Compare commits
14
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| Author | SHA1 | Date | |
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96f6ca5665 | ||
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ba3fc58806 | ||
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5fd3861229 |
@@ -1,6 +1,7 @@
|
||||
name: "Docker"
|
||||
|
||||
on:
|
||||
|
||||
# Always have a base image ready to go - this is a nightly build
|
||||
schedule:
|
||||
- cron: 0 3 * * *
|
||||
@@ -25,6 +26,7 @@ jobs:
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
|
||||
# Dockerfiles to build, a matrix supports future expanded builds
|
||||
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
|
||||
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
|
||||
@@ -32,20 +34,15 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: Build
|
||||
steps:
|
||||
- name: Run Actions Cleaner
|
||||
uses: easimon/maximize-build-space@v8
|
||||
with:
|
||||
overprovision-lvm: 'true'
|
||||
remove-dotnet: 'true'
|
||||
remove-android: 'true'
|
||||
remove-haskell: 'true'
|
||||
remove-codeql: 'true'
|
||||
remove-docker-images: 'true'
|
||||
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v3
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Make Space For Build
|
||||
run: |
|
||||
sudo rm -rf /usr/share/dotnet
|
||||
sudo rm -rf /opt/ghc
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Set Environment
|
||||
env:
|
||||
dockerfile: ${{ matrix.container[0] }}
|
||||
@@ -65,16 +65,13 @@ jobs:
|
||||
# - Add a new combination.
|
||||
# 'build-system: cmake' and 'hypre-target: int64'
|
||||
#
|
||||
# Note: we will gather coverage info for any non-debug run except the
|
||||
# note: we will gather coverage info for any non-debug run except the
|
||||
# CMake build.
|
||||
include:
|
||||
- target: dbg
|
||||
codecov: NO
|
||||
- target: opt
|
||||
codecov: YES
|
||||
- os: ubuntu-latest
|
||||
target: dbg
|
||||
config-opts: 'CPPFLAGS+=-Og'
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
@@ -101,189 +98,179 @@ jobs:
|
||||
runs-on: ${{ matrix.os }}
|
||||
|
||||
steps:
|
||||
# This external action allows to interrupt a workflow already running on
|
||||
# the same branch to save resources.
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
# This external action allows to interrupt a workflow already running on
|
||||
# the same branch to save resource
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
# Fix 'No space left on device' errors for Ubuntu builds.
|
||||
- name: Run Actions Cleaner
|
||||
if: matrix.os == 'ubuntu-latest'
|
||||
uses: easimon/maximize-build-space@v8
|
||||
with:
|
||||
overprovision-lvm: 'true'
|
||||
remove-android: 'true'
|
||||
# Checkout MFEM in "mfem" subdirectory. Final path:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
|
||||
# Checkout MFEM in "mfem" subdirectory. Final path:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
- name: get MPI (Linux)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
- name: get MPI (Linux)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
# Keep the following section in case we need it again in the future,
|
||||
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
|
||||
# - name: Set up Homebrew
|
||||
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
|
||||
# uses: Homebrew/actions/setup-homebrew@master
|
||||
|
||||
# Keep the following section in case we need it again in the future,
|
||||
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
|
||||
# - name: Set up Homebrew
|
||||
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
|
||||
# uses: Homebrew/actions/setup-homebrew@master
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
- name: get lcov (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install lcov
|
||||
|
||||
- name: get lcov (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install lcov
|
||||
- name: get MPI (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
uses: mpi4py/setup-mpi@v1.1.4
|
||||
|
||||
- name: get MPI (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
uses: mpi4py/setup-mpi@v1.1.4
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: make
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: make
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: cmake
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: cmake
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
- name: prepare vcpkg binary cache location (Windows)
|
||||
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
|
||||
run: |
|
||||
mkdir -p vcpkg_cache
|
||||
|
||||
- name: prepare vcpkg binary cache location (Windows)
|
||||
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
|
||||
run: |
|
||||
mkdir -p vcpkg_cache
|
||||
- name: install metis (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
run: |
|
||||
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
|
||||
|
||||
- name: install metis (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
run: |
|
||||
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.3
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
os: ${{ matrix.os }}
|
||||
target: ${{ matrix.target }}
|
||||
codecov: ${{ matrix.codecov }}
|
||||
mpi: ${{ matrix.mpi }}
|
||||
build-system: ${{ matrix.build-system }}
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
library-only: ${{ matrix.target == 'dbg' }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
os: ${{ matrix.os }}
|
||||
target: ${{ matrix.target }}
|
||||
codecov: ${{ matrix.codecov }}
|
||||
mpi: ${{ matrix.mpi }}
|
||||
build-system: ${{ matrix.build-system }}
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
|
||||
# Run checks (and only checks) on debug targets
|
||||
- name: checks
|
||||
if: matrix.build-system == 'make' && matrix.target == 'dbg'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make check
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
- name: checks
|
||||
if: matrix.build-system == 'make' && matrix.target == 'dbg'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make check
|
||||
# Note: 'tests' include the unit tests
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make test
|
||||
|
||||
# Note: 'tests' include the unit tests
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make test
|
||||
- name: cmake checks
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
|
||||
run: |
|
||||
CTEST_CONFIG="Debug"
|
||||
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
- name: cmake checks
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
|
||||
run: |
|
||||
CTEST_CONFIG="Debug"
|
||||
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
- name: cmake unit tests (Ubuntu)
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
- name: cmake unit tests (Ubuntu)
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
- name: cmake tests
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
- name: cmake tests
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && \
|
||||
ctest --output-on-failure -C ${CTEST_CONFIG} || \
|
||||
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.2
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
|
||||
@@ -13,10 +13,10 @@ name: "Static Analysis"
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: ["master", "next"]
|
||||
branches: [ "master", "next"]
|
||||
pull_request:
|
||||
# The branches below must be a subset of the branches above
|
||||
branches: ["master"]
|
||||
branches: [ "master" ]
|
||||
|
||||
jobs:
|
||||
analyze:
|
||||
@@ -35,35 +35,36 @@ jobs:
|
||||
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
# By default, queries listed here will override any specified in a config file.
|
||||
# Prefix the list here with "+" to use these queries and those in the config file.
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
# By default, queries listed here will override any specified in a config file.
|
||||
# Prefix the list here with "+" to use these queries and those in the config file.
|
||||
|
||||
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
|
||||
# If the Autobuild fails above, remove it and uncomment the following three lines.
|
||||
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
|
||||
# - run: |
|
||||
# echo "Run, Build Application using script"
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
# If the Autobuild fails above, remove it and uncomment the following three lines.
|
||||
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
# - run: |
|
||||
# echo "Run, Build Application using script"
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
|
||||
@@ -34,67 +34,67 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: int32
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: int32
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: mfem
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: mfem
|
||||
|
||||
- name: test (no clean)
|
||||
run: |
|
||||
cd mfem && make test-noclean
|
||||
- name: test (no clean)
|
||||
run: |
|
||||
cd mfem && make test-noclean
|
||||
|
||||
- name: gitignore
|
||||
run: |
|
||||
cd mfem/tests/scripts
|
||||
./runtest gitignore
|
||||
- name: gitignore
|
||||
run: |
|
||||
cd mfem/tests/scripts
|
||||
./runtest gitignore
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Sanitizer"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
jobs:
|
||||
Serial:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: MFEM Checkout
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
mpi: seq
|
||||
hypre-dir: unused-hypre-dir
|
||||
metis-dir: unused-metis-dir
|
||||
mfem-dir: mfem
|
||||
build-system: make
|
||||
library-only: false
|
||||
config-options:
|
||||
CXX="clang++-14"
|
||||
CXXFLAGS="-g -O1 -std=c++11
|
||||
-fsanitize=address
|
||||
-fno-omit-frame-pointer
|
||||
-fsanitize-address-use-after-scope"
|
||||
|
||||
- name: MFEM Info
|
||||
working-directory: mfem
|
||||
run: make info
|
||||
|
||||
- name: MFEM Sanitize
|
||||
working-directory: mfem
|
||||
run:
|
||||
ASAN_OPTIONS="detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1"
|
||||
make test
|
||||
@@ -33,49 +33,49 @@ jobs:
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
run: |
|
||||
./config/githooks/pre-push --copyright
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
run: |
|
||||
./config/githooks/pre-push --copyright
|
||||
|
||||
continue-on-error: true
|
||||
continue-on-error: true
|
||||
|
||||
- name: license check
|
||||
id: license
|
||||
run: |
|
||||
./config/githooks/pre-push --license
|
||||
continue-on-error: true
|
||||
- name: license check
|
||||
id: license
|
||||
run: |
|
||||
./config/githooks/pre-push --license
|
||||
continue-on-error: true
|
||||
|
||||
- name: release check
|
||||
id: release
|
||||
run: |
|
||||
./config/githooks/pre-push --release
|
||||
continue-on-error: true
|
||||
- name: release check
|
||||
id: release
|
||||
run: |
|
||||
./config/githooks/pre-push --release
|
||||
continue-on-error: true
|
||||
|
||||
- name: wrap-up
|
||||
if: |
|
||||
steps.copyright.outcome != 'success' ||
|
||||
steps.license.outcome != 'success' ||
|
||||
steps.release.outcome != 'success'
|
||||
run: |
|
||||
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
|
||||
echo "copyright check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
|
||||
echo "license check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
|
||||
echo "release check failed, unroll log for details"
|
||||
fi
|
||||
exit 1
|
||||
- name: wrap-up
|
||||
if: |
|
||||
steps.copyright.outcome != 'success' ||
|
||||
steps.license.outcome != 'success' ||
|
||||
steps.release.outcome != 'success'
|
||||
run: |
|
||||
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
|
||||
echo "copyright check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
|
||||
echo "license check failed, unroll log for details"
|
||||
fi
|
||||
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
|
||||
echo "release check failed, unroll log for details"
|
||||
fi
|
||||
exit 1
|
||||
|
||||
code-style:
|
||||
runs-on: ubuntu-latest
|
||||
@@ -83,16 +83,16 @@ jobs:
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
sudo apt-get install astyle
|
||||
- name: get astyle
|
||||
run: |
|
||||
sudo apt-get install astyle
|
||||
|
||||
- name: style check
|
||||
run: |
|
||||
./config/githooks/pre-push --style
|
||||
- name: style check
|
||||
run: |
|
||||
./config/githooks/pre-push --style
|
||||
|
||||
documentation:
|
||||
runs-on: ubuntu-latest
|
||||
@@ -100,22 +100,22 @@ jobs:
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
|
||||
- name: update doxygen config file
|
||||
run: |
|
||||
cd doc
|
||||
doxygen -u CodeDocumentation.conf.in
|
||||
- name: update doxygen config file
|
||||
run: |
|
||||
cd doc
|
||||
doxygen -u CodeDocumentation.conf.in
|
||||
|
||||
- name: build documentation
|
||||
run: |
|
||||
cd tests/scripts
|
||||
./runtest documentation
|
||||
- name: build documentation
|
||||
run: |
|
||||
cd tests/scripts
|
||||
./runtest documentation
|
||||
|
||||
branch-history:
|
||||
if: |
|
||||
@@ -125,16 +125,16 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: branch-history
|
||||
run: |
|
||||
# We override origin to make sure we point to the main repo.
|
||||
# This is to have consistent test results on PRs from forks.
|
||||
git remote remove origin
|
||||
git remote add origin https://github.com/mfem/mfem.git
|
||||
git checkout -b gh-actions-branch-history
|
||||
./config/githooks/pre-push --history
|
||||
- name: branch-history
|
||||
run: |
|
||||
# We override origin to make sure we point to the main repo.
|
||||
# This is to have consistent test results on PRs from forks.
|
||||
git remote remove origin
|
||||
git remote add origin https://github.com/mfem/mfem.git
|
||||
git checkout -b gh-actions-branch-history
|
||||
./config/githooks/pre-push --history
|
||||
|
||||
-38
@@ -29,7 +29,6 @@ CMakeFiles/
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.cmake
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
@@ -113,12 +112,6 @@ examples/ex25p-*.*
|
||||
examples/ex28_*
|
||||
examples/ex28p_*
|
||||
examples/flux.*
|
||||
examples/dsol.*
|
||||
examples/cond.*
|
||||
examples/cond_j.*
|
||||
examples/cond_mesh.*
|
||||
examples/port_mesh.*
|
||||
examples/port_mode.*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
@@ -213,16 +206,13 @@ miniapps/meshing/twist
|
||||
miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/fit-node-position
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/reflector
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/pmesh-fitting
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
miniapps/meshing/mesh-quality
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
@@ -266,16 +256,11 @@ miniapps/navier/*_output
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/nurbs_printfunc
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
miniapps/nurbs/sin-fit.mesh
|
||||
miniapps/nurbs/CurveInt
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
@@ -298,14 +283,9 @@ miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/plor-transfer
|
||||
miniapps/tools/get-values
|
||||
miniapps/tools/check-tmop-metric
|
||||
miniapps/tools/tmop-metric-magnitude
|
||||
miniapps/tools/nodal-transfer
|
||||
miniapps/tools/ParaView
|
||||
miniapps/tools/gridfunc_*
|
||||
miniapps/tools/mesh_*
|
||||
|
||||
miniapps/toys/automata
|
||||
miniapps/toys/life
|
||||
@@ -335,28 +315,12 @@ miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/hdiv-linear-solver/darcy
|
||||
miniapps/hdiv-linear-solver/grad_div
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/hooke/hooke
|
||||
|
||||
miniapps/dpg/diffusion
|
||||
miniapps/dpg/pdiffusion
|
||||
miniapps/dpg/convection-diffusion
|
||||
miniapps/dpg/pconvection-diffusion
|
||||
miniapps/dpg/acoustics
|
||||
miniapps/dpg/pacoustics
|
||||
miniapps/dpg/maxwell
|
||||
miniapps/dpg/pmaxwell
|
||||
miniapps/dpg/ParaView
|
||||
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
@@ -369,8 +333,6 @@ tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
tests/unit/parallel_in_serial.mesh
|
||||
tests/unit/parallel_in_serial.gf
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
|
||||
@@ -22,10 +22,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -55,10 +57,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -47,10 +47,12 @@ setup_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -35,11 +35,13 @@ setup:
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
|
||||
# try every 5 seconds; we may want to add a counter for the number of
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
@@ -67,10 +69,12 @@ setup:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -14,14 +14,14 @@ stages:
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
opt_mpi_cuda_xl_16_1_1_8:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
|
||||
@@ -51,8 +51,6 @@ cleanup:
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
|
||||
- make -C "${CI_PROJECT_DIR}" distclean
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
@@ -68,10 +66,12 @@ report_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -82,14 +82,12 @@ report_baseline:
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
|
||||
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
|
||||
fi
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
|
||||
@@ -27,39 +27,44 @@ allocate_resource:
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_10:
|
||||
debug_ser_gcc_4_9_3:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug~mpi"
|
||||
SPEC: "%gcc@4.9.3 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_10:
|
||||
debug_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug+mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_10:
|
||||
debug_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 ~mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10:
|
||||
opt_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1"
|
||||
SPEC: "%gcc@6.1.0 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_sundials:
|
||||
opt_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +sundials"
|
||||
SPEC: "%gcc@6.1.0"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_petsc:
|
||||
opt_par_gcc_6_1_0_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
|
||||
SPEC: "%gcc@6.1.0 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_pumi:
|
||||
opt_par_gcc_6_1_0_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
|
||||
+28
-15
@@ -42,34 +42,47 @@ fi
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
status=0
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
if [[ -s ${glob_err} ]]; then
|
||||
echo "ERROR during ${BASELINE_TEST} execution"
|
||||
echo "Here is the ${glob_err} file content"
|
||||
if [[ -s ${glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${glob_err} file content";
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
status=1
|
||||
fi
|
||||
if [[ -f ${base_patch} ]]; then
|
||||
exit 1;
|
||||
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${base_patch} or ${base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]; then
|
||||
elif [[ -f ${base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]; then
|
||||
if [[ -f ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
status=1
|
||||
# We create a .err file, because that's how we signal that there was a diff.
|
||||
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
|
||||
fi
|
||||
if [[ $status -eq 0 ]]; then
|
||||
|
||||
if [[ ! -s ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
exit $status
|
||||
|
||||
@@ -8,148 +8,11 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.6.1 (development)
|
||||
Version 4.5.3 (development)
|
||||
===========================
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Introduced support for higher order non conformal Nedelec elements on
|
||||
simplices in ParMesh.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
|
||||
|
||||
|
||||
Version 4.6, released on September 27, 2023
|
||||
===========================================
|
||||
|
||||
- MFEM is now available in Homebrew and can be installed on a Mac with just
|
||||
"brew install mfem". See https://formulae.brew.sh/formula/mfem.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added asymptotically-balanced TMOP compound metrics 90, 94, 328, 338. A new
|
||||
tool, tmop-metric-magnitude, can be used to track how metrics change under
|
||||
geometric perturbations. See miniapps/tools.
|
||||
|
||||
- Several NURBS meshing improvements:
|
||||
* Support for free connectivity of NURBS patches allowing for more complex
|
||||
patch configurations such as C-meshes.
|
||||
* New methods to set and get attributes on NURBS patches and patch boundaries.
|
||||
* The edge to knot map for NURBS meshes can be determined automatically. It is
|
||||
no longer needed to specify this in the NURBS mesh.
|
||||
* Added curve interpolation method for NURBS.
|
||||
* Added new small miniapp for printing of shape functions of a KnotVector
|
||||
* See miniapps/nurbs for example meshes and miniapps.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- SubMesh and ParSubMesh have been extended to support the transfer of
|
||||
Nedelec and Raviart-Thomas finite element spaces.
|
||||
|
||||
- Added support for partial assembly on NURBS patches, and NURBS-patch sparse
|
||||
matrix assembly. Patch matrix assembly includes the option to use reduced
|
||||
approximate integration rules, computed by the newly implemented non-negative
|
||||
least-squares (NNLS) solver.
|
||||
|
||||
- Support for parallel transfer of H1 fields using the low-order refined (LOR)
|
||||
transfer operators in L2ProjectionGridTransfer
|
||||
|
||||
- Added KDTree class for 2D/3D set of points, which is then utilized in the new
|
||||
KDTreeNodalProjection class to project a function defined on an arbitrary set
|
||||
of points onto an MFEM grid function. This functionality is demonstrated in
|
||||
the nodal-transfer miniapp. The current implementation is serial only. Further
|
||||
extensions can include search in arbitrary dimensional spaces.
|
||||
|
||||
- Added support for p-refined meshes in GSLIB-FindPoints.
|
||||
|
||||
- Device kernels can now access device-specific DOF and quadrature limits using
|
||||
the DofQuadLimits structure, allowing increased limits when executing on CPU.
|
||||
The limits for the runtime selected device can be accessed in host code using
|
||||
DeviceDofQuadLimits::Get(). The global constants MAX_D1D and MAX_Q1D are no
|
||||
longer available.
|
||||
|
||||
- Face restriction operators for Nedelec and Raviart-Thomas finite element
|
||||
spaces are now supported through the ConformingFaceRestriction class.
|
||||
|
||||
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Updated the MUMPS interface to support multiple right-hand sides, block
|
||||
low-rank compression, builds using 64-bit integers, and other improvements.
|
||||
|
||||
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
|
||||
The interface provides a serial (OpenMP shared memory) version of Pardiso for
|
||||
use with SparseMatrix. This complements the existing parallel (MPI distributed
|
||||
memory) version already available through the CPardiso MFEM integration.
|
||||
|
||||
- Added HIP support to the PETSc and SUNDIALS interfaces.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
|
||||
saddle-point solver methodology, suitable for high-order discretizations and
|
||||
for GPU acceleration. Examples illustrating the solution of Darcy and grad-div
|
||||
problems are included. See miniapps/hdiv-linear-solver.
|
||||
|
||||
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
|
||||
and parallel examples for diffusion, convection-diffusion, acoustics and
|
||||
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
|
||||
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
|
||||
integrators are added in support of DPG systems: TraceIntegrator,
|
||||
NormalTraceIntegrator and TangentTraceIntegrator. See miniapps/dpg.
|
||||
|
||||
- Added a new miniapp that implements the SPDE method for generating Gaussian
|
||||
random fields of Matern covariance. The resulting random field can be used,
|
||||
e.g., to model material uncertainties. See miniapps/spde.
|
||||
|
||||
- Added a new parallel LOR transfer miniapp, plor-transfer, which mirrors the
|
||||
functionality of the serial LOR transfer miniapp. See miniapps/tools.
|
||||
|
||||
- New serial miniapp, nodal-transfer, demonstrating the use of KDTree to map a
|
||||
parallel grid function to a different parallel partitioning of the same mesh.
|
||||
|
||||
- Added 3 additional TMOP miniapps in miniapps/meshing:
|
||||
* Mesh-Quality evaluates quality using size, skewness, and aspect-ratio
|
||||
computed from the Jacobian of the transformation.
|
||||
* Mesh-Fitting can be used for interface and boundary fitting to implicit
|
||||
domains defined using level-set functions.
|
||||
* Fit-Node-Position fits selected mesh nodes to specified positions, while
|
||||
maintaining overall mesh quality.
|
||||
|
||||
- Added 4 new example codes:
|
||||
* Example 34/34p solves a simple magnetostatic problem where source terms and
|
||||
boundary conditions are transferred with SubMesh objects.
|
||||
* Example 35p implements H1, H(curl) and H(div) variants of a damped harmonic
|
||||
oscillator with field transfer using SubMesh objects.
|
||||
* Example 36/36p demonstrates the solution of the obstacle problem with a new
|
||||
finite element method (proximal Galerkin).
|
||||
* Example 37/37p demonstrates topology optimization with MFEM.
|
||||
|
||||
- Added a random refinement option to the mesh-explorer miniapp to assist users
|
||||
in experimenting with nonconforming meshes.
|
||||
|
||||
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Improved lambda body debugging with the addition of mfem::forall functions.
|
||||
These functions can take the place of the MFEM_FORALL macros, which have been
|
||||
preserved for backwards compatibility.
|
||||
|
||||
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
|
||||
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
|
||||
|
||||
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
|
||||
in the fem/integ/ subdirectory.
|
||||
|
||||
- FiniteElementSpace::GetFE has been updated to abort instead of returning NULL for
|
||||
an empty partition.
|
||||
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Added new methods in the Mesh class to set and get attributes on NURBS patches
|
||||
and patch boundaries.
|
||||
|
||||
Version 4.5.2, released on March 23, 2023
|
||||
=========================================
|
||||
|
||||
+5
-15
@@ -57,7 +57,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.6.1)
|
||||
set(${PROJECT_NAME}_VERSION 4.5.3)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -82,7 +82,7 @@ if (MFEM_USE_CONDUIT OR
|
||||
# * find_package(PETSc REQUIRED)
|
||||
set(XSDK_ENABLE_C ON)
|
||||
endif()
|
||||
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
@@ -138,7 +138,7 @@ if (MFEM_USE_CUDA)
|
||||
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_FLAGS ${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS})
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
set(CUBLAS_FOUND TRUE)
|
||||
@@ -317,9 +317,6 @@ if (MFEM_USE_SUNDIALS)
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
if (MFEM_USE_HIP)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
@@ -336,7 +333,6 @@ endif()
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
@@ -470,18 +466,12 @@ if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
# MKL CPardiso
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MKL Pardiso
|
||||
if (MFEM_USE_MKL_PARDISO)
|
||||
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
@@ -531,8 +521,8 @@ find_package(Threads REQUIRED)
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
|
||||
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
|
||||
+1
-5
@@ -121,7 +121,6 @@ The MFEM source code has the following structure:
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── integ
|
||||
│ ├── lor
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
@@ -135,10 +134,8 @@ The MFEM source code has the following structure:
|
||||
│ ├── adjoint
|
||||
│ ├── autodiff
|
||||
│ ├── common
|
||||
│ ├── dpg
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
@@ -149,7 +146,6 @@ The MFEM source code has the following structure:
|
||||
│ ├── performance
|
||||
│ ├── shifted
|
||||
│ ├── solvers
|
||||
│ ├── spde
|
||||
│ ├── tools
|
||||
│ └── toys
|
||||
└── tests
|
||||
@@ -213,7 +209,7 @@ device/host memory manager.
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
|
||||
@@ -628,13 +628,9 @@ The specific libraries and their options are:
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
|
||||
for HIP.
|
||||
URL: http://computing.llnl.gov/projects/sundials/sundials-software
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0,
|
||||
SUNDIALS >= 5.4.0 for CUDA support, and
|
||||
SUNDIALS >= 5.7.0 for HIP support.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
@@ -699,15 +695,12 @@ The specific libraries and their options are:
|
||||
PETSc has been cloned on the same level as mfem and hypre:
|
||||
./configure --download-fblaslapack=yes --download-scalapack=yes \
|
||||
--download-mumps=yes --download-suitesparse=yes \
|
||||
--with-hypre-dir=../hypre/src/hypre \
|
||||
--with-hypre-dir=../hypre-2.10.0b/src/hypre \
|
||||
--with-shared-libraries=0
|
||||
When building PETSc with HIP, one may need to add a flag like -std=c2x to
|
||||
CFLAGS to allow proper parsing of the hipsparse header under C.
|
||||
URL: https://www.mcs.anl.gov/petsc
|
||||
Options: PETSC_OPT, PETSC_LIB.
|
||||
Versions: PETSc >= 3.8.0 (PETSc build without CUDA/HIP)
|
||||
Versions: PETSc >= 3.8.0 (PETSc build without CUDA)
|
||||
PETSc >= 3.15.0 (PETSc built with CUDA)
|
||||
PETSc >= 3.19.0 (PETSc built with HIP, older versions may work too)
|
||||
|
||||
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
|
||||
uses some of the PETSc options when compiled.
|
||||
|
||||
@@ -55,8 +55,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
|
||||
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
|
||||
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
|
||||
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
|
||||
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
|
||||
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
|
||||
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
|
||||
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
|
||||
+58
-66
@@ -80,102 +80,97 @@
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
#cmakedefine MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
#cmakedefine MFEM_USE_SUPERLU
|
||||
#cmakedefine MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
#cmakedefine MFEM_USE_MUMPS
|
||||
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
// Enable functionality based on the Ginkgo library
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// Enable MFEM functionality based on the AmgX library
|
||||
#cmakedefine MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable MFEM functionality based on the GnuTLS library
|
||||
#cmakedefine MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
#cmakedefine MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
#cmakedefine MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Enable MFEM functionality based on the NetCDF library
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable MFEM functionality based on the FMS library
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the Moonolith library
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HiOp library
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Build the HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
#cmakedefine MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable functionality based on the libCEED library.
|
||||
// Enable MFEM functionality based on the libCEED library
|
||||
#cmakedefine MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Algoim library.
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// Enable MFEM functionality based on the Umpire library
|
||||
#cmakedefine MFEM_USE_UMPIRE
|
||||
|
||||
// Enable IO functionality based on the ADIOS2 library.
|
||||
// Enable MFEM functionality based on the ADIOS2 library
|
||||
#cmakedefine MFEM_USE_ADIOS2
|
||||
|
||||
// Enable MFEM functionality based on the Caliper library
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable MFEM functionality based on the Algoim library
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
@@ -186,16 +181,13 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
#cmakedefine MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
#cmakedefine MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// Enable MFEM functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable Enzyme for AD
|
||||
|
||||
@@ -1,27 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MKL_PARDISO_FOUND
|
||||
# - MKL_PARDISO_LIBRARIES
|
||||
# - MKL_PARDISO_INCLUDE_DIRS
|
||||
|
||||
if(NOT MKL_LIBRARY_DIR)
|
||||
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
|
||||
set(MKL_LIBRARY_DIR "lib/intel64")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MKL_PARDISO MKL_PARDISO
|
||||
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
|
||||
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
|
||||
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
|
||||
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
|
||||
@@ -11,9 +11,8 @@
|
||||
|
||||
# Sets the following variables:
|
||||
# - MUMPS_FOUND
|
||||
# - MUMPS_LIBRARIES
|
||||
# - MUMPS_INCLUDE_DIRS
|
||||
# - MUMPS_VERSION
|
||||
# - MUMPS_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
${CMAKE_CURRENT_BINARY_DIR}/config
|
||||
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
|
||||
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
|
||||
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
|
||||
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
|
||||
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
|
||||
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
|
||||
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unable to determine MUMPS version.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
|
||||
ADD_COMPONENT NVector_Cuda
|
||||
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
|
||||
ADD_COMPONENT NVector_Hip
|
||||
"include" nvector/nvector_hip.h "lib" sundials_nvechip
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT NVector_Parallel
|
||||
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
|
||||
ADD_COMPONENT NVector_MPIPlusX
|
||||
|
||||
+16
-19
@@ -30,10 +30,10 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// The absolute path of the MFEM source prefix.
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix.
