is:
|
||||
|
||||
- [@v-dobrev](https://github.com/v-dobrev) (Veselin Dobrev)
|
||||
- [@tzanio](https://github.com/tzanio) (Tzanio Kolev)
|
||||
- [@pazner](https://github.com/pazner) (Will Pazner)
|
||||
- [@mlstowell](https://github.com/mlstowell) (Mark Stowell)
|
||||
|
||||
**The responsibilities of the editors are:**
|
||||
|
||||
1. To assign appropriate milestone and labels for new PRs, e.g. *bugfix*, *minor*, *api-change*, *high-impact*, etc.
|
||||
|
||||
2. To assign at least 2 reviewers for new PRs. An editor can also be a reviewer. The editor, reviewers, and author should be listed as "Assignees" on the GitHub PR page. After assignment, the `in-review` label should be added.
|
||||
|
||||
3. To complete the initial PR evaluation and assignments in a timely manner: 1 week from submission.
|
||||
|
||||
4. To assist reviewers when they need help with their reviews (but also to stay out of the way when they don't).
|
||||
|
||||
5. To remind the reviewers about timely completion of their review.
|
||||
|
||||
6. To take a final look and complete the PR merge in *master*. The final look step is optional and shouldn't take more than 3 days.
|
||||
|
||||
7. The assignment of bugfixes should be expedited proportional to their importance, e.g. in some cases the editor can assign much shorter review window.
|
||||
|
||||
#### Responsibilities of Reviewers
|
||||
|
||||
Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their area of expertise.
|
||||
|
||||
**The responsibilities of the reviewers are:**
|
||||
|
||||
1. To let the editors know if the proposed assignment is not a good match for them.
|
||||
|
||||
2. To communicate with the PR author, provide feedback and work with them to resolve issues.
|
||||
|
||||
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
|
||||
|
||||
3. To seek help from the editors in case of difficulties.
|
||||
|
||||
4. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
|
||||
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
|
||||
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
|
||||
#### Responsibilities of Authors
|
||||
|
||||
Authors should clearly indicate when a PR is ready for review (before that the PR should be marked as `Draft` or `[WIP]`).
|
||||
|
||||
**The responsibilities of the authors are:**
|
||||
|
||||
1. To follow the instructions and PR checklist in the `CONTRIBUTING.md` document in the MFEM repository.
|
||||
|
||||
2. To respond to reviewer feedback in a timely manner.
|
||||
|
||||
3. Authors are encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
4. Authors can use the "Reviewers" section of the GitHub PR page to suggest reviewers, but the "Assignees" section will show who the editor has assigned to do the reviews.
|
||||
|
||||
5. To indicate when the PR is ready for review by adding the `ready-for-review` label.
|
||||
|
||||
|
||||
### Pull Request Checklist
|
||||
|
||||
Before a PR can be merged, it should satisfy the following:
|
||||
@@ -517,7 +395,7 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
|
||||
- [ ] `.github`
|
||||
- [ ] `.travis.yml`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update `.gitignore`:
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
@@ -547,7 +425,6 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
|
||||
- [ ] Consider adding a new test for the new miniapp.
|
||||
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
@@ -555,9 +432,7 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New capability:
|
||||
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
|
||||
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
|
||||
- [ ] Any new functions should include descriptions of their intended use e.g. for internal use only, user-facing, etc., along with references to example code whenever possible/appropriate.
|
||||
- [ ] All significant new classes, methods and functions have Doxygen-style documentation in source comments.
|
||||
- [ ] Consider adding new sample runs in existing examples to highlight the new capability.
|
||||
- [ ] Consider saving cool simulation pictures with the new capability in the Confluence gallery (LLNL only) or submitting them, via pull request, to the gallery section of the `mfem/web` repo.
|
||||
- [ ] If this is a major new feature, consider mentioning it in the short summary inside `README` *(rare)*.
|
||||
@@ -566,9 +441,9 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Run `make unittest` to make sure all unit tests pass.
|
||||
- [ ] Run the tests in `tests/scripts`.
|
||||
- [ ] (LLNL only) After merging:
|
||||
- [ ] Regenerate `README.html` files from companion documentation pull requests.
|
||||
- [ ] Update internal tests to include the new features.
|
||||
|
||||
|
||||
### Master/Next Workflow
|
||||
|
||||
MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
@@ -637,12 +512,9 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Check that version requirements for each of MFEM's dependencies are documented in `INSTALL` and up-to-date
|
||||
- [ ] Check that continuous integration server configurations reflect the dependency version requirements of the new release
|
||||
- [ ] `.github`
|
||||
- [ ] `.travis.yml`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update the `CHANGELOG` to organize all release contributions
|
||||
- [ ] Review the whole source code once over
|
||||
- [ ] Ask MFEM-based applications to test the pre-release branch
|
||||
- [ ] Test on additional platforms and compilers
|
||||
- [ ] (LLNL only) Make sure all `README.html` files in the source repo are up to date.
|
||||
- [ ] Tag the repository:
|
||||
|
||||
```
|
||||
@@ -651,9 +523,9 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
```
|
||||
- [ ] Create the release tarball and push to `mfem/releases`.
|
||||
- [ ] Recreate the `next` branch as described in previous section.
|
||||
- [ ] Update and push documentation to `mfem/doxygen`. Update the `README.md` file and the `html` link in the `mfem/doxygen` repo.
|
||||
- [ ] Update and push documentation to `mfem/doxygen`.
|
||||
- [ ] Update URL shortlinks:
|
||||
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. http://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
|
||||
- [ ] Update website in `mfem/web` repo:
|
||||
@@ -663,7 +535,6 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
|
||||
## LLNL Workflow
|
||||
|
||||
|
||||
### Mirroring on Bitbucket
|
||||
|
||||
- The GitHub `master` and `next` branches are mirrored to the LLNL institutional
|
||||
@@ -683,42 +554,33 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- `mfem:gh-next` -- Bleeding-edge development version, may be broken, use at
|
||||
your own risk.
|
||||
|
||||
|
||||
### Mirroring on GitLab
|
||||
|
||||
- MFEM repository is also mirrored on the LLNL GitLab instance, in a
|
||||
semi-automated manner.
|
||||
|
||||
- This instance is meant to complete CI testing with tests on Livermore
|
||||
Computing systems. GitLab pipeline status is reported in the corresponding
|
||||
Computing systems. Gitlab pipeline status is reported in the corresponding
|
||||
GitHub pull request.
|
||||
|
||||
- In GitLab pipelines, TPLs (dependencies) are built using Spack, driven by Uberenv.
|
||||
|
||||
- No change to the MFEM repo can be made on this instance.
|
||||
- No change can be made on this instance.
|
||||
|
||||
## Automated Testing
|
||||
|
||||
MFEM has several levels of automated testing running on GitHub, as well as on
|
||||
local Mac and Linux workstations, and Livermore Computing clusters at LLNL.
|
||||
|
||||
In addition, developers can set local git hooks to run some quick checks on
|
||||
commit or push, see the [README](config/githooks/README.md) in the `config/githooks`
|
||||
directory.
|
||||
|
||||
|
||||
### Linux and Mac smoke tests
|
||||
We use GitHub Actions to drive the default tests on the `master` and `next`
|
||||
branches. See the `.github/workflows` files and the logs at
|
||||
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
|
||||
We use Travis CI to drive the default tests on the `master` and `next`
|
||||
branches. See the `.travis` file and the logs at
|
||||
[https://travis-ci.org/mfem/mfem](https://travis-ci.org/mfem/mfem).
|
||||
|
||||
Testing using GitHub Actions should be kept lightweight, as there is a time
|
||||
Testing using Travis CI should be kept lightweight, as there is a 50 minute time
|
||||
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
|
||||
|
||||
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
|
||||
- Tests on the `next` branch are currently scheduled to run each night.
|
||||
|
||||
|
||||
### Windows smoke test
|
||||
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor` file and the
|
||||
@@ -728,7 +590,6 @@ build logs at
|
||||
CMake is used to generate the MSVC Project files and drive the build. A release
|
||||
and debug build is performed with a simple run of `ex1` to verify the executable.
|
||||
|
||||
|
||||
### Tests at LLNL
|
||||
|
||||
- We mirror the `master` and `next` branches internally (to `gh-master` and
|
||||
|
||||
@@ -5,11 +5,7 @@
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
|
||||
This file provides a detailed description of how to build and install the MFEM
|
||||
library. For a simple build, see the step-by-step instructions on the website
|
||||
at https://mfem.org/building.
|
||||
http://mfem.org
|
||||
|
||||
The MFEM library has a serial and an MPI-based parallel version, which largely
|
||||
share the same code base. The only prerequisite for building the serial version
|
||||
@@ -20,17 +16,13 @@ requires an MPI C++ compiler, as well as the following external libraries:
|
||||
https://github.com/hypre-space/hypre
|
||||
|
||||
- METIS (a family of multilevel partitioning algorithms)
|
||||
https://github.com/mfem/tpls
|
||||
|
||||
Note: We recommend our mirror of metis-4.0.3/5.1.0 above because the METIS
|
||||
webpage, http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, is often down
|
||||
and we don't support yet the new repo https://github.com/KarypisLab/METIS.
|
||||
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
|
||||
The hypre dependency can be downloaded as a tarball from GitHub or from the
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.24.0 release
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.16.0 release
|
||||
of hypre is available at
|
||||
|
||||
https://github.com/hypre-space/hypre/archive/v2.24.0.tar.gz
|
||||
https://github.com/hypre-space/hypre/archive/v2.16.0.tar.gz
|
||||
|
||||
The METIS dependency can be disabled but that is not generally recommended, see
|
||||
the option MFEM_USE_METIS.
|
||||
@@ -45,7 +37,7 @@ as CUDA, HIP, OCCA, OpenMP and RAJA.
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- HIP support requires an AMD GPU and an installation of the ROCm software stack
|
||||
https://rocmdocs.amd.com
|
||||
https://rocm.github.io/ROCmInstall.html#installing-from-amd-rocm-repositories
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
@@ -66,12 +58,11 @@ following package managers:
|
||||
|
||||
- Spack, https://github.com/spack/spack
|
||||
- OpenHPC, http://openhpc.community
|
||||
- Conda-forge, https://conda-forge.org (pre-built binaries linked with
|
||||
OpenMPI/MPICH, hypre, and METIS)
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
|
||||
|
||||
We also recommend downloading and building the MFEM-based GLVis visualization
|
||||
tool which can be used to visualize the meshes and solution in MFEM's examples
|
||||
and miniapps. See https://glvis.org and https://mfem.org/building.
|
||||
and miniapps. See http://glvis.org and http://mfem.org/building.
|
||||
|
||||
Quick start with GNU make
|
||||
=========================
|
||||
@@ -86,7 +77,7 @@ Parallel build:
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_70')
|
||||
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_30')
|
||||
|
||||
HIP build:
|
||||
make hip -j 4
|
||||
@@ -337,6 +328,10 @@ MFEM_USE_SUNDIALS = YES/NO
|
||||
library. When enabled, this option uses the SUNDIALS_* library options,
|
||||
see below.
|
||||
|
||||
MFEM_USE_MESQUITE = YES/NO
|
||||
Enable MFEM functionality based on the Mesquite library. When enabled, this
|
||||
option uses the MESQUITE_* library options, see below.
|
||||
|
||||
MFEM_USE_SUITESPARSE = YES/NO
|
||||
Enable MFEM functionality based on the SuiteSparse library. Currently, this
|
||||
option adds the classes UMFPackSolver and KLUSolver (both sparse serial
|
||||
@@ -353,11 +348,6 @@ MFEM_USE_SUPERLU5 = YES/NO
|
||||
If SuperLU functionality is enabled, use the older 5.1.0 version rather than
|
||||
the more recent 6+ versions.
|
||||
|
||||
MFEM_USE_MUMPS = YES/NO
|
||||
Enable MFEM functionality based on the MUMPS library. Currently, this
|
||||
option adds the class MUMPSSolver (a parallel sparse direct solver).
|
||||
When enabled, this option uses the MUMPS_* library options, see below.
|
||||
|
||||
MFEM_USE_STRUMPACK = YES/NO
|
||||
Enable MFEM functionality based on the STRUMPACK sparse direct solver and
|
||||
preconditioner through the STRUMPACKSolver and STRUMPACKRowLocMatrix
|
||||
@@ -463,29 +453,9 @@ MFEM_USE_UMPIRE = YES/NO
|
||||
discovery, provision, and management of memory on machines with multiple
|
||||
memory devices like NUMA and GPUs.
|
||||
|
||||
MFEM_USE_BENCHMARK = YES/NO
|
||||
Enables support for Google Benchmark, a library to support the benchmarking
|
||||
of functions, in the tests/benchmarks directory.
|
||||
|
||||
MFEM_USE_HIOP = YES/NO
|
||||
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
|
||||
HPC solver for nonlinear optimization problems.
|
||||
|
||||
MFEM_USE_CODIPACK = YES/NO
|
||||
Enable automatic differentiation using the CoDiPack library.
|
||||
www.scicomp.uni-kl.de/codi/
|
||||
|
||||
MFEM_USE_ALGOIM = YES/NO
|
||||
Enable the usage of Algoim - a collection of high-order accurate numerical
|
||||
methods and C++ algorithms for working with implicitly-defined geometry and
|
||||
level set methods. The Algoim library requires the Blitz++ library. The MFEM
|
||||
provides interface to Algoim v1. Thus, to check out the specific state use:
|
||||
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a
|
||||
https://algoim.github.io
|
||||
|
||||
MFEM_USE_ADFORWARD = YES/NO
|
||||
Enable forward mode for AD packages. This option is valid
|
||||
only if the AD package supports two modes (backward/forward).
|
||||
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
|
||||
HPC solver for nonlinear optimization problems.
|
||||
|
||||
MFEM_USE_CUDA = YES/NO
|
||||
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
|
||||
@@ -498,7 +468,7 @@ MFEM_USE_HIP = YES/NO
|
||||
Enables support for AMD devices in MFEM. HIP is a heterogeneous-compute
|
||||
interface for portability developed by AMD that can target both AMD and
|
||||
NVIDIA GPUs. The variable HIP_ARCH is used to specify the AMD GPU processor
|
||||
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
|
||||
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
|
||||
option uses the HIP_* build options, see below.
|
||||
|
||||
MFEM_USE_RAJA = YES/NO
|
||||
@@ -532,44 +502,6 @@ MFEM_USE_MKL_CPARDISO = YES/NO
|
||||
MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
|
||||
OpenMP capabilities are disabled at link time.
|
||||
|
||||
MFEM_USE_MOONOLITH = YES/NO
|
||||
Enables the ParMoonolith interface for parallel non-conforming, non-matching,
|
||||
variational, volumetric mesh information transfer. It requires the variable
|
||||
MOONOLITH_DIR=<path to installation> to be defined in the environment in
|
||||
order to be used with the Makefile. Makefile users are also required to
|
||||
install moonolith using the command `make install_all`, see
|
||||
https://bitbucket.org/zulianp/par_moonolith for details.
|
||||
Although Moonolith is an MPI-based library, both serial (MFEM_USE_MPI=NO) and
|
||||
parallel (MFEM_USE_MPI=YES) versions of MFEM are supported.
|
||||
|
||||
MFEM_USE_CALIPER = YES/NO
|
||||
Enables the interface to Caliper. Caliper is a library to integrate
|
||||
performance profiling capabilities into applications. To use Caliper,
|
||||
developers mark code regions of interest using either Caliper's annotation
|
||||
API or their equivalent in MFEM. Applications can then enable performance
|
||||
profiling at runtime with Caliper's configuration API. Alternatively, one
|
||||
can configure Caliper through environment variables or config files.
|
||||
|
||||
MFEM_USE_FMS = YES/NO
|
||||
Enables support for the FMS library which consists of the DataCollection
|
||||
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
|
||||
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
|
||||
conversion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
DataCollection class, see the header file fem/fmsconvert.hpp.
|
||||
|
||||
MFEM_USE_PARELAG = YES/NO
|
||||
Enables the miniapps that use the ParELAG library. MFEM does not currently
|
||||
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_USE_ENZYME = YES/NO
|
||||
Enables automatic differentiation support through the LLVM plugin Enzyme.
|
||||
This requires the compiler to be set to clang (>=14.0.0). We also advise to
|
||||
use the link time optimization (LTO) plugin, to enable functions that you
|
||||
define over multiple files (compilation units) and want to be differentiated
|
||||
automatically, to work. This requires to also use LLVM/LLD for linking.
|
||||
Recommended options are in config/defaults.mk.
|
||||
|
||||
MFEM_BUILD_TAG = (any value)
|
||||
An optional tag to characterize the build. Exported to config/config.mk.
|
||||
Can be used to identify the MFEM build from other makefiles.
|
||||
@@ -591,17 +523,13 @@ directory and use the string @MFEM_DIR@, e.g. HYPRE_OPT = -I@MFEM_DIR@/../hypre.
|
||||
The specific libraries and their options are:
|
||||
|
||||
- HYPRE, required for the parallel build, i.e. when MFEM_USE_MPI = YES.
|
||||
See also the "Specific options for hypre" section at the end of this file.
|
||||
URL: https://github.com/hypre-space/hypre and https://www.llnl.gov/casc/hypre
|
||||
Options: HYPRE_OPT, HYPRE_LIB.
|
||||
Versions: HYPRE >= 2.10.0b (HYPRE built without CUDA)
|
||||
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
|
||||
HYPRE >= 2.22.1 (HYPRE built with CUDA)
|
||||
HYPRE >= 2.23.0 (HYPRE built with HIP)
|
||||
Versions: HYPRE >= 2.10.0b.
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
|
||||
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
|
||||
@@ -628,13 +556,13 @@ The specific libraries and their options are:
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
|
||||
for HIP.
|
||||
URL: http://computing.llnl.gov/projects/sundials/sundials-software
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0,
|
||||
SUNDIALS >= 5.4.0 for CUDA support, and
|
||||
SUNDIALS >= 5.7.0 for HIP support.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA suppport.
|
||||
|
||||
- Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
|
||||
URL: http://trilinos.org/oldsite/packages/mesquite
|
||||
Options: MESQUITE_OPT, MESQUITE_LIB.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
@@ -644,17 +572,11 @@ The specific libraries and their options are:
|
||||
- SuperLU_DIST (optional), used when MFEM_USE_SUPERLU = YES. Note that
|
||||
SuperLU_DIST requires ParMETIS, which includes METIS 5 in its distribution.
|
||||
Both ParMETIS and the included METIS 5 should be built and installed in the
|
||||
same location. If using SuperLU_Dist v5, set MFEM_USE_SUPERLU5=YES.
|
||||
same location.
|
||||
URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU
|
||||
Options: SUPERLU_OPT, SUPERLU_LIB.
|
||||
Versions: SuperLU_DIST >= 5.1.0.
|
||||
|
||||
- MUMPS (optional), used when MFEM_USE_MUMPS = YES. Note that MUMPS
|
||||
requires LAPACK, SCALAPACK and a reordering package such as PORD or METIS.
|
||||
URL: http://mumps.enseeiht.fr
|
||||
Options: MUMPS_OPT, MUMPS_LIB.
|
||||
Versions: MUMPS >= 5.1.1
|
||||
|
||||
- STRUMPACK (optional), used when MFEM_USE_STRUMPACK = YES. Note that STRUMPACK
|
||||
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
|
||||
includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
|
||||
@@ -663,15 +585,13 @@ The specific libraries and their options are:
|
||||
2.0.0 or later.
|
||||
URL: http://portal.nersc.gov/project/sparse/strumpack
|
||||
Options: STRUMPACK_OPT, STRUMPACK_LIB.
|
||||
Versions: STRUMPACK >= 3.0.0.
|
||||
Versions: STRUMPACK >= 3.0.0, requires HYPRE < 2.16.0.
|
||||
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
|
||||
C++ compiler that supports the C++-14 standard. For additional requirements
|
||||
and dependencies of specific modules, see the Ginkgo webpage below.
|
||||
C++ compiler that supports the C++-11 standard. For additional requirements
|
||||
and dependencies of specific modules see the Ginkgo webpage below.
|
||||
URL: https://ginkgo-project.github.io
|
||||
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
|
||||
Debug).
|
||||
Versions: Ginkgo >= 1.4.0.
|
||||
Options: GINKGO_OPT (Not used), GINKGO_LIB.
|
||||
|
||||
- AmgX (optional), used when MFEM_USE_AMGX = YES.
|
||||
URL: https://github.com/NVIDIA/AMGX
|
||||
@@ -699,15 +619,11 @@ The specific libraries and their options are:
|
||||
PETSc has been cloned on the same level as mfem and hypre:
|
||||
./configure --download-fblaslapack=yes --download-scalapack=yes \
|
||||
--download-mumps=yes --download-suitesparse=yes \
|
||||
--with-hypre-dir=../hypre/src/hypre \
|
||||
--with-hypre-dir=../hypre-2.10.0b/src/hypre \
|
||||
--with-shared-libraries=0
|
||||
When building PETSc with HIP, one may need to add a flag like -std=c2x to
|
||||
CFLAGS to allow proper parsing of the hipsparse header under C.
|
||||
URL: https://www.mcs.anl.gov/petsc
|
||||
Options: PETSC_OPT, PETSC_LIB.
|
||||
Versions: PETSc >= 3.8.0 (PETSc build without CUDA/HIP)
|
||||
PETSc >= 3.15.0 (PETSc built with CUDA)
|
||||
PETSc >= 3.19.0 (PETSc built with HIP, older versions may work too)
|
||||
Versions: PETSc >= 3.8.0.
|
||||
|
||||
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
|
||||
uses some of the PETSc options when compiled.
|
||||
@@ -732,47 +648,26 @@ The specific libraries and their options are:
|
||||
|
||||
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
|
||||
URL: https://adios2.readthedocs.io/
|
||||
Versions: ADIOS >= 2.5.0.
|
||||
|
||||
- PUMI (optional), used when MFEM_USE_PUMI = YES.
|
||||
URL: https://scorec.rpi.edu/pumi
|
||||
https://github.com/SCOREC/core
|
||||
Options: PUMI_OPT, PUMI_LIB.
|
||||
Versions: PUMI >= 2.2.6.
|
||||
Versions: PUMI >= 2.2.3.
|
||||
|
||||
- HiOp (optional), used when MFEM_USE_HIOP = YES.
|
||||
URL: https://github.com/LLNL/hiop
|
||||
Options: HIOP_OPT, HIOP_LIB.
|
||||
Versions: HIOP >= 0.4.6.
|
||||
|
||||
- CoDiPack (optional), used with MFEM_USE_CODIPACK = YES
|
||||
URL: https://www.scicomp.uni-kl.de/codi/
|
||||
Options: CODIPACK_OPT
|
||||
Versions: 1.9.3
|
||||
|
||||
- GSLIB (optional), used when MFEM_USE_GSLIB = YES. The gslib library must be
|
||||
built prior to the MFEM build, as follows: download gslib-1.0.7, untar it at
|
||||
the same level as MFEM and create a symbolic link: "ln -s gslib-1.0.7 gslib".
|
||||
built prior to the MFEM build, as follows: download gslib-1.0.5, untar it at
|
||||
the same level as MFEM and create a symbolic link: "ln -s gslib-1.0.5 gslib".
|
||||
Build gslib in parallel or in serial based on the desired MFEM build: "make
|
||||
clean; make CC=mpicc" or "make clean; make CC=gcc MPI=0". Build MFEM with
|
||||
MFEM_USE_GSLIB=YES.
|
||||
URL: https://github.com/gslib/gslib/archive/v1.0.7.tar.gz
|
||||
URL: https://github.com/gslib/gslib/archive/v1.0.5.tar.gz
|
||||
Options: GSLIB_OPT, GSLIB_LIB.
|
||||
Versions: GSLIB >= 1.0.7.
|
||||
|
||||
- ALGOIM (optional), used when MFEM_USE_ALGOIM=YES. The library provides only
|
||||
headers so it just needs to be downloaded at the same level as MFEM. Download
|
||||
the specific version we use as:
|
||||
"git clone https://github.com/algoim/algoim.git;
|
||||
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a"
|
||||
ALGOIM depends on BLITZ and the library must be built prior to the MFEM build.
|
||||
Download v1.0.2, untar it at the same level as MFEM and create a symbolic link:
|
||||
"ln -s blitz-1.0.2 blitz".
|
||||
Build Blitz using CMake as:
|
||||
"cmake . -DCMAKE_INSTALL_PREFIX=.; make lib; make install"
|
||||
URL: https://github.com/blitzpp/blitz/archive/refs/tags/1.0.2.tar.gz
|
||||
Options: BLITZ_OPT, BLITZ_LIB
|
||||
Versions: BLITZ = 1.0.2
|
||||
Versions: GSLIB >= 1.0.5.
|
||||
|
||||
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
|
||||
URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
|
||||
@@ -782,10 +677,10 @@ The specific libraries and their options are:
|
||||
- CUDA (optional), used when MFEM_USE_CUDA = YES.
|
||||
URL: https://developer.nvidia.com/cuda-toolkit
|
||||
Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
|
||||
Versions: CUDA >= 10.1.168.
|
||||
Versions: CUDA >= 9.1, older versions may work too.
|
||||
|
||||
- HIP (optional), used when MFEM_USE_HIP = YES.
|
||||
URL: https://rocmdocs.amd.com
|
||||
URL: https://rocm.github.io/ROCmInstall.html
|
||||
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
|
||||
|
||||
- OCCA (optional), used when MFEM_USE_OCCA = YES.
|
||||
@@ -797,34 +692,18 @@ The specific libraries and their options are:
|
||||
URL: https://github.com/CEED/libCEED
|
||||
https://ceed.exascaleproject.org/libceed
|
||||
Options: CEED_DIR, CEED_OPT, CEED_LIB.
|
||||
Versions: libCEED >= 0.10.
|
||||
Versions: libCEED >= 0.7.
|
||||
|
||||
- RAJA (optional), used when MFEM_USE_RAJA = YES.
|
||||
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
|
||||
Beginning with MFEM v4.1, only RAJA v0.10.0+ is supported.
|
||||
URL: https://github.com/LLNL/RAJA
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 2022.10.3.
|
||||
|
||||
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
|
||||
URL: https://bitbucket.org/zulianp/par_moonolith
|
||||
Options: MOONOLITH_DIR
|
||||
Versions: MOONOLITH >= 1.1.0.
|
||||
|
||||
- Caliper (optional), used when MFEM_USE_CALIPER = YES.
|
||||
URL: https://github.com/LLNL/Caliper
|
||||
Options: CALIPER_DIR
|
||||
Versions: CALIPER >= 2.5.0, older versions may work too.
|
||||
Versions: RAJA >= 0.10.0.
|
||||
|
||||
- Umpire, used when MFEM_USE_UMPIRE = YES.
|
||||
Umpire requires camp when the Umpire version is >= 3.0.0.
|
||||
URL: https://github.com/LLNL/Umpire
|
||||
Options: UMPIRE_DIR, UMPIRE_OPT, UMPIRE_LIB.
|
||||
Versions: Umpire >= 3.0.0.
|
||||
|
||||
- Benchmark, used when MFEM_USE_BENCHMARK = YES.
|
||||
URL: https://github.com/google/benchmark
|
||||
Options: BENCHMARK_DIR, BENCHMARK_LIB.
|
||||
Versions: Benchmark >= 1.5.6.
|
||||
Versions: Umpire >= 2.0.0.
|
||||
|
||||
- MPFR (optional), used when MFEM_USE_MPFR = YES.
|
||||
URL: http://mpfr.org, it depends on the GMP library: https://gmplib.org
|
||||
@@ -841,21 +720,6 @@ The specific libraries and their options are:
|
||||
URL: https://zlib.net
|
||||
Options: ZLIB_OPT, ZLIB_LIB.
|
||||
|
||||
- FMS (optional), used when MFEM_USE_FMS = YES.
|
||||
URL: https://github.com/CEED/FMS
|
||||
Options: FMS_OPT, FMS_LIB.
|
||||
Versions: FMS >= 0.2.
|
||||
|
||||
- ParELAG, used when MFEM_USE_PARELAG = YES.
|
||||
URL: https://github.com/LLNL/parelag
|
||||
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
|
||||
|
||||
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
|
||||
URL: https://github.com/EnzymeAD/Enzyme
|
||||
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
|
||||
Versions: Enzyme >= v0.0.33.
|
||||
|
||||
|
||||
Building with CMake
|
||||
===================
|
||||
The MFEM build system consists of two steps: configuration and compilation.
|
||||
@@ -967,9 +831,9 @@ MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC
|
||||
MFEM_TIMER_TYPE - Set automatically, can be overwritten.
|
||||
MFEM_USE_MESQUITE
|
||||
MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU
|
||||
MFEM_USE_MUMPS
|
||||
MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO
|
||||
MFEM_USE_AMGX
|
||||
@@ -979,21 +843,12 @@ MFEM_USE_MPFR
|
||||
MFEM_USE_ZLIB
|
||||
MFEM_USE_PUMI
|
||||
MFEM_USE_HIOP
|
||||
MFEM_USE_CODIPACK
|
||||
MFEM_USE_ADFORWARD
|
||||
MFEM_USE_CUDA
|
||||
MFEM_USE_HIP
|
||||
MFEM_USE_OCCA
|
||||
MFEM_USE_CEED
|
||||
MFEM_USE_RAJA
|
||||
MFEM_USE_UMPIRE
|
||||
MFEM_USE_SIDRE
|
||||
MFEM_USE_MOONOLITH
|
||||
MFEM_USE_CALIPER
|
||||
MFEM_USE_FMS
|
||||
MFEM_USE_BENCHMARK
|
||||
MFEM_USE_PARELAG
|
||||
MFEM_USE_ENZYME
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -1031,6 +886,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
- HYPRE
|
||||
- METIS - The option MFEM_USE_METIS_5 is auto-detected.
|
||||
- ParMETIS
|
||||
- MESQUITE
|
||||
- SuiteSparse
|
||||
- SuperLUDist, STRUMPACK
|
||||
- Ginkgo
|
||||
@@ -1042,17 +898,10 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
- POSIXCLOCKS
|
||||
- PUMI
|
||||
- HIOP
|
||||
- CoDiPack
|
||||
- OCCA
|
||||
- RAJA
|
||||
- UMPIRE
|
||||
- AXOM - Used when MFEM_USE_SIDRE is enabled
|
||||
- MOONOLITH
|
||||
- CALIPER
|
||||
- FMS
|
||||
- BENCHMARK
|
||||
- ParELAG
|
||||
- Enzyme
|
||||
|
||||
The following built-in CMake packages are also used:
|
||||
|
||||
@@ -1070,7 +919,7 @@ config/config.hpp.in:
|
||||
|
||||
cp config/config.hpp.in config/_config.hpp
|
||||
|
||||
The file config/_config.hpp can then be edited to enable desired options. The
|
||||
The file config/_config.hpp can then be edited to enable desired options. The
|
||||
MFEM library is simply a combination of all object files obtained by compiling
|
||||
the .cpp source files in the source directories: general, linalg, mesh, and fem.
|
||||
|
||||
@@ -1078,7 +927,7 @@ the .cpp source files in the source directories: general, linalg, mesh, and fem.
|
||||
Specifying an MPI job launcher
|
||||
==============================
|
||||
By default, MFEM will use 'mpirun -np #' to launch any of its parallel tests or
|
||||
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
|
||||
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
|
||||
provided by setting the MFEM_MPIEXEC and MFEM_MPIEXEC_NP config variables.
|
||||
|
||||
MFEM will expect the launcher command, plus the command line option to allow it
|
||||
@@ -1088,19 +937,3 @@ MFEM_MPIEXEC = mpirun # default
|
||||
MFEM_MPIEXEC_NP = -np # default
|
||||
MFEM_MPIEXEC = srun # example for platforms using SLURM
|
||||
MFEM_MPIEXEC_NP = -n # example for platforms using SLURM
|
||||
|
||||
|
||||
Specific options for hypre
|
||||
==========================
|
||||
The hypre library has multiple options to define local and global index storage
|
||||
sizes. By default, all indices are stored as an architecture aware integer. For
|
||||
most platforms, this will be 32-bit. This limits the maximum number of global
|
||||
degrees of freedom in a vector or matrix to about 2 billion. In order to solve
|
||||
larger problems, there are two options:
|
||||
|
||||
1. Building hypre with '--enable-bigint' defines the local and global indices to
|
||||
be 64-bit. This is convenient, but requires more memory than necessary.
|
||||
|
||||
2. Building hypre with '--enable-mixedint' defines the local indiced to be
|
||||
32-bit, while using a 64-bit storage for global indices. This option is
|
||||
currently tested only in ex1p, and may not work in more general settings.