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
@@ -91,7 +91,7 @@
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
// #define MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
// Enable MFEM functionality based on the SuperLU library.
|
||||
// #define MFEM_USE_SUPERLU
|
||||
// #define MFEM_USE_SUPERLU5
|
||||
|
||||
@@ -102,40 +102,40 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// Enable MFEM features based on the Ginkgo library
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// #define MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable secure socket streams based on the GNUTLS library
|
||||
// #define MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
// Enable Sidre support
|
||||
// #define MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
// #define MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
// Enable FMS support
|
||||
// #define MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
// Enable Conduit support
|
||||
// #define MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files)
|
||||
// #define MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
@@ -144,7 +144,7 @@
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
// #define MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
// #define MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
@@ -186,13 +186,10 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
// #define MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
// #define MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
// #define MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
// #define MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
|
||||
@@ -57,7 +57,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
|
||||
MFEM_USE_SIMD = @MFEM_USE_SIMD@
|
||||
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
|
||||
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
|
||||
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
|
||||
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
|
||||
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
|
||||
+5
-10
@@ -60,7 +60,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
|
||||
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
|
||||
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
|
||||
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
|
||||
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
|
||||
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
@@ -135,18 +134,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
|
||||
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
|
||||
"Additional packages required by ParMETIS.")
|
||||
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
|
||||
"Path to the SuperLU_DIST library.")
|
||||
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
|
||||
"LAPACK" "BLAS" CACHE STRING
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
"Additional packages required by SuperLU_DIST.")
|
||||
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
|
||||
"Path to the MUMPS library.")
|
||||
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
|
||||
# Packages required by MUMPS, depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
|
||||
"Additional packages required by MUMPS.")
|
||||
# If the MPI package does not find all required Fortran libraries:
|
||||
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
@@ -229,8 +226,6 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
|
||||
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
|
||||
|
||||
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
|
||||
|
||||
+9
-35
@@ -160,7 +160,6 @@ MFEM_USE_UMPIRE = NO
|
||||
MFEM_USE_SIMD = NO
|
||||
MFEM_USE_ADIOS2 = NO
|
||||
MFEM_USE_MKL_CPARDISO = NO
|
||||
MFEM_USE_MKL_PARDISO = NO
|
||||
MFEM_USE_MOONOLITH = NO
|
||||
MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
@@ -267,9 +266,6 @@ endif
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
SUNDIALS_LIB += -lsundials_nveccuda
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvechip
|
||||
endif
|
||||
# If SUNDIALS was built with KLU:
|
||||
# MFEM_USE_SUITESPARSE = YES
|
||||
|
||||
@@ -288,10 +284,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
|
||||
-lsuperlu_dist_5.1.0
|
||||
else
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
|
||||
-lsuperlu_dist $(LAPACK_LIB)
|
||||
-lsuperlu_dist -lblas
|
||||
endif
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
@@ -315,7 +311,7 @@ MPI_FORTRAN_LIB = -lmpifort
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
@@ -331,30 +327,16 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
|
||||
$(SCOTCH_LIB) $(SCALAPACK_LIB)
|
||||
|
||||
# Ginkgo library configuration
|
||||
# Ginkgo library configuration (currently not needed)
|
||||
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
|
||||
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
|
||||
GINKGO_BUILD_TYPE=Release
|
||||
ifeq ($(MFEM_USE_GINKGO),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
GINKGO_OPT = -isystem $(GINKGO_DIR)/include
|
||||
GINKGO_LIB_DIR = $(sort $(dir $(wildcard\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
|
||||
GINKGO_LINK_LIB_DIR = $(GINKGO_DIR)$(subst $(GINKGO_SEARCH_DIR),,$(GINKGO_LIB_DIR))
|
||||
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.a\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.so\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dylib\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dll)))
|
||||
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
|
||||
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
|
||||
GINKGO_LIB_DIR = $(sort $(dir $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
|
||||
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*d.a $(GINKGO_DIR)/lib*/libginkgo*d.so $(GINKGO_DIR)/lib*/libginkgo*d.dylib $(GINKGO_DIR)/lib*/libginkgo*d.dll)))
|
||||
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
|
||||
ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
|
||||
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
|
||||
ifeq ($(GINKGO_BUILD_TYPE),Debug)
|
||||
@@ -363,8 +345,7 @@ ifeq ($(GINKGO_BUILD_TYPE),Debug)
|
||||
endif
|
||||
else
|
||||
endif
|
||||
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
|
||||
$(GINKGO_LINK)
|
||||
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LIB_DIR) -L$(GINKGO_LIB_DIR) $(GINKGO_LINK)
|
||||
|
||||
# AmgX library configuration
|
||||
AMGX_DIR = @MFEM_DIR@/../amgx
|
||||
@@ -503,6 +484,7 @@ ifdef GOTCHA_DIR
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
|
||||
endif
|
||||
|
||||
|
||||
# BLITZ library configuration
|
||||
BLITZ_DIR = @MFEM_DIR@/../blitz
|
||||
BLITZ_OPT = -I$(BLITZ_DIR)/include
|
||||
@@ -557,14 +539,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# MKL Pardiso library configuration
|
||||
MKL_PARDISO_DIR ?=
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
|
||||
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# PARELAG library configuration
|
||||
PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
|
||||
@@ -19,7 +19,9 @@ RUN apt-get update && \
|
||||
apt-get install -y libcurl4-openssl-dev libssl-dev
|
||||
|
||||
ENV PATH=$PATH:/opt/mfem-view/bin
|
||||
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
|
||||
ENV DEBIAN_FRONTEND=noninteractive
|
||||
|
||||
# The user will see the view on shell into the container
|
||||
WORKDIR /opt/mfem-view
|
||||
ENTRYPOINT ["/bin/bash"]
|
||||
|
||||
@@ -34,14 +34,14 @@ RUN cd /opt/mfem-env && \
|
||||
. /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env activate . && \
|
||||
spack develop --path /code mfem@master+examples+miniapps && \
|
||||
spack add mfem@master+examples+miniapps && \
|
||||
spack install
|
||||
spack add mfem@master+examples+miniapps # && \
|
||||
# spack install
|
||||
|
||||
# ensure mfem always on various paths
|
||||
RUN cd /opt/mfem-env && \
|
||||
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
#RUN cd /opt/mfem-env && \
|
||||
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
|
||||
# Present the software install when we shell in
|
||||
# The view is at /opt/mfem-env/.spack-env/view
|
||||
WORKDIR /opt/software
|
||||
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
#WORKDIR /opt/software
|
||||
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
|
||||
+46
-108
@@ -7,31 +7,21 @@ You can use this image for a demo of using mfem! 🎉️
|
||||
Updated containers are built and deployed on merges to the main branch and releases.
|
||||
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
|
||||
|
||||
## Usage
|
||||
### Usage
|
||||
|
||||
We provide two containers, which you can either build or use directly from
|
||||
[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
|
||||
|
||||
- `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
|
||||
- `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
|
||||
|
||||
In the above, "ghcr.io" means "GitHub Container Registry" and
|
||||
Here is how to build the container. Note that we build so it belongs to the same
|
||||
namespace as the repository here. "ghcr.io" means "GitHub Container Registry" and
|
||||
is the [GitHub packages](https://github.com/features/packages) registry that supports
|
||||
Docker images and other OCI artifacts.
|
||||
|
||||
### Ubuntu
|
||||
|
||||
> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
|
||||
|
||||
Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
|
||||
so you don't need to build it. However, if you want to, you can do the following:
|
||||
Docker images and other OCI artifacts. From the root of the repository:
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
|
||||
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
```
|
||||
|
||||
Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
|
||||
below. Once you have built (or prefer to pull) you can shell into the container as follows:
|
||||
### Shell Ubuntu
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu
|
||||
@@ -47,13 +37,39 @@ bin etc include lib libexec sbin share var
|
||||
- Examples are in share/mfem/examples
|
||||
- Examples are in share/mfem/miniapps
|
||||
|
||||
Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
|
||||
You can read more about interaction with these examples and miniapps below.
|
||||
|
||||
### Shell Ubuntu Base
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ ls include/ | grep mfem
|
||||
mfem
|
||||
mfem-performance.hpp
|
||||
mfem.hpp
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
|
||||
```
|
||||
|
||||
Off the bat, you can see mfem libraries are in your path so you can jump into development:
|
||||
|
||||
```bash
|
||||
env | grep mfem
|
||||
```
|
||||
```bash
|
||||
PKG_CONFIG_PATH=/opt/mfem-env/.spack-env/view/lib/pkgconfig:/opt/mfem-env/.spack-env/view/share/pkgconfig:/opt/mfem-env/.spack-env/view/lib64/pkgconfig
|
||||
PWD=/opt/mfem-env
|
||||
MANPATH=/opt/mfem-env/.spack-env/view/share/man:/opt/mfem-env/.spack-env/view/man:
|
||||
CMAKE_PREFIX_PATH=/opt/mfem-env/.spack-env/view
|
||||
SPACK_ENV=/opt/mfem-env
|
||||
ACLOCAL_PATH=/opt/mfem-env/.spack-env/view/share/aclocal
|
||||
LD_LIBRARY_PATH=/opt/mfem-env/.spack-env/view/lib:/opt/mfem-env/.spack-env/view/lib64
|
||||
PATH=/opt/mfem-env/.spack-env/view/bin:/opt/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
|
||||
```
|
||||
|
||||
#### Examples and MiniApps
|
||||
|
||||
If you want to develop a tool that _uses_ mfem, you can find the built libraries in:
|
||||
|
||||
```
|
||||
$ ls /opt/mfem-env/.spack-env/view/
|
||||
bin etc include lib libexec sbin share var
|
||||
```
|
||||
|
||||
And yes, this is the working directory when you shell into the container!
|
||||
@@ -63,16 +79,6 @@ You can find the examples here:
|
||||
```bash
|
||||
cd share/mfem/examples
|
||||
```
|
||||
|
||||
Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
|
||||
we need:
|
||||
|
||||
```bash
|
||||
export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
|
||||
```
|
||||
|
||||
And then run:
|
||||
|
||||
```bash
|
||||
$ ./ex0
|
||||
Options used:
|
||||
@@ -91,6 +97,7 @@ Number of unknowns: 101
|
||||
Average reduction factor = 0.140201
|
||||
```
|
||||
|
||||
Try running a few, and look at the associated .cpp file for the source code!
|
||||
You can also explore the "mini apps," also in share/mfem, but under miniapps.
|
||||
|
||||
```bash
|
||||
@@ -123,87 +130,18 @@ Rule:
|
||||
Applying rule...done.
|
||||
```
|
||||
|
||||
Have fun! As a reminder, this container is ideal for developing your own
|
||||
applications that might use mfem, or having a nice environment to test out
|
||||
examples.
|
||||
Have fun!
|
||||
|
||||
|
||||
### Ubuntu Base
|
||||
|
||||
> Use this build for a development environment with spack and mfem
|
||||
|
||||
This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
|
||||
however you can build it locally too:
|
||||
#### Your own App
|
||||
If you want to develop with your own code base
|
||||
(and mfem as is in the container) you can bind to somewhere else in the container (e.g., src)
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
```
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
|
||||
```
|
||||
|
||||
Change directory to the mfem environment, setup spack, and activate the environment:
|
||||
|
||||
```bash
|
||||
source /opt/spack/share/spack/setup-env.sh
|
||||
cd /opt/mfem-env/
|
||||
spack env activate .
|
||||
```
|
||||
|
||||
Note that this environment is installing to the view at `/opt/view`. Since the environment
|
||||
knows to install mfem from `/code` this means that you could make changes in the container (or bind
|
||||
`/code` to your container) and then update spack:
|
||||
|
||||
```bash
|
||||
# Note that concretization takes a hot minute!
|
||||
$ spack install
|
||||
```
|
||||
|
||||
And if you want to load mfem:
|
||||
|
||||
```bash
|
||||
$ spack load mfem
|
||||
$ env | grep mfem
|
||||
```
|
||||
|
||||
In this development container, you can find the examples and miniapps alongside
|
||||
mfem under `/code`:
|
||||
|
||||
```bash
|
||||
cd /code/examples
|
||||
```
|
||||
```bash
|
||||
$ ./ex0
|
||||
```
|
||||
```console
|
||||
Options used:
|
||||
--mesh ../data/star.mesh
|
||||
--order 1
|
||||
Number of unknowns: 101
|
||||
Iteration : 0 (B r, r) = 0.184259
|
||||
Iteration : 1 (B r, r) = 0.102754
|
||||
Iteration : 2 (B r, r) = 0.00558141
|
||||
Iteration : 3 (B r, r) = 1.5247e-05
|
||||
Iteration : 4 (B r, r) = 1.13807e-07
|
||||
Iteration : 5 (B r, r) = 6.27231e-09
|
||||
Iteration : 6 (B r, r) = 3.76268e-11
|
||||
Iteration : 7 (B r, r) = 6.07423e-13
|
||||
Iteration : 8 (B r, r) = 4.10615e-15
|
||||
Average reduction factor = 0.140201
|
||||
```
|
||||
|
||||
This container is likely ideal for someone that wants to develop mfem itself.
|
||||
For other use cases, we recommend using the slimmer image. As an example,
|
||||
if you want to develop with your own code base (and mfem as is in the container)
|
||||
you can bind to somewhere else in the container (e.g., src)
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
|
||||
```
|
||||
|
||||
In the above, we can pretend your project is in the present working directory (PWD) and we are
|
||||
binding to source. You can then use the mfem in the container for development, and if you
|
||||
want to distribute your library or app in a container, you can use the mfem container as the base.
|
||||
|
||||
|
||||
@@ -138,7 +138,7 @@ groups_parallel=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp pminimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
@@ -227,7 +227,7 @@ groups_all=(
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
|
||||
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
|
||||
@@ -1,37 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
1
|
||||
|
||||
elements
|
||||
4
|
||||
1 1 0 1
|
||||
1 1 1 2
|
||||
1 1 2 3
|
||||
1 1 3 4
|
||||
|
||||
boundary
|
||||
2
|
||||
1 0 0
|
||||
2 0 4
|
||||
|
||||
vertices
|
||||
5
|
||||
2
|
||||
0 0
|
||||
0.25 0.25
|
||||
0.50 0.50
|
||||
0.75 0.75
|
||||
1 1
|
||||
@@ -1,37 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
1
|
||||
|
||||
elements
|
||||
4
|
||||
1 1 0 1
|
||||
1 1 1 2
|
||||
1 1 2 3
|
||||
1 1 3 4
|
||||
|
||||
boundary
|
||||
2
|
||||
1 0 0
|
||||
2 0 4
|
||||
|
||||
vertices
|
||||
5
|
||||
3
|
||||
0 0 0
|
||||
0.25 0.25 0.25
|
||||
0.50 0.50 0.50
|
||||
0.75 0.75 0.75
|
||||
1 1 1
|
||||
@@ -1,48 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
6
|
||||
1 3 0 1 4 3
|
||||
1 3 2 3 6 5
|
||||
1 2 3 4 8
|
||||
1 2 4 7 8
|
||||
1 2 7 6 8
|
||||
1 2 6 3 8
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 0 1
|
||||
2 1 1 4
|
||||
3 1 4 7
|
||||
4 1 7 6
|
||||
5 1 6 5
|
||||
6 1 5 2
|
||||
7 1 2 3
|
||||
8 1 3 0
|
||||
|
||||
vertices
|
||||
9
|
||||
2
|
||||
0.5 0
|
||||
1 0
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
1 0.5
|
||||
0 1
|
||||
0.5 1
|
||||
1 1
|
||||
0.75 0.75
|
||||
@@ -1,44 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
3
|
||||
1 3 0 1 4 3
|
||||
1 3 2 3 6 5
|
||||
1 3 3 4 7 6
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 0 1
|
||||
2 1 1 4
|
||||
3 1 4 7
|
||||
4 1 7 6
|
||||
5 1 6 5
|
||||
6 1 5 2
|
||||
7 1 2 3
|
||||
8 1 3 0
|
||||
|
||||
vertices
|
||||
8
|
||||
2
|
||||
0.5 0
|
||||
1 0
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
1 0.5
|
||||
0 1
|
||||
0.5 1
|
||||
1 1
|
||||
@@ -1,322 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
# PYRAMID = 7
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
26
|
||||
1 2 1 18 0
|
||||
1 3 1 3 19 18
|
||||
2 3 3 6 20 19
|
||||
1 3 6 9 21 20
|
||||
2 3 9 12 22 21
|
||||
1 3 12 15 23 22
|
||||
2 2 23 15 24
|
||||
1 2 1 4 3
|
||||
2 3 4 7 6 3
|
||||
1 3 7 10 9 6
|
||||
2 3 10 13 12 9
|
||||
1 3 13 16 15 12
|
||||
2 3 16 25 24 15
|
||||
1 3 2 5 4 1
|
||||
1 3 5 8 7 4
|
||||
1 3 8 11 10 7
|
||||
1 3 11 14 13 10
|
||||
1 3 14 17 16 13
|
||||
1 2 25 16 17
|
||||
1 3 18 19 27 26
|
||||
2 3 19 20 28 27
|
||||
1 3 20 21 29 28
|
||||
2 3 21 22 30 29
|
||||
1 3 22 23 31 30
|
||||
2 3 23 24 32 31
|
||||
1 3 24 25 33 32
|
||||
|
||||
boundary
|
||||
18
|
||||
1 1 28 27
|
||||
2 1 30 29
|
||||
3 1 32 31
|
||||
4 1 0 1
|
||||
4 1 1 2
|
||||
4 1 2 5
|
||||
4 1 5 8
|
||||
4 1 8 11
|
||||
4 1 11 14
|
||||
4 1 14 17
|
||||
4 1 17 25
|
||||
4 1 25 33
|
||||
4 1 33 32
|
||||
4 1 31 30
|
||||
4 1 29 28
|
||||
4 1 27 26
|
||||
4 1 26 18
|
||||
4 1 18 0
|
||||
|
||||
vertices
|
||||
34
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: H1_2D_P3
|
||||
VDim: 2
|
||||
Ordering: 1
|
||||
|
||||
0 0
|
||||
0.53125 0
|
||||
1 0
|
||||
0.53125 0.09375
|
||||
0.5625 0.09375
|
||||
1 0.09375
|
||||
0.53125 0.21875
|
||||
0.6875 0.21875
|
||||
1 0.1875
|
||||
0.53125 0.25
|
||||
0.71875 0.25
|
||||
1 0.25
|
||||
0.53125 0.375
|
||||
0.84375 0.375
|
||||
1 0.34375
|
||||
0.53125 0.40625
|
||||
0.875 0.40625
|
||||
1 0.40625
|
||||
0 0.53125
|
||||
0.09375 0.53125
|
||||
0.21875 0.53125
|
||||
0.25 0.53125
|
||||
0.375 0.53125
|
||||
0.40625 0.53125
|
||||
0.53125 0.53125
|
||||
1 0.53125
|
||||
0 1
|
||||
0.09375 1
|
||||
0.21875 1
|
||||
0.25 1
|
||||
0.375 1
|
||||
0.40625 1
|
||||
0.53125 1
|
||||
1 1
|
||||
|
||||
0.33175106835972 0.094168845750364
|
||||
0.094168845750364 0.33175106835972
|
||||
-5.1759634627347e-17 0.14683388869532
|
||||
6.5255471622478e-17 0.38441611130468
|
||||
0.14683388869532 6.0713766400335e-17
|
||||
0.38441611130468 8.2458945395444e-19
|
||||
0.53125 0.025911862710939
|
||||
0.53125 0.067838137289061
|
||||
0.34721731046049 0.13433915461926
|
||||
0.13433915461926 0.34721731046049
|
||||
0.025911862710939 0.53125
|
||||
0.067838137289061 0.53125
|
||||
0.53125 0.12829915028125
|
||||
0.53125 0.18420084971875
|
||||
0.39979807890035 0.24774225329947
|
||||
0.24774225329947 0.39979807890035
|
||||
0.12829915028125 0.53125
|
||||
0.18420084971875 0.53125
|
||||
0.53125 0.22738728757031
|
||||
0.53125 0.24136271242969
|
||||
0.41294327101031 0.27609302796952
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0.34045084971875 0.53125
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0.38363728757031 0.53125
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0.44079915028125 0.53125
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||||
0.49670084971875 0.53125
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0.55386271242969 0.09375
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0.64431356214843 0.21875
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0.68342202598438 0.09375
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0.87907797401562 0.09375
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0.6608093135547 0
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0.8704406864453 0
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0.91362712429687 0.19613728757031
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0.79648558813282 0.25
|
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0.92226441186718 0.25
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1 0.27591186271094
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||||
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0.95681356214843 0.35238728757031
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0.09375 0.8704406864453
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||||
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||||
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||||
0.21875 0.6608093135547
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0.21875 0.8704406864453
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0.12829915028125 1
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||||
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0.25 0.8704406864453
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0.22738728757031 1
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0.24136271242969 1
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||||
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||||
0.375 0.8704406864453
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||||
0.28454915028125 1
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0.34045084971875 1
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||||
0.40625 0.6608093135547
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0.40625 0.8704406864453
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||||
0.38363728757031 1
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||||
0.39761271242969 1
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||||
0.53125 0.6608093135547
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||||
0.53125 0.8704406864453
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||||
0.44079915028125 1
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||||
0.49670084971875 1
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1 0.8704406864453
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0.8704406864453 1
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||||
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||||
0.10629113008478 0.3364183509774
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0.12590539815918 0.3439701728879
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||||
0.36175027742635 0.16568300020856
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||||
0.38526511193449 0.21639840771017
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||||
0.16568300020856 0.36175027742635
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||||
0.21639840771017 0.38526511193449
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||||
0.40343132064181 0.2555782146968
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||||
0.40931002926885 0.2682570665722
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||||
0.2555782146968 0.40343132064181
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||||
0.2682570665722 0.40931002926885
|
||||
0.42747623797617 0.30743687355882
|
||||
0.45099107248431 0.35815228106044
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||||
0.30743687355882 0.42747623797617
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||||
0.35815228106044 0.45099107248431
|
||||
0.46915728119164 0.39733208804706
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||||
0.47503598981867 0.41001093992246
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||||
0.39733208804706 0.46915728119164
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||||
0.41001093992246 0.47503598981867
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||||
0.47232443490112 0.47232443490112
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||||
0.54166666666667 0.0625
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||||
0.57886271242969 0.12829915028125
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||||
0.61931356214843 0.18420084971875
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||||
0.54943643785157 0.12829915028125
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||||
0.56488728757031 0.18420084971875
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||||
0.65056356214843 0.22738728757031
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||||
0.66067627457812 0.24136271242969
|
||||
0.57682372542188 0.22738728757031
|
||||
0.58068643785157 0.24136271242969
|
||||
0.69192627457812 0.28454915028125
|
||||
0.73237712429687 0.34045084971875
|
||||
0.59262287570313 0.28454915028125
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||||
0.60807372542188 0.34045084971875
|
||||
0.76362712429687 0.38363728757031
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||||
0.77373983672656 0.39761271242969
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||||
0.62001016327344 0.38363728757031
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||||
0.62387287570313 0.39761271242969
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0.87282797401562 0.025911862710939
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0.8766906864453 0.067838137289061
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0.6670593135547 0.025911862710939
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0.67717202598438 0.067838137289061
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||||
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||||
0.91987712429687 0.23511271242969
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||||
0.78012287570313 0.22113728757031
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||||
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||||
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||||
0.95920084971875 0.36727457514063
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0.96306356214843 0.39136271242969
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0.89318643785157 0.37738728757031
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0.90329915028125 0.39522542485937
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0.95833333333333 0.44791666666667
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||||
0.067838137289061 0.6608093135547
|
||||
0.025911862710939 0.8704406864453
|
||||
0.067838137289061 0.8704406864453
|
||||
0.12829915028125 0.6608093135547
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0.18420084971875 0.6608093135547
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0.12829915028125 0.8704406864453
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||||
0.18420084971875 0.8704406864453
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||||
0.22738728757031 0.6608093135547
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||||
0.24136271242969 0.6608093135547
|
||||
0.22738728757031 0.8704406864453
|
||||
0.24136271242969 0.8704406864453
|
||||
0.28454915028125 0.6608093135547
|
||||
0.34045084971875 0.6608093135547
|
||||
0.28454915028125 0.8704406864453
|
||||
0.34045084971875 0.8704406864453
|
||||
0.38363728757031 0.6608093135547
|
||||
0.39761271242969 0.6608093135547
|
||||
0.38363728757031 0.8704406864453
|
||||
0.39761271242969 0.8704406864453
|
||||
0.44079915028125 0.6608093135547
|
||||
0.49670084971875 0.6608093135547
|
||||
0.44079915028125 0.8704406864453
|
||||
0.49670084971875 0.8704406864453
|
||||
0.6608093135547 0.6608093135547
|
||||
0.8704406864453 0.6608093135547
|
||||
0.6608093135547 0.8704406864453
|
||||
0.8704406864453 0.8704406864453
|
||||
@@ -1,46 +0,0 @@
|
||||
MFEM NURBS mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# SEGMENT = 1
|
||||
# SQUARE = 3
|
||||
# CUBE = 5
|
||||
#
|
||||
|
||||
dimension
|
||||
1
|
||||
|
||||
elements
|
||||
1
|
||||
1 1 0 1
|
||||
|
||||
boundary
|
||||
2
|
||||
1 0 0
|
||||
2 0 1
|
||||
|
||||
edges
|
||||
1
|
||||
0 0 1
|
||||
|
||||
vertices
|
||||
2
|
||||
|
||||
knotvectors
|
||||
1
|
||||
1 2 0 0 1 1
|
||||
|
||||
weights
|
||||
1
|
||||
1
|
||||
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: NURBS1
|
||||
VDim: 1
|
||||
Ordering: 1
|
||||
|
||||
0
|
||||
1
|
||||
|
||||
|
||||
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v4.6.1
|
||||
PROJECT_NUMBER = v4.5.3
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
@@ -795,7 +795,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/common \
|
||||
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
|
||||
@MFEM_SOURCE_DIR@/miniapps/gslib \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/kernels \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/materials \
|
||||
@@ -811,10 +810,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/shifted \
|
||||
@MFEM_SOURCE_DIR@/miniapps/solvers \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tools \
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys \
|
||||
@MFEM_SOURCE_DIR@/miniapps/spde \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg/util
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys
|
||||
|
||||
# This tag can be used to specify the character encoding of the source files
|
||||
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
|
||||
|
||||
@@ -39,7 +39,7 @@ namespace mfem {
|
||||
* - Device
|
||||
* - Memory
|
||||
* - MemoryManager
|
||||
* - mfem::forall functions in forall.hpp
|
||||
* - MFEM_FORALL macro in forall.hpp
|
||||
*
|
||||
* <H3>Example codes</H3>
|
||||
* - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
|
||||
@@ -105,13 +105,6 @@ namespace mfem {
|
||||
* - <a class="el" href="ex32p_8cpp_source.html">Example 32p</a>: parallel anisotropic Maxwell eigensolver
|
||||
* - <a class="el" href="ex33_8cpp_source.html">Example 33</a>: nodal H1 FEM for the fractional Laplacian problem
|
||||
* - <a class="el" href="ex33p_8cpp_source.html">Example 33p</a>: parallel nodal H1 FEM for the fractional Laplacian problem
|
||||
* - <a class="el" href="ex34_8cpp_source.html">Example 34</a>: multi-domain magnetostatics
|
||||
* - <a class="el" href="ex34p_8cpp_source.html">Example 34p</a>: parallel multi-domain magnetostatics
|
||||
* - <a class="el" href="ex35p_8cpp_source.html">Example 35p</a>: parallel multi-domain damped harmonic oscillators
|
||||
* - <a class="el" href="ex36_8cpp_source.html">Example 36</a>: Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex36p_8cpp_source.html">Example 36p</a>: parallel Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex37_8cpp_source.html">Example 37</a>: Topology optimization
|
||||
* - <a class="el" href="ex37p_8cpp_source.html">Example 37p</a>: parallel topology optimization
|
||||
*
|
||||
* <H4>AmgX Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -193,7 +186,6 @@ namespace mfem {
|
||||
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
|
||||
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
|
||||
* - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
|
||||
* - <a class="el" href="mesh-quality_8cpp_source.html">Mesh Quality</a>: visualize and check mesh quality
|
||||
* - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
|
||||
* - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
|
||||
* - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
|
||||
@@ -206,15 +198,12 @@ namespace mfem {
|
||||
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
|
||||
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
|
||||
* - <a class="el" href="extrapolate_8cpp_source.html">Extrapolation</a>: PDE-based extrapolation of finite element functions
|
||||
* - <a class="el" href="block-solvers_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
|
||||
* - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
|
||||
* - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
*
|
||||
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
|
||||
*/
|
||||
|
||||
+2
-21
@@ -40,9 +40,6 @@ list(APPEND ALL_EXE_SRCS
|
||||
ex30.cpp
|
||||
ex31.cpp
|
||||
ex33.cpp
|
||||
ex34.cpp
|
||||
ex36.cpp
|
||||
ex37.cpp
|
||||
)
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -80,10 +77,6 @@ if (MFEM_USE_MPI)
|
||||
ex31p.cpp
|
||||
ex32p.cpp
|
||||
ex33p.cpp
|
||||
ex34p.cpp
|
||||
ex35p.cpp
|
||||
ex36p.cpp
|
||||
ex37p.cpp
|
||||
)
|
||||
endif()
|
||||
|
||||
@@ -109,8 +102,6 @@ if (MFEM_ENABLE_TESTING)
|
||||
list(APPEND THIS_TEST_OPTIONS "-e" "1")
|
||||
elseif(${TEST_NAME} MATCHES "ex27p*")
|
||||
list(APPEND THIS_TEST_OPTIONS "-dg")
|
||||
elseif(${TEST_NAME} MATCHES "ex37p*")
|
||||
list(APPEND THIS_TEST_OPTIONS "-mi" "3")
|
||||
endif()
|
||||
|
||||
if (NOT (${TEST_NAME} MATCHES ".*p$"))
|
||||
@@ -128,10 +119,9 @@ if (MFEM_ENABLE_TESTING)
|
||||
# Add CUDA/HIP tests.
|
||||
set(DEVICE_EXAMPLES
|
||||
# serial examples with device support:
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
|
||||
# parallel examples with device support:
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p
|
||||
ex34p ex35p)
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p)
|
||||
set(MFEM_TEST_DEVICE)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_TEST_DEVICE "cuda")
|
||||
@@ -171,15 +161,6 @@ if (MFEM_ENABLE_TESTING)
|
||||
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
|
||||
# If MUMPS is enabled, add a test run that uses it.
|
||||
if (MFEM_USE_MUMPS)
|
||||
add_test(NAME ex25p_mumps_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Include the examples/amgx directory if AmgX is enabled
|
||||
|
||||
+1
-1
@@ -22,7 +22,7 @@ using namespace mfem;
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command line options.
|
||||
string mesh_file = "../data/star.mesh";
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
|
||||
+1
-1
@@ -26,7 +26,7 @@ int main(int argc, char *argv[])
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command line options.
|
||||
string mesh_file = "../data/star.mesh";
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
|
||||
@@ -5,7 +5,6 @@
|
||||
// Sample runs: mpirun -np 4 ex13p -m ../data/star.mesh
|
||||
// mpirun -np 4 ex13p -m ../data/square-disc.mesh -o 2 -n 4
|
||||
// mpirun -np 4 ex13p -m ../data/beam-tet.mesh
|
||||
// mpirun -np 4 ex13p -m ../data/beam-tet.mesh -nc -o 2 -rs 1
|
||||
// mpirun -np 4 ex13p -m ../data/beam-hex.mesh
|
||||
// mpirun -np 4 ex13p -m ../data/escher.mesh
|
||||
// mpirun -np 4 ex13p -m ../data/fichera.mesh
|
||||
@@ -55,7 +54,6 @@ int main(int argc, char *argv[])
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
int nev = 5;
|
||||
bool nc = false;
|
||||
bool visualization = 1;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
@@ -71,9 +69,6 @@ int main(int argc, char *argv[])
|
||||
" isoparametric space.");
|
||||
args.AddOption(&nev, "-n", "--num-eigs",
|
||||
"Number of desired eigenmodes.");
|
||||
args.AddOption(&nc, "-nc", "--non-conforming", "-c",
|
||||
"--conforming",
|
||||
"Mark the mesh as nonconforming before partitioning.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
@@ -103,10 +98,6 @@ int main(int argc, char *argv[])
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
if (nc)
|
||||
{
|
||||
mesh->EnsureNCMesh(true);
|
||||
}
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement (2 by default, or
|
||||
|
||||
@@ -13,7 +13,6 @@
|
||||
// mpirun -np 4 ex15p -m ../data/square-disc-nurbs.mesh
|
||||
// mpirun -np 4 ex15p -m ../data/disc-nurbs.mesh
|
||||
// mpirun -np 4 ex15p -m ../data/fichera.mesh -tf 0.5
|
||||
// mpirun -np 4 ex15p -m ../data/fichera-mixed.mesh -tf 0.5
|
||||
// mpirun -np 4 ex15p -m ../data/ball-nurbs.mesh -tf 0.5
|
||||
// mpirun -np 4 ex15p -m ../data/mobius-strip.mesh
|
||||
// mpirun -np 4 ex15p -m ../data/amr-quad.mesh
|
||||
|
||||
+7
-13
@@ -246,23 +246,17 @@ int main(int argc, char *argv[])
|
||||
e_var /= (nsteps + 1);
|
||||
double e_sd = sqrt(e_var);
|
||||
|
||||
double e_loc_stats[2];
|
||||
double *e_stats = (myid == 0) ? new double[2 * num_procs] : (double*)NULL;
|
||||
|
||||
e_loc_stats[0] = e_mean;
|
||||
e_loc_stats[1] = e_sd;
|
||||
MPI_Gather(e_loc_stats, 2, MPI_DOUBLE, e_stats, 2, MPI_DOUBLE, 0, comm);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << endl << "Mean and standard deviation of the energy "
|
||||
<< "for different initial conditions" << endl;
|
||||
for (int i = 0; i < num_procs; i++)
|
||||
cout << endl << "Mean and standard deviation of the energy" << endl;
|
||||
}
|
||||
for (int i = 0; i < num_procs; i++)
|
||||
{
|
||||
if (myid == i)
|
||||
{
|
||||
cout << i << ": " << e_stats[2 * i + 0]
|
||||
<< "\t" << e_stats[2 * i + 1] << endl;
|
||||
cout << myid << ": " << e_mean << "\t" << e_sd << endl;
|
||||
}
|
||||
delete [] e_stats;
|
||||
MPI_Barrier(comm);
|
||||
}
|
||||
|
||||
// 9. Finalize the GnuPlot output
|
||||
|
||||
+36
-33
@@ -32,7 +32,6 @@
|
||||
// We recommend viewing Example 22 before viewing this example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <memory>
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
@@ -45,7 +44,7 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Class for setting up a simple Cartesian PML region
|
||||
class PML
|
||||
class CartesianPML
|
||||
{
|
||||
private:
|
||||
Mesh *mesh;
|
||||
@@ -70,7 +69,7 @@ private:
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PML(Mesh *mesh_,Array2D<double> length_);
|
||||
CartesianPML(Mesh *mesh_,Array2D<double> length_);
|
||||
|
||||
// Return Computational Domain Boundary
|
||||
Array2D<double> GetCompDomainBdr() {return comp_dom_bdr;}
|
||||
@@ -92,12 +91,12 @@ public:
|
||||
class PMLDiagMatrixCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
PML * pml = nullptr;
|
||||
void (*Function)(const Vector &, PML *, Vector &);
|
||||
CartesianPML * pml = nullptr;
|
||||
void (*Function)(const Vector &, CartesianPML *, Vector &);
|
||||
public:
|
||||
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, PML *,
|
||||
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
|
||||
Vector &),
|
||||
PML * pml_)
|
||||
CartesianPML * pml_)
|
||||
: VectorCoefficient(dim), pml(pml_), Function(F)
|
||||
{}
|
||||
|
||||
@@ -126,13 +125,13 @@ void source(const Vector &x, Vector & f);
|
||||
|
||||
// Functions for computing the necessary coefficients after PML stretching.