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
BSD 3-Clause License
|
||||
|
||||
Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
|
||||
Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC
|
||||
All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
|
||||
@@ -29,5 +29,4 @@ license files. These software products and their licenses are as follows:
|
||||
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
|
||||
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
|
||||
* Picojson (fem/picojson.h) -- Custom 2-clause license
|
||||
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
|
||||
* Zstr (general/zstr.hpp) -- MIT license
|
||||
|
||||
+24
-31
@@ -5,25 +5,22 @@
|
||||
| | | | | || _|| __/| | | | | |
|
||||
|_| |_| |_||_| \___||_| |_| |_|
|
||||
|
||||
https://mfem.org
|
||||
http://mfem.org
|
||||
|
||||
[MFEM](https://mfem.org) is a modular parallel C++ library for finite element
|
||||
methods. Its goal is to enable high-performance scalable finite element
|
||||
discretization research and application development on a wide variety of
|
||||
platforms, ranging from laptops to supercomputers.
|
||||
MFEM is a modular parallel C++ library for finite element methods. Its goal is
|
||||
to enable high-performance scalable finite element discretization research and
|
||||
application development on a wide variety of platforms, ranging from laptops to
|
||||
supercomputers.
|
||||
|
||||
We welcome contributions and feedback from the community. Please see the file
|
||||
[CONTRIBUTING.md](CONTRIBUTING.md) for additional details about our development
|
||||
process.
|
||||
* For building instructions, see the file INSTALL, or type "make help".
|
||||
|
||||
* For building instructions, see the file [INSTALL](INSTALL), or type "make help".
|
||||
* Copyright and licensing information can be found in files LICENSE and NOTICE.
|
||||
|
||||
* Copyright and licensing information can be found in files [LICENSE](LICENSE) and [NOTICE](NOTICE).
|
||||
* The best starting point for new users interested in MFEM's features is the
|
||||
interactive documentation in examples/README.html.
|
||||
|
||||
* The best starting point for new users interested in MFEM's features is to
|
||||
review the examples and miniapps at https://mfem.org/examples.
|
||||
|
||||
* Instructions for learning with Docker are in [config/docker](config/docker).
|
||||
* Developers interested in contributing to the library, should read the
|
||||
instructions and documentation in the CONTRIBUTING.md file.
|
||||
|
||||
Conceptually, MFEM can be viewed as a finite element toolbox that provides the
|
||||
building blocks for developing finite element algorithms in a manner similar to
|
||||
@@ -52,25 +49,21 @@ library. Nonlinear solvers (the Newton method), eigensolvers (LOBPCG), and
|
||||
several explicit and implicit Runge-Kutta time integrators are also available.
|
||||
|
||||
MFEM supports MPI-based parallelism throughout the library, and can readily be
|
||||
used as a scalable unstructured finite element problem generator. Starting with
|
||||
version 4.0, MFEM offers support for GPU acceleration, and programming models,
|
||||
such as CUDA, HIP, OCCA, RAJA and OpenMP. MFEM-based applications require
|
||||
minimal changes to switch from a serial to a highly-performant MPI-parallel
|
||||
version of the code, where they can take advantage of the integrated linear
|
||||
solvers from the hypre library. Comprehensive support for other external
|
||||
packages, e.g. PETSc, SUNDIALS and libCEED is also included, giving access to
|
||||
additional linear and nonlinear solvers, preconditioners, time integrators, etc.
|
||||
used as a scalable unstructured finite element problem generator. As of version
|
||||
4.0, MFEM offers initial support for GPU acceleration, and programming models,
|
||||
such as CUDA, OCCA, RAJA and OpenMP. MFEM-based applications require minimal
|
||||
changes to switch from a serial to a high-performing MPI-parallel version of the
|
||||
code, where they can take advantage of the integrated linear solvers from the
|
||||
hypre library. Comprehensive support for other external packages, e.g. PETSc
|
||||
and SUNDIALS is also included, giving access to many additional linear and
|
||||
nonlinear solvers, preconditioners, time integrators, etc.
|
||||
|
||||
For examples of using MFEM, see the [examples/](examples) and [miniapps/](miniapps)
|
||||
directories, as well as the OpenGL visualization tool GLVis which is available
|
||||
at https://glvis.org.
|
||||
|
||||
## License
|
||||
For examples of using MFEM, see the examples/ and miniapps/ directories, as well
|
||||
as the OpenGL visualization tool GLVis which is available at http://glvis.org.
|
||||
|
||||
MFEM is distributed under the terms of the BSD-3 license. All new contributions
|
||||
must be made under this license. See [LICENSE](LICENSE) and [NOTICE](NOTICE) for
|
||||
details.
|
||||
must be made under this license. See LICENSE and NOTICE for details.
|
||||
|
||||
SPDX-License-Identifier: BSD-3-Clause <br>
|
||||
LLNL Release Number: LLNL-CODE-806117 <br>
|
||||
SPDX-License-Identifier: BSD-3-Clause
|
||||
LLNL Release Number: LLNL-CODE-806117
|
||||
DOI: 10.11578/dc.20171025.1248
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -212,6 +212,10 @@ IF (DEFINED TPL_ENABLE_SUNDIALS)
|
||||
SET(MFEM_USE_SUNDIALS ${TPL_ENABLE_SUNDIALS} CACHE BOOL "Enable SUNDIALS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MESQUITE)
|
||||
SET(MFEM_USE_MESQUITE ${TPL_ENABLE_MESQUITE} CACHE BOOL "Enable MESQUITE usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SUITESPARSE)
|
||||
SET(MFEM_USE_SUITESPARSE ${TPL_ENABLE_SUITESPARSE} CACHE BOOL "Enable SuiteSparse usage" FORCE)
|
||||
ENDIF()
|
||||
@@ -252,10 +256,6 @@ IF (DEFINED TPL_ENABLE_SIDRE)
|
||||
SET(MFEM_USE_SIDRE ${TPL_ENABLE_SIDRE} CACHE BOOL "Enable Axom/Sidre usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_FMS)
|
||||
SET(MFEM_USE_FMS ${TPL_ENABLE_FMS} CACHE BOOL "Enable FMS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_CONDUIT)
|
||||
SET(MFEM_USE_CONDUIT ${TPL_ENABLE_CONDUIT} CACHE BOOL "Enable Conduit usage" FORCE)
|
||||
ENDIF()
|
||||
@@ -279,11 +279,3 @@ ENDIF()
|
||||
IF (DEFINED TPL_ENABLE_UMPIRE)
|
||||
SET(MFEM_USE_UMPIRE ${TPL_ENABLE_UMPIRE} CACHE BOOL "Enable Umpire" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_BENCHMARK)
|
||||
SET(MFEM_USE_BENCHMARK ${TPL_ENABLE_BENCHMARK} CACHE BOOL "Enable Google-Benchmark" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_PARELAG)
|
||||
SET(MFEM_USE_PARELAG ${TPL_ENABLE_PARELAG} CACHE BOOL "Enable ParELAG" FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -29,13 +29,12 @@ set(MFEM_USE_LEGACY_OPENMP @MFEM_USE_LEGACY_OPENMP@)
|
||||
set(MFEM_USE_MEMALLOC @MFEM_USE_MEMALLOC@)
|
||||
set(MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@)
|
||||
set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
|
||||
set(MFEM_USE_MESQUITE @MFEM_USE_MESQUITE@)
|
||||
set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
|
||||
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
|
||||
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
|
||||
set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
|
||||
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
|
||||
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
|
||||
set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
|
||||
set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
|
||||
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
|
||||
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
|
||||
@@ -43,7 +42,6 @@ set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
|
||||
set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
|
||||
set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
|
||||
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
|
||||
set(MFEM_USE_FMS @MFEM_USE_FMS@)
|
||||
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
|
||||
set(MFEM_USE_PUMI @MFEM_USE_PUMI@)
|
||||
set(MFEM_USE_CUDA @MFEM_USE_CUDA@)
|
||||
@@ -53,16 +51,6 @@ set(MFEM_USE_CEED @MFEM_USE_CEED@)
|
||||
set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
|
||||
set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
|
||||
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
|
||||
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
|
||||
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
|
||||
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
|
||||
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
|
||||
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
|
||||
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
|
||||
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
|
||||
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
|
||||
|
||||
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
|
||||
set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
|
||||
|
||||
+45
-84
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -39,9 +39,6 @@
|
||||
// Description of the git commit used to build MFEM.
|
||||
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
#cmakedefine MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
#cmakedefine MFEM_USE_MPI
|
||||
@@ -80,102 +77,81 @@
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
// Enable MFEM functionality based on the Mesquite library.
|
||||
#cmakedefine MFEM_USE_MESQUITE
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
#cmakedefine MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
#cmakedefine MFEM_USE_SUPERLU
|
||||
#cmakedefine MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
#cmakedefine MFEM_USE_MUMPS
|
||||
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
// Enable functionality based on the Ginkgo library
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// Enable MFEM functionality based on the AmgX library
|
||||
#cmakedefine MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable MFEM functionality based on the GnuTLS library
|
||||
#cmakedefine MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
#cmakedefine MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
#cmakedefine MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Enable MFEM functionality based on the NetCDF library
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the HiOp library
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
#cmakedefine MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable functionality based on the libCEED library.
|
||||
// Enable MFEM functionality based on the libCEED library
|
||||
#cmakedefine MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Algoim library.
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// Enable MFEM functionality based on the Umpire library
|
||||
#cmakedefine MFEM_USE_UMPIRE
|
||||
|
||||
// Enable IO functionality based on the ADIOS2 library.
|
||||
// Enable MFEM functionality based on the ADIOS2 library
|
||||
#cmakedefine MFEM_USE_ADIOS2
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
@@ -186,19 +162,4 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
#cmakedefine MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
#cmakedefine MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable Enzyme for AD
|
||||
#cmakedefine MFEM_USE_ENZYME
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
@@ -38,19 +38,19 @@ if(NOT ADIOS2_FOUND)
|
||||
endif()
|
||||
|
||||
find_path(ADIOS2_INCLUDE_DIR adios2.h ${ADIOS2_INCLUDE_OPTS})
|
||||
|
||||
# adios2 version 2.5.0
|
||||
|
||||
# adios2 version 2.5.0
|
||||
find_library(ADIOS2_LIBRARY NAMES adios2 ${ADIOS2_LIBRARY_OPTS})
|
||||
|
||||
|
||||
# adios2 version 2.6.0 and onwards
|
||||
if(NOT ADIOS2_LIBRARY)
|
||||
find_library(ADIOS2_CXX11_MPI_LIBRARY NAMES adios2_cxx11_mpi ${ADIOS2_LIBRARY_OPTS})
|
||||
find_library(ADIOS2_CXX11_LIBRARY NAMES adios2_cxx11 ${ADIOS2_LIBRARY_OPTS})
|
||||
set(ADIOS2_LIBRARY ${ADIOS2_CXX11_MPI_LIBRARY} ${ADIOS2_CXX11_LIBRARY})
|
||||
if(MFEM_USE_MPI)
|
||||
add_definitions(-DADIOS2_USE_MPI)
|
||||
endif()
|
||||
endif()
|
||||
find_library(ADIOS2_CXX11_MPI_LIBRARY NAMES adios2_cxx11_mpi ${ADIOS2_LIBRARY_OPTS})
|
||||
find_library(ADIOS2_CXX11_LIBRARY NAMES adios2_cxx11 ${ADIOS2_LIBRARY_OPTS})
|
||||
set(ADIOS2_LIBRARY ${ADIOS2_CXX11_MPI_LIBRARY} ${ADIOS2_CXX11_LIBRARY})
|
||||
if(MFEM_USE_MPI)
|
||||
add_definitions(-DADIOS2_USE_MPI)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(ADIOS2
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -15,10 +15,6 @@
|
||||
# - AMGX_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
set(AMGX_REQUIRED_LIBRARIES cusparse cusolver cublas cublasLt nvToolsExt)
|
||||
set(AMGX_REQUIRED_LIBRARIES cusparse cusolver cublas nvToolsExt)
|
||||
mfem_find_package(AMGX AMGX AMGX_DIR "include" "amgx_c.h" "lib" "amgx"
|
||||
"Paths to headers required by AMGX." "Libraries required by AMGX.")
|
||||
# Make sure the library location is locked down
|
||||
foreach(lib ${AMGX_REQUIRED_LIBRARIES})
|
||||
list(APPEND AMGX_LIBRARIES ${CUDA_TOOLKIT_ROOT_DIR}/lib64/lib${lib}${CMAKE_SHARED_LIBRARY_SUFFIX})
|
||||
endforeach()
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - ALGOIM_FOUND
|
||||
# - ALGOIM_LIBRARIES
|
||||
# - ALGOIM_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Algoim ALGOIM ALGOIM_DIR
|
||||
"include;src" "algoim_quad.hpp"
|
||||
"" ""
|
||||
"Paths to headers required by Algoim."
|
||||
"Libraries required by Algoim.")
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - BENCHMARK_FOUND
|
||||
# - BENCHMARK_LIBRARIES
|
||||
# - BENCHMARK_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Benchmark BENCHMARK BENCHMARK_DIR
|
||||
"include" "benchmark/benchmark.h"
|
||||
"lib" "benchmark"
|
||||
"Paths to headers required by Google Benchmark."
|
||||
"Libraries required by Google Benchmark.")
|
||||
@@ -1,24 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Automatic differentiation using the CoDiPack library.
|
||||
# www.scicomp.uni-kl.de/codi/
|
||||
# Sets the following variables:
|
||||
# - CODIPACK_FOUND
|
||||
# - CODIPACK_INCLUDE_DIRS
|
||||
# - CODIPACK_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(CODIPACK CODIPACK CODIPACK_DIR
|
||||
"include" "codi.h"
|
||||
"lib" ""
|
||||
"Paths to headers required by CODIPACK."
|
||||
"Libraries required by CODIPACK.")
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,37 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - CALIPER_FOUND
|
||||
# - CALIPER_LIBRARIES
|
||||
# - CALIPER_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Caliper CALIPER CALIPER_DIR
|
||||
"include" "caliper/cali.h"
|
||||
"lib" "caliper"
|
||||
"Paths to headers required by Caliper."
|
||||
"Libraries required by Caliper.")
|
||||
|
||||
# Append adiak path/lib if the user provided ADIAK_DIR
|
||||
if(ADIAK_DIR AND EXISTS ${ADIAK_DIR})
|
||||
find_package(adiak NO_DEFAULT_PATH REQUIRED PATHS ${ADIAK_DIR}/lib/cmake/adiak ${ADIAK_DIR})
|
||||
list(APPEND CALIPER_INCLUDE_DIRS ${adiak_INCLUDE_DIRS})
|
||||
list(APPEND CALIPER_LIBRARIES ${adiak_LIBRARIES})
|
||||
endif()
|
||||
|
||||
# Append gotcha path/lib if the user provided GOTCHA_DIR
|
||||
if(GOTCHA_DIR AND EXISTS ${GOTCHA_DIR})
|
||||
find_package(gotcha NO_DEFAULT_PATH REQUIRED PATHS ${GOTCHA_DIR}/lib/cmake/gotcha ${GOTCHA_DIR})
|
||||
list(APPEND CALIPER_INCLUDE_DIRS ${gotcha_INCLUDE_DIRS})
|
||||
list(APPEND CALIPER_LIBRARIES ${gotcha_LIBRARIES})
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
|
||||
# we only need HDF5 if Conduit was built with HDF5 support
|
||||
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
|
||||
"Additional packages required by Conduit.")
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
|
||||
# MFEM's FindHDF5.cmake is not used.
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
|
||||
ADD_COMPONENT relay
|
||||
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
|
||||
@@ -1,27 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
message(STATUS "Looking for ENZYME ...")
|
||||
message(STATUS " in ENZYME_DIR = ${ENZYME_DIR}")
|
||||
|
||||
# Make sure the directory and version combination works. Do nothing otherwise.
|
||||
if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
|
||||
message(STATUS "Found ENZYME: ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
|
||||
|
||||
# Set ENZYME_FOUND
|
||||
set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
|
||||
|
||||
# Set CXX flags to accommodate the Enzyme Clang plugin
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
|
||||
set(MFEM_USE_ENZYME YES)
|
||||
else()
|
||||
|
||||
endif()
|
||||
@@ -1,20 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - FMS_FOUND
|
||||
# - FMS_LIBRARIES
|
||||
# - FMS_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(FMS FMS FMS_DIR
|
||||
"include" fms.h "lib" fms
|
||||
"Paths to headers required by FMS." "Libraries required by FMS.")
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -15,5 +15,5 @@
|
||||
# - GSLIB_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(GSLIB GSLIB GSLIB_DIR "include" gslib.h "lib" gs
|
||||
mfem_find_package(gslib GSLIB GSLIB_DIR "include" gslib.h "lib" gs
|
||||
"Paths to headers required by GSLIB." "Libraries required by GSLIB.")
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - HDF5_FOUND - If HDF5 was found
|
||||
# - HDF5_LIBRARIES - The HDF5 libraries
|
||||
# - HDF5_INCLUDE_DIRS - The HDF5 include directories
|
||||
|
||||
# NOTE: Using this FindHDF5.cmake instead of the CMake provided version may lead
|
||||
# to issues with some TPL libraries that depend (or may depend) on HDF5.
|
||||
# For this reason, we should consider removing this file, or at least
|
||||
# making it use the CMake provided version by default and apply the logic
|
||||
# below only when specifically requested by a user. -V. Dobrev
|
||||
|
||||
# First Check for HDF5_DIR
|
||||
if(NOT HDF5_DIR)
|
||||
message(FATAL_ERROR
|
||||
"Could not find HDF5. HDF5 support needs explicit HDF5_DIR")
|
||||
endif()
|
||||
|
||||
if (NOT HDF5_FIND_QUIETLY)
|
||||
message(STATUS "Looking for HDF5 ...")
|
||||
message(STATUS " in HDF5_DIR = ${HDF5_DIR}")
|
||||
endif()
|
||||
|
||||
# Find includes
|
||||
find_path( HDF5_INCLUDE_DIRS hdf5.h
|
||||
PATHS ${HDF5_DIR}/include/
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
find_library( __HDF5_LIBRARY NAMES hdf5 libhdf5 libhdf5_D libhdf5_debug
|
||||
PATHS ${HDF5_DIR}/lib
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
find_library( __HDF5_HL_LIBRARY NAMES hdf5_hl libhdf5_hl libhdf5_hl_D libhdf5_hl_debug
|
||||
PATHS ${HDF5_DIR}/lib
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
set(HDF5_LIBRARIES ${__HDF5_HL_LIBRARY} ${__HDF5_LIBRARY})
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
|
||||
# Handle the QUIETLY and REQUIRED arguments and set HDF5_FOUND to TRUE if all
|
||||
# listed variables are TRUE
|
||||
find_package_handle_standard_args(HDF5
|
||||
" *** HDF5 not found. Please set HDF5_DIR."
|
||||
HDF5_LIBRARIES
|
||||
HDF5_INCLUDE_DIRS
|
||||
__HDF5_LIBRARY
|
||||
__HDF5_HL_LIBRARY)
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,33 +14,10 @@
|
||||
# - HYPRE_LIBRARIES
|
||||
# - HYPRE_INCLUDE_DIRS
|
||||
# - HYPRE_VERSION
|
||||
# - HYPRE_USING_HIP (internal)
|
||||
|
||||
if (HYPRE_FOUND)
|
||||
if (HYPRE_USING_HIP)
|
||||
find_package(rocsparse REQUIRED)
|
||||
find_package(rocrand REQUIRED)
|
||||
endif()
|
||||
return()
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
|
||||
"Paths to headers required by HYPRE." "Libraries required by HYPRE."
|
||||
CHECK_BUILD HYPRE_USING_HIP FALSE
|
||||
"
|
||||
#undef HYPRE_USING_HIP
|
||||
#include <HYPRE_config.h>
|
||||
|
||||
#ifndef HYPRE_USING_HIP
|
||||
#error HYPRE is built without HIP.
|
||||
#endif
|
||||
|
||||
int main()
|
||||
{
|
||||
return 0;
|
||||
}
|
||||
")
|
||||
"Paths to headers required by HYPRE." "Libraries required by HYPRE.")
|
||||
|
||||
if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
|
||||
try_run(HYPRE_VERSION_RUN_RESULT HYPRE_VERSION_COMPILE_RESULT
|
||||
@@ -56,12 +33,3 @@ if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
|
||||
message(FATAL_ERROR "Unable to determine HYPRE version.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
if (HYPRE_FOUND AND HYPRE_USING_HIP)
|
||||
find_package(rocsparse REQUIRED)
|
||||
find_package(rocrand REQUIRED)
|
||||
list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES})
|
||||
set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
|
||||
"HYPRE libraries + dependencies." FORCE)
|
||||
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -25,16 +25,16 @@ mfem_find_package(METIS METIS METIS_DIR "include;Lib" "metis.h"
|
||||
|
||||
int main()
|
||||
{
|
||||
idx_t n = 10;
|
||||
idx_t nparts = 5;
|
||||
idx_t edgecut;
|
||||
idx_t* partitioning = new idx_t[10];
|
||||
idx_t* I = partitioning,
|
||||
int n = 10;
|
||||
int nparts = 5;
|
||||
int edgecut;
|
||||
int* partitioning = new int[10];
|
||||
int* I = partitioning,
|
||||
* J = partitioning;
|
||||
|
||||
idx_t ncon = 1;
|
||||
int ncon = 1;
|
||||
int err;
|
||||
idx_t options[40];
|
||||
int options[40];
|
||||
|
||||
METIS_SetDefaultOptions(options);
|
||||
options[10] = 1; // set METIS_OPTION_CONTIG
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,27 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MKL_PARDISO_FOUND
|
||||
# - MKL_PARDISO_LIBRARIES
|
||||
# - MKL_PARDISO_INCLUDE_DIRS
|
||||
|
||||
if(NOT MKL_LIBRARY_DIR)
|
||||
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
|
||||
set(MKL_LIBRARY_DIR "lib/intel64")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MKL_PARDISO MKL_PARDISO
|
||||
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
|
||||
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
|
||||
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
|
||||
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,39 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Sets the following variables:
|
||||
# - MUMPS_FOUND
|
||||
# - MUMPS_LIBRARIES
|
||||
# - MUMPS_INCLUDE_DIRS
|
||||
# - MUMPS_VERSION
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"include" dmumps_c.h "lib" dmumps
|
||||
"Paths to headers required by MUMPS."
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
${CMAKE_CURRENT_BINARY_DIR}/config
|
||||
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
|
||||
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
|
||||
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
|
||||
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
|
||||
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
|
||||
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
|
||||
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unable to determine MUMPS version.")
|
||||
endif()
|
||||
endif()
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -10,13 +10,11 @@
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - BLITZ_FOUND
|
||||
# - BLITZ_LIBRARIES
|
||||
# - BLITZ_INCLUDE_DIRS
|
||||
# - MESQUITE_FOUND
|
||||
# - MESQUITE_LIBRARIES
|
||||
# - MESQUITE_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Blitz BLITZ BLITZ_DIR
|
||||
"include" "blitz/blitz.h"
|
||||
"lib" "blitz"
|
||||
"Paths to headers required by Blitz."
|
||||
"Libraries required by Blitz.")
|
||||
mfem_find_package(Mesquite MESQUITE MESQUITE_DIR
|
||||
"include" "Mesquite_all_headers.hpp" "lib" "mesquite"
|
||||
"Paths to headers required by Mesquite." "Libraries required by Mesquite.")
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,38 +14,6 @@
|
||||
# - NETCDF_LIBRARIES
|
||||
# - NETCDF_INCLUDE_DIRS
|
||||
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
|
||||
# We need to guard against the case where HDF5 was already found but without
|
||||
# the HL extensions (in which case mfem_find_package will treat the package
|
||||
# as already having been found), so we reset the variable to force FindHDF5.cmake
|
||||
# to be called for a second time
|
||||
set(HDF5_FOUND OFF)
|
||||
enable_language(C) # FindHDF5.cmake uses the C compiler
|
||||
|
||||
mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
|
||||
"Paths to headers required by NetCDF." "Libraries required by NetCDF.")
|
||||
|
||||
# The HL extension libraries are in a separate variable and must precede
|
||||
# the "regular" hdf5 library, as hdf5_hl depends on hdf5
|
||||
# The netcdf library will always be the first element of NETCDF_LIBRARIES
|
||||
# and we need to insert after that library but before the hdf5 library, so
|
||||
# position 1 is used
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
if (HDF5_C_LIBRARY_hdf5_hl)
|
||||
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
if (NOT NetCDF_FIND_QUIETLY)
|
||||
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - PARELAG_FOUND
|
||||
# - PARELAG_LIBRARIES
|
||||
# - PARELAG_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(PARELAG PARELAG PARELAG_DIR "" "" "" ""
|
||||
"Paths to headers required by ParELAG." "Libraries required by ParELAG.")
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,27 +14,17 @@
|
||||
# - RAJA_LIBRARIES
|
||||
# - RAJA_INCLUDE_DIRS
|
||||
|
||||
if (RAJA_FOUND)
|
||||
return()
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
|
||||
"Paths to headers required by RAJA." "Libraries required by RAJA.")
|
||||
|
||||
if (NOT RAJA_CONFIG_CMAKE)
|
||||
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
|
||||
endif()
|
||||
message(STATUS "Looking for RAJA ...")
|
||||
if (RAJA_DIR)
|
||||
message(STATUS " in RAJA_DIR = ${RAJA_DIR}")
|
||||
find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
|
||||
endif()
|
||||
if (NOT RAJA_FOUND)
|
||||
message(STATUS " in standard CMake locations")
|
||||
find_package(RAJA CONFIG)
|
||||
endif()
|
||||
if (RAJA_FOUND)
|
||||
set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
|
||||
set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
|
||||
message(STATUS
|
||||
"Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (RAJA_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
if (EXISTS "${RAJA_CONFIG_CMAKE}")
|
||||
include("${RAJA_CONFIG_CMAKE}")
|
||||
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
|
||||
message(FATAL_ERROR
|
||||
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
|
||||
endif()
|
||||
message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
|
||||
ADD_COMPONENT NVector_Cuda
|
||||
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
|
||||
ADD_COMPONENT NVector_Hip
|
||||
"include" nvector/nvector_hip.h "lib" sundials_nvechip
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT NVector_Parallel
|
||||
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
|
||||
ADD_COMPONENT NVector_MPIPlusX
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,23 +14,6 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
find_package(umpire CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
if (UMPIRE_FOUND)
|
||||
message(STATUS
|
||||
"Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (UMPIRE_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
endif()
|
||||
message(${msg}
|
||||
"UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
|
||||
endif()
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
|
||||
"Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -43,20 +43,6 @@ function(convert_filenames_to_full_paths NAMES)
|
||||
set(${NAMES} ${tmp_names} PARENT_SCOPE)
|
||||
endfunction()
|
||||
|
||||
# Wrapper for add_executable
|
||||
macro(mfem_add_executable NAME)
|
||||
add_executable(${NAME} ${ARGN})
|
||||
if (MFEM_USE_CUDA)
|
||||
set_target_properties(${NAME} PROPERTIES
|
||||
CUDA_RESOLVE_DEVICE_SYMBOLS ON)
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# Wrapper for add_library
|
||||
macro(mfem_add_library NAME)
|
||||
add_library(${NAME} ${ARGN})
|
||||
endmacro()
|
||||
|
||||
# Simple shortcut to add_custom_target() with option to add the target to the
|
||||
# main target.
|
||||
function(add_mfem_target TARGET_NAME ADD_TO_ALL)
|
||||
@@ -70,7 +56,7 @@ function(add_mfem_target TARGET_NAME ADD_TO_ALL)
|
||||
endfunction()
|
||||
|
||||
# Add mfem examples
|
||||
macro(add_mfem_examples EXE_SRCS)
|
||||
function(add_mfem_examples EXE_SRCS)
|
||||
set(EXE_PREFIX "")
|
||||
set(EXE_PREREQUISITE "")
|
||||
set(EXE_NEEDED_BY "")
|
||||
@@ -86,15 +72,13 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
foreach(SRC_FILE IN LISTS ${EXE_SRCS})
|
||||
# If CUDA is enabled, tag source files to be compiled with nvcc.
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${SRC_FILE} PROPERTIES LANGUAGE CUDA)
|
||||
set_property(SOURCE ${SRC_FILE} PROPERTY LANGUAGE CUDA)
|
||||
endif()
|
||||
|
||||
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
|
||||
|
||||
string(REPLACE ".cpp" "" EXE_NAME "${EXE_PREFIX}${SRC_FILENAME}")
|
||||
mfem_add_executable(${EXE_NAME} ${SRC_FILE})
|
||||
install(TARGETS ${EXE_NAME}
|
||||
RUNTIME DESTINATION examples)
|
||||
add_executable(${EXE_NAME} ${SRC_FILE})
|
||||
add_dependencies(${MFEM_ALL_EXAMPLES_TARGET_NAME} ${EXE_NAME})
|
||||
if (EXE_NEEDED_BY)
|
||||
add_dependencies(${EXE_NEEDED_BY} ${EXE_NAME})
|
||||
@@ -103,11 +87,30 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
|
||||
|
||||
target_link_libraries(${EXE_NAME} mfem)
|
||||
if (MFEM_USE_MPI)
|
||||
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
|
||||
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
|
||||
|
||||
# Language-specific include directories:
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endforeach(SRC_FILE)
|
||||
endmacro()
|
||||
endfunction()
|
||||
|
||||
# A slightly more versatile function for adding miniapps to MFEM
|
||||
macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
function(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
# Parse the input arguments looking for the things we need
|
||||
set(POSSIBLE_ARGS "MAIN" "EXTRA_SOURCES" "EXTRA_HEADERS" "EXTRA_OPTIONS" "EXTRA_DEFINES" "LIBRARIES")
|
||||
set(CURRENT_ARG)