|
||||
// J is the Jacobian matrix of the stretching function
|
||||
void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D);
|
||||
|
||||
Array2D<double> comp_domain_bdr;
|
||||
Array2D<double> domain_bdr;
|
||||
@@ -268,7 +267,7 @@ int main(int argc, char *argv[])
|
||||
length = 0.25;
|
||||
break;
|
||||
}
|
||||
PML * pml = new PML(mesh,length);
|
||||
CartesianPML * pml = new CartesianPML(mesh,length);
|
||||
comp_domain_bdr = pml->GetCompDomainBdr();
|
||||
domain_bdr = pml->GetDomainBdr();
|
||||
|
||||
@@ -468,14 +467,16 @@ int main(int argc, char *argv[])
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
std::unique_ptr<Operator> pc_r;
|
||||
std::unique_ptr<Operator> pc_i;
|
||||
Operator *pc_r = nullptr;
|
||||
Operator *pc_i = nullptr;
|
||||
double s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
pc_r.reset(new OperatorJacobiSmoother(prec, ess_tdof_list));
|
||||
pc_i.reset(new ScaledOperator(pc_r.get(), s));
|
||||
OperatorJacobiSmoother *d00 = new OperatorJacobiSmoother(prec, ess_tdof_list);
|
||||
ScaledOperator *d11 = new ScaledOperator(d00, s);
|
||||
pc_r = d00;
|
||||
pc_i = d11;
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -484,13 +485,15 @@ int main(int argc, char *argv[])
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// Gauss-Seidel Smoother
|
||||
pc_r.reset(new GSSmoother(*PCOpAh.As<SparseMatrix>()));
|
||||
pc_i.reset(new ScaledOperator(pc_r.get(), s));
|
||||
GSSmoother *gs00 = new GSSmoother(*PCOpAh.As<SparseMatrix>());
|
||||
ScaledOperator *gs11 = new ScaledOperator(gs00, s);
|
||||
pc_r = gs00;
|
||||
pc_i = gs11;
|
||||
}
|
||||
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, pc_r.get());
|
||||
BlockDP.SetDiagonalBlock(1, pc_i.get());
|
||||
BlockDP.SetDiagonalBlock(0, pc_r);
|
||||
BlockDP.SetDiagonalBlock(1, pc_i);
|
||||
|
||||
GMRESSolver gmres;
|
||||
gmres.SetPrintLevel(1);
|
||||
@@ -804,7 +807,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector &D)
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -821,7 +824,7 @@ void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector &D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector &D)
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -838,7 +841,7 @@ void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector &D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector &D)
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -855,7 +858,7 @@ void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector &D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector &D)
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -880,7 +883,7 @@ void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector &D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector &D)
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -904,7 +907,7 @@ void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector &D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector &D)
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -928,14 +931,14 @@ void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector &D)
|
||||
}
|
||||
}
|
||||
|
||||
PML::PML(Mesh *mesh_, Array2D<double> length_)
|
||||
CartesianPML::CartesianPML(Mesh *mesh_, Array2D<double> length_)
|
||||
: mesh(mesh_), length(length_)
|
||||
{
|
||||
dim = mesh->Dimension();
|
||||
SetBoundaries();
|
||||
}
|
||||
|
||||
void PML::SetBoundaries()
|
||||
void CartesianPML::SetBoundaries()
|
||||
{
|
||||
comp_dom_bdr.SetSize(dim, 2);
|
||||
dom_bdr.SetSize(dim, 2);
|
||||
@@ -950,7 +953,7 @@ void PML::SetBoundaries()
|
||||
}
|
||||
}
|
||||
|
||||
void PML::SetAttributes(Mesh *mesh_)
|
||||
void CartesianPML::SetAttributes(Mesh *mesh_)
|
||||
{
|
||||
// Initialize bdr attributes
|
||||
for (int i = 0; i < mesh_->GetNBE(); ++i)
|
||||
@@ -999,8 +1002,8 @@ void PML::SetAttributes(Mesh *mesh_)
|
||||
mesh_->SetAttributes();
|
||||
}
|
||||
|
||||
void PML::StretchFunction(const Vector &x,
|
||||
vector<complex<double>> &dxs)
|
||||
void CartesianPML::StretchFunction(const Vector &x,
|
||||
vector<complex<double>> &dxs)
|
||||
{
|
||||
complex<double> zi = complex<double>(0., 1.);
|
||||
|
||||
|
||||
+38
-34
@@ -44,7 +44,7 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Class for setting up a simple Cartesian PML region
|
||||
class PML
|
||||
class CartesianPML
|
||||
{
|
||||
private:
|
||||
Mesh *mesh;
|
||||
@@ -69,7 +69,7 @@ private:
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PML(Mesh *mesh_,Array2D<double> length_);
|
||||
CartesianPML(Mesh *mesh_,Array2D<double> length_);
|
||||
|
||||
// Return Computational Domain Boundary
|
||||
Array2D<double> GetCompDomainBdr() {return comp_dom_bdr;}
|
||||
@@ -91,12 +91,12 @@ public:
|
||||
class PMLDiagMatrixCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
PML * pml = nullptr;
|
||||
void (*Function)(const Vector &, PML *, Vector &);
|
||||
CartesianPML * pml = nullptr;
|
||||
void (*Function)(const Vector &, CartesianPML *, Vector &);
|
||||
public:
|
||||
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, PML *,
|
||||
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
|
||||
Vector &),
|
||||
PML * pml_)
|
||||
CartesianPML * pml_)
|
||||
: VectorCoefficient(dim), pml(pml_), Function(F)
|
||||
{}
|
||||
|
||||
@@ -125,13 +125,13 @@ void source(const Vector &x, Vector & f);
|
||||
|
||||
// Functions for computing the necessary coefficients after PML stretching.
|
||||
// J is the Jacobian matrix of the stretching function
|
||||
void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D);
|
||||
|
||||
Array2D<double> comp_domain_bdr;
|
||||
Array2D<double> domain_bdr;
|
||||
@@ -295,7 +295,7 @@ int main(int argc, char *argv[])
|
||||
length = 0.25;
|
||||
break;
|
||||
}
|
||||
PML * pml = new PML(mesh,length);
|
||||
CartesianPML * pml = new CartesianPML(mesh,length);
|
||||
comp_domain_bdr = pml->GetCompDomainBdr();
|
||||
domain_bdr = pml->GetDomainBdr();
|
||||
|
||||
@@ -478,11 +478,11 @@ int main(int argc, char *argv[])
|
||||
if (!pa && mumps_solver)
|
||||
{
|
||||
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
|
||||
MUMPSSolver mumps(A->GetComm());
|
||||
MUMPSSolver mumps;
|
||||
mumps.SetPrintLevel(0);
|
||||
mumps.SetMatrixSymType(MUMPSSolver::MatType::UNSYMMETRIC);
|
||||
mumps.SetOperator(*A);
|
||||
mumps.Mult(B, X);
|
||||
mumps.Mult(B,X);
|
||||
delete A;
|
||||
}
|
||||
#endif
|
||||
@@ -524,14 +524,16 @@ int main(int argc, char *argv[])
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
std::unique_ptr<Operator> pc_r;
|
||||
std::unique_ptr<Operator> pc_i;
|
||||
Operator *pc_r = nullptr;
|
||||
Operator *pc_i = nullptr;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
pc_r.reset(new OperatorJacobiSmoother(prec, ess_tdof_list));
|
||||
pc_i.reset(new ScaledOperator(pc_r.get(), s));
|
||||
OperatorJacobiSmoother *d00 = new OperatorJacobiSmoother(prec, ess_tdof_list);
|
||||
ScaledOperator *d11 = new ScaledOperator(d00, s);
|
||||
pc_r = d00;
|
||||
pc_i = d11;
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -539,13 +541,15 @@ int main(int argc, char *argv[])
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// Hypre AMS
|
||||
pc_r.reset(new HypreAMS(*PCOpAh.As<HypreParMatrix>(), fespace));
|
||||
pc_i.reset(new ScaledOperator(pc_r.get(), s));
|
||||
HypreAMS *ams00 = new HypreAMS(*PCOpAh.As<HypreParMatrix>(), fespace);
|
||||
ScaledOperator *ams11 = new ScaledOperator(ams00, s);
|
||||
pc_r = ams00;
|
||||
pc_i = ams11;
|
||||
}
|
||||
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, pc_r.get());
|
||||
BlockDP.SetDiagonalBlock(1, pc_i.get());
|
||||
BlockDP.SetDiagonalBlock(0, pc_r);
|
||||
BlockDP.SetDiagonalBlock(1, pc_i);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
@@ -880,7 +884,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector & D)
|
||||
void detJ_JT_J_inv_Re(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -897,7 +901,7 @@ void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector & D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector & D)
|
||||
void detJ_JT_J_inv_Im(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -914,7 +918,7 @@ void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector & D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector & D)
|
||||
void detJ_JT_J_inv_abs(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -931,7 +935,7 @@ void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector & D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector & D)
|
||||
void detJ_inv_JT_J_Re(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
@@ -956,7 +960,7 @@ void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector & D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector & D)
|
||||
void detJ_inv_JT_J_Im(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -980,7 +984,7 @@ void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector & D)
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector & D)
|
||||
void detJ_inv_JT_J_abs(const Vector &x, CartesianPML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
@@ -1004,14 +1008,14 @@ void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector & D)
|
||||
}
|
||||
}
|
||||
|
||||
PML::PML(Mesh *mesh_, Array2D<double> length_)
|
||||
CartesianPML::CartesianPML(Mesh *mesh_, Array2D<double> length_)
|
||||
: mesh(mesh_), length(length_)
|
||||
{
|
||||
dim = mesh->Dimension();
|
||||
SetBoundaries();
|
||||
}
|
||||
|
||||
void PML::SetBoundaries()
|
||||
void CartesianPML::SetBoundaries()
|
||||
{
|
||||
comp_dom_bdr.SetSize(dim, 2);
|
||||
dom_bdr.SetSize(dim, 2);
|
||||
@@ -1026,7 +1030,7 @@ void PML::SetBoundaries()
|
||||
}
|
||||
}
|
||||
|
||||
void PML::SetAttributes(ParMesh *pmesh)
|
||||
void CartesianPML::SetAttributes(ParMesh *pmesh)
|
||||
{
|
||||
// Initialize bdr attributes
|
||||
for (int i = 0; i < pmesh->GetNBE(); ++i)
|
||||
@@ -1076,8 +1080,8 @@ void PML::SetAttributes(ParMesh *pmesh)
|
||||
pmesh->SetAttributes();
|
||||
}
|
||||
|
||||
void PML::StretchFunction(const Vector &x,
|
||||
vector<complex<double>> &dxs)
|
||||
void CartesianPML::StretchFunction(const Vector &x,
|
||||
vector<complex<double>> &dxs)
|
||||
{
|
||||
complex<double> zi = complex<double>(0., 1.);
|
||||
|
||||
|
||||
@@ -63,7 +63,6 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
bool nc = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
|
||||
@@ -78,9 +77,6 @@ int main(int argc, char *argv[])
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&nc, "-nc", "--non-conforming", "-c",
|
||||
"--conforming",
|
||||
"Mark the mesh as nonconforming before partitioning.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
@@ -106,11 +102,6 @@ int main(int argc, char *argv[])
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
dim = mesh->Dimension();
|
||||
int sdim = mesh->SpaceDimension();
|
||||
if (nc)
|
||||
{
|
||||
// Can set to false to use conformal refinement for simplices.
|
||||
mesh->EnsureNCMesh(true);
|
||||
}
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
|
||||
@@ -1,621 +0,0 @@
|
||||
// MFEM Example 34
|
||||
//
|
||||
// Compile with: make ex34
|
||||
//
|
||||
// Sample runs: ex34 -o 2
|
||||
// ex34 -o 2 -pa -hex
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex34 -o 2 -pa -hex -d cuda
|
||||
// ex34 -o 2 -no-pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple magnetostatic problem
|
||||
// curl curl A = J where the current density J is computed on a
|
||||
// subset of the domain as J = -sigma grad phi. We discretize the
|
||||
// vector potential with Nedelec finite elements, the scalar
|
||||
// potential with Lagrange finite elements, and the current
|
||||
// density with Raviart-Thomas finite elements.
|
||||
//
|
||||
// The example demonstrates the use of a SubMesh to compute the
|
||||
// scalar potential and its associated current density which is
|
||||
// then transferred to the original mesh and used as a source
|
||||
// function.
|
||||
//
|
||||
// Note that this example takes certain liberties with the
|
||||
// current density which is not necessarily divergence free
|
||||
// as it should be. This was done to focus on the use of the
|
||||
// SubMesh to transfer information between a full mesh and a
|
||||
// sub-domain. A more rigorous implementation might employ an
|
||||
// H(div) saddle point solver to obtain a divergence free J on
|
||||
// the SubMesh. It would then also need to ensure that the r.h.s.
|
||||
// of curl curl A = J does in fact lie in the range of the weak
|
||||
// curl operator by performing a divergence cleaning procedure
|
||||
// before the solve. After divergence cleaning the delta
|
||||
// parameter would probably not be needed.
|
||||
//
|
||||
// This example is designed to make use of a specific mesh which
|
||||
// has a known configuration of elements and boundary attributes.
|
||||
// Other meshes could be used but extra care would be required to
|
||||
// properly define the SubMesh and the necessary boundaries.
|
||||
//
|
||||
// We recommend viewing examples 1 and 3 before viewing this
|
||||
// example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static bool pa_ = false;
|
||||
static bool algebraic_ceed_ = false;
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
GridFunction &j_cond);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/fichera-mixed.mesh";
|
||||
Array<int> cond_attr;
|
||||
Array<int> submesh_elems;
|
||||
Array<int> sym_plane_attr;
|
||||
Array<int> phi0_attr;
|
||||
Array<int> phi1_attr;
|
||||
Array<int> jn_zero_attr;
|
||||
int ref_levels = 1;
|
||||
int order = 1;
|
||||
double delta_const = 1e-6;
|
||||
bool mixed = true;
|
||||
bool static_cond = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&delta_const, "-mc", "--magnetic-cond",
|
||||
"Magnetic Conductivity");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&mixed, "-mixed", "--mixed-mesh", "-hex",
|
||||
"--hex-mesh", "Mixed mesh of hexahedral mesh.");
|
||||
args.AddOption(&pa_, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
#ifdef MFEM_USE_CEED
|
||||
args.AddOption(&algebraic_ceed_, "-a", "--algebraic", "-no-a", "--no-algebraic",
|
||||
"Use algebraic Ceed solver");
|
||||
#endif
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
if (!mixed || pa_)
|
||||
{
|
||||
mesh_file = "../data/fichera.mesh";
|
||||
}
|
||||
|
||||
if (submesh_elems.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0)
|
||||
{
|
||||
submesh_elems.SetSize(5);
|
||||
submesh_elems[0] = 0;
|
||||
submesh_elems[1] = 2;
|
||||
submesh_elems[2] = 3;
|
||||
submesh_elems[3] = 4;
|
||||
submesh_elems[4] = 9;
|
||||
}
|
||||
else if (strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
submesh_elems.SetSize(7);
|
||||
submesh_elems[0] = 10;
|
||||
submesh_elems[1] = 14;
|
||||
submesh_elems[2] = 34;
|
||||
submesh_elems[3] = 36;
|
||||
submesh_elems[4] = 37;
|
||||
submesh_elems[5] = 38;
|
||||
submesh_elems[6] = 39;
|
||||
}
|
||||
}
|
||||
if (sym_plane_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
sym_plane_attr.SetSize(8);
|
||||
sym_plane_attr[0] = 9;
|
||||
sym_plane_attr[1] = 10;
|
||||
sym_plane_attr[2] = 11;
|
||||
sym_plane_attr[3] = 12;
|
||||
sym_plane_attr[4] = 13;
|
||||
sym_plane_attr[5] = 14;
|
||||
sym_plane_attr[6] = 15;
|
||||
sym_plane_attr[7] = 16;
|
||||
}
|
||||
}
|
||||
if (phi0_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
phi0_attr.Append(2);
|
||||
}
|
||||
}
|
||||
if (phi1_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
phi1_attr.Append(23);
|
||||
}
|
||||
}
|
||||
if (jn_zero_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
jn_zero_attr.Append(25);
|
||||
}
|
||||
for (int i=0; i<sym_plane_attr.Size(); i++)
|
||||
{
|
||||
jn_zero_attr.Append(sym_plane_attr[i]);
|
||||
}
|
||||
}
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
if (!mixed || pa_)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
|
||||
if (ref_levels > 0)
|
||||
{
|
||||
ref_levels--;
|
||||
}
|
||||
}
|
||||
|
||||
int submesh_attr = -1;
|
||||
if (cond_attr.Size() == 0 && submesh_elems.Size() > 0)
|
||||
{
|
||||
int max_attr = mesh.attributes.Max();
|
||||
submesh_attr = max_attr + 1;
|
||||
|
||||
for (int i=0; i<submesh_elems.Size(); i++)
|
||||
{
|
||||
mesh.SetAttribute(submesh_elems[i], submesh_attr);
|
||||
}
|
||||
mesh.SetAttributes();
|
||||
|
||||
if (cond_attr.Size() == 0)
|
||||
{
|
||||
cond_attr.Append(submesh_attr);
|
||||
}
|
||||
}
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement.
|
||||
{
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5b. Extract a submesh covering a portion of the domain
|
||||
SubMesh mesh_cond(SubMesh::CreateFromDomain(mesh, cond_attr));
|
||||
|
||||
// 6. Define a suitable finite element space on the SubMesh and compute
|
||||
// the current density as an H(div) field.
|
||||
RT_FECollection fec_cond_rt(order - 1, dim);
|
||||
FiniteElementSpace fes_cond_rt(&mesh_cond, &fec_cond_rt);
|
||||
GridFunction j_cond(&fes_cond_rt);
|
||||
|
||||
ComputeCurrentDensityOnSubMesh(order, phi0_attr, phi1_attr, jn_zero_attr,
|
||||
j_cond);
|
||||
|
||||
// 6a. Save the SubMesh and associated current density in parallel. This
|
||||
// output can be viewed later using GLVis:
|
||||
// "glvis -np <np> -m cond_mesh -g cond_j"
|
||||
{
|
||||
ostringstream mesh_name, cond_name;
|
||||
mesh_name << "cond.mesh";
|
||||
cond_name << "cond_j.gf";
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
mesh_cond.Print(mesh_ofs);
|
||||
|
||||
ofstream cond_ofs(cond_name.str().c_str());
|
||||
cond_ofs.precision(8);
|
||||
j_cond.Save(cond_ofs);
|
||||
}
|
||||
// 6b. Send the current density, computed on the SubMesh, to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream port_sock(vishost, visport);
|
||||
port_sock.precision(8);
|
||||
port_sock << "solution\n" << mesh_cond << j_cond
|
||||
<< "window_title 'Conductor J'"
|
||||
<< "window_geometry 400 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 7. Define a parallel finite element space on the full mesh. Here we use
|
||||
// the H(curl) finite elements for the vector potential and H(div) for the
|
||||
// current density.
|
||||
ND_FECollection fec_nd(order, dim);
|
||||
RT_FECollection fec_rt(order - 1, dim);
|
||||
FiniteElementSpace fespace_nd(&mesh, &fec_nd);
|
||||
FiniteElementSpace fespace_rt(&mesh, &fec_rt);
|
||||
|
||||
GridFunction j_full(&fespace_rt);
|
||||
j_full = 0.0;
|
||||
mesh_cond.Transfer(j_cond, j_full);
|
||||
|
||||
// 7a. Send the transferred current density to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << j_full
|
||||
<< "window_title 'J Full'"
|
||||
<< "window_geometry 400 430 400 350" << flush;
|
||||
}
|
||||
|
||||
// 8. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined by
|
||||
// marking all the boundary attributes except for those on a symmetry
|
||||
// plane as essential (Dirichlet) and converting them to a list of true
|
||||
// dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
if (mesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(mesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
for (int i=0; i<sym_plane_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr[sym_plane_attr[i]-1] = 0;
|
||||
}
|
||||
fespace_nd.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (J,W_i) where J is given by the function H(div) field transferred
|
||||
// from the SubMesh and W_i are the basis functions in the finite
|
||||
// element fespace.
|
||||
VectorGridFunctionCoefficient jCoef(&j_full);
|
||||
LinearForm b(&fespace_nd);
|
||||
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(jCoef));
|
||||
b.Assemble();
|
||||
|
||||
// 10. Define the solution vector x as a parallel finite element grid
|
||||
// function corresponding to fespace. Initialize x to zero.
|
||||
GridFunction x(&fespace_nd);
|
||||
x = 0.0;
|
||||
|
||||
// 11. Set up the parallel bilinear form corresponding to the EM diffusion
|
||||
// operator curl muinv curl + delta I, by adding the curl-curl and the
|
||||
// mass domain integrators. For standard magnetostatics equations choose
|
||||
// delta << 1. Larger values of delta should make the linear system
|
||||
// easier to solve at the expense of resembling a diffusive quasistatic
|
||||
// magnetic field. A reasonable balance must be found whenever the mesh
|
||||
// or problem setup is altered.
|
||||
ConstantCoefficient muinv(1.0);
|
||||
ConstantCoefficient delta(delta_const);
|
||||
BilinearForm a(&fespace_nd);
|
||||
if (pa_) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.AddDomainIntegrator(new CurlCurlIntegrator(muinv));
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(delta));
|
||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, static condensation, etc.
|
||||
if (static_cond) { a.EnableStaticCondensation(); }
|
||||
a.Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 13. Solve the system AX=B
|
||||
if (pa_) // Jacobi preconditioning in partial assembly mode
|
||||
{
|
||||
cout << "\nSolving for magnetic vector potential "
|
||||
<< "using CG with a Jacobi preconditioner" << endl;
|
||||
|
||||
OperatorJacobiSmoother M(a, ess_tdof_list);
|
||||
PCG(*A, M, B, X, 1, 1000, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
cout << "\nSolving for magnetic vector potential "
|
||||
<< "using CG with a Gauss-Seidel preconditioner" << endl;
|
||||
|
||||
// 13a. Define a simple symmetric Gauss-Seidel preconditioner and use
|
||||
// it to solve the system Ax=b with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 500, 1e-12, 0.0);
|
||||
#else
|
||||
cout << "\nSolving for magnetic vector potential "
|
||||
<< "using UMFPack" << endl;
|
||||
|
||||
// 13a. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the
|
||||
// system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
#endif
|
||||
}
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "refined.mesh";
|
||||
sol_name << "sol.gf";
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
mesh.Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << x
|
||||
<< "window_title 'Vector Potential'"
|
||||
<< "window_geometry 800 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 17. Compute the magnetic flux as the curl of the solution
|
||||
DiscreteLinearOperator curl(&fespace_nd, &fespace_rt);
|
||||
curl.AddDomainInterpolator(new CurlInterpolator);
|
||||
curl.Assemble();
|
||||
curl.Finalize();
|
||||
|
||||
GridFunction dx(&fespace_rt);
|
||||
curl.Mult(x, dx);
|
||||
|
||||
// 18. Save the curl of the solution in parallel. This output can be viewed
|
||||
// later using GLVis: "glvis -np <np> -m mesh -g dsol".
|
||||
{
|
||||
ostringstream dsol_name;
|
||||
dsol_name << "dsol.gf";
|
||||
|
||||
ofstream dsol_ofs(dsol_name.str().c_str());
|
||||
dsol_ofs.precision(8);
|
||||
dx.Save(dsol_ofs);
|
||||
}
|
||||
|
||||
// 19. Send the curl of the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << dx
|
||||
<< "window_title 'Magnetic Flux'"
|
||||
<< "window_geometry 1200 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 20. Clean exit
|
||||
return 0;
|
||||
}
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
GridFunction &j_cond)
|
||||
{
|
||||
// Extract the finite element space and mesh on which j_cond is defined
|
||||
FiniteElementSpace &fes_cond_rt = *j_cond.FESpace();
|
||||
Mesh &mesh_cond = *fes_cond_rt.GetMesh();
|
||||
int dim = mesh_cond.Dimension();
|
||||
|
||||
// Define a parallel finite element space on the SubMesh. Here we use the H1
|
||||
// finite elements for the electrostatic potential.
|
||||
H1_FECollection fec_h1(order, dim);
|
||||
FiniteElementSpace fes_cond_h1(&mesh_cond, &fec_h1);
|
||||
|
||||
// Define the conductivity coefficient and the boundaries associated with the
|
||||
// fixed potentials phi0 and phi1 which will drive the current.
|
||||
ConstantCoefficient sigmaCoef(1.0);
|
||||
Array<int> ess_bdr_phi(mesh_cond.bdr_attributes.Max());
|
||||
Array<int> ess_bdr_j(mesh_cond.bdr_attributes.Max());
|
||||
Array<int> ess_bdr_tdof_phi;
|
||||
ess_bdr_phi = 0;
|
||||
ess_bdr_j = 0;
|
||||
for (int i=0; i<phi0_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr_phi[phi0_attr[i]-1] = 1;
|
||||
}
|
||||
for (int i=0; i<phi1_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr_phi[phi1_attr[i]-1] = 1;
|
||||
}
|
||||
for (int i=0; i<jn_zero_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr_j[jn_zero_attr[i]-1] = 1;
|
||||
}
|
||||
fes_cond_h1.GetEssentialTrueDofs(ess_bdr_phi, ess_bdr_tdof_phi);
|
||||
|
||||
// Setup the bilinear form corresponding to -Div(sigma Grad phi)
|
||||
BilinearForm a_h1(&fes_cond_h1);
|
||||
a_h1.AddDomainIntegrator(new DiffusionIntegrator(sigmaCoef));
|
||||
a_h1.Assemble();
|
||||
|
||||
// Set the r.h.s. to zero
|
||||
LinearForm b_h1(&fes_cond_h1);
|
||||
b_h1 = 0.0;
|
||||
|
||||
// Setup the boundary conditions on phi
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
GridFunction phi_h1(&fes_cond_h1);
|
||||
phi_h1 = 0.0;
|
||||
|
||||
Array<int> bdr0(mesh_cond.bdr_attributes.Max()); bdr0 = 0;
|
||||
for (int i=0; i<phi0_attr.Size(); i++)
|
||||
{
|
||||
bdr0[phi0_attr[i]-1] = 1;
|
||||
}
|
||||
phi_h1.ProjectBdrCoefficient(zero, bdr0);
|
||||
|
||||
Array<int> bdr1(mesh_cond.bdr_attributes.Max()); bdr1 = 0;
|
||||
for (int i=0; i<phi1_attr.Size(); i++)
|
||||
{
|
||||
bdr1[phi1_attr[i]-1] = 1;
|
||||
}
|
||||
phi_h1.ProjectBdrCoefficient(one, bdr1);
|
||||
|
||||
{
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a_h1.FormLinearSystem(ess_bdr_tdof_phi, phi_h1, b_h1, A, X, B);
|
||||
|
||||
// Solve the linear system
|
||||
if (!pa_)
|
||||
{
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
cout << "\nSolving for electric potential using PCG "
|
||||
<< "with a Gauss-Seidel preconditioner" << endl;
|
||||
|
||||
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
#else
|
||||
cout << "\nSolving for electric potential using UMFPack" << endl;
|
||||
|
||||
// If MFEM was compiled with SuiteSparse,
|
||||
// use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << "\nSolving for electric potential using CG" << endl;
|
||||
|
||||
if (UsesTensorBasis(fes_cond_h1))
|
||||
{
|
||||
if (algebraic_ceed_)
|
||||
{
|
||||
ceed::AlgebraicSolver M(a_h1, ess_bdr_tdof_phi);
|
||||
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorJacobiSmoother M(a_h1, ess_bdr_tdof_phi);
|
||||
PCG(*A, M, B, X, 1, 400, 1e-12, 0.0);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
CG(*A, B, X, 1, 400, 1e-12, 0.0);
|
||||
}
|
||||
}
|
||||
a_h1.RecoverFEMSolution(X, b_h1, phi_h1);
|
||||
}
|
||||
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream port_sock(vishost, visport);
|
||||
port_sock.precision(8);
|
||||
port_sock << "solution\n" << mesh_cond << phi_h1
|
||||
<< "window_title 'Conductor Potential'"
|
||||
<< "window_geometry 0 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// Solve for the current density J = -sigma Grad phi with boundary conditions
|
||||
// J.n = 0 on the walls of the conductor but not on the ports where phi=0 and
|
||||
// phi=1.