|
||||
@@ -123,7 +126,8 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
|
||||
# If CUDA is enabled, tag source files to be compiled with nvcc.
|
||||
if (MFEM_USE_CUDA)
|
||||
set_source_files_properties(${MAIN_LIST} ${EXTRA_SOURCES_LIST} PROPERTIES LANGUAGE CUDA)
|
||||
set_property(SOURCE ${MAIN_LIST} ${EXTRA_SOURCES_LIST}
|
||||
PROPERTY LANGUAGE CUDA)
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.12.0)
|
||||
list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
|
||||
else()
|
||||
@@ -136,24 +140,61 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
endif()
|
||||
|
||||
# Actually add the executable
|
||||
mfem_add_executable(${MFEM_EXE_NAME} ${MAIN_LIST}
|
||||
${EXTRA_SOURCES_LIST} ${EXTRA_HEADERS_LIST})
|
||||
add_executable(${MFEM_EXE_NAME} ${MAIN_LIST}
|
||||
${EXTRA_SOURCES_LIST} ${EXTRA_HEADERS_LIST})
|
||||
add_dependencies(${MFEM_ALL_MINIAPPS_TARGET_NAME} ${MFEM_EXE_NAME})
|
||||
add_dependencies(${MFEM_EXE_NAME} ${MFEM_EXEC_PREREQUISITES_TARGET_NAME})
|
||||
|
||||
# Append the additional libraries and options
|
||||
if (LIBRARIES_LIST)
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
|
||||
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
|
||||
else()
|
||||
target_link_libraries(${MFEM_EXE_NAME} ${LIBRARIES_LIST})
|
||||
endif()
|
||||
endif()
|
||||
if (EXTRA_OPTIONS_LIST)
|
||||
string(REPLACE ";" " " EXTRA_OPTIONS_STRING "${EXTRA_OPTIONS_LIST}")
|
||||
message(STATUS "${MFEM_EXE_NAME}: add flags \"${EXTRA_OPTIONS_STRING}\"")
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
|
||||
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
|
||||
else()
|
||||
get_target_property(THIS_COMPILE_FLAGS ${MFEM_EXE_NAME} COMPILE_FLAGS)
|
||||
if (THIS_COMPILE_FLAGS)
|
||||
set(THIS_COMPILE_FLAGS "${THIS_COMPILE_FLAGS} ${EXTRA_OPTIONS_STRING}")
|
||||
else()
|
||||
set(THIS_COMPILE_FLAGS "${EXTRA_OPTIONS_STRING}")
|
||||
endif()
|
||||
set_target_properties(${MFEM_EXE_NAME}
|
||||
PROPERTIES COMPILE_FLAGS ${THIS_COMPILE_FLAGS})
|
||||
endif()
|
||||
endif()
|
||||
if (EXTRA_DEFINES_LIST)
|
||||
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# Handle the MPI separately
|
||||
if (MFEM_USE_MPI)
|
||||
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
|
||||
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
|
||||
else()
|
||||
target_link_libraries(${MFEM_EXE_NAME} ${MPI_CXX_LIBRARIES})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_FLAGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endfunction()
|
||||
|
||||
|
||||
# Auxiliary function, used in mfem_find_package().
|
||||
@@ -194,7 +235,7 @@ endfunction(mfem_find_component)
|
||||
# code snippets. Additionally, a list of required/optional/alternative
|
||||
# packages (given by ${Name}_REQUIRED_PACKAGES) are searched for and added to
|
||||
# the ${Prefix}_INCLUDE_DIRS and ${Prefix}_LIBRARIES lists. The variable
|
||||
# ${Name}_REQUIRED_LIBRARIES can be set to specify any additional libraries
|
||||
# ${Name}_REQUIRED_LIBRARIES can be set to spcecify any additional libraries
|
||||
# that are needed. This function defines the following CACHE variables:
|
||||
#
|
||||
# ${Prefix}_FOUND
|
||||
@@ -397,9 +438,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
break()
|
||||
endif()
|
||||
endforeach()
|
||||
if (Required AND NOT ${ReqPack}_FOUND)
|
||||
if (${Required} AND NOT ${ReqPack}_FOUND)
|
||||
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
|
||||
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
@@ -465,23 +506,16 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
endif()
|
||||
get_target_property(IsImported ${TargetName} IMPORTED)
|
||||
if (IsImported)
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
|
||||
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
|
||||
if (NOT ImportConfig)
|
||||
set(ImportConfig RELEASE)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if (_Index EQUAL -1)
|
||||
list(GET ImpConfigs 0 ImportConfig)
|
||||
endif()
|
||||
endif()
|
||||
set(ImportConfigSuffix "_${ImportConfig}")
|
||||
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
set(ImportConfig "NO_CONFIG")
|
||||
set(ImportConfigSuffix "")
|
||||
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
|
||||
# "${ImportConfig} not found. Set ${ReqPack}_IMPORT_CONFIG "
|
||||
# "from the list: ${ImpConfigs}.")
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if (_Index EQUAL -1)
|
||||
message(FATAL_ERROR " *** ${ReqPack}: configuration "
|
||||
"${ImportConfig} not found. Set ${ReqPack}_IMPORT_CONFIG "
|
||||
"from the list: ${ImpConfigs}.")
|
||||
endif()
|
||||
endif()
|
||||
# Set _Pack_LIBS
|
||||
@@ -493,9 +527,8 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
endif()
|
||||
else()
|
||||
# Set _Pack_LIBS from the target properties for ImportConfig
|
||||
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
|
||||
INTERFACE_LINK_LIBRARIES)
|
||||
foreach (_prop IMPORTED_LOCATION_${ImportConfig}
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES_${ImportConfig})
|
||||
get_target_property(_value ${TargetName} ${_prop})
|
||||
if (_value)
|
||||
list(APPEND _Pack_LIBS ${_value})
|
||||
@@ -507,7 +540,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
endif()
|
||||
endif()
|
||||
# Set _Pack_INCS
|
||||
foreach (_prop INCLUDE_DIRECTORIES INTERFACE_INCLUDE_DIRECTORIES)
|
||||
foreach (_prop INCLUDE_DIRECTORIES)
|
||||
get_target_property(_value ${TargetName} ${_prop})
|
||||
if (_value)
|
||||
list(APPEND _Pack_INCS ${_value})
|
||||
@@ -685,146 +718,6 @@ function(mfem_find_library Name Prefix Lib LibDoc CheckVar CheckSrc)
|
||||
endfunction(mfem_find_library)
|
||||
|
||||
|
||||
#
|
||||
# Extract compile and link options needed by the given target.
|
||||
#
|
||||
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
|
||||
if (NOT TARGET ${Target})
|
||||
return()
|
||||
endif()
|
||||
|
||||
# CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG -> '-Wl,-rpath,'
|
||||
set(shared_link_flag ${CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG})
|
||||
if (NOT shared_link_flag)
|
||||
set(shared_link_flag "-Wl,-rpath,")
|
||||
endif()
|
||||
|
||||
set(tgt "${Target}")
|
||||
unset(CompileOpts)
|
||||
unset(LinkOpts)
|
||||
get_target_property(IsImported ${tgt} IMPORTED)
|
||||
# message(STATUS "${tgt}[IMPORTED]: ${IsImported}")
|
||||
# Generally, the possible target types are: STATIC_LIBRARY, MODULE_LIBRARY,
|
||||
# SHARED_LIBRARY, INTERFACE_LIBRARY, EXECUTABLE.
|
||||
get_target_property(type ${tgt} TYPE)
|
||||
# message(STATUS "${tgt}[TYPE]: ${type}")
|
||||
unset(ImportConfig)
|
||||
get_target_property(ImportConfigs ${tgt} IMPORTED_CONFIGURATIONS)
|
||||
if (ImportConfigs)
|
||||
list(GET ImportConfigs 0 ImportConfig)
|
||||
endif()
|
||||
if (NOT ImportConfig)
|
||||
set(ImportConfig RELEASE)
|
||||
endif()
|
||||
# message(STATUS "${tgt}[ImportConfig]: ${ImportConfig}")
|
||||
# List all properties with: cmake --help-property-list
|
||||
get_target_property(Defs ${tgt} INTERFACE_COMPILE_DEFINITIONS)
|
||||
if (Defs)
|
||||
list(REMOVE_DUPLICATES Defs)
|
||||
foreach(Def ${Defs})
|
||||
list(APPEND CompileOpts "-D${Def}")
|
||||
endforeach()
|
||||
endif()
|
||||
get_target_property(Opts ${tgt} INTERFACE_COMPILE_OPTIONS)
|
||||
if (Opts)
|
||||
foreach(Opt ${Opts})
|
||||
list(APPEND CompileOpts "${Opt}")
|
||||
endforeach()
|
||||
endif()
|
||||
get_target_property(Dirs ${tgt} INTERFACE_INCLUDE_DIRECTORIES)
|
||||
if (Dirs)
|
||||
list(REMOVE_DUPLICATES Dirs)
|
||||
foreach(Dir ${Dirs})
|
||||
list(APPEND CompileOpts "-I\"${Dir}\"")
|
||||
endforeach()
|
||||
endif()
|
||||
get_target_property(SysDirs ${tgt} INTERFACE_SYSTEM_INCLUDE_DIRECTORIES)
|
||||
if (SysDirs)
|
||||
list(REMOVE_DUPLICATES SysDirs)
|
||||
foreach(SysDir ${SysDirs})
|
||||
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
|
||||
endforeach()
|
||||
endif()
|
||||
set(AddInterfaceLinkLibs TRUE)
|
||||
if ("${type}" STREQUAL "STATIC_LIBRARY")
|
||||
get_target_property(Location ${tgt} LOCATION)
|
||||
if (Location)
|
||||
list(APPEND LinkOpts "\"${Location}\"")
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
|
||||
endif()
|
||||
elseif ("${type}" STREQUAL "SHARED_LIBRARY")
|
||||
get_target_property(Location ${tgt} LOCATION)
|
||||
if (Location)
|
||||
get_filename_component(Dir ${Location} DIRECTORY)
|
||||
get_filename_component(NameWE ${Location} NAME_WE)
|
||||
string(REGEX REPLACE "^lib" "" LibName ${NameWE})
|
||||
list(APPEND LinkOpts
|
||||
"-L\"${Dir}\""
|
||||
"${shared_link_flag}\"${Dir}\""
|
||||
"-l${LibName}")
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
|
||||
endif()
|
||||
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
|
||||
# The INTERFACE_LINK_LIBRARIES property is handled below.
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
set(AddInterfaceLinkLibs FALSE)
|
||||
endif()
|
||||
if (AddInterfaceLinkLibs)
|
||||
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
|
||||
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
|
||||
if (Libs)
|
||||
foreach(Lib ${Libs})
|
||||
if (NOT (TARGET ${Lib}))
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
endif()
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
list(APPEND CompileOpts ${COpts})
|
||||
list(APPEND LinkOpts ${LOpts})
|
||||
endif()
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Other potentially relevant properties:
|
||||
# - For all target types:
|
||||
# IMPORTED_LIBNAME
|
||||
# IMPORTED_LIBNAME_${ImportConfig}
|
||||
# INTERFACE_AUTOUIC_OPTIONS
|
||||
# INTERFACE_COMPILE_FEATURES
|
||||
# INTERFACE_POSITION_INDEPENDENT_CODE
|
||||
# INTERFACE_SOURCES
|
||||
# INTERFACE_SYSTEM_INCLUDE_DIRECTORIES)
|
||||
# - For non-"INTERFACE_LIBRARY" target types only:
|
||||
# IMPORTED_LOCATION
|
||||
# IMPORTED_LOCATION_${ImportConfig}
|
||||
# IMPORTED_LINK_INTERFACE_LIBRARIES
|
||||
# IMPORTED_LINK_INTERFACE_LIBRARIES_${ImportConfig}
|
||||
# LINK_FLAGS
|
||||
# LINK_FLAGS_${ImportConfig}
|
||||
# LOCATION_${ImportConfig})
|
||||
|
||||
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
|
||||
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
|
||||
|
||||
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
|
||||
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
|
||||
|
||||
endfunction(mfem_get_target_options)
|
||||
|
||||
|
||||
#
|
||||
# Function that creates 'config.mk' from 'config.mk.in' for the both the
|
||||
# build- and the install-locations and define install rules for 'config.mk'
|
||||
@@ -840,19 +733,16 @@ function(mfem_export_mk_files)
|
||||
set(shared_link_flag "-Wl,-rpath,")
|
||||
endif()
|
||||
|
||||
# Convert Boolean vars to YES/NO without writing the values to cache
|
||||
# Convert Boolean vars to YES/NO without writting the values to cache
|
||||
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
|
||||
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
|
||||
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
|
||||
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
|
||||
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
|
||||
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
|
||||
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GINKGO MFEM_USE_AMGX
|
||||
MFEM_USE_GNUTLS MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC
|
||||
MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_CONDUIT MFEM_USE_PUMI
|
||||
MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA MFEM_USE_UMPIRE MFEM_USE_SIMD
|
||||
MFEM_USE_ADIOS2)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
set(${var} YES)
|
||||
@@ -864,16 +754,10 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${MFEM_CXX})
|
||||
set(MFEM_CPPFLAGS "")
|
||||
get_target_property(cxx_std mfem CXX_STANDARD)
|
||||
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
|
||||
# property is set, then we need to use a variable like:
|
||||
# CMAKE_CXX11_EXTENSION_COMPILE_OPTION
|
||||
set(cxx_std_flag ${CMAKE_CXX${cxx_std}_STANDARD_COMPILE_OPTION})
|
||||
string(STRIP
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
string(STRIP "${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
endforeach()
|
||||
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
|
||||
@@ -936,11 +820,9 @@ function(mfem_export_mk_files)
|
||||
string(REGEX REPLACE "^SCOREC::" "" libname ${pumilib})
|
||||
string(FIND "${pumilib}" ".a" staticlib)
|
||||
string(FIND "${pumilib}" ".so" sharedlib)
|
||||
string(FIND "${pumilib}" ".dylib" dynamiclib)
|
||||
find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFAULT_PATH)
|
||||
find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFUALT_PATH)
|
||||
if (NOT "${sharedlib}" MATCHES "-1" OR
|
||||
NOT "${staticlib}" MATCHES "-1" OR
|
||||
NOT "${dynamiclib}" MATCHES "-1" )
|
||||
NOT "${staticlib}" MATCHES "-1" )
|
||||
set(MFEM_EXT_LIBS "${pumilib} ${MFEM_EXT_LIBS}")
|
||||
elseif (NOT "${lib}" MATCHES "lib-NOTFOUND")
|
||||
set(MFEM_EXT_LIBS "${lib} ${MFEM_EXT_LIBS}")
|
||||
@@ -955,19 +837,9 @@ function(mfem_export_mk_files)
|
||||
foreach(lib ${TPL_LIBRARIES})
|
||||
get_filename_component(suffix ${lib} EXT)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
|
||||
elseif (TARGET "${lib}")
|
||||
mfem_get_target_options(${lib} CompileOpts LinkOpts)
|
||||
# Removing duplicates may lead to issues:
|
||||
# list(REMOVE_DUPLICATES CompileOpts)
|
||||
# list(REMOVE_DUPLICATES LinkOpts)
|
||||
string(REPLACE ";" " " COpts "${CompileOpts}")
|
||||
string(REPLACE ";" " " LOpts "${LinkOpts}")
|
||||
# message(STATUS "${lib}[COpts]: '${COpts}'")
|
||||
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
|
||||
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*")
|
||||
elseif (NOT "${lib}" MATCHES "SCOREC::.*" AND "${lib}" MATCHES ".*::.*")
|
||||
message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
get_filename_component(dir ${lib} DIRECTORY)
|
||||
|
||||
+2
-32
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,37 +30,10 @@
|
||||
#endif
|
||||
|
||||
// Windows specific options
|
||||
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
|
||||
#ifdef _WIN32
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
// Macro MFEM_EXPORT: this macro is used when declaring exported global
|
||||
// variables and static class variables in public header files, e.g.:
|
||||
// extern MFEM_EXPORT Geometry Geometries;
|
||||
// static MFEM_EXPORT Device device_singleton;
|
||||
// In cases where a class contains multiple static variables, instead of marking
|
||||
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
|
||||
// e.g.:
|
||||
// class MFEM_EXPORT MemoryManager ...
|
||||
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
|
||||
// variable that needs MFEM_EXPORT does not have it. However, builds with
|
||||
// optional external libraries are not tested and may require separate checks to
|
||||
// determine the necessity of MFEM_EXPORT.
|
||||
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
|
||||
#ifdef mfem_EXPORTS
|
||||
#define MFEM_EXPORT __declspec(dllexport)
|
||||
#else
|
||||
#define MFEM_EXPORT __declspec(dllimport)
|
||||
#endif
|
||||
#else
|
||||
#define MFEM_EXPORT
|
||||
#endif
|
||||
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
|
||||
// the following macro allows us to get M_PI and some needed functions, e.g.
|
||||
// posix_memalign(), strdup(), strerror_r().
|
||||
#ifdef __CYGWIN__
|
||||
#define _XOPEN_SOURCE 600
|
||||
#endif
|
||||
|
||||
// Check dependencies:
|
||||
|
||||
@@ -69,9 +42,6 @@
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
#error Building with SuperLU_DIST (MFEM_USE_SUPERLU=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_MUMPS
|
||||
#error Building with MUMPS (MFEM_USE_MUMPS=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_STRUMPACK
|
||||
#error Building with STRUMPACK (MFEM_USE_STRUMPACK=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
|
||||
+17
-48
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,18 +30,15 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// The absolute path of the MFEM source prefix.
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix.
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
// #define MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
@@ -88,63 +85,56 @@
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
// #define MFEM_USE_SUNDIALS
|
||||
|
||||
// Enable MFEM functionality based on the Mesquite library.
|
||||
// #define MFEM_USE_MESQUITE
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
// #define MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
// Enable MFEM functionality based on the SuperLU library.
|
||||
// #define MFEM_USE_SUPERLU
|
||||
// #define MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
// #define MFEM_USE_MUMPS
|
||||
// #define MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// Enable MFEM features based on the Ginkgo library
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// #define MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable secure socket streams based on the GNUTLS library
|
||||
// #define MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
// Enable Sidre support
|
||||
// #define MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
// #define MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
// #define MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
// Enable Conduit support
|
||||
// #define MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files)
|
||||
// #define MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
// #define MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
// #define MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
// #define MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
@@ -164,12 +154,6 @@
|
||||
// Enable functionality based on the libCEED library.
|
||||
// #define MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
// #define MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Algoim library.
|
||||
// #define MFEM_USE_ALGOIM
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// #define MFEM_USE_UMPIRE
|
||||
|
||||
@@ -186,19 +170,4 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
// #define MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
// #define MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// #define MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// #define MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// #define MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable the Enzyme LLVM plugin
|
||||
// #define MFEM_USE_ENZYME
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
+3
-12
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -29,10 +29,10 @@ MFEM_USE_OPENMP = @MFEM_USE_OPENMP@
|
||||
MFEM_USE_MEMALLOC = @MFEM_USE_MEMALLOC@
|
||||
MFEM_TIMER_TYPE = @MFEM_TIMER_TYPE@
|
||||
MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
|
||||
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
|
||||
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
|
||||
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
|
||||
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
|
||||
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
|
||||
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
|
||||
MFEM_USE_AMGX = @MFEM_USE_AMGX@
|
||||
@@ -42,7 +42,6 @@ MFEM_USE_PETSC = @MFEM_USE_PETSC@
|
||||
MFEM_USE_SLEPC = @MFEM_USE_SLEPC@
|
||||
MFEM_USE_MPFR = @MFEM_USE_MPFR@
|
||||
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_FMS = @MFEM_USE_FMS@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_PUMI = @MFEM_USE_PUMI@
|
||||
MFEM_USE_HIOP = @MFEM_USE_HIOP@
|
||||
@@ -52,18 +51,10 @@ MFEM_USE_HIP = @MFEM_USE_HIP@
|
||||
MFEM_USE_RAJA = @MFEM_USE_RAJA@
|
||||
MFEM_USE_OCCA = @MFEM_USE_OCCA@
|
||||
MFEM_USE_CEED = @MFEM_USE_CEED@
|
||||
MFEM_USE_CALIPER = @MFEM_USE_CALIPER@
|
||||
MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
|
||||
MFEM_USE_SIMD = @MFEM_USE_SIMD@
|
||||
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
|
||||
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
|
||||
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
|
||||
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
|
||||
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
|
||||
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
|
||||
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
MFEM_CXX = @MFEM_CXX@
|
||||
@@ -93,7 +84,7 @@ MFEM_MPIEXEC_NP = @MFEM_MPIEXEC_NP@
|
||||
MFEM_MPI_NP = @MFEM_MPI_NP@
|
||||
|
||||
# The NVCC compiler cannot link with -x=cu
|
||||
MFEM_LINK_FLAGS := $(filter-out -x=cu -xhip, $(MFEM_FLAGS))
|
||||
MFEM_LINK_FLAGS := $(filter-out -x=cu, $(MFEM_FLAGS))
|
||||
|
||||
# Optional extra configuration
|
||||
@MFEM_CONFIG_EXTRA@
|
||||
|
||||
+9
-71
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
|
||||
endif()
|
||||
|
||||
# MFEM options. Set to mimic the default "defaults.mk" file.
|
||||
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
|
||||
@@ -31,10 +30,10 @@ option(MFEM_USE_OPENMP "Enable the OpenMP backend" OFF)
|
||||
option(MFEM_USE_LEGACY_OPENMP "Enable legacy OpenMP usage" OFF)
|
||||
option(MFEM_USE_MEMALLOC "Enable the internal MEMALLOC option." ON)
|
||||
option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
|
||||
option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
|
||||
option(MFEM_USE_SUITESPARSE "Enable SuiteSparse usage" OFF)
|
||||
option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
|
||||
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
|
||||
option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
|
||||
option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
|
||||
option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
|
||||
option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
|
||||
@@ -45,32 +44,17 @@ option(MFEM_USE_PETSC "Enable PETSc support." OFF)
|
||||
option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
|
||||
option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
|
||||
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
|
||||
option(MFEM_USE_FMS "Enable FMS usage" OFF)
|
||||
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
|
||||
option(MFEM_USE_PUMI "Enable PUMI" OFF)
|
||||
option(MFEM_USE_HIOP "Enable HiOp" OFF)
|
||||
option(MFEM_USE_CUDA "Enable CUDA" OFF)
|
||||
option(MFEM_USE_HIP "Enable HIP" OFF)
|
||||
option(MFEM_USE_OCCA "Enable OCCA" OFF)
|
||||
option(MFEM_USE_RAJA "Enable RAJA" OFF)
|
||||
option(MFEM_USE_CEED "Enable CEED" OFF)
|
||||
option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
|
||||
option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
|
||||
option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
|
||||
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
|
||||
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
|
||||
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
|
||||
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
|
||||
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
|
||||
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
|
||||
|
||||
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
|
||||
# set(MFEM_MPIEXEC "mpirun" CACHE STRING "Command for running MPI tests")
|
||||
# set(MFEM_MPIEXEC_NP "-np" CACHE STRING
|
||||
# "Flag for setting the number of MPI tasks")
|
||||
|
||||
set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
|
||||
|
||||
@@ -82,7 +66,6 @@ set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
|
||||
option(MFEM_ENABLE_TESTING "Enable the ctest framework for testing" ON)
|
||||
option(MFEM_ENABLE_EXAMPLES "Build all of the examples" OFF)
|
||||
option(MFEM_ENABLE_MINIAPPS "Build all of the miniapps" OFF)
|
||||
option(MFEM_ENABLE_GOOGLE_BENCHMARKS "Build all of the Google benchmarks" OFF)
|
||||
|
||||
# Setting CXX/MPICXX on the command line or in user.cmake will overwrite the
|
||||
# autodetected C++ compiler.
|
||||
@@ -92,9 +75,6 @@ option(MFEM_ENABLE_GOOGLE_BENCHMARKS "Build all of the Google benchmarks" OFF)
|
||||
# Set the target CUDA architecture
|
||||
set(CUDA_ARCH "sm_60" CACHE STRING "Target CUDA architecture.")
|
||||
|
||||
# Set the target HIP architecture
|
||||
set(HIP_ARCH "gfx900" CACHE STRING "Target HIP architecture.")
|
||||
|
||||
set(MFEM_DIR ${CMAKE_CURRENT_SOURCE_DIR})
|
||||
|
||||
# The *_DIR paths below will be the first place searched for the corresponding
|
||||
@@ -106,12 +86,6 @@ set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
|
||||
# If hypre was compiled to depend on BLAS and LAPACK:
|
||||
# set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
|
||||
# "Packages that HYPRE depends on.")
|
||||
if (MFEM_USE_CUDA)
|
||||
# This is only necessary when hypre is built with cuda:
|
||||
set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
|
||||
"Libraries that HYPRE depends on.")
|
||||
endif()
|
||||
# HIP dependency for HYPRE is handled in FindHYPRE.cmake.
|
||||
|
||||
set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
|
||||
|
||||
@@ -125,6 +99,9 @@ set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
|
||||
# set(SUNDIALS_REQUIRED_PACKAGES "SuiteSparse/KLU/AMD/BTF/COLAMD/config"
|
||||
# CACHE STRING "Additional packages required by SUNDIALS.")
|
||||
|
||||
set(MESQUITE_DIR "${MFEM_DIR}/../mesquite-2.99" CACHE PATH
|
||||
"Path to the Mesquite library.")
|
||||
|
||||
set(SuiteSparse_DIR "${MFEM_DIR}/../SuiteSparse" CACHE PATH
|
||||
"Path to the SuiteSparse library.")
|
||||
set(SuiteSparse_REQUIRED_PACKAGES "BLAS" "METIS"
|
||||
@@ -135,23 +112,12 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
|
||||
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
|
||||
"Additional packages required by ParMETIS.")
|
||||
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
|
||||
"Path to the SuperLU_DIST library.")
|
||||
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
|
||||
"LAPACK" "BLAS" CACHE STRING
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
"Additional packages required by SuperLU_DIST.")
|
||||
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
|
||||
"Path to the MUMPS library.")
|
||||
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
|
||||
"Additional packages required by MUMPS.")
|
||||
# If the MPI package does not find all required Fortran libraries:
|
||||
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
# "Additional libraries required by MUMPS.")
|
||||
|
||||
set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
|
||||
"Path to the STRUMPACK library.")
|
||||
# STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
|
||||
@@ -188,9 +154,9 @@ set(GNUTLS_DIR "" CACHE PATH "Path to the GnuTLS library.")
|
||||
|
||||
set(GSLIB_DIR "" CACHE PATH "Path to the GSLIB library.")
|
||||
|
||||
set(HDF5_DIR "/usr" CACHE PATH "Path to the HDF5 library.")
|
||||
set(NETCDF_DIR "" CACHE PATH "Path to the NetCDF library.")
|
||||
set(NetCDF_REQUIRED_PACKAGES "HDF5/C/HL" CACHE STRING
|
||||
# May need to add "HDF5" as requirement.
|
||||
set(NetCDF_REQUIRED_PACKAGES "" CACHE STRING
|
||||
"Additional packages required by NetCDF.")
|
||||
|
||||
set(PETSC_DIR "${MFEM_DIR}/../petsc" CACHE PATH
|
||||
@@ -203,12 +169,6 @@ set(SLEPC_ARCH "arch-linux2-c-debug" CACHE STRING "SLEPC build architecture.")
|
||||
|
||||
set(MPFR_DIR "" CACHE PATH "Path to the MPFR library.")
|
||||
|
||||
set(FMS_DIR "${MFEM_DIR}/../fms" CACHE PATH
|
||||
"Path to the FMS library.")
|
||||
# If FMS is built with Conduit:
|
||||
# set(FMS_REQUIRED_PACKAGES "Conduit/relay" CACHE STRING
|
||||
# "Additional packages required by FMS.")
|
||||
|
||||
set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
|
||||
"Path to the Conduit library.")
|
||||
|
||||
@@ -229,38 +189,16 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
|
||||
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
|
||||
|
||||
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
|
||||
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
|
||||
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
|
||||
set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
|
||||
set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
|
||||
set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
|
||||
"Packages that ALGOIM depends on.")
|
||||
|
||||
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
|
||||
"Path to Google Benchmark")
|
||||
|
||||
# Provide paths, since ParELAG is dependent on MFEM and MFEM needs to be
|
||||
# compiled (or at least cmake needs to succeed) before compiling ParELAG.
|
||||
set(PARELAG_DIR "${MFEM_DIR}/../parelag" CACHE PATH "Path to ParELAG")
|
||||
set(PARELAG_INCLUDE_DIRS "${PARELAG_DIR}/src;${PARELAG_DIR}/build/src" CACHE
|
||||
STRING "Path to ParELAG headers.")
|
||||
set(PARELAG_LIBRARIES "${PARELAG_DIR}/build/src/libParELAG.a" CACHE STRING
|
||||
"The ParELAG library.")
|
||||
|
||||
set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
|
||||
set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
|
||||
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
|
||||
set(LAPACK_LIBRARIES "" CACHE STRING "The LAPACK library.")
|
||||
|
||||
set(CODIPACK_INCLUDE_DIRS "${MFEM_DIR}/../CoDiPack/include" CACHE STRING
|
||||
"Path to CoDiPack headers.")
|
||||
set(CODIPACK_LIBRARIES "")
|
||||
|
||||
# Some useful variables:
|
||||
set(CMAKE_SKIP_PREPROCESSED_SOURCE_RULES ON) # Skip *.i rules
|
||||
set(CMAKE_SKIP_ASSEMBLY_SOURCE_RULES ON) # Skip *.s rules
|
||||
|
||||
+50
-236
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -18,9 +18,6 @@
|
||||
# Some choices below are based on the OS type:
|
||||
NOTMAC := $(subst Darwin,,$(shell uname -s))
|
||||
|
||||
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
|
||||
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
|
||||
|
||||
CXX = g++
|
||||
MPICXX = mpicxx
|
||||
|
||||
@@ -42,9 +39,6 @@ STATIC = YES
|
||||
SHARED = NO
|
||||
|
||||
# CUDA configuration options
|
||||
#
|
||||
# If you set MFEM_USE_ENZYME=YES, CUDA_CXX has to be configured to use cuda with
|
||||
# clang as its host compiler.
|
||||
CUDA_CXX = nvcc
|
||||
CUDA_ARCH = sm_60
|
||||
CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
|
||||
@@ -58,16 +52,11 @@ HIP_CXX = hipcc
|
||||
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
|
||||
# gfx900, gfx1010, etc.
|
||||
HIP_ARCH = gfx900
|
||||
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
|
||||
HIP_XCOMPILER =
|
||||
HIP_XLINKER = -Wl,
|
||||
|
||||
# Flags for generating dependencies.
|
||||
DEP_FLAGS = -MM -MT
|
||||
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
|
||||
|
||||
ifneq ($(NOTMAC),)
|
||||
AR = ar
|
||||
ARFLAGS = crv
|
||||
ARFLAGS = cruv
|
||||
RANLIB = ranlib
|
||||
PICFLAG = $(XCOMPILER)-fPIC
|
||||
SO_EXT = so
|
||||
@@ -79,7 +68,7 @@ ifneq ($(NOTMAC),)
|
||||
else
|
||||
# Silence "has no symbols" warnings on Mac OS X
|
||||
AR = ar
|
||||
ARFLAGS = Scrv
|
||||
ARFLAGS = Scruv
|
||||
RANLIB = ranlib -no_warning_for_no_symbols
|
||||
PICFLAG = $(XCOMPILER)-fPIC
|
||||
SO_EXT = dylib
|
||||
@@ -92,9 +81,6 @@ else
|
||||
BUILD_RPATH = $(XLINKER)-undefined,dynamic_lookup
|
||||
INSTALL_SOFLAGS = $(subst $1 ,,$(call MAKE_SOFLAGS,$(MFEM_LIB_DIR)))
|
||||
INSTALL_RPATH = $(XLINKER)-undefined,dynamic_lookup
|
||||
# Silence unused command line argument warnings when generating dependencies
|
||||
# with mpicxx and clang
|
||||
DEP_FLAGS := -Wno-unused-command-line-argument $(DEP_FLAGS)
|
||||
endif
|
||||
|
||||
# Set CXXFLAGS to overwrite the default selection of DEBUG_FLAGS/OPTIM_FLAGS
|
||||
@@ -131,10 +117,10 @@ MFEM_USE_LEGACY_OPENMP = NO
|
||||
MFEM_USE_MEMALLOC = YES
|
||||
MFEM_TIMER_TYPE = $(if $(NOTMAC),2,4)
|
||||
MFEM_USE_SUNDIALS = NO
|
||||
MFEM_USE_MESQUITE = NO
|
||||
MFEM_USE_SUITESPARSE = NO
|
||||
MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_SUPERLU5 = NO
|
||||
MFEM_USE_MUMPS = NO
|
||||
MFEM_USE_STRUMPACK = NO
|
||||
MFEM_USE_GINKGO = NO
|
||||
MFEM_USE_AMGX = NO
|
||||
@@ -144,7 +130,6 @@ MFEM_USE_PETSC = NO
|
||||
MFEM_USE_SLEPC = NO
|
||||
MFEM_USE_MPFR = NO
|
||||
MFEM_USE_SIDRE = NO
|
||||
MFEM_USE_FMS = NO
|
||||
MFEM_USE_CONDUIT = NO
|
||||
MFEM_USE_PUMI = NO
|
||||
MFEM_USE_HIOP = NO
|
||||
@@ -154,49 +139,16 @@ MFEM_USE_HIP = NO
|
||||
MFEM_USE_RAJA = NO
|
||||
MFEM_USE_OCCA = NO
|
||||
MFEM_USE_CEED = NO
|
||||
MFEM_USE_CALIPER = NO
|
||||
MFEM_USE_ALGOIM = NO
|
||||
MFEM_USE_UMPIRE = NO
|
||||
MFEM_USE_SIMD = NO
|
||||
MFEM_USE_ADIOS2 = NO
|
||||
MFEM_USE_MKL_CPARDISO = NO
|
||||
MFEM_USE_MKL_PARDISO = NO
|
||||
MFEM_USE_MOONOLITH = NO
|
||||
MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
MFEM_USE_BENCHMARK = NO
|
||||
MFEM_USE_PARELAG = NO
|
||||
MFEM_USE_ENZYME = NO
|
||||
|
||||
# MPI library compile and link flags
|
||||
# These settings are used only when building MFEM with MPI + HIP
|
||||
ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
|
||||
# We determine MPI_DIR assuming $(MPICXX) is in $(MPI_DIR)/bin
|
||||
MPI_DIR := $(patsubst %/,%,$(dir $(shell which $(MPICXX))))
|
||||
MPI_DIR := $(patsubst %/,%,$(dir $(MPI_DIR)))