|
||||
|
||||
// J will be computed in H(div) so we need an RT mass matrix
|
||||
BilinearForm m_rt(&fes_cond_rt);
|
||||
m_rt.AddDomainIntegrator(new VectorFEMassIntegrator);
|
||||
m_rt.Assemble();
|
||||
|
||||
// Assemble the (sigma Grad phi) operator
|
||||
MixedBilinearForm d_h1(&fes_cond_h1, &fes_cond_rt);
|
||||
d_h1.AddDomainIntegrator(new MixedVectorGradientIntegrator(sigmaCoef));
|
||||
d_h1.Assemble();
|
||||
|
||||
// Compute the r.h.s, b_rt = sigma E = -sigma Grad phi
|
||||
LinearForm b_rt(&fes_cond_rt);
|
||||
d_h1.Mult(phi_h1, b_rt);
|
||||
b_rt *= -1.0;
|
||||
|
||||
// Apply the necessary boundary conditions and solve for J in H(div)
|
||||
cout << "\nSolving for current density in H(Div) "
|
||||
<< "using diagonally scaled CG" << endl;
|
||||
cout << "Size of linear system: "
|
||||
<< fes_cond_rt.GetTrueVSize() << endl;
|
||||
|
||||
Array<int> ess_bdr_tdof_rt;
|
||||
OperatorPtr M;
|
||||
Vector B, X;
|
||||
|
||||
fes_cond_rt.GetEssentialTrueDofs(ess_bdr_j, ess_bdr_tdof_rt);
|
||||
|
||||
j_cond = 0.0;
|
||||
m_rt.FormLinearSystem(ess_bdr_tdof_rt, j_cond, b_rt, M, X, B);
|
||||
|
||||
CGSolver cg;
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*M);
|
||||
cg.Mult(B, X);
|
||||
m_rt.RecoverFEMSolution(X, b_rt, j_cond);
|
||||
}
|
||||
@@ -1,648 +0,0 @@
|
||||
// MFEM Example 34 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex34p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex34p -o 2
|
||||
// mpirun -np 4 ex34p -o 2 -hex -pa
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex34p -o 2 -hex -pa -d cuda
|
||||
// mpirun -np 4 ex34p -o 2 -no-pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple magnetostatic problem
|
||||
// curl curl A = J where the current density J is computed on a
|
||||
// subset of the domain as J = -sigma grad phi. We discretize the
|
||||
// vector potential with Nedelec finite elements, the scalar
|
||||
// potential with Lagrange finite elements, and the current
|
||||
// density with Raviart-Thomas finite elements.
|
||||
//
|
||||
// The example demonstrates the use of a SubMesh to compute the
|
||||
// scalar potential and its associated current density which is
|
||||
// then transferred to the original mesh and used as a source
|
||||
// function.
|
||||
//
|
||||
// Note that this example takes certain liberties with the
|
||||
// current density which is not necessarily divergence free
|
||||
// as it should be. This was done to focus on the use of the
|
||||
// SubMesh to transfer information between a full mesh and a
|
||||
// sub-domain. A more rigorous implementation might employ an
|
||||
// H(div) saddle point solver to obtain a divergence free J on
|
||||
// the SubMesh. It would then also need to ensure that the r.h.s.
|
||||
// of curl curl A = J does in fact lie in the range of the weak
|
||||
// curl operator by performing a divergence cleaning procedure
|
||||
// before the solve. After divergence cleaning the delta
|
||||
// parameter would probably not be needed.
|
||||
//
|
||||
// This example is designed to make use of a specific mesh which
|
||||
// has a known configuration of elements and boundary attributes.
|
||||
// Other meshes could be used but extra care would be required to
|
||||
// properly define the SubMesh and the necessary boundaries.
|
||||
//
|
||||
// We recommend viewing examples 1 and 3 before viewing this
|
||||
// example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
ParGridFunction &j_cond);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
const char *mesh_file = "../data/fichera-mixed.mesh";
|
||||
Array<int> cond_attr;
|
||||
Array<int> submesh_elems;
|
||||
Array<int> sym_plane_attr;
|
||||
Array<int> phi0_attr;
|
||||
Array<int> phi1_attr;
|
||||
Array<int> jn_zero_attr;
|
||||
int ser_ref_levels = 1;
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
double delta_const = 1e-6;
|
||||
bool mixed = true;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX = false;
|
||||
#endif
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
|
||||
"Number of times to refine the mesh uniformly in serial.");
|
||||
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
|
||||
"Number of times to refine the mesh uniformly in parallel.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&delta_const, "-mc", "--magnetic-cond",
|
||||
"Magnetic Conductivity");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&mixed, "-mixed", "--mixed-mesh", "-hex",
|
||||
"--hex-mesh", "Mixed mesh of hexahedral mesh.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
#ifdef MFEM_USE_AMGX
|
||||
args.AddOption(&useAmgX, "-amgx", "--useAmgX", "-no-amgx",
|
||||
"--no-useAmgX",
|
||||
"Enable or disable AmgX in MatrixFreeAMS.");
|
||||
#endif
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
if (!mixed || pa)
|
||||
{
|
||||
mesh_file = "../data/fichera.mesh";
|
||||
}
|
||||
|
||||
if (submesh_elems.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0)
|
||||
{
|
||||
submesh_elems.SetSize(5);
|
||||
submesh_elems[0] = 0;
|
||||
submesh_elems[1] = 2;
|
||||
submesh_elems[2] = 3;
|
||||
submesh_elems[3] = 4;
|
||||
submesh_elems[4] = 9;
|
||||
}
|
||||
else if (strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
submesh_elems.SetSize(7);
|
||||
submesh_elems[0] = 10;
|
||||
submesh_elems[1] = 14;
|
||||
submesh_elems[2] = 34;
|
||||
submesh_elems[3] = 36;
|
||||
submesh_elems[4] = 37;
|
||||
submesh_elems[5] = 38;
|
||||
submesh_elems[6] = 39;
|
||||
}
|
||||
}
|
||||
if (sym_plane_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
sym_plane_attr.SetSize(8);
|
||||
sym_plane_attr[0] = 9;
|
||||
sym_plane_attr[1] = 10;
|
||||
sym_plane_attr[2] = 11;
|
||||
sym_plane_attr[3] = 12;
|
||||
sym_plane_attr[4] = 13;
|
||||
sym_plane_attr[5] = 14;
|
||||
sym_plane_attr[6] = 15;
|
||||
sym_plane_attr[7] = 16;
|
||||
}
|
||||
}
|
||||
if (phi0_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
phi0_attr.Append(2);
|
||||
}
|
||||
}
|
||||
if (phi1_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
phi1_attr.Append(23);
|
||||
}
|
||||
}
|
||||
if (jn_zero_attr.Size() == 0)
|
||||
{
|
||||
if (strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0)
|
||||
{
|
||||
jn_zero_attr.Append(25);
|
||||
}
|
||||
for (int i=0; i<sym_plane_attr.Size(); i++)
|
||||
{
|
||||
jn_zero_attr.Append(sym_plane_attr[i]);
|
||||
}
|
||||
}
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
if (!mixed || pa)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
|
||||
if (ser_ref_levels > 0)
|
||||
{
|
||||
ser_ref_levels--;
|
||||
}
|
||||
else
|
||||
{
|
||||
par_ref_levels--;
|
||||
}
|
||||
}
|
||||
|
||||
int submesh_attr = -1;
|
||||
if (cond_attr.Size() == 0 && submesh_elems.Size() > 0)
|
||||
{
|
||||
int max_attr = mesh->attributes.Max();
|
||||
submesh_attr = max_attr + 1;
|
||||
|
||||
for (int i=0; i<submesh_elems.Size(); i++)
|
||||
{
|
||||
mesh->SetAttribute(submesh_elems[i], submesh_attr);
|
||||
}
|
||||
mesh->SetAttributes();
|
||||
|
||||
if (cond_attr.Size() == 0)
|
||||
{
|
||||
cond_attr.Append(submesh_attr);
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement.
|
||||
{
|
||||
int ref_levels = ser_ref_levels;
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
{
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6b. Extract a submesh covering a portion of the domain
|
||||
ParSubMesh pmesh_cond(ParSubMesh::CreateFromDomain(pmesh, cond_attr));
|
||||
|
||||
// 7. Define a suitable finite element space on the SubMesh and compute
|
||||
// the current density as an H(div) field.
|
||||
RT_FECollection fec_cond_rt(order - 1, dim);
|
||||
ParFiniteElementSpace fes_cond_rt(&pmesh_cond, &fec_cond_rt);
|
||||
ParGridFunction j_cond(&fes_cond_rt);
|
||||
|
||||
ComputeCurrentDensityOnSubMesh(order, phi0_attr, phi1_attr, jn_zero_attr,
|
||||
j_cond);
|
||||
|
||||
// 7a. Save the SubMesh and associated current density in parallel. This
|
||||
// output can be viewed later using GLVis:
|
||||
// "glvis -np <np> -m cond_mesh -g cond_j"
|
||||
{
|
||||
ostringstream mesh_name, cond_name;
|
||||
mesh_name << "cond_mesh." << setfill('0') << setw(6) << myid;
|
||||
cond_name << "cond_j." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh_cond.Print(mesh_ofs);
|
||||
|
||||
ofstream cond_ofs(cond_name.str().c_str());
|
||||
cond_ofs.precision(8);
|
||||
j_cond.Save(cond_ofs);
|
||||
}
|
||||
// 7b. Send the current density, computed on the SubMesh, to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream port_sock(vishost, visport);
|
||||
port_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
port_sock.precision(8);
|
||||
port_sock << "solution\n" << pmesh_cond << j_cond
|
||||
<< "window_title 'Conductor J'"
|
||||
<< "window_geometry 400 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 8. Define a parallel finite element space on the full mesh. Here we use
|
||||
// the H(curl) finite elements for the vector potential and H(div) for the
|
||||
// current density.
|
||||
ND_FECollection fec_nd(order, dim);
|
||||
RT_FECollection fec_rt(order - 1, dim);
|
||||
ParFiniteElementSpace fespace_nd(&pmesh, &fec_nd);
|
||||
ParFiniteElementSpace fespace_rt(&pmesh, &fec_rt);
|
||||
|
||||
ParGridFunction j_full(&fespace_rt);
|
||||
j_full = 0.0;
|
||||
pmesh_cond.Transfer(j_cond, j_full);
|
||||
|
||||
// 8a. Send the transferred current density to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << pmesh << j_full
|
||||
<< "window_title 'J Full'"
|
||||
<< "window_geometry 400 430 400 350" << flush;
|
||||
}
|
||||
|
||||
// 9. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// by marking all the boundary attributes except for those on a symmetry
|
||||
// plane as essential (Dirichlet) and converting them to a list of
|
||||
// true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
for (int i=0; i<sym_plane_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr[sym_plane_attr[i]-1] = 0;
|
||||
}
|
||||
fespace_nd.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 10. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (J,W_i) where J is given by the function H(div) field transferred
|
||||
// from the SubMesh and W_i are the basis functions in the finite
|
||||
// element fespace.
|
||||
VectorGridFunctionCoefficient jCoef(&j_full);
|
||||
ParLinearForm b(&fespace_nd);
|
||||
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(jCoef));
|
||||
b.Assemble();
|
||||
|
||||
// 11. Define the solution vector x as a parallel finite element grid
|
||||
// function corresponding to fespace. Initialize x to zero.
|
||||
ParGridFunction x(&fespace_nd);
|
||||
x = 0.0;
|
||||
|
||||
// 12. Set up the parallel bilinear form corresponding to the EM diffusion
|
||||
// operator curl muinv curl + delta I, by adding the curl-curl and the
|
||||
// mass domain integrators. For standard magnetostatics equations choose
|
||||
// delta << 1. Larger values of delta should make the linear system
|
||||
// easier to solve at the expense of resembling a diffusive quasistatic
|
||||
// magnetic field. A reasonable balance must be found whenever the mesh
|
||||
// or problem setup is altered.
|
||||
ConstantCoefficient muinv(1.0);
|
||||
ConstantCoefficient delta(delta_const);
|
||||
ParBilinearForm a(&fespace_nd);
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.AddDomainIntegrator(new CurlCurlIntegrator(muinv));
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(delta));
|
||||
|
||||
// 13. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, static condensation, etc.
|
||||
if (static_cond) { a.EnableStaticCondensation(); }
|
||||
a.Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\nSolving for magnetic vector potential "
|
||||
<< "using CG with AMS" << endl;
|
||||
}
|
||||
|
||||
// 14. Solve the system AX=B using PCG with an AMS preconditioner.
|
||||
if (pa)
|
||||
{
|
||||
#ifdef MFEM_USE_AMGX
|
||||
MatrixFreeAMS ams(a, *A, fespace_nd, &muinv, &delta, NULL, ess_bdr,
|
||||
useAmgX);
|
||||
#else
|
||||
MatrixFreeAMS ams(a, *A, fespace_nd, &muinv, &delta, NULL, ess_bdr);
|
||||
#endif
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*A);
|
||||
cg.SetPreconditioner(ams);
|
||||
cg.Mult(B, X);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Size of linear system: "
|
||||
<< A.As<HypreParMatrix>()->GetGlobalNumRows() << endl;
|
||||
}
|
||||
|
||||
ParFiniteElementSpace *prec_fespace =
|
||||
(a.StaticCondensationIsEnabled() ? a.SCParFESpace() : &fespace_nd);
|
||||
HypreAMS ams(*A.As<HypreParMatrix>(), prec_fespace);
|
||||
HyprePCG pcg(*A.As<HypreParMatrix>());
|
||||
pcg.SetTol(1e-12);
|
||||
pcg.SetMaxIter(500);
|
||||
pcg.SetPrintLevel(2);
|
||||
pcg.SetPreconditioner(ams);
|
||||
pcg.Mult(B, X);
|
||||
}
|
||||
|
||||
// 15. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 16. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "sol." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh.Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 17. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << pmesh << x
|
||||
<< "window_title 'Vector Potential'"
|
||||
<< "window_geometry 800 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 18. Compute the magnetic flux as the curl of the solution
|
||||
ParDiscreteLinearOperator curl(&fespace_nd, &fespace_rt);
|
||||
curl.AddDomainInterpolator(new CurlInterpolator);
|
||||
curl.Assemble();
|
||||
curl.Finalize();
|
||||
|
||||
ParGridFunction dx(&fespace_rt);
|
||||
curl.Mult(x, dx);
|
||||
|
||||
// 19. Save the curl of the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g dsol".
|
||||
{
|
||||
ostringstream dsol_name;
|
||||
dsol_name << "dsol." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream dsol_ofs(dsol_name.str().c_str());
|
||||
dsol_ofs.precision(8);
|
||||
dx.Save(dsol_ofs);
|
||||
}
|
||||
|
||||
// 20. Send the curl of the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << pmesh << dx
|
||||
<< "window_title 'Magnetic Flux'"
|
||||
<< "window_geometry 1200 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 21. Clean exit
|
||||
return 0;
|
||||
}
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
ParGridFunction &j_cond)
|
||||
{
|
||||
// Extract the finite element space and mesh on which j_cond is defined
|
||||
ParFiniteElementSpace &fes_cond_rt = *j_cond.ParFESpace();
|
||||
ParMesh &pmesh_cond = *fes_cond_rt.GetParMesh();
|
||||
int myid = fes_cond_rt.GetMyRank();
|
||||
int dim = pmesh_cond.Dimension();
|
||||
|
||||
// Define a parallel finite element space on the SubMesh. Here we use the
|
||||
// H1 finite elements for the electrostatic potential.
|
||||
H1_FECollection fec_h1(order, dim);
|
||||
ParFiniteElementSpace fes_cond_h1(&pmesh_cond, &fec_h1);
|
||||
|
||||
// Define the conductivity coefficient and the boundaries associated with the
|
||||
// fixed potentials phi0 and phi1 which will drive the current.
|
||||
ConstantCoefficient sigmaCoef(1.0);
|
||||
Array<int> ess_bdr_phi(pmesh_cond.bdr_attributes.Max());
|
||||
Array<int> ess_bdr_j(pmesh_cond.bdr_attributes.Max());
|
||||
Array<int> ess_bdr_tdof_phi;
|
||||
ess_bdr_phi = 0;
|
||||
ess_bdr_j = 0;
|
||||
for (int i=0; i<phi0_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr_phi[phi0_attr[i]-1] = 1;
|
||||
}
|
||||
for (int i=0; i<phi1_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr_phi[phi1_attr[i]-1] = 1;
|
||||
}
|
||||
for (int i=0; i<jn_zero_attr.Size(); i++)
|
||||
{
|
||||
ess_bdr_j[jn_zero_attr[i]-1] = 1;
|
||||
}
|
||||
fes_cond_h1.GetEssentialTrueDofs(ess_bdr_phi, ess_bdr_tdof_phi);
|
||||
|
||||
// Setup the bilinear form corresponding to -Div(sigma Grad phi)
|
||||
ParBilinearForm a_h1(&fes_cond_h1);
|
||||
a_h1.AddDomainIntegrator(new DiffusionIntegrator(sigmaCoef));
|
||||
a_h1.Assemble();
|
||||
|
||||
// Set the r.h.s. to zero
|
||||
ParLinearForm b_h1(&fes_cond_h1);
|
||||
b_h1 = 0.0;
|
||||
|
||||
// Setup the boundary conditions on phi
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
ParGridFunction phi_h1(&fes_cond_h1);
|
||||
phi_h1 = 0.0;
|
||||
|
||||
Array<int> bdr0(pmesh_cond.bdr_attributes.Max()); bdr0 = 0;
|
||||
for (int i=0; i<phi0_attr.Size(); i++)
|
||||
{
|
||||
bdr0[phi0_attr[i]-1] = 1;
|
||||
}
|
||||
phi_h1.ProjectBdrCoefficient(zero, bdr0);
|
||||
|
||||
Array<int> bdr1(pmesh_cond.bdr_attributes.Max()); bdr1 = 0;
|
||||
for (int i=0; i<phi1_attr.Size(); i++)
|
||||
{
|
||||
bdr1[phi1_attr[i]-1] = 1;
|
||||
}
|
||||
phi_h1.ProjectBdrCoefficient(one, bdr1);
|
||||
|
||||
// Solve the linear system using algebraic multigrid
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\nSolving for electric potential "
|
||||
<< "using CG with AMG" << endl;
|
||||
}
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a_h1.FormLinearSystem(ess_bdr_tdof_phi, phi_h1, b_h1, A, X, B);
|
||||
|
||||
HypreBoomerAMG prec;
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
a_h1.RecoverFEMSolution(X, b_h1, phi_h1);
|
||||
}
|
||||
{
|
||||
int num_procs = fes_cond_h1.GetNRanks();
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream port_sock(vishost, visport);
|
||||
port_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
port_sock.precision(8);
|
||||
port_sock << "solution\n" << pmesh_cond << phi_h1
|
||||
<< "window_title 'Conductor Potential'"
|
||||
<< "window_geometry 0 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// Solve for the current density J = -sigma Grad phi with boundary conditions
|
||||
// J.n = 0 on the walls of the conductor but not on the ports where phi=0 and
|
||||
// phi=1.
|
||||
|
||||
// J will be computed in H(div) so we need an RT mass matrix
|
||||
ParBilinearForm m_rt(&fes_cond_rt);
|
||||
m_rt.AddDomainIntegrator(new VectorFEMassIntegrator);
|
||||
m_rt.Assemble();
|
||||
|
||||
// Assemble the (sigma Grad phi) operator
|
||||
ParMixedBilinearForm d_h1(&fes_cond_h1, &fes_cond_rt);
|
||||
d_h1.AddDomainIntegrator(new MixedVectorGradientIntegrator(sigmaCoef));
|
||||
d_h1.Assemble();
|
||||
|
||||
// Compute the r.h.s, b_rt = sigma E = -sigma Grad phi
|
||||
ParLinearForm b_rt(&fes_cond_rt);
|
||||
d_h1.Mult(phi_h1, b_rt);
|
||||
b_rt *= -1.0;
|
||||
|
||||
// Apply the necessary boundary conditions and solve for J in H(div)
|
||||
HYPRE_BigInt glb_size_rt = fes_cond_rt.GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\nSolving for current density in H(Div) "
|
||||
<< "using diagonally scaled CG" << endl;
|
||||
cout << "Size of linear system: "
|
||||
<< glb_size_rt << endl;
|
||||
}
|
||||
Array<int> ess_bdr_tdof_rt;
|
||||
OperatorPtr M;
|
||||
Vector B, X;
|
||||
|
||||
fes_cond_rt.GetEssentialTrueDofs(ess_bdr_j, ess_bdr_tdof_rt);
|
||||
|
||||
j_cond = 0.0;
|
||||
m_rt.FormLinearSystem(ess_bdr_tdof_rt, j_cond, b_rt, M, X, B);
|
||||
|
||||
HypreDiagScale prec;
|
||||
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetOperator(*M);
|
||||
cg.Mult(B, X);
|
||||
m_rt.RecoverFEMSolution(X, b_rt, j_cond);
|
||||
}
|
||||
@@ -1,815 +0,0 @@
|
||||
// MFEM Example 35 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex35p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex35p -p 0 -o 2
|
||||
// mpirun -np 4 ex35p -p 0 -o 2 -pbc '22 23 24' -em 0
|
||||
// mpirun -np 4 ex35p -p 1 -o 1 -rp 2
|
||||
// mpirun -np 4 ex35p -p 1 -o 2
|
||||
// mpirun -np 4 ex35p -p 2 -o 1 -rp 2 -c 15
|
||||
//
|
||||
// Device sample runs:
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define and
|
||||
// solve simple complex-valued linear systems. It implements three
|
||||
// variants of a damped harmonic oscillator:
|
||||
//
|
||||
// 1) A scalar H1 field
|
||||
// -Div(a Grad u) - omega^2 b u + i omega c u = 0
|
||||
//
|
||||
// 2) A vector H(Curl) field
|
||||
// Curl(a Curl u) - omega^2 b u + i omega c u = 0
|
||||
//
|
||||
// 3) A vector H(Div) field
|
||||
// -Grad(a Div u) - omega^2 b u + i omega c u = 0
|
||||
//
|
||||
// In each case the field is driven by a forced oscillation, with
|
||||
// angular frequency omega, imposed at the boundary or a portion
|
||||
// of the boundary. The spatial variation of the boundary
|
||||
// condition is computed as an eigenmode of an appropriate
|
||||
// operator defined on a portion of the boundary i.e. a port
|
||||
// boundary condition.
|
||||
//
|
||||
// In electromagnetics the coefficients are typically named the
|
||||
// permeability, mu = 1/a, permittivity, epsilon = b, and
|
||||
// conductivity, sigma = c. The user can specify these constants
|
||||
// using either set of names.
|
||||
//
|
||||
// This example demonstrates how to transfer fields computed on a
|
||||
// boundary generated SubMesh to the full mesh and apply them as
|
||||
// boundary conditions. The default mesh and corresponding
|
||||
// boundary attributes were chosen to verify proper behavior on
|
||||
// both triangular and quadrilateral faces of tetrahedral,
|
||||
// wedge-shaped, and hexahedral elements.
|
||||
//
|
||||
// The example also demonstrates how to display a time-varying
|
||||
// solution as a sequence of fields sent to a single GLVis socket.
|
||||
//
|
||||
// We recommend viewing examples 11, 13, and 22 before viewing
|
||||
// this example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static double mu_ = 1.0;
|
||||
static double epsilon_ = 1.0;
|
||||
static double sigma_ = 2.0;
|
||||
|
||||
void SetPortBC(int prob, int dim, int mode, ParGridFunction &port_bc);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
const char *mesh_file = "../data/fichera-mixed.mesh";
|
||||
int ser_ref_levels = 1;
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
Array<int> port_bc_attr;
|
||||
int prob = 0;
|
||||
int mode = 1;
|
||||
double freq = -1.0;
|
||||
double omega = 2.0 * M_PI;
|
||||
double a_coef = 0.0;
|
||||
bool herm_conv = true;
|
||||
bool slu_solver = false;
|
||||
bool visualization = 1;
|
||||
bool mixed = true;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
|
||||
"Number of times to refine the mesh uniformly in serial.");
|
||||
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
|
||||
"Number of times to refine the mesh uniformly in parallel.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&prob, "-p", "--problem-type",
|
||||
"Choose between 0: H_1, 1: H(Curl), or 2: H(Div) "
|
||||
"damped harmonic oscillator.");
|
||||
args.AddOption(&mode, "-em", "--eigenmode",
|
||||
"Choose the index of the port eigenmode.");
|
||||
args.AddOption(&a_coef, "-a", "--stiffness-coef",
|
||||
"Stiffness coefficient (spring constant or 1/mu).");
|
||||
args.AddOption(&epsilon_, "-b", "--mass-coef",
|
||||
"Mass coefficient (or epsilon).");
|
||||
args.AddOption(&sigma_, "-c", "--damping-coef",
|
||||
"Damping coefficient (or sigma).");
|
||||
args.AddOption(&mu_, "-mu", "--permeability",
|
||||
"Permeability of free space (or 1/(spring constant)).");
|
||||
args.AddOption(&epsilon_, "-eps", "--permittivity",
|
||||
"Permittivity of free space (or mass constant).");
|
||||
args.AddOption(&sigma_, "-sigma", "--conductivity",
|
||||
"Conductivity (or damping constant).");
|
||||
args.AddOption(&freq, "-f", "--frequency",
|
||||
"Frequency (in Hz).");
|
||||
args.AddOption(&port_bc_attr, "-pbc", "--port-bc-attr",
|
||||
"Attributes of port boundary condition");
|
||||
args.AddOption(&herm_conv, "-herm", "--hermitian", "-no-herm",
|
||||
"--no-hermitian", "Use convention for Hermitian operators.");
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
args.AddOption(&slu_solver, "-slu", "--superlu", "-no-slu",
|
||||
"--no-superlu", "Use the SuperLU Solver.");
|
||||
#endif
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&mixed, "-mixed", "--mixed-mesh", "-hex",
|
||||
"--hex-mesh", "Mixed mesh of hexahedral mesh.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
|
||||
if (!mixed || pa)
|
||||
{
|
||||
mesh_file = "../data/fichera.mesh";
|
||||
}
|
||||
|
||||
if ( a_coef != 0.0 )
|
||||
{
|
||||
mu_ = 1.0 / a_coef;
|
||||
}
|
||||
if ( freq > 0.0 )
|
||||
{
|
||||
omega = 2.0 * M_PI * freq;
|
||||
}
|
||||
if (port_bc_attr.Size() == 0 &&
|
||||
(strcmp(mesh_file, "../data/fichera-mixed.mesh") == 0 ||
|
||||
strcmp(mesh_file, "../data/fichera.mesh") == 0))
|
||||
{
|
||||
port_bc_attr.SetSize(4);
|
||||
port_bc_attr[0] = 7;
|
||||
port_bc_attr[1] = 8;
|
||||
port_bc_attr[2] = 11;
|
||||
port_bc_attr[3] = 12;
|
||||
}
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
MFEM_VERIFY(prob >= 0 && prob <=2,
|
||||
"Unrecognized problem type: " << prob);
|
||||
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution.
|
||||
for (int l = 0; l < ser_ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6a. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 6b. Extract a submesh covering a portion of the boundary
|
||||
ParSubMesh pmesh_port(ParSubMesh::CreateFromBoundary(pmesh, port_bc_attr));
|
||||
|
||||
// 7a. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange, Nedelec, or Raviart-Thomas finite elements
|
||||
// of the specified order.
|
||||
if (dim == 1 && prob != 0 )
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Switching to problem type 0, H1 basis functions, "
|
||||
<< "for 1 dimensional mesh." << endl;
|
||||
}
|
||||
prob = 0;
|
||||
}
|
||||
|
||||
FiniteElementCollection *fec = NULL;
|
||||
switch (prob)
|
||||
{
|
||||
case 0: fec = new H1_FECollection(order, dim); break;
|
||||
case 1: fec = new ND_FECollection(order, dim); break;
|
||||
case 2: fec = new RT_FECollection(order - 1, dim); break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
ParFiniteElementSpace fespace(&pmesh, fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7b. Define a parallel finite element space on the sub-mesh. Here we
|
||||
// use continuous Lagrange, Nedelec, or L2 finite elements of
|
||||
// the specified order.
|
||||
FiniteElementCollection *fec_port = NULL;
|
||||
switch (prob)
|
||||
{
|
||||
case 0: fec_port = new H1_FECollection(order, dim-1); break;
|
||||
case 1:
|
||||
if (dim == 3)
|
||||
{
|
||||
fec_port = new ND_FECollection(order, dim-1);
|
||||
}
|
||||
else
|
||||
{
|
||||
fec_port = new L2_FECollection(order - 1, dim-1,
|
||||
BasisType::GaussLegendre,
|
||||
FiniteElement::INTEGRAL);
|
||||
}
|
||||
break;
|
||||
case 2: fec_port = new L2_FECollection(order - 1, dim-1,
|
||||
BasisType::GaussLegendre,
|
||||
FiniteElement::INTEGRAL); break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
ParFiniteElementSpace fespace_port(&pmesh_port, fec_port);
|
||||
HYPRE_BigInt size_port = fespace_port.GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of finite element port BC unknowns: " << size_port
|
||||
<< endl;
|
||||
}
|
||||
|
||||
// 8a. Define a parallel grid function on the SubMesh which will contain
|
||||
// the field to be applied as a port boundary condition.
|
||||
ParGridFunction port_bc(&fespace_port);
|
||||
port_bc = 0.0;
|
||||
|
||||
SetPortBC(prob, dim, mode, port_bc);
|
||||
|
||||
// 8b. Save the SubMesh and associated port boundary condition in parallel.
|
||||
// This output can be viewed later using GLVis:
|
||||
// "glvis -np <np> -m port_mesh -g port_mode"
|
||||
{
|
||||
ostringstream mesh_name, port_name;
|
||||
mesh_name << "port_mesh." << setfill('0') << setw(6) << myid;
|
||||
port_name << "port_mode." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh_port.Print(mesh_ofs);
|
||||
|
||||
ofstream port_ofs(port_name.str().c_str());
|
||||
port_ofs.precision(8);
|
||||
port_bc.Save(port_ofs);
|
||||
}
|
||||
// 8c. Send the port bc, computed on the SubMesh, to a GLVis server.
|
||||
if (visualization && dim == 3)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream port_sock(vishost, visport);
|
||||
port_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
port_sock.precision(8);
|
||||
port_sock << "solution\n" << pmesh_port << port_bc
|
||||
<< "window_title 'Port BC'"
|
||||
<< "window_geometry 0 0 400 350" << flush;
|
||||
}
|
||||
|
||||
// 9. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// using an eigenmode of the appropriate type computed on the SubMesh.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 10. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
ParComplexLinearForm b(&fespace, conv);
|
||||
b.Vector::operator=(0.0);
|
||||
|
||||
// 11a. Define the solution vector u as a parallel complex finite element
|
||||
// grid function corresponding to fespace. Initialize u to equal zero.
|
||||
ParComplexGridFunction u(&fespace);
|
||||
u = 0.0;
|
||||
pmesh_port.Transfer(port_bc, u.real());
|
||||
|
||||
// 11b. Send the transferred port bc field to a GLVis server.
|
||||
{
|
||||
ParGridFunction full_bc(&fespace);
|
||||
ParTransferMap port_to_full(port_bc, full_bc);
|
||||
|
||||
full_bc = 0.0;
|
||||
port_to_full.Transfer(port_bc, full_bc);
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream full_sock(vishost, visport);
|
||||
full_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
full_sock.precision(8);
|
||||
full_sock << "solution\n" << pmesh << full_bc
|
||||
<< "window_title 'Transferred BC'"
|
||||
<< "window_geometry 400 0 400 350"<< flush;
|
||||
}
|
||||
}
|
||||
|
||||
// 12. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
// space corresponding to the damped harmonic oscillator operator of the
|
||||
// appropriate type:
|
||||
//
|
||||
// 0) A scalar H1 field
|
||||
// -Div(a Grad) - omega^2 b + i omega c
|
||||
//
|
||||
// 1) A vector H(Curl) field
|
||||
// Curl(a Curl) - omega^2 b + i omega c
|
||||
//
|
||||
// 2) A vector H(Div) field
|
||||
// -Grad(a Div) - omega^2 b + i omega c
|
||||
//
|
||||
ConstantCoefficient stiffnessCoef(1.0/mu_);
|
||||
ConstantCoefficient massCoef(-omega * omega * epsilon_);
|
||||
ConstantCoefficient lossCoef(omega * sigma_);
|
||||
ConstantCoefficient negMassCoef(omega * omega * epsilon_);
|
||||
|
||||
ParSesquilinearForm a(&fespace, conv);
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a.AddDomainIntegrator(new MassIntegrator(massCoef),
|
||||
new MassIntegrator(lossCoef));
|
||||
break;
|
||||
case 1:
|
||||
a.AddDomainIntegrator(new CurlCurlIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
|
||||
new VectorFEMassIntegrator(lossCoef));
|
||||
break;
|
||||
case 2:
|
||||
a.AddDomainIntegrator(new DivDivIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
|
||||
new VectorFEMassIntegrator(lossCoef));
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 13. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, etc.