|
||||
MPI_OPT = -I$(MPI_DIR)/include
|
||||
MPI_LIB = -L$(MPI_DIR)/lib $(XLINKER)-rpath,$(MPI_DIR)/lib -lmpi
|
||||
endif
|
||||
|
||||
# ROCM/HIP directory such that ROCM/HIP libraries like rocsparse and rocrand are
|
||||
# found in $(HIP_DIR)/lib, usually as links. Typically, this directory is of
|
||||
# the form /opt/rocm-X.Y.Z which is called ROCM_PATH by hipconfig.
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
HIP_DIR := $(patsubst %/,%,$(dir $(shell which $(HIP_CXX))))
|
||||
HIP_DIR := $(patsubst %/,%,$(dir $(HIP_DIR)))
|
||||
ifeq (,$(wildcard $(HIP_DIR)/lib/librocsparse.*))
|
||||
HIP_DIR := $(shell hipconfig --rocmpath 2> /dev/null)
|
||||
ifeq (,$(wildcard $(HIP_DIR)/lib/librocsparse.*))
|
||||
$(error Unable to determine HIP_DIR. Please set it manually.)
|
||||
endif
|
||||
endif
|
||||
endif
|
||||
|
||||
# Compile and link options for zlib.
|
||||
ZLIB_DIR =
|
||||
ZLIB_OPT = $(if $(ZLIB_DIR),-I$(ZLIB_DIR)/include)
|
||||
ZLIB_LIB = $(if $(ZLIB_DIR),$(ZLIB_RPATH) -L$(ZLIB_DIR)/lib ,)-lz
|
||||
ZLIB_RPATH = $(XLINKER)-rpath,$(ZLIB_DIR)/lib
|
||||
ZLIB_RPATH = -Wl,-rpath,$(ZLIB_DIR)/lib
|
||||
|
||||
LIBUNWIND_OPT = -g
|
||||
LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
|
||||
@@ -205,18 +157,9 @@ LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
|
||||
HYPRE_DIR = @MFEM_DIR@/../hypre/src/hypre
|
||||
HYPRE_OPT = -I$(HYPRE_DIR)/include
|
||||
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
|
||||
ifeq (YES,$(MFEM_USE_CUDA))
|
||||
# This is only necessary when hypre is built with cuda:
|
||||
HYPRE_LIB += -lcusparse -lcurand -lcublas
|
||||
endif
|
||||
ifeq (YES,$(MFEM_USE_HIP))
|
||||
# This is only necessary when hypre is built with hip:
|
||||
HYPRE_LIB += -L$(HIP_DIR)/lib $(XLINKER)-rpath,$(HIP_DIR)/lib\
|
||||
-lrocsparse -lrocrand
|
||||
endif
|
||||
|
||||
# METIS library configuration
|
||||
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK)$(MFEM_USE_MUMPS),NONONO)
|
||||
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK),NONO)
|
||||
ifeq ($(MFEM_USE_METIS_5),NO)
|
||||
METIS_DIR = @MFEM_DIR@/../metis-4.0
|
||||
METIS_OPT =
|
||||
@@ -251,47 +194,43 @@ POSIX_CLOCKS_LIB = -lrt
|
||||
# SUNDIALS library configuration
|
||||
# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
|
||||
# and modify cmake variables for hypre for sundials
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
# SUNDIALS >= 6.4.0 requires C++14:
|
||||
ifeq ($(MFEM_USE_SUNDIALS),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_DIR)/lib64\
|
||||
$(XLINKER)-rpath,$(SUNDIALS_DIR)/lib\
|
||||
-L$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib\
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
|
||||
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
|
||||
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
|
||||
endif
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
SUNDIALS_LIB += -lsundials_nveccuda
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvechip
|
||||
endif
|
||||
# If SUNDIALS was built with KLU:
|
||||
# MFEM_USE_SUITESPARSE = YES
|
||||
|
||||
# MESQUITE library configuration
|
||||
MESQUITE_DIR = @MFEM_DIR@/../mesquite-2.99
|
||||
MESQUITE_OPT = -I$(MESQUITE_DIR)/include
|
||||
MESQUITE_LIB = -L$(MESQUITE_DIR)/lib -lmesquite
|
||||
|
||||
# SuiteSparse library configuration
|
||||
LIB_RT = $(if $(NOTMAC),-lrt,)
|
||||
SUITESPARSE_DIR = @MFEM_DIR@/../SuiteSparse
|
||||
SUITESPARSE_OPT = -I$(SUITESPARSE_DIR)/include
|
||||
SUITESPARSE_LIB = $(XLINKER)-rpath,$(SUITESPARSE_DIR)/lib\
|
||||
-L$(SUITESPARSE_DIR)/lib -lklu -lbtf -lumfpack -lcholmod -lcolamd -lamd -lcamd\
|
||||
-lccolamd -lsuitesparseconfig $(LIB_RT) $(METIS_LIB) $(LAPACK_LIB)
|
||||
SUITESPARSE_LIB = -Wl,-rpath,$(SUITESPARSE_DIR)/lib -L$(SUITESPARSE_DIR)/lib\
|
||||
-lklu -lbtf -lumfpack -lcholmod -lcolamd -lamd -lcamd -lccolamd\
|
||||
-lsuitesparseconfig $(LIB_RT) $(METIS_LIB) $(LAPACK_LIB)
|
||||
|
||||
# SuperLU library configuration
|
||||
ifeq ($(MFEM_USE_SUPERLU5),YES)
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
|
||||
-lsuperlu_dist_5.1.0
|
||||
SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib -lsuperlu_dist_5.1.0
|
||||
else
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
|
||||
-lsuperlu_dist $(LAPACK_LIB)
|
||||
SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64 -lsuperlu_dist -lblas
|
||||
endif
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
@@ -301,70 +240,32 @@ SCOTCH_OPT = -I$(SCOTCH_DIR)/include
|
||||
SCOTCH_LIB = -L$(SCOTCH_DIR)/lib -lptscotch -lptscotcherr -lscotch -lscotcherr\
|
||||
-lpthread
|
||||
|
||||
# SCALAPACK library configuration (required by STRUMPACK and MUMPS)
|
||||
# SCALAPACK library configuration (required by STRUMPACK)
|
||||
SCALAPACK_DIR = @MFEM_DIR@/../scalapack-2.0.2
|
||||
SCALAPACK_OPT = -I$(SCALAPACK_DIR)/SRC
|
||||
SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
|
||||
|
||||
# MPI Fortran library, needed e.g. by STRUMPACK or MUMPS
|
||||
# MPI Fortran library, needed e.g. by STRUMPACK
|
||||
# MPICH:
|
||||
MPI_FORTRAN_LIB = -lmpifort
|
||||
# OpenMPI:
|
||||
# MPI_FORTRAN_LIB = -lmpi_mpifh
|
||||
# Additional Fortran library:
|
||||
# Additional Fortan library:
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
|
||||
# STRUMPACK library configuration
|
||||
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
|
||||
ifeq ($(MFEM_USE_STRUMPACK),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
# If STRUMPACK was build with OpenMP support, the following may be need:
|
||||
# STRUMPACK_OPT += $(OPENMP_OPT)
|
||||
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
|
||||
$(SCOTCH_LIB) $(SCALAPACK_LIB)
|
||||
|
||||
# Ginkgo library configuration
|
||||
# Ginkgo library configuration (currently not needed)
|
||||
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
|
||||
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
|
||||
GINKGO_BUILD_TYPE=Release
|
||||
ifeq ($(MFEM_USE_GINKGO),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
GINKGO_OPT = -isystem $(GINKGO_DIR)/include
|
||||
GINKGO_LIB_DIR = $(sort $(dir $(wildcard\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
|
||||
GINKGO_LINK_LIB_DIR = $(GINKGO_DIR)$(subst $(GINKGO_SEARCH_DIR),,$(GINKGO_LIB_DIR))
|
||||
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.a\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.so\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dylib\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dll)))
|
||||
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
|
||||
ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
|
||||
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
|
||||
ifeq ($(GINKGO_BUILD_TYPE),Debug)
|
||||
ifneq (,$(ALL_GINKGO_LIBS_DEBUG))
|
||||
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_DEBUG))
|
||||
endif
|
||||
else
|
||||
endif
|
||||
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
|
||||
$(GINKGO_LINK)
|
||||
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_DIR)/lib -L$(GINKGO_DIR)/lib -lginkgo\
|
||||
-lginkgo_omp -lginkgo_cuda -lginkgo_reference
|
||||
|
||||
# AmgX library configuration
|
||||
AMGX_DIR = @MFEM_DIR@/../amgx
|
||||
@@ -379,8 +280,8 @@ GNUTLS_LIB = -lgnutls
|
||||
NETCDF_DIR = $(HOME)/local
|
||||
HDF5_DIR = $(HOME)/local
|
||||
NETCDF_OPT = -I$(NETCDF_DIR)/include -I$(HDF5_DIR)/include $(ZLIB_OPT)
|
||||
NETCDF_LIB = $(XLINKER)-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
|
||||
$(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
|
||||
NETCDF_LIB = -Wl,-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
|
||||
-Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
|
||||
-lnetcdf -lhdf5_hl -lhdf5 $(ZLIB_LIB)
|
||||
|
||||
# PETSc library configuration (version greater or equal to 3.8 or the dev branch)
|
||||
@@ -392,10 +293,9 @@ PETSC_INC_VAR = PETSC_CC_INCLUDES
|
||||
PETSC_LIB_VAR = PETSC_EXTERNAL_LIB_BASIC
|
||||
ifeq ($(PETSC_FOUND),YES)
|
||||
PETSC_OPT := $(shell sed -n "s/$(PETSC_INC_VAR) = *//p" $(PETSC_VARS))
|
||||
PETSC_DEP := $(shell sed -n "s/$(PETSC_LIB_VAR) = *//p" $(PETSC_VARS))
|
||||
PETSC_LIB = $(XLINKER)-rpath,$(abspath $(PETSC_DIR))/lib\
|
||||
-L$(abspath $(PETSC_DIR))/lib -lpetsc\
|
||||
$(subst $(CXX_XLINKER),$(XLINKER),$(PETSC_DEP))
|
||||
PETSC_LIB := $(shell sed -n "s/$(PETSC_LIB_VAR) = *//p" $(PETSC_VARS))
|
||||
PETSC_LIB := -Wl,-rpath,$(abspath $(PETSC_DIR))/lib\
|
||||
-L$(abspath $(PETSC_DIR))/lib -lpetsc $(PETSC_LIB)
|
||||
endif
|
||||
|
||||
SLEPC_DIR := $(MFEM_DIR)/../slepc
|
||||
@@ -407,31 +307,20 @@ ifeq ($(SLEPC_FOUND),YES)
|
||||
SLEPC_OPT := $(shell sed -n "s/$(SLEPC_INC_VAR) *= *//p" $(SLEPC_VARS))
|
||||
# Some additional external libraries might be defined in this file
|
||||
-include ${SLEPC_DIR}/${PETSC_ARCH}/lib/slepc/conf/slepcvariables
|
||||
SLEPC_DEP := $(shell sed -n "s/$(SLEPC_LIB_VAR) *= *//p" $(SLEPC_VARS))
|
||||
SLEPC_LIB = $(XLINKER)-rpath,$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib\
|
||||
-L$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib -lslepc\
|
||||
$(subst $(CXX_XLINKER),$(XLINKER),$(SLEPC_DEP))
|
||||
endif
|
||||
|
||||
ifeq ($(MFEM_USE_MOONOLITH),YES)
|
||||
include $(MOONOLITH_DIR)/config/moonolith-config.makefile
|
||||
MOONOLITH_LIB=$(MOONOLITH_LIBRARIES)
|
||||
SLEPC_LIB := $(shell sed -n "s/$(SLEPC_LIB_VAR) *= *//p" $(SLEPC_VARS))
|
||||
SLEPC_LIB := -Wl,-rpath,$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib\
|
||||
-L$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib -lslepc $(SLEPC_LIB)
|
||||
endif
|
||||
|
||||
# MPFR library configuration
|
||||
MPFR_OPT =
|
||||
MPFR_LIB = -lmpfr
|
||||
|
||||
# FMS and required libraries configuration
|
||||
FMS_DIR = $(MFEM_DIR)/../fms
|
||||
FMS_OPT = -I$(FMS_DIR)/include
|
||||
FMS_LIB = -Wl,-rpath,$(FMS_DIR)/lib -L$(FMS_DIR)/lib -lfms
|
||||
|
||||
# Conduit and required libraries configuration
|
||||
CONDUIT_DIR = @MFEM_DIR@/../conduit
|
||||
CONDUIT_OPT = -I$(CONDUIT_DIR)/include/conduit
|
||||
CONDUIT_LIB = \
|
||||
$(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-Wl,-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-lconduit -lconduit_relay -lconduit_blueprint -ldl
|
||||
|
||||
# Check if Conduit was built with hdf5 support, by looking
|
||||
@@ -439,7 +328,7 @@ CONDUIT_LIB = \
|
||||
CONDUIT_HDF5_HEADER=$(CONDUIT_DIR)/include/conduit/conduit_relay_hdf5.hpp
|
||||
ifneq (,$(wildcard $(CONDUIT_HDF5_HEADER)))
|
||||
CONDUIT_OPT += -I$(HDF5_DIR)/include
|
||||
CONDUIT_LIB += $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
CONDUIT_LIB += -Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-lhdf5 $(ZLIB_LIB)
|
||||
endif
|
||||
|
||||
@@ -449,9 +338,9 @@ SIDRE_DIR = @MFEM_DIR@/../axom
|
||||
SIDRE_OPT = -I$(SIDRE_DIR)/include -I$(CONDUIT_DIR)/include/conduit\
|
||||
-I$(HDF5_DIR)/include
|
||||
SIDRE_LIB = \
|
||||
$(XLINKER)-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
|
||||
$(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
$(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-Wl,-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
|
||||
-Wl,-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-laxom -lconduit -lconduit_relay -lconduit_blueprint -lhdf5 $(ZLIB_LIB) -ldl
|
||||
|
||||
# PUMI
|
||||
@@ -466,11 +355,6 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
|
||||
HIOP_OPT = -I$(HIOP_DIR)/include
|
||||
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
|
||||
|
||||
# CoDiPack
|
||||
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
|
||||
CODIPACK_OPT = -I$(CODIPACK_DIR)
|
||||
CODIPACK_LIB =
|
||||
|
||||
# GSLIB library
|
||||
GSLIB_DIR = @MFEM_DIR@/../gslib/build
|
||||
GSLIB_OPT = -I$(GSLIB_DIR)/include
|
||||
@@ -480,111 +364,41 @@ GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
|
||||
CUDA_OPT =
|
||||
CUDA_LIB = -lcusparse
|
||||
|
||||
# HIP library configuration
|
||||
# HIP library configuration (currently not needed)
|
||||
HIP_OPT =
|
||||
HIP_LIB = -L$(HIP_DIR)/lib $(XLINKER)-rpath,$(HIP_DIR)/lib -lhipsparse
|
||||
HIP_LIB =
|
||||
|
||||
# OCCA library configuration
|
||||
OCCA_DIR = @MFEM_DIR@/../occa
|
||||
OCCA_OPT = -I$(OCCA_DIR)/include
|
||||
OCCA_LIB = $(XLINKER)-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
|
||||
|
||||
# CALIPER library configuration
|
||||
CALIPER_DIR = @MFEM_DIR@/../caliper
|
||||
CALIPER_OPT = -I$(CALIPER_DIR)/include
|
||||
CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 $(XLINKER)-rpath,$(CALIPER_DIR)/lib -L$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib -lcaliper
|
||||
|
||||
ifdef ADIAK_DIR
|
||||
CALIPER_OPT += -I$(ADIAK_DIR)/include
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(ADIAK_DIR)/lib64 $(XLINKER)-rpath,$(ADIAK_DIR)/lib -L$(ADIAK_DIR)/lib64 -L$(ADIAK_DIR)/lib -ladiak
|
||||
endif
|
||||
ifdef GOTCHA_DIR
|
||||
CALIPER_OPT += -I$(GOTCHA_DIR)/include
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
|
||||
endif
|
||||
|
||||
# BLITZ library configuration
|
||||
BLITZ_DIR = @MFEM_DIR@/../blitz
|
||||
BLITZ_OPT = -I$(BLITZ_DIR)/include