|
||||
a.Assemble();
|
||||
|
||||
OperatorHandle A;
|
||||
Vector B, U;
|
||||
|
||||
a.FormLinearSystem(ess_tdof_list, u, b, A, U, B);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Size of linear system: "
|
||||
<< 2 * size << endl << endl;
|
||||
}
|
||||
|
||||
if (!slu_solver)
|
||||
{
|
||||
// 14a. Set up the parallel bilinear form for the preconditioner
|
||||
// corresponding to the appropriate operator
|
||||
//
|
||||
// 0) A scalar H1 field
|
||||
// -Div(a Grad) - omega^2 b + i omega c
|
||||
//
|
||||
// 1) A vector H(Curl) field
|
||||
// Curl(a Curl) + omega^2 b + i omega c
|
||||
//
|
||||
// 2) A vector H(Div) field
|
||||
// -Grad(a Div) - omega^2 b + i omega c
|
||||
ParBilinearForm pcOp(&fespace);
|
||||
if (pa) { pcOp.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
pcOp.AddDomainIntegrator(new DiffusionIntegrator(stiffnessCoef));
|
||||
pcOp.AddDomainIntegrator(new MassIntegrator(massCoef));
|
||||
pcOp.AddDomainIntegrator(new MassIntegrator(lossCoef));
|
||||
break;
|
||||
case 1:
|
||||
pcOp.AddDomainIntegrator(new CurlCurlIntegrator(stiffnessCoef));
|
||||
pcOp.AddDomainIntegrator(new VectorFEMassIntegrator(negMassCoef));
|
||||
pcOp.AddDomainIntegrator(new VectorFEMassIntegrator(lossCoef));
|
||||
break;
|
||||
case 2:
|
||||
pcOp.AddDomainIntegrator(new DivDivIntegrator(stiffnessCoef));
|
||||
pcOp.AddDomainIntegrator(new VectorFEMassIntegrator(massCoef));
|
||||
pcOp.AddDomainIntegrator(new VectorFEMassIntegrator(lossCoef));
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
pcOp.Assemble();
|
||||
|
||||
// 14b. Define and apply a parallel FGMRES solver for AU=B with a block
|
||||
// diagonal preconditioner based on the appropriate multigrid
|
||||
// preconditioner from hypre.
|
||||
Array<int> blockTrueOffsets;
|
||||
blockTrueOffsets.SetSize(3);
|
||||
blockTrueOffsets[0] = 0;
|
||||
blockTrueOffsets[1] = A->Height() / 2;
|
||||
blockTrueOffsets[2] = A->Height() / 2;
|
||||
blockTrueOffsets.PartialSum();
|
||||
|
||||
BlockDiagonalPreconditioner BDP(blockTrueOffsets);
|
||||
|
||||
Operator * pc_r = NULL;
|
||||
Operator * pc_i = NULL;
|
||||
|
||||
if (pa)
|
||||
{
|
||||
pc_r = new OperatorJacobiSmoother(pcOp, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorHandle PCOp;
|
||||
pcOp.FormSystemMatrix(ess_tdof_list, PCOp);
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
pc_r = new HypreBoomerAMG(*PCOp.As<HypreParMatrix>());
|
||||
break;
|
||||
case 1:
|
||||
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), &fespace);
|
||||
break;
|
||||
case 2:
|
||||
if (dim == 2 )
|
||||
{
|
||||
pc_r = new HypreAMS(*PCOp.As<HypreParMatrix>(), &fespace);
|
||||
}
|
||||
else
|
||||
{
|
||||
pc_r = new HypreADS(*PCOp.As<HypreParMatrix>(), &fespace);
|
||||
}
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
}
|
||||
pc_i = new ScaledOperator(pc_r,
|
||||
(conv == ComplexOperator::HERMITIAN) ?
|
||||
-1.0:1.0);
|
||||
|
||||
BDP.SetDiagonalBlock(0, pc_r);
|
||||
BDP.SetDiagonalBlock(1, pc_i);
|
||||
BDP.owns_blocks = 1;
|
||||
|
||||
FGMRESSolver fgmres(MPI_COMM_WORLD);
|
||||
fgmres.SetPreconditioner(BDP);
|
||||
fgmres.SetOperator(*A.Ptr());
|
||||
fgmres.SetRelTol(1e-6);
|
||||
fgmres.SetMaxIter(1000);
|
||||
fgmres.SetPrintLevel(1);
|
||||
fgmres.Mult(B, U);
|
||||
}
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
else
|
||||
{
|
||||
// 14. Solve using a direct solver
|
||||
// Transform to monolithic HypreParMatrix
|
||||
HypreParMatrix *A_hyp = A.As<ComplexHypreParMatrix>()->GetSystemMatrix();
|
||||
SuperLURowLocMatrix SA(*A_hyp);
|
||||
SuperLUSolver superlu(MPI_COMM_WORLD);
|
||||
superlu.SetPrintStatistics(true);
|
||||
superlu.SetSymmetricPattern(false);
|
||||
superlu.SetColumnPermutation(superlu::PARMETIS);
|
||||
superlu.SetOperator(SA);
|
||||
superlu.Mult(B, U);
|
||||
delete A_hyp;
|
||||
}
|
||||
#endif
|
||||
|
||||
// 15. Recover the parallel grid function corresponding to U. This is the
|
||||
// local finite element solution on each processor.
|
||||
a.RecoverFEMSolution(U, b, u);
|
||||
|
||||
// 16. Save the refined mesh and the solution in parallel. This output can be
|
||||
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol_r" or
|
||||
// "glvis -np <np> -m mesh -g sol_i".
|
||||
{
|
||||
ostringstream mesh_name, sol_r_name, sol_i_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_r_name << "sol_r." << setfill('0') << setw(6) << myid;
|
||||
sol_i_name << "sol_i." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh.Print(mesh_ofs);
|
||||
|
||||
ofstream sol_r_ofs(sol_r_name.str().c_str());
|
||||
ofstream sol_i_ofs(sol_i_name.str().c_str());
|
||||
sol_r_ofs.precision(8);
|
||||
sol_i_ofs.precision(8);
|
||||
u.real().Save(sol_r_ofs);
|
||||
u.imag().Save(sol_i_ofs);
|
||||
}
|
||||
|
||||
// 17. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_r << "solution\n" << pmesh << u.real()
|
||||
<< "window_title 'Solution: Real Part'"
|
||||
<< "window_geometry 800 0 400 350" << flush;
|
||||
|
||||
MPI_Barrier(MPI_COMM_WORLD);
|
||||
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << pmesh << u.imag()
|
||||
<< "window_title 'Solution: Imaginary Part'"
|
||||
<< "window_geometry 1200 0 400 350" << flush;
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
ParGridFunction u_t(&fespace);
|
||||
u_t = u.real();
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << pmesh << u_t
|
||||
<< "window_title 'Harmonic Solution (t = 0.0 T)'"
|
||||
<< "window_geometry 0 432 600 450"
|
||||
<< "pause\n" << flush;
|
||||
if (myid == 0)
|
||||
cout << "GLVis visualization paused."
|
||||
<< " Press space (in the GLVis window) to resume it.\n";
|
||||
int num_frames = 32;
|
||||
int i = 0;
|
||||
while (sol_sock)
|
||||
{
|
||||
double t = (double)(i % num_frames) / num_frames;
|
||||
ostringstream oss;
|
||||
oss << "Harmonic Solution (t = " << t << " T)";
|
||||
|
||||
add(cos( 2.0 * M_PI * t), u.real(),
|
||||
sin(-2.0 * M_PI * t), u.imag(), u_t);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "solution\n" << pmesh << u_t
|
||||
<< "window_title '" << oss.str() << "'" << flush;
|
||||
i++;
|
||||
}
|
||||
}
|
||||
|
||||
// 18. Free the used memory.
|
||||
delete fec_port;
|
||||
delete fec;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
/**
|
||||
Solves the eigenvalue problem -Div(Grad x) = lambda x with homogeneous
|
||||
Dirichlet boundary conditions on the boundary of the domain. Returns mode
|
||||
number "mode" (counting from zero) in the ParGridFunction "x".
|
||||
*/
|
||||
void ScalarWaveGuide(int mode, ParGridFunction &x)
|
||||
{
|
||||
int nev = std::max(mode + 2, 5);
|
||||
int seed = 75;
|
||||
|
||||
ParFiniteElementSpace &fespace = *x.ParFESpace();
|
||||
ParMesh &pmesh = *fespace.GetParMesh();
|
||||
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
}
|
||||
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator);
|
||||
a.Assemble();
|
||||
a.EliminateEssentialBCDiag(ess_bdr, 1.0);
|
||||
a.Finalize();
|
||||
|
||||
ParBilinearForm m(&fespace);
|
||||
m.AddDomainIntegrator(new MassIntegrator);
|
||||
m.Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m.Finalize();
|
||||
|
||||
HypreParMatrix *A = a.ParallelAssemble();
|
||||
HypreParMatrix *M = m.ParallelAssemble();
|
||||
|
||||
HypreBoomerAMG amg(*A);
|
||||
amg.SetPrintLevel(0);
|
||||
|
||||
HypreLOBPCG lobpcg(MPI_COMM_WORLD);
|
||||
lobpcg.SetNumModes(nev);
|
||||
lobpcg.SetRandomSeed(seed);
|
||||
lobpcg.SetPreconditioner(amg);
|
||||
lobpcg.SetMaxIter(200);
|
||||
lobpcg.SetTol(1e-8);
|
||||
lobpcg.SetPrecondUsageMode(1);
|
||||
lobpcg.SetPrintLevel(1);
|
||||
lobpcg.SetMassMatrix(*M);
|
||||
lobpcg.SetOperator(*A);
|
||||
lobpcg.Solve();
|
||||
|
||||
x = lobpcg.GetEigenvector(mode);
|
||||
|
||||
delete A;
|
||||
delete M;
|
||||
}
|
||||
|
||||
/**
|
||||
Solves the eigenvalue problem -Curl(Curl x) = lambda x with homogeneous
|
||||
Dirichlet boundary conditions, on the tangential component of x, on the
|
||||
boundary of the domain. Returns mode number "mode" (counting from zero) in
|
||||
the ParGridFunction "x".
|
||||
*/
|
||||
void VectorWaveGuide(int mode, ParGridFunction &x)
|
||||
{
|
||||
int nev = std::max(mode + 2, 5);
|
||||
|
||||
ParFiniteElementSpace &fespace = *x.ParFESpace();
|
||||
ParMesh &pmesh = *fespace.GetParMesh();
|
||||
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
}
|
||||
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new CurlCurlIntegrator);
|
||||
a.Assemble();
|
||||
a.EliminateEssentialBCDiag(ess_bdr, 1.0);
|
||||
a.Finalize();
|
||||
|
||||
ParBilinearForm m(&fespace);
|
||||
m.AddDomainIntegrator(new VectorFEMassIntegrator);
|
||||
m.Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m.Finalize();
|
||||
|
||||
HypreParMatrix *A = a.ParallelAssemble();
|
||||
HypreParMatrix *M = m.ParallelAssemble();
|
||||
|
||||
HypreAMS ams(*A,&fespace);
|
||||
ams.SetPrintLevel(0);
|
||||
ams.SetSingularProblem();
|
||||
|
||||
HypreAME ame(MPI_COMM_WORLD);
|
||||
ame.SetNumModes(nev);
|
||||
ame.SetPreconditioner(ams);
|
||||
ame.SetMaxIter(100);
|
||||
ame.SetTol(1e-8);
|
||||
ame.SetPrintLevel(1);
|
||||
ame.SetMassMatrix(*M);
|
||||
ame.SetOperator(*A);
|
||||
ame.Solve();
|
||||
|
||||
x = ame.GetEigenvector(mode);
|
||||
|
||||
delete A;
|
||||
delete M;
|
||||
}
|
||||
|
||||
/**
|
||||
Solves the eigenvalue problem -Div(Grad x) = lambda x with homogeneous
|
||||
Neumann boundary conditions on the boundary of the domain. Returns mode
|
||||
number "mode" (counting from zero) in the ParGridFunction "x_l2". Note that
|
||||
mode 0 is a constant field so higher mode numbers are often more
|
||||
interesting. The eigenmode is solved using continuous H1 basis of the
|
||||
appropriate order and then projected onto the L2 basis and returned.
|
||||
*/
|
||||
void PseudoScalarWaveGuide(int mode, ParGridFunction &x_l2)
|
||||
{
|
||||
int nev = std::max(mode + 2, 5);
|
||||
int seed = 75;
|
||||
|
||||
ParFiniteElementSpace &fespace_l2 = *x_l2.ParFESpace();
|
||||
ParMesh &pmesh = *fespace_l2.GetParMesh();
|
||||
int order_l2 = fespace_l2.FEColl()->GetOrder();
|
||||
|
||||
H1_FECollection fec(order_l2+1, pmesh.Dimension());
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
ParGridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
GridFunctionCoefficient xCoef(&x);
|
||||
|
||||
if (mode == 0)
|
||||
{
|
||||
x = 1.0;
|
||||
x_l2.ProjectCoefficient(xCoef);
|
||||
return;
|
||||
}
|
||||
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator);
|
||||
a.AddDomainIntegrator(new MassIntegrator); // Shift eigenvalues by 1
|
||||
a.Assemble();
|
||||
a.Finalize();
|
||||
|
||||
ParBilinearForm m(&fespace);
|
||||
m.AddDomainIntegrator(new MassIntegrator);
|
||||
m.Assemble();
|
||||
m.Finalize();
|
||||
|
||||
HypreParMatrix *A = a.ParallelAssemble();
|
||||
HypreParMatrix *M = m.ParallelAssemble();
|
||||
|
||||
HypreBoomerAMG amg(*A);
|
||||
amg.SetPrintLevel(0);
|
||||
|
||||
HypreLOBPCG lobpcg(MPI_COMM_WORLD);
|
||||
lobpcg.SetNumModes(nev);
|
||||
lobpcg.SetRandomSeed(seed);
|
||||
lobpcg.SetPreconditioner(amg);
|
||||
lobpcg.SetMaxIter(200);
|
||||
lobpcg.SetTol(1e-8);
|
||||
lobpcg.SetPrecondUsageMode(1);
|
||||
lobpcg.SetPrintLevel(1);
|
||||
lobpcg.SetMassMatrix(*M);
|
||||
lobpcg.SetOperator(*A);
|
||||
lobpcg.Solve();
|
||||
|
||||
x = lobpcg.GetEigenvector(mode);
|
||||
|
||||
x_l2.ProjectCoefficient(xCoef);
|
||||
|
||||
delete A;
|
||||
delete M;
|
||||
}
|
||||
|
||||
// Compute eigenmode "mode" of either a Dirichlet or Neumann Laplacian or of a
|
||||
// Dirichlet curl curl operator based on the problem type and dimension of the
|
||||
// domain.
|
||||
void SetPortBC(int prob, int dim, int mode, ParGridFunction &port_bc)
|
||||
{
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
ScalarWaveGuide(mode, port_bc);
|
||||
break;
|
||||
case 1:
|
||||
if (dim == 3)
|
||||
{
|
||||
VectorWaveGuide(mode, port_bc);
|
||||
}
|
||||
else
|
||||
{
|
||||
PseudoScalarWaveGuide(mode, port_bc);
|
||||
}
|
||||
break;
|
||||
case 2:
|
||||
PseudoScalarWaveGuide(mode, port_bc);
|
||||
break;
|
||||
}
|
||||
}
|
||||
@@ -1,459 +0,0 @@
|
||||
// MFEM Example 36
|
||||
//
|
||||
// Compile with: make ex36
|
||||
//
|
||||
// Sample runs: ex36 -o 2
|
||||
// ex36 -o 2 -r 4
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve the
|
||||
// bound-constrained energy minimization problem
|
||||
//
|
||||
// minimize ||∇u||² subject to u ≥ ϕ in H¹₀.
|
||||
//
|
||||
// This is known as the obstacle problem, and it is a simple
|
||||
// mathematical model for contact mechanics.
|
||||
//
|
||||
// In this example, the obstacle ϕ is a half-sphere centered
|
||||
// at the origin of a circular domain Ω. After solving to a
|
||||
// specified tolerance, the numerical solution is compared to
|
||||
// a closed-form exact solution to assess accuracy.
|
||||
//
|
||||
// The problem is discretized and solved using the proximal
|
||||
// Galerkin finite element method, introduced by Keith and
|
||||
// Surowiec [1].
|
||||
//
|
||||
// This example highlights the ability of MFEM to deliver high-
|
||||
// order solutions to variation inequality problems and
|
||||
// showcases how to set up and solve nonlinear mixed methods.
|
||||
//
|
||||
// [1] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double spherical_obstacle(const Vector &pt);
|
||||
double exact_solution_obstacle(const Vector &pt);
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad);
|
||||
|
||||
class LogarithmGridFunctionCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *u; // grid function
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
|
||||
public:
|
||||
LogarithmGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=-36)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
class ExponentialGridFunctionCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *u;
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
double max_val;
|
||||
|
||||
public:
|
||||
ExponentialGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=0.0, double max_val_=1e6)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_), max_val(max_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
int order = 1;
|
||||
int max_it = 10;
|
||||
int ref_levels = 3;
|
||||
double alpha = 1.0;
|
||||
double tol = 1e-5;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&ref_levels, "-r", "--refs",
|
||||
"Number of h-refinements.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of iterations");
|
||||
args.AddOption(&tol, "-tol", "--tol",
|
||||
"Stopping criteria based on the difference between"
|
||||
"successive solution updates");
|
||||
args.AddOption(&alpha, "-step", "--step",
|
||||
"Step size alpha");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the mesh file.
|
||||
const char *mesh_file = "../data/disc-nurbs.mesh";
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 3. Postprocess the mesh.
|
||||
// 3A. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3B. Interpolate the geometry after refinement to control geometry error.
|
||||
// NOTE: Minimum second-order interpolation is used to improve the accuracy.
|
||||
int curvature_order = max(order,2);
|
||||
mesh.SetCurvature(curvature_order);
|
||||
|
||||
// 3C. Rescale the domain to a unit circle (radius = 1).
|
||||
GridFunction *nodes = mesh.GetNodes();
|
||||
double scale = 2*sqrt(2);
|
||||
*nodes /= scale;
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
H1_FECollection H1fec(order+1, dim);
|
||||
FiniteElementSpace H1fes(&mesh, &H1fec);
|
||||
|
||||
L2_FECollection L2fec(order-1, dim);
|
||||
FiniteElementSpace L2fes(&mesh, &L2fec);
|
||||
|
||||
cout << "Number of H1 finite element unknowns: "
|
||||
<< H1fes.GetTrueVSize() << endl;
|
||||
cout << "Number of L2 finite element unknowns: "
|
||||
<< L2fes.GetTrueVSize() << endl;
|
||||
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = H1fes.GetVSize();
|
||||
offsets[2] = L2fes.GetVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
BlockVector x(offsets), rhs(offsets);
|
||||
x = 0.0; rhs = 0.0;
|
||||
|
||||
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
Array<int> ess_bdr;
|
||||
if (mesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(mesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
}
|
||||
|
||||
// 6. Define an initial guess for the solution.
|
||||
auto IC_func = [](const Vector &x)
|
||||
{
|
||||
double r0 = 1.0;
|
||||
double rr = 0.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
rr += x(i)*x(i);
|
||||
}
|
||||
return r0*r0 - rr;
|
||||
};
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
|
||||
// 7. Define the solution vectors as a finite element grid functions
|
||||
// corresponding to the fespaces.
|
||||
GridFunction u_gf, delta_psi_gf;
|
||||
|
||||
u_gf.MakeRef(&H1fes,x,offsets[0]);
|
||||
delta_psi_gf.MakeRef(&L2fes,x,offsets[1]);
|
||||
delta_psi_gf = 0.0;
|
||||
|
||||
GridFunction u_old_gf(&H1fes);
|
||||
GridFunction psi_old_gf(&L2fes);
|
||||
GridFunction psi_gf(&L2fes);
|
||||
u_old_gf = 0.0;
|
||||
psi_old_gf = 0.0;
|
||||
|
||||
// 8. Define the function coefficients for the solution and use them to
|
||||
// initialize the initial guess
|
||||
FunctionCoefficient exact_coef(exact_solution_obstacle);
|
||||
VectorFunctionCoefficient exact_grad_coef(dim,exact_solution_gradient_obstacle);
|
||||
FunctionCoefficient IC_coef(IC_func);
|
||||
ConstantCoefficient f(0.0);
|
||||
FunctionCoefficient obstacle(spherical_obstacle);
|
||||
u_gf.ProjectCoefficient(IC_coef);
|
||||
u_old_gf = u_gf;
|
||||
|
||||
// 9. Initialize the slack variable ψₕ = ln(uₕ)
|
||||
LogarithmGridFunctionCoefficient ln_u(u_gf, obstacle);
|
||||
psi_gf.ProjectCoefficient(ln_u);
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock;
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock.open(vishost,visport);
|
||||
sol_sock.precision(8);
|
||||
}
|
||||
|
||||
// 10. Iterate
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
double increment_u = 0.1;
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
GridFunction u_tmp(&H1fes);
|
||||
u_tmp = u_old_gf;
|
||||
|
||||
mfem::out << "\nOUTER ITERATION " << k+1 << endl;
|
||||
|
||||
int j;
|
||||
for ( j = 0; j < 10; j++)
|
||||
{
|
||||
total_iterations++;
|
||||
|
||||
ConstantCoefficient alpha_cf(alpha);
|
||||
|
||||
LinearForm b0,b1;
|
||||
b0.Update(&H1fes,rhs.GetBlock(0),0);
|
||||
b1.Update(&L2fes,rhs.GetBlock(1),0);
|
||||
|
||||
ExponentialGridFunctionCoefficient exp_psi(psi_gf, zero);
|
||||
ProductCoefficient neg_exp_psi(-1.0,exp_psi);
|
||||
GradientGridFunctionCoefficient grad_u_old(&u_old_gf);
|
||||
ProductCoefficient alpha_f(alpha, f);
|
||||
GridFunctionCoefficient psi_cf(&psi_gf);
|
||||
GridFunctionCoefficient psi_old_cf(&psi_old_gf);
|
||||
SumCoefficient psi_old_minus_psi(psi_old_cf, psi_cf, 1.0, -1.0);
|
||||
|
||||
b0.AddDomainIntegrator(new DomainLFIntegrator(alpha_f));
|
||||
b0.AddDomainIntegrator(new DomainLFIntegrator(psi_old_minus_psi));
|
||||
b0.Assemble();
|
||||
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(exp_psi));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(obstacle));
|
||||
b1.Assemble();
|
||||
|
||||
BilinearForm a00(&H1fes);
|
||||
a00.SetDiagonalPolicy(mfem::Operator::DIAG_ONE);
|
||||
a00.AddDomainIntegrator(new DiffusionIntegrator(alpha_cf));
|
||||
a00.Assemble();
|
||||
a00.EliminateEssentialBC(ess_bdr,x.GetBlock(0),rhs.GetBlock(0),
|
||||
mfem::Operator::DIAG_ONE);
|
||||
a00.Finalize();
|
||||
SparseMatrix &A00 = a00.SpMat();
|
||||
|
||||
MixedBilinearForm a10(&H1fes,&L2fes);
|
||||
a10.AddDomainIntegrator(new MixedScalarMassIntegrator());
|
||||
a10.Assemble();
|
||||
a10.EliminateTrialDofs(ess_bdr, x.GetBlock(0), rhs.GetBlock(1));
|
||||
a10.Finalize();
|
||||
SparseMatrix &A10 = a10.SpMat();
|
||||
|
||||
SparseMatrix *A01 = Transpose(A10);
|
||||
|
||||
BilinearForm a11(&L2fes);
|
||||
a11.AddDomainIntegrator(new MassIntegrator(neg_exp_psi));
|
||||
// NOTE: Shift the spectrum of the Hessian matrix for additional
|
||||
// stability (Quasi-Newton).
|
||||
ConstantCoefficient eps_cf(-1e-6);
|
||||
if (order == 1)
|
||||
{
|
||||
// NOTE: ∇ₕuₕ = 0 for constant functions.
|
||||
// Therefore, we use the mass matrix to shift the spectrum
|
||||
a11.AddDomainIntegrator(new MassIntegrator(eps_cf));
|
||||
}
|
||||
else
|
||||
{
|
||||
a11.AddDomainIntegrator(new DiffusionIntegrator(eps_cf));
|
||||
}
|
||||
a11.Assemble();
|
||||
a11.Finalize();
|
||||
SparseMatrix &A11 = a11.SpMat();
|
||||
|
||||
BlockOperator A(offsets);
|
||||
A.SetBlock(0,0,&A00);
|
||||
A.SetBlock(1,0,&A10);
|
||||
A.SetBlock(0,1,A01);
|
||||
A.SetBlock(1,1,&A11);
|
||||
|
||||
BlockDiagonalPreconditioner prec(offsets);
|
||||
prec.SetDiagonalBlock(0,new GSSmoother(A00));
|
||||
prec.SetDiagonalBlock(1,new GSSmoother(A11));
|
||||
prec.owns_blocks = 1;
|
||||
|
||||
GMRES(A,prec,rhs,x,0,10000,500,1e-12,0.0);
|
||||
|
||||
u_gf.MakeRef(&H1fes, x.GetBlock(0), 0);
|
||||
delta_psi_gf.MakeRef(&L2fes, x.GetBlock(1), 0);
|
||||
|
||||
u_tmp -= u_gf;
|
||||
double Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
double gamma = 1.0;
|
||||
delta_psi_gf *= gamma;
|
||||
psi_gf += delta_psi_gf;
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock << "solution\n" << mesh << u_gf << "window_title 'Discrete solution'"
|
||||
<< flush;
|
||||
mfem::out << "Newton_update_size = " << Newton_update_size << endl;
|
||||
}
|
||||
|
||||
delete A01;
|
||||
|
||||
if (Newton_update_size < increment_u)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
u_tmp = u_gf;
|
||||
u_tmp -= u_old_gf;
|
||||
increment_u = u_tmp.ComputeL2Error(zero);
|
||||
|
||||
mfem::out << "Number of Newton iterations = " << j+1 << endl;
|
||||
mfem::out << "Increment (|| uₕ - uₕ_prvs||) = " << increment_u << endl;
|
||||
|
||||
u_old_gf = u_gf;
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
if (increment_u < tol || k == max_it-1)
|
||||
{
|
||||
break;
|
||||
}
|
||||
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
mfem::out << "H1-error (|| u - uₕᵏ||) = " << H1_error << endl;
|
||||
|
||||
}
|
||||
|
||||
mfem::out << "\n Outer iterations: " << k+1
|
||||
<< "\n Total iterations: " << total_iterations
|
||||
<< "\n Total dofs: " << H1fes.GetTrueVSize() + L2fes.GetTrueVSize()
|
||||
<< endl;
|
||||
|
||||
// 11. Exact solution.
|
||||
if (visualization)
|
||||
{
|
||||
socketstream err_sock(vishost, visport);
|
||||
err_sock.precision(8);
|
||||
|
||||
GridFunction error_gf(&H1fes);
|
||||
error_gf.ProjectCoefficient(exact_coef);
|
||||
error_gf -= u_gf;
|
||||
|
||||
err_sock << "solution\n" << mesh << error_gf << "window_title 'Error'" <<
|
||||
flush;
|
||||
}
|
||||
|
||||
{
|
||||
double L2_error = u_gf.ComputeL2Error(exact_coef);
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
|
||||
ExponentialGridFunctionCoefficient u_alt_cf(psi_gf,obstacle);
|
||||
GridFunction u_alt_gf(&L2fes);
|
||||
u_alt_gf.ProjectCoefficient(u_alt_cf);
|
||||
double L2_error_alt = u_alt_gf.ComputeL2Error(exact_coef);
|
||||
|
||||
mfem::out << "\n Final L2-error (|| u - uₕ||) = " << L2_error <<
|
||||
endl;
|
||||
mfem::out << " Final H1-error (|| u - uₕ||) = " << H1_error << endl;
|
||||
mfem::out << " Final L2-error (|| u - ϕ - exp(ψₕ)||) = " << L2_error_alt <<
|
||||
endl;
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
double LogarithmGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip) - obstacle->Eval(T, ip);
|
||||
return max(min_val, log(val));
|
||||
}
|
||||
|
||||
double ExponentialGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip);
|
||||
return min(max_val, max(min_val, exp(val) + obstacle->Eval(T, ip)));
|
||||
}
|
||||
|
||||
double spherical_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double beta = 0.9;
|
||||
|
||||
double b = r0*beta;
|
||||
double tmp = sqrt(r0*r0 - b*b);
|
||||
double B = tmp + b*b/tmp;
|
||||
double C = -b/tmp;
|
||||
|
||||
if (r > b)
|
||||
{
|
||||
return B + r * C;
|
||||
}
|
||||
else
|
||||
{
|
||||
return sqrt(r0*r0 - r*r);
|
||||
}
|
||||
}
|
||||
|
||||
double exact_solution_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
return A * log(r);
|
||||
}
|
||||
else
|
||||
{
|
||||
return sqrt(r0*r0-r*r);
|
||||
}
|
||||
}
|
||||
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
grad(0) = A * x / (r*r);
|
||||
grad(1) = A * y / (r*r);
|
||||
}
|
||||
else
|
||||
{
|
||||
grad(0) = - x / sqrt( r0*r0 - r*r );
|
||||
grad(1) = - y / sqrt( r0*r0 - r*r );
|
||||
}
|
||||
}
|
||||
@@ -1,523 +0,0 @@
|
||||
// MFEM Example 36 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex36p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex36p -o 2
|
||||
// mpirun -np 4 ex36p -o 2 -r 4
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve the
|
||||
// bound-constrained energy minimization problem
|
||||
//
|
||||
// minimize ||∇u||² subject to u ≥ ϕ in H¹₀.
|
||||
//
|
||||
// This is known as the obstacle problem, and it is a simple
|
||||
// mathematical model for contact mechanics.
|
||||
//
|
||||
// In this example, the obstacle ϕ is a half-sphere centered
|
||||
// at the origin of a circular domain Ω. After solving to a
|
||||
// specified tolerance, the numerical solution is compared to
|
||||
// a closed-form exact solution to assess accuracy.
|
||||
//
|
||||
// The problem is discretized and solved using the proximal
|
||||
// Galerkin finite element method, introduced by Keith and
|
||||
// Surowiec [1].
|
||||
//
|
||||
// This example highlights the ability of MFEM to deliver high-
|
||||
// order solutions to variation inequality problems and
|
||||
// showcases how to set up and solve nonlinear mixed methods.