|
||||
BLITZ_LIB = $(XLINKER)-rpath,$(BLITZ_DIR)/lib -L$(BLITZ_DIR)/lib -lblitz
|
||||
|
||||
# ALGOIM library configuration
|
||||
ALGOIM_DIR = @MFEM_DIR@/../algoim
|
||||
ALGOIM_OPT = -I$(ALGOIM_DIR)/src $(BLITZ_OPT)
|
||||
ALGOIM_LIB = $(BLITZ_LIB)
|
||||
|
||||
# BENCHMARK library configuration
|
||||
BENCHMARK_DIR = @MFEM_DIR@/../google-benchmark
|
||||
BENCHMARK_OPT = -I$(BENCHMARK_DIR)/include
|
||||
BENCHMARK_LIB = -L$(BENCHMARK_DIR)/lib -lbenchmark -lpthread
|
||||
|
||||
# libCEED library configuration
|
||||
CEED_DIR ?= @MFEM_DIR@/../libCEED
|
||||
CEED_OPT = -I$(CEED_DIR)/include
|
||||
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
|
||||
|
||||
# RAJA library configuration
|
||||
ifeq ($(MFEM_USE_RAJA),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
RAJA_DIR = @MFEM_DIR@/../raja
|
||||
RAJA_OPT = -I$(RAJA_DIR)/include
|
||||
ifdef CUB_DIR
|
||||
RAJA_OPT += -I$(CUB_DIR)
|
||||
endif
|
||||
|
||||
CAMP_LIB = -lcamp
|
||||
ifdef CAMP_DIR
|
||||
RAJA_OPT += -I$(CAMP_DIR)/include
|
||||
CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
|
||||
endif
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
|
||||
|
||||
# UMPIRE library configuration
|
||||
ifeq ($(MFEM_USE_UMPIRE),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
UMPIRE_DIR = @MFEM_DIR@/../umpire
|
||||
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
|
||||
UMPIRE_OPT = -I$(UMPIRE_DIR)/include
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
|
||||
|
||||
# MKL CPardiso library configuration
|
||||
MKL_CPARDISO_DIR ?=
|
||||
MKL_MPI_WRAPPER ?= mkl_blacs_mpich_lp64
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_CPARDISO_OPT = -I$(MKL_CPARDISO_DIR)/include
|
||||
MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# MKL Pardiso library configuration
|
||||
MKL_PARDISO_DIR ?=
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
|
||||
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# PARELAG library configuration
|
||||
PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
|
||||
# Enzyme configuration
|
||||
|
||||
# If you want to enable automatic differentiation at compile time, use the
|
||||
# options below, adapted to your configuration. To be more flexible, we
|
||||
# recommend using the Enzyme plugin during link time optimization. One option is
|
||||
# to add your options to the global compiler/linker flags like
|
||||
#
|
||||
# BASE_FLAGS += -flto
|
||||
# CXX_XLINKER += -fuse-ld=lld -Wl,--lto-legacy-pass-manager\
|
||||
# -Wl,-mllvm=-load=$(ENZYME_DIR)/LLDEnzyme-$(ENZYME_VERSION).so -Wl,
|
||||
#
|
||||
ENZYME_DIR ?= @MFEM_DIR@/../enzyme
|
||||
ENZYME_VERSION ?= 14
|
||||
ENZYME_OPT = -fno-experimental-new-pass-manager -Xclang -load -Xclang $(ENZYME_DIR)/ClangEnzyme-$(ENZYME_VERSION).so
|
||||
ENZYME_LIB = ""
|
||||
MKL_CPARDISO_LIB = -Wl,-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# If YES, enable some informational messages
|
||||
VERBOSE = NO
|
||||
|
||||
@@ -1,25 +0,0 @@
|
||||
FROM ghcr.io/mfem/mfem-ubuntu-base:latest as builder
|
||||
|
||||
# docker build -t ghcr.io/mfem/mfem-ubuntu .
|
||||
|
||||
COPY ./config/docker/spack.yaml /opt/mfem-env/spack.yaml
|
||||
RUN apt-get install -y python3 && \
|
||||
cd /opt/mfem-env && \
|
||||
. /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env activate . && \
|
||||
spack env view regenerate
|
||||
|
||||
FROM ubuntu:22.04
|
||||
|
||||
COPY --from=builder /opt/view /opt/view
|
||||
COPY --from=builder /opt/mfem-view /opt/mfem-view
|
||||
|
||||
RUN apt-get update && \
|
||||
apt-get install -y unzip gfortran && \
|
||||
apt-get install -y libcurl4-openssl-dev libssl-dev
|
||||
|
||||
ENV PATH=$PATH:/opt/mfem-view/bin
|
||||
ENV DEBIAN_FRONTEND=noninteractive
|
||||
|
||||
# The user will see the view on shell into the container
|
||||
WORKDIR /opt/mfem-view
|
||||
@@ -1,47 +0,0 @@
|
||||
FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
|
||||
|
||||
# docker build -f Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
|
||||
RUN apt-get update && \
|
||||
apt-get install -y unzip gfortran && \
|
||||
spack compiler find && \
|
||||
apt-get install -y libcurl4-openssl-dev libssl-dev
|
||||
|
||||
# /code is the working directory for code
|
||||
WORKDIR /code
|
||||
COPY . /code
|
||||
|
||||
# This is for a spack environment/view to install from there
|
||||
RUN mkdir -p /opt/mfem-env \
|
||||
&& (echo "spack:" \
|
||||
&& echo " view:" \
|
||||
&& echo " mfem:" \
|
||||
&& echo " root: /opt/mfem-view" \
|
||||
&& echo " link_type: copy" \
|
||||
&& echo " packages:" \
|
||||
&& echo " all:" \
|
||||
&& echo " target:" \
|
||||
&& echo " - x86_64_v3" \
|
||||
&& echo " config:" \
|
||||
&& echo " concretizer: clingo" \
|
||||
&& echo " compiler:" \
|
||||
&& echo " target:" \
|
||||
&& echo " - x86_64_v3" \
|
||||
&& echo " install_missing_compilers: true" \
|
||||
&& echo " concretization: together") > /opt/mfem-env/spack.yaml
|
||||
|
||||
RUN cd /opt/mfem-env && \
|
||||
. /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env activate . && \
|
||||
spack develop --path /code mfem@master+examples+miniapps && \
|
||||
spack add mfem@master+examples+miniapps && \
|
||||
spack install
|
||||
|
||||
# ensure mfem always on various paths
|
||||
RUN cd /opt/mfem-env && \
|
||||
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
|
||||
# Present the software install when we shell in
|
||||
# The view is at /opt/mfem-env/.spack-env/view
|
||||
WORKDIR /opt/software
|
||||
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
@@ -1,209 +0,0 @@
|
||||
# mfem Docker
|
||||
|
||||
We provide a [Dockerfile.base](Dockerfile.base) to build an ubuntu base image,
|
||||
and a [Dockerfile](Dockerfile) to build a smaller one with a multi-stage build.
|
||||
You can use this image for a demo of using mfem! 🎉️
|
||||
|
||||
Updated containers are built and deployed on merges to the main branch and releases.
|
||||
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
|
||||
|
||||
## Usage
|
||||
|
||||
We provide two containers, which you can either build or use directly from
|
||||
[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
|
||||
|
||||
- `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
|
||||
- `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
|
||||
|
||||
In the above, "ghcr.io" means "GitHub Container Registry" and
|
||||
is the [GitHub packages](https://github.com/features/packages) registry that supports
|
||||
Docker images and other OCI artifacts.
|
||||
|
||||
### Ubuntu
|
||||
|
||||
> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
|
||||
|
||||
Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
|
||||
so you don't need to build it. However, if you want to, you can do the following:
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
|
||||
```
|
||||
|
||||
Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
|
||||
below. Once you have built (or prefer to pull) you can shell into the container as follows:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu
|
||||
```
|
||||
|
||||
This smaller image has a view where everything is installed.
|
||||
|
||||
```bash
|
||||
$ ls
|
||||
bin etc include lib libexec sbin share var
|
||||
```
|
||||
|
||||
- Examples are in share/mfem/examples
|
||||
- Examples are in share/mfem/miniapps
|
||||
|
||||
Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
|
||||
|
||||
```bash
|
||||
$ ls include/ | grep mfem
|
||||
mfem
|
||||
mfem-performance.hpp
|
||||
mfem.hpp
|
||||
```
|
||||
|
||||
And yes, this is the working directory when you shell into the container!
|
||||
You can find the examples here:
|
||||
|
||||
|
||||
```bash
|
||||
cd share/mfem/examples
|
||||
```
|
||||
|
||||
Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
|
||||
we need:
|
||||
|
||||
```bash
|
||||
export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
|
||||
```
|
||||
|
||||
And then run:
|
||||
|
||||
```bash
|
||||
$ ./ex0
|
||||
Options used:
|
||||
--mesh ../data/star.mesh
|
||||
--order 1
|
||||
Number of unknowns: 101
|
||||
Iteration : 0 (B r, r) = 0.184259
|
||||
Iteration : 1 (B r, r) = 0.102754
|
||||
Iteration : 2 (B r, r) = 0.00558141
|
||||
Iteration : 3 (B r, r) = 1.5247e-05
|
||||
Iteration : 4 (B r, r) = 1.13807e-07
|
||||
Iteration : 5 (B r, r) = 6.27231e-09
|
||||
Iteration : 6 (B r, r) = 3.76268e-11
|
||||
Iteration : 7 (B r, r) = 6.07423e-13
|
||||
Iteration : 8 (B r, r) = 4.10615e-15
|
||||
Average reduction factor = 0.140201
|
||||
```
|
||||
|
||||
You can also explore the "mini apps," also in share/mfem, but under miniapps.
|
||||
|
||||
```bash
|
||||
# This is run from the examples directory
|
||||
$ cd ../miniapps
|
||||
```
|
||||
```bash
|
||||
$ ls
|
||||
CMakeLists.txt common meshing nurbs shifted toys
|
||||
adjoint electromagnetics mtop parelag solvers
|
||||
autodiff gslib navier performance tools
|
||||
```
|
||||
|
||||
And an example in "toys"
|
||||
|
||||
```bash
|
||||
cd toys
|
||||
```
|
||||
```bash
|
||||
$ ./automata -no-vis
|
||||
Options used:
|
||||
--num-steps 16
|
||||
--rule 90
|
||||
--no-visualization
|
||||
|
||||
Rule:
|
||||
111 110 101 100 011 010 001 000
|
||||
0 1 0 1 1 0 1 0
|
||||
|
||||
Applying rule...done.
|
||||
```
|
||||
|
||||
Have fun! As a reminder, this container is ideal for developing your own
|
||||
applications that might use mfem, or having a nice environment to test out
|
||||
examples.
|
||||
|
||||
|
||||
### Ubuntu Base
|
||||
|
||||
> Use this build for a development environment with spack and mfem
|
||||
|
||||
This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
|
||||
however you can build it locally too:
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
```
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
|
||||
```
|
||||
|
||||
Change directory to the mfem environment, setup spack, and activate the environment:
|
||||
|
||||
```bash
|
||||
source /opt/spack/share/spack/setup-env.sh
|
||||
cd /opt/mfem-env/
|
||||
spack env activate .
|
||||
```
|
||||
|
||||
Note that this environment is installing to the view at `/opt/view`. Since the environment
|
||||
knows to install mfem from `/code` this means that you could make changes in the container (or bind
|
||||
`/code` to your container) and then update spack:
|
||||
|
||||
```bash
|
||||
# Note that concretization takes a hot minute!
|
||||
$ spack install
|
||||
```
|
||||
|
||||
And if you want to load mfem:
|
||||
|
||||
```bash
|
||||
$ spack load mfem
|
||||
$ env | grep mfem
|
||||
```
|
||||
|
||||
In this development container, you can find the examples and miniapps alongside
|
||||
mfem under `/code`:
|
||||
|
||||
```bash
|
||||
cd /code/examples
|
||||
```
|
||||
```bash
|
||||
$ ./ex0
|
||||
```
|
||||
```console
|
||||
Options used:
|
||||
--mesh ../data/star.mesh
|
||||
--order 1
|
||||
Number of unknowns: 101
|
||||
Iteration : 0 (B r, r) = 0.184259
|
||||
Iteration : 1 (B r, r) = 0.102754
|
||||
Iteration : 2 (B r, r) = 0.00558141
|
||||
Iteration : 3 (B r, r) = 1.5247e-05
|
||||
Iteration : 4 (B r, r) = 1.13807e-07
|
||||
Iteration : 5 (B r, r) = 6.27231e-09
|
||||
Iteration : 6 (B r, r) = 3.76268e-11
|
||||
Iteration : 7 (B r, r) = 6.07423e-13
|
||||
Iteration : 8 (B r, r) = 4.10615e-15
|
||||
Average reduction factor = 0.140201
|
||||
```
|
||||
|
||||
This container is likely ideal for someone that wants to develop mfem itself.
|
||||
For other use cases, we recommend using the slimmer image. As an example,
|
||||
if you want to develop with your own code base (and mfem as is in the container)
|
||||
you can bind to somewhere else in the container (e.g., src)
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
|
||||
```
|
||||
|
||||
In the above, we can pretend your project is in the present working directory (PWD) and we are
|
||||
binding to source. You can then use the mfem in the container for development, and if you
|
||||
want to distribute your library or app in a container, you can use the mfem container as the base.
|
||||
@@ -1,11 +0,0 @@
|
||||
spack:
|
||||
specs: [mfem@master+examples+miniapps]
|
||||
view:
|
||||
mfem:
|
||||
root: /opt/mfem-view
|
||||
link_type: copy
|
||||
concretization: together
|
||||
develop:
|
||||
mfem:
|
||||
path: /code
|
||||
spec: mfem@master+examples+miniapps
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,33 +0,0 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dmumps_c.h"
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
// Macros to expand a macro as a string
|
||||
#define STR_EXPAND(s) #s
|
||||
#define STR(s) STR_EXPAND(s)
|
||||
|
||||
int main()
|
||||
{
|
||||
#ifdef MUMPS_VERSION
|
||||
const char *ptr = STR(MUMPS_VERSION);
|
||||
std::string s(ptr);
|
||||
s.erase(std::remove(s.begin(), s.end(), '"'), s.end());
|
||||
s.erase(std::remove(s.begin(), s.end(), '.'), s.end());
|
||||
std::cout << s << "\n";
|
||||
return 0;
|
||||
#else
|
||||
return -1;
|
||||
#endif
|
||||
}
|
||||
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Reference in New Issue
Block a user