|
||||
//
|
||||
// [1] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double spherical_obstacle(const Vector &pt);
|
||||
double exact_solution_obstacle(const Vector &pt);
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad);
|
||||
|
||||
class LogarithmGridFunctionCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *u; // grid function
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
|
||||
public:
|
||||
LogarithmGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=-36)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
class ExponentialGridFunctionCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *u;
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
double max_val;
|
||||
|
||||
public:
|
||||
ExponentialGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=0.0, double max_val_=1e6)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_), max_val(max_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 0. Initialize MPI and HYPRE.
|
||||
Mpi::Init();
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 1. Parse command-line options.
|
||||
int order = 1;
|
||||
int max_it = 10;
|
||||
int ref_levels = 3;
|
||||
double alpha = 1.0;
|
||||
double tol = 1e-5;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&ref_levels, "-r", "--refs",
|
||||
"Number of h-refinements.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of iterations");
|
||||
args.AddOption(&tol, "-tol", "--tol",
|
||||
"Stopping criteria based on the difference between"
|
||||
"successive solution updates");
|
||||
args.AddOption(&alpha, "-step", "--step",
|
||||
"Step size alpha");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 2. Read the mesh from the mesh file.
|
||||
const char *mesh_file = "../data/disc-nurbs.mesh";
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 3. Postprocess the mesh.
|
||||
// 3A. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3B. Interpolate the geometry after refinement to control geometry error.
|
||||
// NOTE: Minimum second-order interpolation is used to improve the accuracy.
|
||||
int curvature_order = max(order,2);
|
||||
mesh.SetCurvature(curvature_order);
|
||||
|
||||
// 3C. Rescale the domain to a unit circle (radius = 1).
|
||||
GridFunction *nodes = mesh.GetNodes();
|
||||
double scale = 2*sqrt(2);
|
||||
*nodes /= scale;
|
||||
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
H1_FECollection H1fec(order+1, dim);
|
||||
ParFiniteElementSpace H1fes(&pmesh, &H1fec);
|
||||
|
||||
L2_FECollection L2fec(order-1, dim);
|
||||
ParFiniteElementSpace L2fes(&pmesh, &L2fec);
|
||||
|
||||
int num_dofs_H1 = H1fes.GetTrueVSize();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &num_dofs_H1, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
|
||||
int num_dofs_L2 = L2fes.GetTrueVSize();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &num_dofs_L2, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of H1 finite element unknowns: "
|
||||
<< num_dofs_H1 << endl;
|
||||
cout << "Number of L2 finite element unknowns: "
|
||||
<< num_dofs_L2 << endl;
|
||||
}
|
||||
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = H1fes.GetVSize();
|
||||
offsets[2] = L2fes.GetVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
Array<int> toffsets(3);
|
||||
toffsets[0] = 0;
|
||||
toffsets[1] = H1fes.GetTrueVSize();
|
||||
toffsets[2] = L2fes.GetTrueVSize();
|
||||
toffsets.PartialSum();
|
||||
|
||||
BlockVector x(offsets), rhs(offsets);
|
||||
x = 0.0; rhs = 0.0;
|
||||
|
||||
BlockVector tx(toffsets), trhs(toffsets);
|
||||
tx = 0.0; trhs = 0.0;
|
||||
|
||||
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
Array<int> empty;
|
||||
Array<int> ess_tdof_list;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(pmesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
H1fes.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 6. Define an initial guess for the solution.
|
||||
auto IC_func = [](const Vector &x)
|
||||
{
|
||||
double r0 = 1.0;
|
||||
double rr = 0.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
rr += x(i)*x(i);
|
||||
}
|
||||
return r0*r0 - rr;
|
||||
};
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
|
||||
// 7. Define the solution vectors as a finite element grid functions
|
||||
// corresponding to the fespaces.
|
||||
ParGridFunction u_gf, delta_psi_gf;
|
||||
u_gf.MakeRef(&H1fes,x,offsets[0]);
|
||||
delta_psi_gf.MakeRef(&L2fes,x,offsets[1]);
|
||||
delta_psi_gf = 0.0;
|
||||
|
||||
ParGridFunction u_old_gf(&H1fes);
|
||||
ParGridFunction psi_old_gf(&L2fes);
|
||||
ParGridFunction psi_gf(&L2fes);
|
||||
u_old_gf = 0.0;
|
||||
psi_old_gf = 0.0;
|
||||
|
||||
// 8. Define the function coefficients for the solution and use them to
|
||||
// initialize the initial guess
|
||||
FunctionCoefficient exact_coef(exact_solution_obstacle);
|
||||
VectorFunctionCoefficient exact_grad_coef(dim,exact_solution_gradient_obstacle);
|
||||
FunctionCoefficient IC_coef(IC_func);
|
||||
ConstantCoefficient f(0.0);
|
||||
FunctionCoefficient obstacle(spherical_obstacle);
|
||||
u_gf.ProjectCoefficient(IC_coef);
|
||||
u_old_gf = u_gf;
|
||||
|
||||
// 9. Initialize the slack variable ψₕ = ln(uₕ)
|
||||
LogarithmGridFunctionCoefficient ln_u(u_gf, obstacle);
|
||||
psi_gf.ProjectCoefficient(ln_u);
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock;
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock.open(vishost,visport);
|
||||
sol_sock.precision(8);
|
||||
}
|
||||
|
||||
// 10. Iterate
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
double increment_u = 0.1;
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
ParGridFunction u_tmp(&H1fes);
|
||||
u_tmp = u_old_gf;
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\nOUTER ITERATION " << k+1 << endl;
|
||||
}
|
||||
|
||||
int j;
|
||||
for ( j = 0; j < 10; j++)
|
||||
{
|
||||
total_iterations++;
|
||||
|
||||
ConstantCoefficient alpha_cf(alpha);
|
||||
|
||||
ParLinearForm b0,b1;
|
||||
b0.Update(&H1fes,rhs.GetBlock(0),0);
|
||||
b1.Update(&L2fes,rhs.GetBlock(1),0);
|
||||
|
||||
ExponentialGridFunctionCoefficient exp_psi(psi_gf, zero);
|
||||
ProductCoefficient neg_exp_psi(-1.0,exp_psi);
|
||||
GradientGridFunctionCoefficient grad_u_old(&u_old_gf);
|
||||
ProductCoefficient alpha_f(alpha, f);
|
||||
GridFunctionCoefficient psi_cf(&psi_gf);
|
||||
GridFunctionCoefficient psi_old_cf(&psi_old_gf);
|
||||
SumCoefficient psi_old_minus_psi(psi_old_cf, psi_cf, 1.0, -1.0);
|
||||
|
||||
b0.AddDomainIntegrator(new DomainLFIntegrator(alpha_f));
|
||||
b0.AddDomainIntegrator(new DomainLFIntegrator(psi_old_minus_psi));
|
||||
b0.Assemble();
|
||||
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(exp_psi));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(obstacle));
|
||||
b1.Assemble();
|
||||
|
||||
ParBilinearForm a00(&H1fes);
|
||||
a00.SetDiagonalPolicy(mfem::Operator::DIAG_ONE);
|
||||
a00.AddDomainIntegrator(new DiffusionIntegrator(alpha_cf));
|
||||
a00.Assemble();
|
||||
HypreParMatrix A00;
|
||||
a00.FormLinearSystem(ess_tdof_list, x.GetBlock(0), rhs.GetBlock(0),
|
||||
A00, tx.GetBlock(0), trhs.GetBlock(0));
|
||||
|
||||
|
||||
ParMixedBilinearForm a10(&H1fes,&L2fes);
|
||||
a10.AddDomainIntegrator(new MixedScalarMassIntegrator());
|
||||
a10.Assemble();
|
||||
HypreParMatrix A10;
|
||||
a10.FormRectangularLinearSystem(ess_tdof_list, empty, x.GetBlock(0),
|
||||
rhs.GetBlock(1),
|
||||
A10, tx.GetBlock(0), trhs.GetBlock(1));
|
||||
|
||||
HypreParMatrix *A01 = A10.Transpose();
|
||||
|
||||
ParBilinearForm a11(&L2fes);
|
||||
a11.AddDomainIntegrator(new MassIntegrator(neg_exp_psi));
|
||||
// NOTE: Shift the spectrum of the Hessian matrix for additional
|
||||
// stability (Quasi-Newton).
|
||||
ConstantCoefficient eps_cf(-1e-6);
|
||||
if (order == 1)
|
||||
{
|
||||
// NOTE: ∇ₕuₕ = 0 for constant functions.
|
||||
// Therefore, we use the mass matrix to shift the spectrum
|
||||
a11.AddDomainIntegrator(new MassIntegrator(eps_cf));
|
||||
}
|
||||
else
|
||||
{
|
||||
a11.AddDomainIntegrator(new DiffusionIntegrator(eps_cf));
|
||||
}
|
||||
a11.Assemble();
|
||||
a11.Finalize();
|
||||
HypreParMatrix A11;
|
||||
a11.FormSystemMatrix(empty, A11);
|
||||
|
||||
BlockOperator A(toffsets);
|
||||
A.SetBlock(0,0,&A00);
|
||||
A.SetBlock(1,0,&A10);
|
||||
A.SetBlock(0,1,A01);
|
||||
A.SetBlock(1,1,&A11);
|
||||
|
||||
BlockDiagonalPreconditioner prec(toffsets);
|
||||
HypreBoomerAMG P00(A00);
|
||||
P00.SetPrintLevel(0);
|
||||
HypreSmoother P11(A11);
|
||||
prec.SetDiagonalBlock(0,&P00);
|
||||
prec.SetDiagonalBlock(1,&P11);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(-1);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetMaxIter(20000);
|
||||
gmres.SetKDim(500);
|
||||
gmres.SetOperator(A);
|
||||
gmres.SetPreconditioner(prec);
|
||||
gmres.Mult(trhs,tx);
|
||||
|
||||
u_gf.SetFromTrueDofs(tx.GetBlock(0));
|
||||
delta_psi_gf.SetFromTrueDofs(tx.GetBlock(1));
|
||||
|
||||
u_tmp -= u_gf;
|
||||
double Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
double gamma = 1.0;
|
||||
delta_psi_gf *= gamma;
|
||||
psi_gf += delta_psi_gf;
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "solution\n" << pmesh << u_gf << "window_title 'Discrete solution'"
|
||||
<< flush;
|
||||
}
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "Newton_update_size = " << Newton_update_size << endl;
|
||||
}
|
||||
|
||||
delete A01;
|
||||
|
||||
if (Newton_update_size < increment_u)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
u_tmp = u_gf;
|
||||
u_tmp -= u_old_gf;
|
||||
increment_u = u_tmp.ComputeL2Error(zero);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "Number of Newton iterations = " << j+1 << endl;
|
||||
mfem::out << "Increment (|| uₕ - uₕ_prvs||) = " << increment_u << endl;
|
||||
}
|
||||
|
||||
u_old_gf = u_gf;
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
if (increment_u < tol || k == max_it-1)
|
||||
{
|
||||
break;
|
||||
}
|
||||
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "H1-error (|| u - uₕᵏ||) = " << H1_error << endl;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\n Outer iterations: " << k+1
|
||||
<< "\n Total iterations: " << total_iterations
|
||||
<< "\n Total dofs: " << num_dofs_H1 + num_dofs_L2
|
||||
<< endl;
|
||||
}
|
||||
|
||||
// 11. Exact solution.
|
||||
if (visualization)
|
||||
{
|
||||
socketstream err_sock(vishost, visport);
|
||||
err_sock.precision(8);
|
||||
|
||||
ParGridFunction error_gf(&H1fes);
|
||||
error_gf.ProjectCoefficient(exact_coef);
|
||||
error_gf -= u_gf;
|
||||
|
||||
err_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
err_sock << "solution\n" << pmesh << error_gf << "window_title 'Error'" <<
|
||||
flush;
|
||||
}
|
||||
|
||||
{
|
||||
double L2_error = u_gf.ComputeL2Error(exact_coef);
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
|
||||
ExponentialGridFunctionCoefficient u_alt_cf(psi_gf,obstacle);
|
||||
ParGridFunction u_alt_gf(&L2fes);
|
||||
u_alt_gf.ProjectCoefficient(u_alt_cf);
|
||||
double L2_error_alt = u_alt_gf.ComputeL2Error(exact_coef);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\n Final L2-error (|| u - uₕ||) = " << L2_error <<
|
||||
endl;
|
||||
mfem::out << " Final H1-error (|| u - uₕ||) = " << H1_error << endl;
|
||||
mfem::out << " Final L2-error (|| u - ϕ - exp(ψₕ)||) = " << L2_error_alt <<
|
||||
endl;
|
||||
}
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
double LogarithmGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip) - obstacle->Eval(T, ip);
|
||||
return max(min_val, log(val));
|
||||
}
|
||||
|
||||
double ExponentialGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip);
|
||||
return min(max_val, max(min_val, exp(val) + obstacle->Eval(T, ip)));
|
||||
}
|
||||
|
||||
double spherical_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double beta = 0.9;
|
||||
|
||||
double b = r0*beta;
|
||||
double tmp = sqrt(r0*r0 - b*b);
|
||||
double B = tmp + b*b/tmp;
|
||||
double C = -b/tmp;
|
||||
|
||||
if (r > b)
|
||||
{
|
||||
return B + r * C;
|
||||
}
|
||||
else
|
||||
{
|
||||
return sqrt(r0*r0 - r*r);
|
||||
}
|
||||
}
|
||||
|
||||
double exact_solution_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
return A * log(r);
|
||||
}
|
||||
else
|
||||
{
|
||||
return sqrt(r0*r0-r*r);
|
||||
}
|
||||
}
|
||||
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
grad(0) = A * x / (r*r);
|
||||
grad(1) = A * y / (r*r);
|
||||
}
|
||||
else
|
||||
{
|
||||
grad(0) = - x / sqrt( r0*r0 - r*r );
|
||||
grad(1) = - y / sqrt( r0*r0 - r*r );
|
||||
}
|
||||
}
|
||||
@@ -1,466 +0,0 @@
|
||||
// MFEM Example 37
|
||||
//
|
||||
// Compile with: make ex37
|
||||
//
|
||||
// Sample runs:
|
||||
// ex37 -alpha 10
|
||||
// ex37 -alpha 10 -pv
|
||||
// ex37 -lambda 0.1 -mu 0.1
|
||||
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
// density-filtered [3] topology optimization problem. The
|
||||
// objective is to minimize the compliance
|
||||
//
|
||||
// minimize ∫_Ω f⋅u dx over u ∈ [H¹(Ω)]² and ρ ∈ L¹(Ω)
|
||||
//
|
||||
// subject to
|
||||
//
|
||||
// -Div(r(ρ̃)Cε(u)) = f in Ω + BCs
|
||||
// -ϵ²Δρ̃ + ρ̃ = ρ in Ω + Neumann BCs
|
||||
// 0 ≤ ρ ≤ 1 in Ω
|
||||
// ∫_Ω ρ dx = θ vol(Ω)
|
||||
//
|
||||
// Here, r(ρ̃) = ρ₀ + ρ̃³ (1-ρ₀) is the solid isotropic material
|
||||
// penalization (SIMP) law, C is the elasticity tensor for an
|
||||
// isotropic linearly elastic material, ϵ > 0 is the design
|
||||
// length scale, and 0 < θ < 1 is the volume fraction.
|
||||
//
|
||||
// The problem is discretized and gradients are computing using
|
||||
// finite elements [1]. The design is optimized using an entropic
|
||||
// mirror descent algorithm introduced by Keith and Surowiec [2]
|
||||
// that is tailored to the bound constraint 0 ≤ ρ ≤ 1.
|
||||
//
|
||||
// This example highlights the ability of MFEM to deliver high-
|
||||
// order solutions to inverse design problems and showcases how
|
||||
// to set up and solve PDE-constrained optimization problems
|
||||
// using the so-called reduced space approach.
|
||||
//
|
||||
// [1] Andreassen, E., Clausen, A., Schevenels, M., Lazarov, B. S., & Sigmund, O.
|
||||
// (2011). Efficient topology optimization in MATLAB using 88 lines of
|
||||
// code. Structural and Multidisciplinary Optimization, 43(1), 1-16.
|
||||
// [2] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
// [3] Lazarov, B. S., & Sigmund, O. (2011). Filters in topology optimization
|
||||
// based on Helmholtz‐type differential equations. International Journal
|
||||
// for Numerical Methods in Engineering, 86(6), 765-781.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <iostream>
|
||||
#include <fstream>
|
||||
#include "ex37.hpp"
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return double Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
double proj(GridFunction &psi, double target_volume, double tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
LinearForm int_sigmoid_psi(psi.FESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
LinearForm int_der_sigmoid_psi(psi.FESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
const double f = int_sigmoid_psi.Sum() - target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
const double df = int_der_sigmoid_psi.Sum();
|
||||
|
||||
const double dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
return int_sigmoid_psi.Sum();
|
||||
}
|
||||
|
||||
/**
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
* ---------------------------------------------------------------
|
||||
*
|
||||
* The Lagrangian for this problem is
|
||||
*
|
||||
* L(u,ρ,ρ̃,w,w̃) = (f,u) - (r(ρ̃) C ε(u),ε(w)) + (f,w)
|
||||
* - (ϵ² ∇ρ̃,∇w̃) - (ρ̃,w̃) + (ρ,w̃)
|
||||
*
|
||||
* where
|
||||
*
|
||||
* r(ρ̃) = ρ₀ + ρ̃³ (1 - ρ₀) (SIMP rule)
|
||||
*
|
||||
* ε(u) = (∇u + ∇uᵀ)/2 (symmetric gradient)
|
||||
*
|
||||
* C e = λtr(e)I + 2μe (isotropic material)
|
||||
*
|
||||
* NOTE: The Lame parameters can be computed from Young's modulus E
|
||||
* and Poisson's ratio ν as follows:
|
||||
*
|
||||
* λ = E ν/((1+ν)(1-2ν)), μ = E/(2(1+ν))
|
||||
*
|
||||
* ---------------------------------------------------------------
|
||||
*
|
||||
* Discretization choices:
|
||||
*
|
||||
* u ∈ V ⊂ (H¹)ᵈ (order p)
|
||||
* ψ ∈ L² (order p - 1), ρ = sigmoid(ψ)
|
||||
* ρ̃ ∈ H¹ (order p)
|
||||
* w ∈ V (order p)
|
||||
* w̃ ∈ H¹ (order p)
|
||||
*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM
|
||||
* ---------------------------------------------------------------
|
||||
*
|
||||
* Update ρ with projected mirror descent via the following algorithm.
|
||||
*
|
||||
* 1. Initialize ψ = inv_sigmoid(vol_fraction) so that ∫ sigmoid(ψ) = θ vol(Ω)
|
||||
*
|
||||
* While not converged:
|
||||
*
|
||||
* 2. Solve filter equation ∂_w̃ L = 0; i.e.,
|
||||
*
|
||||
* (ϵ² ∇ ρ̃, ∇ v ) + (ρ̃,v) = (ρ,v) ∀ v ∈ H¹.
|
||||
*
|
||||
* 3. Solve primal problem ∂_w L = 0; i.e.,
|
||||
*
|
||||
* (λ r(ρ̃) ∇⋅u, ∇⋅v) + (2 μ r(ρ̃) ε(u), ε(v)) = (f,v) ∀ v ∈ V.
|
||||
*
|
||||
* NB. The dual problem ∂_u L = 0 is the negative of the primal problem due to symmetry.
|
||||
*
|
||||
* 4. Solve for filtered gradient ∂_ρ̃ L = 0; i.e.,
|
||||
*
|
||||
* (ϵ² ∇ w̃ , ∇ v ) + (w̃ ,v) = (-r'(ρ̃) ( λ |∇⋅u|² + 2 μ |ε(u)|²),v) ∀ v ∈ H¹.
|
||||
*
|
||||
* 5. Project the gradient onto the discrete latent space; i.e., solve
|
||||
*
|
||||
* (G,v) = (w̃,v) ∀ v ∈ L².
|
||||
*
|
||||
* 6. Bregman proximal gradient update; i.e.,
|
||||
*
|
||||
* ψ ← ψ - αG + c,
|
||||
*
|
||||
* where α > 0 is a step size parameter and c ∈ R is a constant ensuring
|
||||
*
|
||||
* ∫_Ω sigmoid(ψ - αG + c) dx = θ vol(Ω).
|
||||
*
|
||||
* end
|
||||
*/
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
double alpha = 1.0;
|
||||
double epsilon = 0.01;
|
||||
double vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
double itol = 1e-1;
|
||||
double ntol = 1e-4;
|
||||
double rho_min = 1e-6;
|
||||
double lambda = 1.0;
|
||||
double mu = 1.0;
|
||||
bool glvis_visualization = true;
|
||||
bool paraview_output = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of gradient descent iterations.");
|
||||
args.AddOption(&ntol, "-ntol", "--rel-tol",
|
||||
"Normalized exit tolerance.");
|
||||
args.AddOption(&itol, "-itol", "--abs-tol",
|
||||
"Increment exit tolerance.");
|
||||
args.AddOption(&vol_fraction, "-vf", "--volume-fraction",
|
||||
"Volume fraction for the material density.");
|
||||
args.AddOption(&lambda, "-lambda", "--lambda",
|
||||
"Lamé constant λ.");
|
||||
args.AddOption(&mu, "-mu", "--mu",
|
||||
"Lamé constant μ.");
|
||||
args.AddOption(&rho_min, "-rmin", "--psi-min",
|
||||
"Minimum of density coefficient.");
|
||||
args.AddOption(&glvis_visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(¶view_output, "-pv", "--paraview", "-no-pv",
|
||||
"--no-paraview",
|
||||
"Enable or disable ParaView output.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(mfem::out);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(mfem::out);
|
||||
|
||||
Mesh mesh = Mesh::MakeCartesian2D(3, 1, mfem::Element::Type::QUADRILATERAL,
|
||||
true, 3.0, 1.0);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 2. Set BCs.
|
||||
for (int i = 0; i<mesh.GetNBE(); i++)
|
||||
{
|
||||
Element * be = mesh.GetBdrElement(i);
|
||||
Array<int> vertices;
|
||||
be->GetVertices(vertices);
|
||||
|
||||
double * coords1 = mesh.GetVertex(vertices[0]);
|
||||
double * coords2 = mesh.GetVertex(vertices[1]);
|
||||
|
||||
Vector center(2);
|
||||
center(0) = 0.5*(coords1[0] + coords2[0]);
|
||||
center(1) = 0.5*(coords1[1] + coords2[1]);
|
||||
|
||||
if (abs(center(0) - 0.0) < 1e-10)
|
||||
{
|
||||
// the left edge
|
||||
be->SetAttribute(1);
|
||||
}
|
||||
else
|
||||
{
|
||||
// all other boundaries
|
||||
be->SetAttribute(2);
|
||||
}
|
||||
}
|
||||
mesh.SetAttributes();
|
||||
|
||||
// 3. Refine the mesh.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
H1_FECollection state_fec(order, dim); // space for u
|
||||
H1_FECollection filter_fec(order, dim); // space for ρ̃
|
||||
L2_FECollection control_fec(order-1, dim,
|
||||
BasisType::GaussLobatto); // space for ψ
|
||||
FiniteElementSpace state_fes(&mesh, &state_fec,dim);
|
||||
FiniteElementSpace filter_fes(&mesh, &filter_fec);
|
||||
FiniteElementSpace control_fes(&mesh, &control_fec);
|
||||
|
||||
int state_size = state_fes.GetTrueVSize();
|
||||
int control_size = control_fes.GetTrueVSize();
|
||||
int filter_size = filter_fes.GetTrueVSize();
|
||||
mfem::out << "Number of state unknowns: " << state_size << std::endl;
|
||||
mfem::out << "Number of filter unknowns: " << filter_size << std::endl;
|
||||
mfem::out << "Number of control unknowns: " << control_size << std::endl;
|
||||
|
||||
// 5. Set the initial guess for ρ.
|
||||
GridFunction u(&state_fes);
|
||||
GridFunction psi(&control_fes);
|
||||
GridFunction psi_old(&control_fes);
|
||||
GridFunction rho_filter(&filter_fes);
|
||||
u = 0.0;
|
||||
rho_filter = vol_fraction;
|
||||
psi = inv_sigmoid(vol_fraction);
|
||||
psi_old = inv_sigmoid(vol_fraction);
|
||||
|
||||
// ρ = sigmoid(ψ)
|
||||
MappedGridFunctionCoefficient rho(&psi, sigmoid);
|
||||
// Interpolation of ρ = sigmoid(ψ) in control fes (for ParaView output)
|
||||
GridFunction rho_gf(&control_fes);
|
||||
// ρ - ρ_old = sigmoid(ψ) - sigmoid(ψ_old)
|
||||
DiffMappedGridFunctionCoefficient succ_diff_rho(&psi, &psi_old, sigmoid);
|
||||
|
||||
// 6. Set-up the physics solver.
|
||||
int maxat = mesh.bdr_attributes.Max();
|
||||
Array<int> ess_bdr(maxat);
|
||||
ess_bdr = 0;
|
||||
ess_bdr[0] = 1;
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient lambda_cf(lambda);
|
||||
ConstantCoefficient mu_cf(mu);
|
||||
LinearElasticitySolver * ElasticitySolver = new LinearElasticitySolver();
|
||||
ElasticitySolver->SetMesh(&mesh);
|
||||
ElasticitySolver->SetOrder(state_fec.GetOrder());
|
||||
ElasticitySolver->SetupFEM();
|
||||
Vector center(2); center(0) = 2.9; center(1) = 0.5;
|
||||
Vector force(2); force(0) = 0.0; force(1) = -1.0;
|
||||
double r = 0.05;
|
||||
VolumeForceCoefficient vforce_cf(r,center,force);
|
||||
ElasticitySolver->SetRHSCoefficient(&vforce_cf);
|
||||
ElasticitySolver->SetEssentialBoundary(ess_bdr);
|
||||
|
||||
// 7. Set-up the filter solver.
|
||||
ConstantCoefficient eps2_cf(epsilon*epsilon);
|
||||
DiffusionSolver * FilterSolver = new DiffusionSolver();
|
||||
FilterSolver->SetMesh(&mesh);
|
||||
FilterSolver->SetOrder(filter_fec.GetOrder());
|
||||
FilterSolver->SetDiffusionCoefficient(&eps2_cf);
|
||||
FilterSolver->SetMassCoefficient(&one);
|
||||
Array<int> ess_bdr_filter;
|
||||
if (mesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr_filter.SetSize(mesh.bdr_attributes.Max());
|
||||
ess_bdr_filter = 0;
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
|
||||
BilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
mass.Assemble();
|
||||
SparseMatrix M;
|
||||
Array<int> empty;
|
||||
mass.FormSystemMatrix(empty,M);
|
||||
|
||||
// 8. Define the Lagrange multiplier and gradient functions.
|
||||
GridFunction grad(&control_fes);
|
||||
GridFunction w_filter(&filter_fes);
|
||||
|
||||
// 9. Define some tools for later.
|
||||
ConstantCoefficient zero(0.0);
|
||||
GridFunction onegf(&control_fes);
|
||||
onegf = 1.0;
|
||||
GridFunction zerogf(&control_fes);
|
||||
zerogf = 0.0;
|
||||
LinearForm vol_form(&control_fes);
|
||||
vol_form.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
vol_form.Assemble();
|
||||
double domain_volume = vol_form(onegf);
|
||||
const double target_volume = domain_volume * vol_fraction;
|
||||
|
||||
// 10. Connect to GLVis. Prepare for VisIt output.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sout_r;
|
||||
if (glvis_visualization)
|
||||
{
|
||||
sout_r.open(vishost, visport);
|
||||
sout_r.precision(8);
|
||||
}
|
||||
|
||||
mfem::ParaViewDataCollection paraview_dc("ex37", &mesh);
|
||||
if (paraview_output)
|
||||
{
|
||||
rho_gf.ProjectCoefficient(rho);
|
||||
paraview_dc.SetPrefixPath("ParaView");
|
||||
paraview_dc.SetLevelsOfDetail(order);
|
||||
paraview_dc.SetDataFormat(VTKFormat::BINARY);
|
||||
paraview_dc.SetHighOrderOutput(true);
|
||||
paraview_dc.SetCycle(0);
|
||||
paraview_dc.SetTime(0.0);
|
||||
paraview_dc.RegisterField("displacement",&u);
|
||||
paraview_dc.RegisterField("density",&rho_gf);
|
||||
paraview_dc.RegisterField("filtered_density",&rho_filter);
|
||||
paraview_dc.Save();
|
||||
}
|
||||
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((double) k) / ((double) k-1); }
|
||||
|
||||
mfem::out << "\nStep = " << k << std::endl;
|
||||
|
||||
// Step 1 - Filter solve
|
||||
// Solve (ϵ^2 ∇ ρ̃, ∇ v ) + (ρ̃,v) = (ρ,v)
|
||||
FilterSolver->SetRHSCoefficient(&rho);
|
||||
FilterSolver->Solve();
|
||||
rho_filter = *FilterSolver->GetFEMSolution();
|
||||
|
||||
// Step 2 - State solve
|
||||
// Solve (λ r(ρ̃) ∇⋅u, ∇⋅v) + (2 μ r(ρ̃) ε(u), ε(v)) = (f,v)
|
||||
SIMPInterpolationCoefficient SIMP_cf(&rho_filter,rho_min, 1.0);
|
||||
ProductCoefficient lambda_SIMP_cf(lambda_cf,SIMP_cf);
|
||||
ProductCoefficient mu_SIMP_cf(mu_cf,SIMP_cf);
|
||||
ElasticitySolver->SetLameCoefficients(&lambda_SIMP_cf,&mu_SIMP_cf);
|
||||
ElasticitySolver->Solve();
|
||||
u = *ElasticitySolver->GetFEMSolution();
|
||||
|
||||
// Step 3 - Adjoint filter solve
|
||||
// Solve (ϵ² ∇ w̃, ∇ v) + (w̃ ,v) = (-r'(ρ̃) ( λ |∇⋅u|² + 2 μ |ε(u)|²),v)
|
||||
StrainEnergyDensityCoefficient rhs_cf(&lambda_cf,&mu_cf,&u, &rho_filter,
|
||||
rho_min);
|
||||
FilterSolver->SetRHSCoefficient(&rhs_cf);
|
||||
FilterSolver->Solve();
|
||||
w_filter = *FilterSolver->GetFEMSolution();
|
||||
|
||||
// Step 4 - Compute gradient
|
||||
// Solve G = M⁻¹w̃
|
||||
GridFunctionCoefficient w_cf(&w_filter);
|
||||
LinearForm w_rhs(&control_fes);
|
||||
w_rhs.AddDomainIntegrator(new DomainLFIntegrator(w_cf));
|
||||
w_rhs.Assemble();
|
||||
M.Mult(w_rhs,grad);
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const double material_volume = proj(psi, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
double norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
double norm_reduced_gradient = norm_increment/alpha;
|
||||
psi_old = psi;
|
||||
|
||||
double compliance = (*(ElasticitySolver->GetLinearForm()))(u);
|
||||
mfem::out << "norm of the reduced gradient = " << norm_reduced_gradient <<
|
||||
std::endl;
|
||||
mfem::out << "norm of the increment = " << norm_increment << endl;
|
||||
mfem::out << "compliance = " << compliance << std::endl;
|
||||
mfem::out << "volume fraction = " << material_volume / domain_volume <<
|
||||
std::endl;
|
||||
|
||||
if (glvis_visualization)
|
||||
{
|
||||
GridFunction r_gf(&filter_fes);
|
||||
r_gf.ProjectCoefficient(SIMP_cf);
|
||||
sout_r << "solution\n" << mesh << r_gf
|
||||
<< "window_title 'Design density r(ρ̃)'" << flush;
|
||||
}
|
||||
|
||||
if (paraview_output)
|
||||
{
|
||||
rho_gf.ProjectCoefficient(rho);
|
||||
paraview_dc.SetCycle(k);
|
||||
paraview_dc.SetTime((double)k);
|
||||
paraview_dc.Save();
|
||||
}
|
||||
|
||||
if (norm_reduced_gradient < ntol && norm_increment < itol)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
delete ElasticitySolver;
|
||||
delete FilterSolver;
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -1,748 +0,0 @@
|
||||
// MFEM Example 37 - Serial/Parallel Shared Code
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <functional>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// @brief Inverse sigmoid function
|
||||
double inv_sigmoid(double x)
|
||||
{
|
||||
double tol = 1e-12;
|
||||
x = std::min(std::max(tol,x),1.0-tol);
|
||||
return std::log(x/(1.0-x));
|
||||
}
|
||||
|
||||
/// @brief Sigmoid function
|
||||
double sigmoid(double x)
|
||||
{
|
||||
if (x >= 0)
|
||||
{
|
||||
return 1.0/(1.0+std::exp(-x));
|
||||
}
|
||||
else
|
||||
{
|
||||
return std::exp(x)/(1.0+std::exp(x));
|
||||
}
|
||||
}
|
||||
|
||||
/// @brief Derivative of sigmoid function
|
||||
double der_sigmoid(double x)
|
||||
{
|
||||
double tmp = sigmoid(-x);
|
||||
return tmp - std::pow(tmp,2);
|
||||
}
|
||||
|
||||
/// @brief Returns f(u(x)) where u is a scalar GridFunction and f:R → R
|
||||
class MappedGridFunctionCoefficient : public GridFunctionCoefficient
|
||||
{
|
||||
protected:
|
||||
std::function<double(const double)> fun; // f:R → R
|
||||
public:
|
||||
MappedGridFunctionCoefficient()
|
||||
:GridFunctionCoefficient(),
|
||||
fun([](double x) {return x;}) {}
|
||||
MappedGridFunctionCoefficient(const GridFunction *gf,
|
||||
std::function<double(const double)> fun_,
|
||||
int comp=1)
|
||||
:GridFunctionCoefficient(gf, comp),
|
||||
fun(fun_) {}
|
||||
|
||||
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
return fun(GridFunctionCoefficient::Eval(T, ip));
|
||||
}
|
||||
void SetFunction(std::function<double(const double)> fun_) { fun = fun_; }
|
||||
};
|
||||
|
||||
|
||||
/// @brief Returns f(u(x)) - f(v(x)) where u, v are scalar GridFunctions and f:R → R
|
||||
class DiffMappedGridFunctionCoefficient : public GridFunctionCoefficient
|
||||
{
|
||||
protected:
|
||||
const GridFunction *OtherGridF;
|
||||
GridFunctionCoefficient OtherGridF_cf;
|
||||
std::function<double(const double)> fun; // f:R → R
|
||||
public:
|
||||
DiffMappedGridFunctionCoefficient()
|
||||
:GridFunctionCoefficient(),
|
||||
OtherGridF(nullptr),
|
||||
OtherGridF_cf(),
|
||||
fun([](double x) {return x;}) {}
|
||||
DiffMappedGridFunctionCoefficient(const GridFunction *gf,
|
||||
const GridFunction *other_gf,
|
||||
std::function<double(const double)> fun_,
|
||||
int comp=1)
|
||||
:GridFunctionCoefficient(gf, comp),
|
||||
OtherGridF(other_gf),
|
||||
OtherGridF_cf(OtherGridF),
|
||||
fun(fun_) {}
|
||||
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
const double value1 = fun(GridFunctionCoefficient::Eval(T, ip));
|
||||
const double value2 = fun(OtherGridF_cf.Eval(T, ip));
|
||||
return value1 - value2;
|
||||
}
|
||||
void SetFunction(std::function<double(const double)> fun_) { fun = fun_; }
|
||||
};
|
||||
|
||||
/// @brief Solid isotropic material penalization (SIMP) coefficient
|
||||
class SIMPInterpolationCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *rho_filter;
|
||||
double min_val;
|
||||
double max_val;
|
||||
double exponent;
|
||||
|
||||
public:
|
||||
SIMPInterpolationCoefficient(GridFunction *rho_filter_, double min_val_= 1e-6,
|
||||
double max_val_ = 1.0, double exponent_ = 3)
|
||||
: rho_filter(rho_filter_), min_val(min_val_), max_val(max_val_),
|
||||
exponent(exponent_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip)
|
||||
{
|
||||
double val = rho_filter->GetValue(T, ip);
|
||||
double coeff = min_val + pow(val,exponent)*(max_val-min_val);
|
||||
return coeff;
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
/// @brief Strain energy density coefficient
|
||||
class StrainEnergyDensityCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
Coefficient * lambda=nullptr;
|
||||
Coefficient * mu=nullptr;
|
||||
GridFunction *u = nullptr; // displacement
|
||||
GridFunction *rho_filter = nullptr; // filter density
|
||||
DenseMatrix grad; // auxiliary matrix, used in Eval
|
||||
double exponent;
|
||||
double rho_min;
|
||||
|
||||
public:
|
||||
StrainEnergyDensityCoefficient(Coefficient *lambda_, Coefficient *mu_,
|
||||
GridFunction * u_, GridFunction * rho_filter_, double rho_min_=1e-6,
|
||||
double exponent_ = 3.0)
|
||||
: lambda(lambda_), mu(mu_), u(u_), rho_filter(rho_filter_),
|
||||
exponent(exponent_), rho_min(rho_min_)
|
||||
{
|
||||
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
|
||||
MFEM_ASSERT(u, "displacement field is not set");
|
||||
MFEM_ASSERT(rho_filter, "density field is not set");
|
||||
}
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip)
|
||||
{
|
||||
double L = lambda->Eval(T, ip);
|
||||
double M = mu->Eval(T, ip);
|
||||
u->GetVectorGradient(T, grad);
|
||||
double div_u = grad.Trace();
|
||||
double density = L*div_u*div_u;
|
||||
int dim = T.GetSpaceDim();
|
||||
for (int i=0; i<dim; i++)
|
||||
{
|
||||
for (int j=0; j<dim; j++)
|
||||
{
|
||||
density += M*grad(i,j)*(grad(i,j)+grad(j,i));
|
||||
}
|
||||
}
|
||||
double val = rho_filter->GetValue(T,ip);
|
||||
|
||||
return -exponent * pow(val, exponent-1.0) * (1-rho_min) * density;
|
||||
}
|
||||
};
|
||||
|
||||
/// @brief Volumetric force for linear elasticity
|
||||
class VolumeForceCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
double r;
|
||||
Vector center;
|
||||
Vector force;
|
||||
public:
|
||||
VolumeForceCoefficient(double r_,Vector & center_, Vector & force_) :
|
||||
VectorCoefficient(center_.Size()), r(r_), center(center_), force(force_) { }
|
||||
|
||||
using VectorCoefficient::Eval;
|
||||
|
||||
virtual void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
Vector xx; xx.SetSize(T.GetDimension());
|
||||
T.Transform(ip,xx);
|
||||
for (int i=0; i<xx.Size(); i++)
|
||||
{
|
||||
xx[i]=xx[i]-center[i];
|
||||
}
|
||||
|
||||
double cr=xx.Norml2();
|
||||
V.SetSize(T.GetDimension());
|
||||
if (cr <= r)
|
||||
{
|
||||
V = force;
|
||||
}
|
||||
else
|
||||
{
|
||||
V = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
void Set(double r_,Vector & center_, Vector & force_)
|
||||
{
|
||||
r=r_;
|
||||
center = center_;
|
||||
force = force_;
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* @brief Class for solving Poisson's equation:
|
||||
*
|
||||
* - ∇ ⋅(κ ∇ u) = f in Ω
|
||||
*
|
||||
*/
|
||||
class DiffusionSolver
|
||||
{
|
||||
private:
|
||||
Mesh * mesh = nullptr;
|
||||
int order = 1;
|
||||
// diffusion coefficient
|
||||
Coefficient * diffcf = nullptr;
|
||||
// mass coefficient
|
||||
Coefficient * masscf = nullptr;
|
||||
Coefficient * rhscf = nullptr;
|
||||
Coefficient * essbdr_cf = nullptr;
|
||||
Coefficient * neumann_cf = nullptr;
|
||||
VectorCoefficient * gradient_cf = nullptr;
|
||||
|
||||
// FEM solver
|
||||
int dim;
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
FiniteElementSpace * fes = nullptr;
|
||||
Array<int> ess_bdr;
|
||||
Array<int> neumann_bdr;
|
||||
GridFunction * u = nullptr;
|
||||
LinearForm * b = nullptr;
|
||||
bool parallel;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParMesh * pmesh = nullptr;
|
||||
ParFiniteElementSpace * pfes = nullptr;
|
||||
#endif
|
||||
|
||||
public:
|
||||
DiffusionSolver() { }
|
||||
DiffusionSolver(Mesh * mesh_, int order_, Coefficient * diffcf_,
|
||||
Coefficient * cf_);
|
||||
|
||||
void SetMesh(Mesh * mesh_)
|
||||
{
|
||||
mesh = mesh_;
|
||||
parallel = false;
|
||||
#ifdef MFEM_USE_MPI
|
||||
pmesh = dynamic_cast<ParMesh *>(mesh);
|
||||
if (pmesh) { parallel = true; }
|
||||
#endif
|
||||
}
|
||||
void SetOrder(int order_) { order = order_ ; }
|
||||
void SetDiffusionCoefficient(Coefficient * diffcf_) { diffcf = diffcf_; }
|
||||
void SetMassCoefficient(Coefficient * masscf_) { masscf = masscf_; }
|
||||
void SetRHSCoefficient(Coefficient * rhscf_) { rhscf = rhscf_; }
|
||||
void SetEssentialBoundary(const Array<int> & ess_bdr_) { ess_bdr = ess_bdr_;};
|
||||
void SetNeumannBoundary(const Array<int> & neumann_bdr_) { neumann_bdr = neumann_bdr_;};
|
||||
void SetNeumannData(Coefficient * neumann_cf_) {neumann_cf = neumann_cf_;}
|
||||
void SetEssBdrData(Coefficient * essbdr_cf_) {essbdr_cf = essbdr_cf_;}
|
||||
void SetGradientData(VectorCoefficient * gradient_cf_) {gradient_cf = gradient_cf_;}
|
||||
|
||||
void ResetFEM();
|
||||
void SetupFEM();
|
||||
|
||||
void Solve();
|
||||
GridFunction * GetFEMSolution();
|
||||
LinearForm * GetLinearForm() {return b;}
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction * GetParFEMSolution();
|
||||
ParLinearForm * GetParLinearForm()
|
||||
{
|
||||
if (parallel)
|
||||
{
|
||||
return dynamic_cast<ParLinearForm *>(b);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Wrong code path. Call GetLinearForm");
|
||||
return nullptr;
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
~DiffusionSolver();
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* @brief Class for solving linear elasticity:
|
||||
*
|
||||
* -∇ ⋅ σ(u) = f in Ω + BCs
|
||||
*
|
||||
* where
|
||||
*
|
||||
* σ(u) = λ ∇⋅u I + μ (∇ u + ∇uᵀ)
|
||||
*
|
||||
*/
|
||||
class LinearElasticitySolver
|
||||
{
|
||||
private:
|
||||
Mesh * mesh = nullptr;
|
||||
int order = 1;
|
||||
Coefficient * lambda_cf = nullptr;
|
||||
Coefficient * mu_cf = nullptr;
|
||||
VectorCoefficient * essbdr_cf = nullptr;
|
||||
VectorCoefficient * rhs_cf = nullptr;
|
||||
|
||||
// FEM solver
|
||||
int dim;
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
FiniteElementSpace * fes = nullptr;
|
||||
Array<int> ess_bdr;
|
||||
Array<int> neumann_bdr;
|
||||
GridFunction * u = nullptr;
|
||||
LinearForm * b = nullptr;
|
||||
bool parallel;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParMesh * pmesh = nullptr;
|
||||
ParFiniteElementSpace * pfes = nullptr;
|
||||
#endif
|
||||
|
||||
public:
|
||||
LinearElasticitySolver() { }
|
||||
LinearElasticitySolver(Mesh * mesh_, int order_,
|
||||
Coefficient * lambda_cf_, Coefficient * mu_cf_);
|
||||
|
||||
void SetMesh(Mesh * mesh_)
|
||||
{
|
||||
mesh = mesh_;
|
||||
parallel = false;
|
||||
#ifdef MFEM_USE_MPI
|
||||
pmesh = dynamic_cast<ParMesh *>(mesh);
|
||||
if (pmesh) { parallel = true; }
|
||||
#endif
|
||||
}
|
||||
void SetOrder(int order_) { order = order_ ; }
|
||||
void SetLameCoefficients(Coefficient * lambda_cf_, Coefficient * mu_cf_) { lambda_cf = lambda_cf_; mu_cf = mu_cf_; }
|
||||
void SetRHSCoefficient(VectorCoefficient * rhs_cf_) { rhs_cf = rhs_cf_; }
|
||||
void SetEssentialBoundary(const Array<int> & ess_bdr_) { ess_bdr = ess_bdr_;};
|
||||
void SetNeumannBoundary(const Array<int> & neumann_bdr_) { neumann_bdr = neumann_bdr_;};
|
||||
void SetEssBdrData(VectorCoefficient * essbdr_cf_) {essbdr_cf = essbdr_cf_;}
|
||||
|
||||
void ResetFEM();
|
||||
void SetupFEM();
|
||||
|
||||
void Solve();
|
||||
GridFunction * GetFEMSolution();
|
||||
LinearForm * GetLinearForm() {return b;}
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction * GetParFEMSolution();
|
||||
ParLinearForm * GetParLinearForm()
|
||||
{
|
||||
if (parallel)
|
||||
{
|
||||
return dynamic_cast<ParLinearForm *>(b);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Wrong code path. Call GetLinearForm");
|
||||
return nullptr;
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
~LinearElasticitySolver();
|
||||
|
||||
};
|
||||
|
||||
|
||||
// Poisson solver
|
||||
|
||||
DiffusionSolver::DiffusionSolver(Mesh * mesh_, int order_,
|
||||
Coefficient * diffcf_, Coefficient * rhscf_)
|
||||
: mesh(mesh_), order(order_), diffcf(diffcf_), rhscf(rhscf_)
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
pmesh = dynamic_cast<ParMesh *>(mesh);
|
||||
if (pmesh) { parallel = true; }
|
||||
#endif
|
||||
|
||||
SetupFEM();
|
||||
}
|
||||
|
||||
void DiffusionSolver::SetupFEM()
|
||||
{
|
||||
dim = mesh->Dimension();
|
||||
fec = new H1_FECollection(order, dim);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
pfes = new ParFiniteElementSpace(pmesh, fec);
|
||||
u = new ParGridFunction(pfes);
|
||||
b = new ParLinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
fes = new FiniteElementSpace(mesh, fec);
|
||||
u = new GridFunction(fes);
|
||||
b = new LinearForm(fes);
|
||||
}
|
||||
#else
|
||||
fes = new FiniteElementSpace(mesh, fec);
|
||||
u = new GridFunction(fes);
|
||||
b = new LinearForm(fes);
|
||||
#endif
|
||||
*u=0.0;
|
||||
|
||||
if (!ess_bdr.Size())
|
||||
{
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
{
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
pfes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
}
|
||||
#else
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
#endif
|
||||
*u=0.0;
|
||||
if (b)
|
||||
{
|
||||
delete b;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
b = new ParLinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
b = new LinearForm(fes);
|
||||
}
|
||||
#else
|
||||
b = new LinearForm(fes);
|
||||
#endif
|
||||
}
|
||||
if (rhscf)
|
||||
{
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(*rhscf));
|
||||
}
|
||||
if (neumann_cf)
|
||||
{
|
||||
MFEM_VERIFY(neumann_bdr.Size(), "neumann_bdr attributes not provided");
|
||||
b->AddBoundaryIntegrator(new BoundaryLFIntegrator(*neumann_cf),neumann_bdr);
|
||||
}
|
||||
else if (gradient_cf)
|
||||
{
|
||||
MFEM_VERIFY(neumann_bdr.Size(), "neumann_bdr attributes not provided");
|
||||
b->AddBoundaryIntegrator(new BoundaryNormalLFIntegrator(*gradient_cf),
|
||||
neumann_bdr);
|
||||
}
|
||||
|
||||
b->Assemble();
|
||||
|
||||
BilinearForm * a = nullptr;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
|
||||
|
||||
CGSolver * cg = nullptr;
|
||||
Solver * M = nullptr;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
M = new HypreBoomerAMG;
|
||||
dynamic_cast<HypreBoomerAMG*>(M)->SetPrintLevel(0);
|
||||
cg = new CGSolver(pmesh->GetComm());
|
||||
}
|
||||
else
|
||||
{
|
||||
M = new GSSmoother((SparseMatrix&)(*A));
|
||||
cg = new CGSolver;
|
||||
}
|
||||
#else
|
||||
M = new GSSmoother((SparseMatrix&)(*A));
|
||||
cg = new CGSolver;
|
||||
#endif
|
||||
cg->SetRelTol(1e-12);
|
||||
cg->SetMaxIter(10000);
|
||||
cg->SetPrintLevel(0);
|
||||
cg->SetPreconditioner(*M);
|
||||
cg->SetOperator(*A);
|
||||
cg->Mult(B, X);
|
||||
delete M;
|
||||
delete cg;
|
||||
a->RecoverFEMSolution(X, *b, *u);
|
||||
delete a;
|
||||
}
|
||||
|
||||
GridFunction * DiffusionSolver::GetFEMSolution()
|
||||
{
|
||||
return u;
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction * DiffusionSolver::GetParFEMSolution()
|
||||
{
|
||||
if (parallel)
|
||||
{
|
||||
return dynamic_cast<ParGridFunction*>(u);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Wrong code path. Call GetFEMSolution");
|
||||
return nullptr;
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
DiffusionSolver::~DiffusionSolver()
|
||||
{
|
||||
delete u; u = nullptr;
|
||||
delete fes; fes = nullptr;
|
||||
#ifdef MFEM_USE_MPI
|
||||
delete pfes; pfes=nullptr;
|
||||
#endif
|
||||
delete fec; fec = nullptr;
|
||||
delete b;
|
||||
}
|
||||
|
||||
|
||||
// Elasticity solver
|
||||
|
||||
LinearElasticitySolver::LinearElasticitySolver(Mesh * mesh_, int order_,
|
||||
Coefficient * lambda_cf_, Coefficient * mu_cf_)
|
||||
: mesh(mesh_), order(order_), lambda_cf(lambda_cf_), mu_cf(mu_cf_)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
pmesh = dynamic_cast<ParMesh *>(mesh);
|
||||
if (pmesh) { parallel = true; }
|
||||
#endif
|
||||
SetupFEM();
|
||||
}
|
||||
|
||||
void LinearElasticitySolver::SetupFEM()
|
||||
{
|
||||
dim = mesh->Dimension();
|
||||
fec = new H1_FECollection(order, dim,BasisType::Positive);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
pfes = new ParFiniteElementSpace(pmesh, fec, dim);
|
||||
u = new ParGridFunction(pfes);
|
||||
b = new ParLinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
fes = new FiniteElementSpace(mesh, fec,dim);
|
||||
u = new GridFunction(fes);
|
||||
b = new LinearForm(fes);
|
||||
}
|
||||
#else
|
||||
fes = new FiniteElementSpace(mesh, fec, dim);
|
||||
u = new GridFunction(fes);
|
||||
b = new LinearForm(fes);
|
||||
#endif
|
||||
*u=0.0;
|
||||
|
||||
if (!ess_bdr.Size())
|
||||
{
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr.SetSize(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void LinearElasticitySolver::Solve()
|
||||
{
|
||||
GridFunction * x = nullptr;
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
x = new ParGridFunction(pfes);
|
||||
pfes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
x = new GridFunction(fes);
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
}
|
||||
#else
|
||||
x = new GridFunction(fes);
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
#endif
|
||||
*u=0.0;
|
||||
if (b)
|
||||
{
|
||||
delete b;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
b = new ParLinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
b = new LinearForm(fes);
|
||||
}
|
||||
#else
|
||||
b = new LinearForm(fes);
|
||||
#endif
|
||||
}
|
||||
if (rhs_cf)
|
||||
{
|
||||
b->AddDomainIntegrator(new VectorDomainLFIntegrator(*rhs_cf));
|
||||
}
|
||||
|
||||
b->Assemble();
|
||||
|
||||
*x = 0.0;
|
||||
|
||||
BilinearForm * a = nullptr;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new ElasticityIntegrator(*lambda_cf, *mu_cf));
|
||||
a->Assemble();
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, *x, *b, A, X, B);
|
||||
|
||||
CGSolver * cg = nullptr;
|
||||
Solver * M = nullptr;
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
M = new HypreBoomerAMG;
|
||||
dynamic_cast<HypreBoomerAMG*>(M)->SetPrintLevel(0);
|
||||
cg = new CGSolver(pmesh->GetComm());
|
||||
}
|
||||
else
|
||||
{
|
||||
M = new GSSmoother((SparseMatrix&)(*A));
|
||||
cg = new CGSolver;
|
||||
}
|
||||
#else
|
||||
M = new GSSmoother((SparseMatrix&)(*A));
|
||||
cg = new CGSolver;
|
||||
#endif
|
||||
cg->SetRelTol(1e-10);
|
||||
cg->SetMaxIter(10000);
|
||||
cg->SetPrintLevel(0);
|
||||
cg->SetPreconditioner(*M);
|
||||
cg->SetOperator(*A);
|
||||
cg->Mult(B, X);
|
||||
delete M;
|
||||
delete cg;
|
||||
a->RecoverFEMSolution(X, *b, *x);
|
||||
*u+=*x;
|
||||
delete a;
|
||||
delete x;
|
||||
}
|
||||
|
||||
GridFunction * LinearElasticitySolver::GetFEMSolution()
|
||||
{
|
||||
return u;
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction * LinearElasticitySolver::GetParFEMSolution()
|
||||
{
|
||||
if (parallel)
|
||||
{
|
||||
return dynamic_cast<ParGridFunction*>(u);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Wrong code path. Call GetFEMSolution");
|
||||
return nullptr;
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
LinearElasticitySolver::~LinearElasticitySolver()
|
||||
{
|
||||
delete u; u = nullptr;
|
||||
delete fes; fes = nullptr;
|
||||
#ifdef MFEM_USE_MPI
|
||||
delete pfes; pfes=nullptr;
|
||||
#endif
|
||||
delete fec; fec = nullptr;
|
||||
delete b;
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -1,497 +0,0 @@
|
||||
// MFEM Example 37 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex37p
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex37p -alpha 10 -pv
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
// density-filtered [3] topology optimization problem. The
|
||||
// objective is to minimize the compliance
|
||||
//
|
||||
// minimize ∫_Ω f⋅u dx over u ∈ [H¹(Ω)]² and ρ ∈ L¹(Ω)
|
||||
//
|
||||
// subject to
|
||||
//
|
||||
// -Div(r(ρ̃)Cε(u)) = f in Ω + BCs
|
||||
// -ϵ²Δρ̃ + ρ̃ = ρ in Ω + Neumann BCs
|
||||
// 0 ≤ ρ ≤ 1 in Ω
|
||||
// ∫_Ω ρ dx = θ vol(Ω)
|
||||
//
|
||||
// Here, r(ρ̃) = ρ₀ + ρ̃³ (1-ρ₀) is the solid isotropic material
|
||||
// penalization (SIMP) law, C is the elasticity tensor for an
|
||||
// isotropic linearly elastic material, ϵ > 0 is the design
|
||||
// length scale, and 0 < θ < 1 is the volume fraction.
|
||||
//
|
||||
// The problem is discretized and gradients are computing using
|
||||
// finite elements [1]. The design is optimized using an entropic
|
||||
// mirror descent algorithm introduced by Keith and Surowiec [2]
|
||||
// that is tailored to the bound constraint 0 ≤ ρ ≤ 1.
|
||||
//
|
||||
// This example highlights the ability of MFEM to deliver high-
|
||||
// order solutions to inverse design problems and showcases how
|
||||
// to set up and solve PDE-constrained optimization problems
|
||||
// using the so-called reduced space approach.
|
||||
//
|
||||
// [1] Andreassen, E., Clausen, A., Schevenels, M., Lazarov, B. S., & Sigmund, O.
|
||||
// (2011). Efficient topology optimization in MATLAB using 88 lines of
|
||||
// code. Structural and Multidisciplinary Optimization, 43(1), 1-16.
|
||||
// [2] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
// [3] Lazarov, B. S., & Sigmund, O. (2011). Filters in topology optimization
|
||||
// based on Helmholtz‐type differential equations. International Journal
|
||||
// for Numerical Methods in Engineering, 86(6), 765-781.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <iostream>
|
||||
#include <fstream>
|
||||
#include "ex37.hpp"
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return double Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
double proj(ParGridFunction &psi, double target_volume, double tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
double f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
|
||||
f -= target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
double df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
|
||||
|
||||
const double dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
double material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1, MPI_DOUBLE, MPI_SUM,
|
||||
MPI_COMM_WORLD);
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
/**
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
* ---------------------------------------------------------------
|
||||
*
|
||||
* The Lagrangian for this problem is
|
||||
*
|
||||
* L(u,ρ,ρ̃,w,w̃) = (f,u) - (r(ρ̃) C ε(u),ε(w)) + (f,w)
|
||||
* - (ϵ² ∇ρ̃,∇w̃) - (ρ̃,w̃) + (ρ,w̃)
|
||||
*
|
||||
* where
|
||||
*
|
||||
* r(ρ̃) = ρ₀ + ρ̃³ (1 - ρ₀) (SIMP rule)
|
||||
*
|
||||
* ε(u) = (∇u + ∇uᵀ)/2 (symmetric gradient)
|
||||
*
|
||||
* C e = λtr(e)I + 2μe (isotropic material)
|
||||
*
|
||||
* NOTE: The Lame parameters can be computed from Young's modulus E
|
||||
* and Poisson's ratio ν as follows:
|
||||
*
|
||||
* λ = E ν/((1+ν)(1-2ν)), μ = E/(2(1+ν))
|
||||
*
|
||||
* ---------------------------------------------------------------
|
||||
*
|
||||
* Discretization choices:
|
||||
*
|
||||
* u ∈ V ⊂ (H¹)ᵈ (order p)
|
||||
* ψ ∈ L² (order p - 1), ρ = sigmoid(ψ)
|
||||
* ρ̃ ∈ H¹ (order p)
|
||||
* w ∈ V (order p)
|
||||
* w̃ ∈ H¹ (order p)
|
||||
*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM
|
||||
* ---------------------------------------------------------------
|
||||
*
|
||||
* Update ρ with projected mirror descent via the following algorithm.
|
||||
*
|
||||
* 1. Initialize ψ = inv_sigmoid(vol_fraction) so that ∫ sigmoid(ψ) = θ vol(Ω)
|
||||
*
|
||||
* While not converged:
|
||||
*
|
||||
* 2. Solve filter equation ∂_w̃ L = 0; i.e.,
|
||||
*
|
||||
* (ϵ² ∇ ρ̃, ∇ v ) + (ρ̃,v) = (ρ,v) ∀ v ∈ H¹.
|
||||
*
|
||||
* 3. Solve primal problem ∂_w L = 0; i.e.,
|
||||
*
|
||||
* (λ r(ρ̃) ∇⋅u, ∇⋅v) + (2 μ r(ρ̃) ε(u), ε(v)) = (f,v) ∀ v ∈ V.
|
||||
*
|
||||
* NB. The dual problem ∂_u L = 0 is the negative of the primal problem due to symmetry.
|
||||
*
|
||||
* 4. Solve for filtered gradient ∂_ρ̃ L = 0; i.e.,
|
||||
*
|
||||
* (ϵ² ∇ w̃ , ∇ v ) + (w̃ ,v) = (-r'(ρ̃) ( λ |∇⋅u|² + 2 μ |ε(u)|²),v) ∀ v ∈ H¹.
|
||||
*
|
||||
* 5. Project the gradient onto the discrete latent space; i.e., solve
|
||||
*
|
||||
* (G,v) = (w̃,v) ∀ v ∈ L².
|
||||
*
|
||||
* 6. Bregman proximal gradient update; i.e.,
|
||||
*
|
||||
* ψ ← ψ - αG + c,
|
||||
*
|
||||
* where α > 0 is a step size parameter and c ∈ R is a constant ensuring
|
||||
*
|
||||
* ∫_Ω sigmoid(ψ - αG + c) dx = θ vol(Ω).
|
||||
*
|
||||
* end
|
||||
*/
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 0. Initialize MPI and HYPRE.
|
||||
Mpi::Init();
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 1. Parse command-line options.
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
double alpha = 1.0;
|
||||
double epsilon = 0.01;
|
||||
double vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
double itol = 1e-1;
|
||||
double ntol = 1e-4;
|
||||
double rho_min = 1e-6;
|
||||
double lambda = 1.0;
|
||||
double mu = 1.0;
|
||||
bool glvis_visualization = true;
|
||||
bool paraview_output = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of gradient descent iterations.");
|
||||
args.AddOption(&ntol, "-ntol", "--rel-tol",
|
||||
"Normalized exit tolerance.");
|
||||
args.AddOption(&itol, "-itol", "--abs-tol",
|
||||
"Increment exit tolerance.");
|
||||
args.AddOption(&vol_fraction, "-vf", "--volume-fraction",
|
||||
"Volume fraction for the material density.");
|
||||
args.AddOption(&lambda, "-lambda", "--lambda",
|
||||
"Lamé constant λ.");
|
||||
args.AddOption(&mu, "-mu", "--mu",
|
||||
"Lamé constant μ.");
|
||||
args.AddOption(&rho_min, "-rmin", "--psi-min",
|
||||
"Minimum of density coefficient.");
|
||||
args.AddOption(&glvis_visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(¶view_output, "-pv", "--paraview", "-no-pv",
|
||||
"--no-paraview",
|
||||
"Enable or disable ParaView output.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << num_procs << " number of process created.\n";
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
Mesh mesh = Mesh::MakeCartesian2D(3, 1, mfem::Element::Type::QUADRILATERAL,
|
||||
true, 3.0, 1.0);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 2. Set BCs.
|
||||
for (int i = 0; i<mesh.GetNBE(); i++)
|
||||
{
|
||||
Element * be = mesh.GetBdrElement(i);
|
||||
Array<int> vertices;
|
||||
be->GetVertices(vertices);
|
||||
|
||||
double * coords1 = mesh.GetVertex(vertices[0]);
|
||||
double * coords2 = mesh.GetVertex(vertices[1]);
|
||||
|
||||
Vector center(2);
|
||||
center(0) = 0.5*(coords1[0] + coords2[0]);
|
||||
center(1) = 0.5*(coords1[1] + coords2[1]);
|
||||
|
||||
if (abs(center(0) - 0.0) < 1e-10)
|
||||
{
|
||||
// the left edge
|
||||
be->SetAttribute(1);
|
||||
}
|
||||
else
|
||||
{
|
||||
// all other boundaries
|
||||
be->SetAttribute(2);
|
||||
}
|
||||
}
|
||||
mesh.SetAttributes();
|
||||
|
||||
// 3. Refine the mesh.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
H1_FECollection state_fec(order, dim); // space for u
|
||||
H1_FECollection filter_fec(order, dim); // space for ρ̃
|
||||
L2_FECollection control_fec(order-1, dim,
|
||||
BasisType::GaussLobatto); // space for ψ
|
||||
ParFiniteElementSpace state_fes(&pmesh, &state_fec,dim);
|
||||
ParFiniteElementSpace filter_fes(&pmesh, &filter_fec);
|
||||
ParFiniteElementSpace control_fes(&pmesh, &control_fec);
|
||||
|
||||
HYPRE_BigInt state_size = state_fes.GlobalTrueVSize();
|
||||
HYPRE_BigInt control_size = control_fes.GlobalTrueVSize();
|
||||
HYPRE_BigInt filter_size = filter_fes.GlobalTrueVSize();
|
||||
if (myid==0)
|
||||
{
|
||||
cout << "Number of state unknowns: " << state_size << endl;
|
||||
cout << "Number of filter unknowns: " << filter_size << endl;
|
||||
cout << "Number of control unknowns: " << control_size << endl;
|
||||
}
|
||||
|
||||
// 5. Set the initial guess for ρ.
|
||||
ParGridFunction u(&state_fes);
|
||||
ParGridFunction psi(&control_fes);
|
||||
ParGridFunction psi_old(&control_fes);
|
||||
ParGridFunction rho_filter(&filter_fes);
|
||||
u = 0.0;
|
||||
rho_filter = vol_fraction;
|
||||
psi = inv_sigmoid(vol_fraction);
|
||||
psi_old = inv_sigmoid(vol_fraction);
|
||||
|
||||
// ρ = sigmoid(ψ)
|
||||
MappedGridFunctionCoefficient rho(&psi, sigmoid);
|
||||
// Interpolation of ρ = sigmoid(ψ) in control fes (for ParaView output)
|
||||
ParGridFunction rho_gf(&control_fes);
|
||||
// ρ - ρ_old = sigmoid(ψ) - sigmoid(ψ_old)
|
||||
DiffMappedGridFunctionCoefficient succ_diff_rho(&psi, &psi_old, sigmoid);
|
||||
|
||||
// 6. Set-up the physics solver.
|
||||
int maxat = pmesh.bdr_attributes.Max();
|
||||
Array<int> ess_bdr(maxat);
|
||||
ess_bdr = 0;
|
||||
ess_bdr[0] = 1;
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient lambda_cf(lambda);
|
||||
ConstantCoefficient mu_cf(mu);
|
||||
LinearElasticitySolver * ElasticitySolver = new LinearElasticitySolver();
|
||||
ElasticitySolver->SetMesh(&pmesh);
|
||||
ElasticitySolver->SetOrder(state_fec.GetOrder());
|
||||
ElasticitySolver->SetupFEM();
|
||||
Vector center(2); center(0) = 2.9; center(1) = 0.5;
|
||||
Vector force(2); force(0) = 0.0; force(1) = -1.0;
|
||||
double r = 0.05;
|
||||
VolumeForceCoefficient vforce_cf(r,center,force);
|
||||
ElasticitySolver->SetRHSCoefficient(&vforce_cf);
|
||||
ElasticitySolver->SetEssentialBoundary(ess_bdr);
|
||||
|
||||
// 7. Set-up the filter solver.
|
||||
ConstantCoefficient eps2_cf(epsilon*epsilon);
|
||||
DiffusionSolver * FilterSolver = new DiffusionSolver();
|
||||
FilterSolver->SetMesh(&pmesh);
|
||||
FilterSolver->SetOrder(filter_fec.GetOrder());
|
||||
FilterSolver->SetDiffusionCoefficient(&eps2_cf);
|
||||
FilterSolver->SetMassCoefficient(&one);
|
||||
Array<int> ess_bdr_filter;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr_filter.SetSize(pmesh.bdr_attributes.Max());
|
||||
ess_bdr_filter = 0;
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
|
||||
ParBilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
mass.Assemble();
|
||||
HypreParMatrix M;
|
||||
Array<int> empty;
|
||||
mass.FormSystemMatrix(empty,M);
|
||||
|
||||
// 8. Define the Lagrange multiplier and gradient functions.
|
||||
ParGridFunction grad(&control_fes);
|
||||
ParGridFunction w_filter(&filter_fes);
|
||||
|
||||
// 9. Define some tools for later.
|
||||
ConstantCoefficient zero(0.0);
|
||||
ParGridFunction onegf(&control_fes);
|
||||
onegf = 1.0;
|
||||
ParGridFunction zerogf(&control_fes);
|
||||
zerogf = 0.0;
|
||||
ParLinearForm vol_form(&control_fes);
|
||||
vol_form.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
vol_form.Assemble();
|
||||
double domain_volume = vol_form(onegf);
|
||||
const double target_volume = domain_volume * vol_fraction;
|
||||
|
||||
// 10. Connect to GLVis. Prepare for VisIt output.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sout_r;
|
||||
if (glvis_visualization)
|
||||
{
|
||||
sout_r.open(vishost, visport);
|
||||
sout_r.precision(8);
|
||||
}
|
||||
|
||||
mfem::ParaViewDataCollection paraview_dc("ex37p", &pmesh);
|
||||
if (paraview_output)
|
||||
{
|
||||
rho_gf.ProjectCoefficient(rho);
|
||||
paraview_dc.SetPrefixPath("ParaView");
|
||||
paraview_dc.SetLevelsOfDetail(order);
|
||||
paraview_dc.SetDataFormat(VTKFormat::BINARY);
|
||||
paraview_dc.SetHighOrderOutput(true);
|
||||
paraview_dc.SetCycle(0);
|
||||
paraview_dc.SetTime(0.0);
|
||||
paraview_dc.RegisterField("displacement",&u);
|
||||
paraview_dc.RegisterField("density",&rho_gf);
|
||||
paraview_dc.RegisterField("filtered_density",&rho_filter);
|
||||
paraview_dc.Save();
|
||||
}
|
||||
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((double) k) / ((double) k-1); }
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\nStep = " << k << endl;
|
||||
}
|
||||
|
||||
// Step 1 - Filter solve
|
||||
// Solve (ϵ^2 ∇ ρ̃, ∇ v ) + (ρ̃,v) = (ρ,v)
|
||||
FilterSolver->SetRHSCoefficient(&rho);
|
||||
FilterSolver->Solve();
|
||||
rho_filter = *FilterSolver->GetFEMSolution();
|
||||
|
||||
// Step 2 - State solve
|
||||
// Solve (λ r(ρ̃) ∇⋅u, ∇⋅v) + (2 μ r(ρ̃) ε(u), ε(v)) = (f,v)
|
||||
SIMPInterpolationCoefficient SIMP_cf(&rho_filter,rho_min, 1.0);
|
||||
ProductCoefficient lambda_SIMP_cf(lambda_cf,SIMP_cf);
|
||||
ProductCoefficient mu_SIMP_cf(mu_cf,SIMP_cf);
|
||||
ElasticitySolver->SetLameCoefficients(&lambda_SIMP_cf,&mu_SIMP_cf);
|
||||
ElasticitySolver->Solve();
|
||||
u = *ElasticitySolver->GetFEMSolution();
|
||||
|
||||
// Step 3 - Adjoint filter solve
|
||||
// Solve (ϵ² ∇ w̃, ∇ v) + (w̃ ,v) = (-r'(ρ̃) ( λ |∇⋅u|² + 2 μ |ε(u)|²),v)
|
||||
StrainEnergyDensityCoefficient rhs_cf(&lambda_cf,&mu_cf,&u, &rho_filter,
|
||||
rho_min);
|
||||
FilterSolver->SetRHSCoefficient(&rhs_cf);
|
||||
FilterSolver->Solve();
|
||||
w_filter = *FilterSolver->GetFEMSolution();
|
||||
|
||||
// Step 4 - Compute gradient
|
||||
// Solve G = M⁻¹w̃
|
||||
GridFunctionCoefficient w_cf(&w_filter);
|
||||
ParLinearForm w_rhs(&control_fes);
|
||||
w_rhs.AddDomainIntegrator(new DomainLFIntegrator(w_cf));
|
||||
w_rhs.Assemble();
|
||||
M.Mult(w_rhs,grad);
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const double material_volume = proj(psi, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
double norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
double norm_reduced_gradient = norm_increment/alpha;
|
||||
psi_old = psi;
|
||||
|
||||
double compliance = (*(ElasticitySolver->GetLinearForm()))(u);
|
||||
MPI_Allreduce(MPI_IN_PLACE,&compliance,1,MPI_DOUBLE,MPI_SUM,MPI_COMM_WORLD);
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "norm of the reduced gradient = " << norm_reduced_gradient << endl;
|
||||
mfem::out << "norm of the increment = " << norm_increment << endl;
|
||||
mfem::out << "compliance = " << compliance << endl;
|
||||
mfem::out << "volume fraction = " << material_volume / domain_volume << endl;
|
||||
}
|
||||
|
||||
if (glvis_visualization)
|
||||
{
|
||||
ParGridFunction r_gf(&filter_fes);
|
||||
r_gf.ProjectCoefficient(SIMP_cf);
|
||||
sout_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sout_r << "solution\n" << pmesh << r_gf
|
||||
<< "window_title 'Design density r(ρ̃)'" << flush;
|
||||
}
|
||||
|
||||
if (paraview_output)
|
||||
{
|
||||
rho_gf.ProjectCoefficient(rho);
|
||||
paraview_dc.SetCycle(k);
|
||||
paraview_dc.SetTime((double)k);
|
||||
paraview_dc.Save();
|
||||
}
|
||||
|
||||
if (norm_reduced_gradient < ntol && norm_increment < itol)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
delete ElasticitySolver;
|
||||
delete FilterSolver;
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -5,7 +5,6 @@
|
||||
// Sample runs: mpirun -np 4 ex3p -m ../data/star.mesh
|
||||
// mpirun -np 4 ex3p -m ../data/square-disc.mesh -o 2
|
||||
// mpirun -np 4 ex3p -m ../data/beam-tet.mesh
|
||||
// mpirun -np 4 ex3p -m ../data/beam-tet.mesh -nc -o 2
|
||||
// mpirun -np 4 ex3p -m ../data/beam-hex.mesh
|
||||
// mpirun -np 4 ex3p -m ../data/beam-hex.mesh -o 2 -pa
|
||||
// mpirun -np 4 ex3p -m ../data/escher.mesh
|
||||
@@ -71,7 +70,6 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
bool nc = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
#ifdef MFEM_USE_AMGX
|
||||
@@ -89,9 +87,6 @@ int main(int argc, char *argv[])
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&nc, "-nc", "--non-conforming", "-c",
|
||||
"--conforming",
|
||||
"Mark the mesh as nonconforming before partitioning.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
@@ -129,11 +124,6 @@ int main(int argc, char *argv[])
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
dim = mesh->Dimension();
|
||||
int sdim = mesh->SpaceDimension();
|
||||
if (nc)
|
||||
{
|
||||
// Can set to false to use conformal refinement for simplices.
|
||||
mesh->EnsureNCMesh(true);
|
||||
}
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
|
||||
+1
-2
@@ -450,8 +450,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Implementation of class FE_Evolution
|
||||
FE_Evolution::FE_Evolution(BilinearForm &M_, BilinearForm &K_, const Vector &b_)
|
||||
: TimeDependentOperator(M_.FESpace()->GetTrueVSize()),
|
||||
M(M_), K(K_), b(b_), z(height)
|
||||
: TimeDependentOperator(M_.Height()), M(M_), K(K_), b(b_), z(M_.Height())
|
||||
{
|
||||
Array<int> ess_tdof_list;
|
||||
if (M.GetAssemblyLevel() == AssemblyLevel::LEGACY)
|
||||
|
||||
+2
-6
@@ -536,10 +536,8 @@ int main(int argc, char *argv[])
|
||||
if (!sout)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Unable to connect to GLVis server at "
|
||||
<< vishost << ':' << visport << endl;
|
||||
}
|
||||
visualization = false;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
@@ -554,10 +552,8 @@ int main(int argc, char *argv[])
|
||||
sout << "pause\n";
|
||||
sout << flush;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "GLVis visualization paused."
|
||||
<< " Press space (in the GLVis window) to resume it.\n";
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -659,9 +655,9 @@ int main(int argc, char *argv[])
|
||||
// Implementation of class FE_Evolution
|
||||
FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
|
||||
const Vector &b_, PrecType prec_type)
|
||||
: TimeDependentOperator(M_.ParFESpace()->GetTrueVSize()), b(b_),
|
||||
: TimeDependentOperator(M_.Height()), b(b_),
|
||||
M_solver(M_.ParFESpace()->GetComm()),
|
||||
z(height)
|
||||
z(M_.Height())
|
||||
{
|
||||
if (M_.GetAssemblyLevel()==AssemblyLevel::LEGACY)
|
||||
{
|
||||
|
||||
+4
-12
@@ -23,14 +23,13 @@ MFEM_LIB_FILE = mfem_is_not_built
|
||||
|
||||
SEQ_EXAMPLES = ex0 ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 \
|
||||
ex17 ex18 ex19 ex20 ex21 ex22 ex23 ex24 ex25 ex26 ex27 ex28 ex29 ex30 \
|
||||
ex31 ex33 ex34 ex36 ex37
|
||||
ex31 ex33
|
||||
PAR_EXAMPLES = ex0p ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p \
|
||||
ex12p ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p ex22p ex24p \
|
||||
ex25p ex26p ex27p ex28p ex29p ex30p ex31p ex32p ex33p ex34p ex35p ex36p \
|
||||
ex37p
|
||||
SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
|
||||
ex25p ex26p ex27p ex28p ex29p ex30p ex31p ex32p ex33p
|
||||
SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
|
||||
PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p \
|
||||
ex24p ex25p ex26p ex34p ex35p
|
||||
ex24p ex25p ex26p
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
EXAMPLES = $(SEQ_EXAMPLES)
|
||||
@@ -93,12 +92,10 @@ $(SUBDIRS_TPRINT):
|
||||
# Additional dependencies
|
||||
ex18: $(SRC)ex18.hpp
|
||||
ex33: $(SRC)ex33.hpp
|
||||
ex37: $(SRC)ex37.hpp
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
ex18p: $(SRC)ex18.hpp
|
||||
ex33p: $(SRC)ex33.hpp
|
||||
ex37p: $(SRC)ex37.hpp
|
||||
endif
|
||||
|
||||
MFEM_TESTS = EXAMPLES
|
||||
@@ -142,10 +139,6 @@ ex27-test-seq: ex27
|
||||
@$(call mfem-test,$<,, Serial example,-dg)
|
||||
ex27p-test-par: ex27p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-dg)
|
||||
ex37-test-seq: ex37
|
||||
@$(call mfem-test,$<,, Serial example,-mi 3)
|
||||
ex37p-test-par: ex37p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
|
||||
# Testing: optional tests
|
||||
ifeq ($(MFEM_USE_STRUMPACK),YES)
|
||||
ex11p-test-strumpack: ex11p
|
||||
@@ -190,4 +183,3 @@ clean-exec:
|
||||
@rm -f ex23.mesh ex23-*.gf
|
||||
@rm -f ex25.mesh ex25-*.gf ex25p-*.*
|
||||
@rm -rf ex28_* ex28p_*
|
||||
@rm -rf cond.* cond_mesh.* cond_j.* dsol.* port_mesh.* port_mode.*
|
||||
|
||||
@@ -24,13 +24,13 @@ if (MFEM_USE_MPI)
|
||||
ex10p.cpp
|
||||
)
|
||||
list(APPEND PETSC_RC_FILES
|
||||
rc_ex1p rc_ex1p_device rc_ex1p_deviceamg
|
||||
rc_ex2p rc_ex2p_bddc rc_ex2p_asm
|
||||
rc_ex1p
|
||||
rc_ex2p
|
||||
rc_ex3p rc_ex3p_bddc
|
||||
rc_ex4p rc_ex4p_bddc
|
||||
rc_ex5p_bddc rc_ex5p_fieldsplit
|
||||
rc_ex9p_expl rc_ex9p_expl_device rc_ex9p_impl
|
||||
rc_ex10p rc_ex10p_mf rc_ex10p_mfop rc_ex10p_jfnk
|
||||
rc_ex9p_expl rc_ex9p_impl
|
||||
rc_ex10p
|
||||
)
|
||||
endif()
|
||||
|
||||
@@ -39,7 +39,7 @@ if (MFEM_USE_SLEPC)
|
||||
ex11p.cpp
|
||||
)
|
||||
list(APPEND PETSC_RC_FILES
|
||||
rc_ex11p_lobpcg rc_ex11p_lobpcg_device rc_ex11p_gd
|
||||
rc_ex11p_lobpcg rc_ex11p_gd
|
||||
)
|
||||
endif()
|
||||
|
||||
@@ -74,13 +74,7 @@ add_mfem_examples(PETSC_EXAMPLES_SRCS ${PFX} copy_petsc_rc_files test_petsc)
|
||||
# Command line options for the tests.
|
||||
set(EX1_ARGS_W -m ../../data/amr-quad.mesh --usepetsc)
|
||||
set(EX1_ARGS_P -m ../../data/amr-quad.mesh --usepetsc --petscopts rc_ex1p)
|
||||
set(EX1_ARGS_CUDA -m ../../data/star.mesh --usepetsc --partial-assembly --device cuda --petscopts rc_ex1p_device)
|
||||
set(EX1_ARGS_CUDAAMG -m ../../data/star.mesh --usepetsc --device cuda --petscopts rc_ex1p_deviceamg)
|
||||
set(EX1_ARGS_HIP -m ../../data/star.mesh --usepetsc --partial-assembly --device hip --petscopts rc_ex1p_device)
|
||||
set(EX1_ARGS_HIPAMG -m ../../data/star.mesh --usepetsc --device hip --petscopts rc_ex1p_deviceamg)
|
||||
set(EX2_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex2p)
|
||||
set(EX2_ARGS_BDDC -m ../../data/beam-tri.mesh --usepetsc --nonoverlapping --petscopts rc_ex2p_bddc)
|
||||
set(EX2_ARGS_ASM -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex2p_asm)
|
||||
set(EX3_ARGS -m ../../data/klein-bottle.mesh -o 2 -f 0.1 --usepetsc --petscopts rc_ex3p_bddc --nonoverlapping)
|
||||
set(EX4_ARGS -m ../../data/klein-bottle.mesh -o 2 --usepetsc --petscopts rc_ex4p_bddc --nonoverlapping)
|
||||
set(EX4_HYB_ARGS -m ../../data/klein-bottle.mesh -o 2 --usepetsc --petscopts rc_ex4p_bddc --nonoverlapping --hybridization)
|
||||
@@ -91,46 +85,22 @@ set(EX6_ARGS -m ../../data/amr-quad.mesh --usepetsc)
|
||||
set(EX6_NONOVL_ARGS -m ../../data/amr-quad.mesh --usepetsc --nonoverlapping)
|
||||
set(EX9_E_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl -dt 0.1)
|
||||
set(EX9_ES_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl --no-step)
|
||||
set(EX9_ES_ARGS_CUDA -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl_device --no-step --partial-assembly --device cuda)
|
||||
set(EX9_ES_ARGS_HIP -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl_device --no-step --partial-assembly --device hip)
|
||||
set(EX9_IS_ARGS -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_impl --implicit -tf 0.5)
|
||||
set(EX10_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p -tf 30 -s 3 -rs 2 -dt 3)
|
||||
set(EX10_MF_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mf -tf 6 -s 3 -rs 0 -dt 3)
|
||||
set(EX10_MFOP_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mfop -tf 6 -s 3 -rs 0 -dt 3)
|
||||
set(EX10_JFNK_ARGS -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_jfnk --jfnk -tf 6 -s 3 -rs 0 -dt 3)
|
||||
if (MFEM_USE_SLEPC)
|
||||
set(EX11_ARGS_SINV -m ../../data/star.mesh --useslepc)
|
||||
set(EX11_ARGS_LOBPCG -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg)
|
||||
set(EX11_ARGS_LOBPCG_CUDA -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg_device --device cuda)
|
||||
set(EX11_ARGS_LOBPCG_HIP -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg_device --device hip)
|
||||
set(EX11_ARGS_GD -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_gd)
|
||||
endif()
|
||||
|
||||
# Add the tests: one test per command-line-variable.
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
set(TEST_OPTIONS_VARS
|
||||
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX2_ARGS_BDDC EX2_ARGS_ASM EX3_ARGS
|
||||
EX4_ARGS EX4_HYB_ARGS EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS
|
||||
EX6_ARGS EX6_NONOVL_ARGS EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS
|
||||
EX10_MF_ARGS EX10_MFOP_ARGS EX10_JFNK_ARGS)
|
||||
EX1_ARGS_W EX1_ARGS_P EX2_ARGS EX3_ARGS EX4_ARGS EX4_HYB_ARGS
|
||||
EX5_BDDC_LB_ARGS EX5_BDDC_GB_ARGS EX5_FSPL_ARGS EX6_ARGS EX6_NONOVL_ARGS
|
||||
EX9_E_ARGS EX9_ES_ARGS EX9_IS_ARGS EX10_ARGS)
|
||||
if (MFEM_USE_SLEPC)
|
||||
list(APPEND TEST_OPTIONS_VARS
|
||||
EX11_ARGS_SINV EX11_ARGS_LOBPCG EX11_ARGS_GD)
|
||||
endif()
|
||||
# CUDA/HIP tests
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND TEST_OPTIONS_VARS
|
||||
EX1_ARGS_CUDA EX1_ARGS_CUDAAMG EX9_ES_ARGS_CUDA)
|
||||
if (MFEM_USE_SLEPC)
|
||||
list(APPEND TEST_OPTIONS_VARS EX11_ARGS_LOBPCG_CUDA)
|
||||
endif()
|
||||
elseif (MFEM_USE_HIP)
|
||||
list(APPEND TEST_OPTIONS_VARS
|
||||
EX1_ARGS_HIP EX1_ARGS_HIPAMG EX9_ES_ARGS_HIP)
|
||||
if (MFEM_USE_SLEPC)
|
||||
# SLEPc does not support BVSVEC with HIP
|
||||
# list(APPEND TEST_OPTIONS_VARS EX11_ARGS_LOBPCG_HIP)
|
||||
endif()
|
||||
list(APPEND TEST_OPTIONS_VARS EX11_ARGS_SINV EX11_ARGS_LOBPCG EX11_ARGS_GD)
|
||||
endif()
|
||||
|
||||
foreach(TEST_OPTIONS_VAR ${TEST_OPTIONS_VARS})
|
||||
@@ -145,7 +115,7 @@ if (MFEM_ENABLE_TESTING)
|
||||
|
||||
# All PETSC tests are parallel.
|
||||
if (MFEM_USE_MPI)
|
||||
add_test(NAME ${TEST_NAME_FULL}_np=${MFEM_MPI_NP}
|
||||
add_test(NAME ${TEST_NAME_FULL}_np=4
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:${TEST_NAME}> ${TEST_OPTIONS}
|
||||
|
||||
@@ -7,7 +7,7 @@
|
||||
// mpirun -np 4 ex1p -m ../../data/amr-quad.mesh --petscopts rc_ex1p
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex1p -pa -d cuda --petscopts rc_ex1p_device
|
||||
// mpirun -np 4 ex1p -pa -d cuda --petscopts rc_ex1p_cuda
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// simple finite element discretization of the Laplace problem
|
||||
|
||||
@@ -17,7 +17,7 @@
|
||||
// finite elements (velocity u) and piecewise discontinuous
|
||||
// polynomials (pressure p).
|
||||
//
|
||||
// The example demonstrates the use of the BlockOperator class, as
|
||||
// The example demonstrates the use of the BlockMatrix class, as
|
||||
// well as the collective saving of several grid functions in a
|
||||
// VisIt (visit.llnl.gov) visualization format.
|
||||
//
|
||||
|
||||
@@ -520,10 +520,10 @@ int main(int argc, char *argv[])
|
||||
// Implementation of class FE_Evolution
|
||||
FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
|
||||
const Vector &b_,bool M_in_lhs)
|
||||
: TimeDependentOperator(M_.ParFESpace()->GetTrueVSize(), 0.0,
|
||||
: TimeDependentOperator(M_.Height(), 0.0,
|
||||
M_in_lhs ? TimeDependentOperator::IMPLICIT
|
||||
: TimeDependentOperator::EXPLICIT),
|
||||
b(b_), comm(M_.ParFESpace()->GetComm()), M_solver(comm), z(height),
|
||||
b(b_), comm(M_.ParFESpace()->GetComm()), M_solver(comm), z(M_.Height()),
|
||||
iJacobian(NULL), rJacobian(NULL)
|
||||
{
|
||||
MAlev = M_.GetAssemblyLevel();
|
||||
|
||||
+9
-29
@@ -66,9 +66,7 @@ include $(MFEM_TEST_MK)
|
||||
|
||||
# Testing: Parallel runs
|
||||
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
|
||||
TESTNAME = Parallel PETSc example
|
||||
TESTNAME_CUDA = Parallel CUDA PETSc example
|
||||
TESTNAME_HIP = Parallel HIP PETSc example
|
||||
TESTNAME = Parallel PETSc example
|
||||
%-test-par: %
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME))
|
||||
|
||||
@@ -76,10 +74,8 @@ TESTNAME_HIP = Parallel HIP PETSc example
|
||||
# Testing PETSc execution options.
|
||||
EX1_ARGS_W := -m ../../data/amr-quad.mesh --usepetsc
|
||||
EX1_ARGS_P := -m ../../data/amr-quad.mesh --usepetsc --petscopts rc_ex1p
|
||||
EX1_ARGS_CUDA := -m ../../data/star.mesh --usepetsc --partial-assembly --device cuda --petscopts rc_ex1p_device
|
||||
EX1_ARGS_CUDAAMG := -m ../../data/star.mesh --usepetsc --device cuda --petscopts rc_ex1p_deviceamg
|
||||
EX1_ARGS_HIP := -m ../../data/star.mesh --usepetsc --partial-assembly --device hip --petscopts rc_ex1p_device
|
||||
EX1_ARGS_HIPAMG := -m ../../data/star.mesh --usepetsc --device hip --petscopts rc_ex1p_deviceamg
|
||||
EX1_ARGS_CUDA := -m ../../data/star.mesh --usepetsc --partial-assembly --device cuda --petscopts rc_ex1p_cuda
|
||||
EX1_ARGS_CUDAAMG := -m ../../data/star.mesh --usepetsc --device cuda --petscopts rc_ex1p_cudaamg
|
||||
EX2_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex2p
|
||||
EX2_ARGS_BDDC := -m ../../data/beam-tri.mesh --usepetsc --nonoverlapping --petscopts rc_ex2p_bddc
|
||||
EX2_ARGS_ASM := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex2p_asm
|
||||
@@ -93,8 +89,7 @@ EX6_ARGS := -m ../../data/amr-quad.mesh --usepetsc
|
||||
EX6_NONOVL_ARGS := -m ../../data/amr-quad.mesh --usepetsc --nonoverlapping
|
||||
EX9_E_ARGS := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl -dt 0.1
|
||||
EX9_ES_ARGS := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl --no-step
|
||||
EX9_ES_ARGS_CUDA := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl_device --no-step --partial-assembly --device cuda
|
||||
EX9_ES_ARGS_HIP := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl_device --no-step --partial-assembly --device hip
|
||||
EX9_ES_ARGS_CUDA := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl_cuda --no-step --partial-assembly --device cuda
|
||||
EX9_IS_ARGS := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_impl --implicit -tf 0.5
|
||||
EX10_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p -tf 30 -s 3 -rs 2 -dt 3
|
||||
EX10_MF_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mf -tf 6 -s 3 -rs 0 -dt 3
|
||||
@@ -102,20 +97,15 @@ EX10_MFOP_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_
|
||||
EX10_JFNK_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_jfnk --jfnk -tf 6 -s 3 -rs 0 -dt 3
|
||||
EX11_ARGS_SINV := -m ../../data/star.mesh --useslepc
|
||||
EX11_ARGS_LOBPCG := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg
|
||||
EX11_ARGS_LOBPCG_CUDA := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg_device --device cuda
|
||||
EX11_ARGS_LOBPCG_HIP := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg_device --device hip
|
||||
EX11_ARGS_LOBPCG_CUDA := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_lobpcg_cuda --device cuda
|
||||
EX11_ARGS_GD := -m ../../data/star.mesh --useslepc --slepcopts rc_ex11p_gd
|
||||
|
||||
ex1p-test-par: ex1p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_W))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_P))
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_CUDA),$(EX1_ARGS_CUDA))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_CUDA),$(EX1_ARGS_CUDAAMG))
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_HIP),$(EX1_ARGS_HIP))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_HIP),$(EX1_ARGS_HIPAMG))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_CUDA))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_CUDAAMG))
|
||||
endif
|
||||
ex2p-test-par: ex2p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX2_ARGS))
|
||||
@@ -138,10 +128,7 @@ ex9p-test-par: ex9p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX9_ES_ARGS))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX9_IS_ARGS))
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_CUDA),$(EX9_ES_ARGS_CUDA))
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_HIP),$(EX9_ES_ARGS_HIP))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX9_ES_ARGS_CUDA))
|
||||
endif
|
||||
ex10p-test-par: ex10p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_ARGS))
|
||||
@@ -153,12 +140,8 @@ ex11p-test-par: ex11p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_SINV))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_LOBPCG))
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_CUDA),$(EX11_ARGS_LOBPCG_CUDA))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_LOBPCG_CUDA))
|
||||
endif
|
||||
# SLEPc does not support BVSVEC with HIP
|
||||
#ifeq ($(MFEM_USE_HIP),YES)
|
||||
# @$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME_HIP),$(EX11_ARGS_LOBPCG_HIP))
|
||||
#endif
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX11_ARGS_GD))
|
||||
endif
|
||||
|
||||
@@ -173,9 +156,6 @@ clean: clean-build clean-exec
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
ifneq ($(SRC),)
|
||||
rm -f $(RC_FILES)
|
||||
endif
|
||||
|
||||
clean-exec:
|
||||
@rm -rf mesh.* sol.* sol_p.* sol_u.* Example5*
|
||||
|
||||
@@ -68,43 +68,11 @@ if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME ${TEST_NAME}_ser
|
||||
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
|
||||
else()
|
||||
add_test(NAME ${TEST_NAME}_np=${MFEM_MPI_NP}
|
||||
add_test(NAME ${TEST_NAME}_np=4
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endforeach()
|
||||
|
||||
# Add CUDA/HIP tests.
|
||||
set(DEVICE_EXAMPLES
|
||||
# serial examples with device support:
|
||||
ex9
|
||||
# parallel examples with device support:
|
||||
ex9p)
|
||||
set(MFEM_TEST_DEVICE)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_TEST_DEVICE "cuda")
|
||||
elseif (MFEM_USE_HIP)
|
||||
set(MFEM_TEST_DEVICE "hip")
|
||||
endif()
|
||||
if (MFEM_TEST_DEVICE)
|
||||
foreach(TEST_NAME ${DEVICE_EXAMPLES})
|
||||
string(TOUPPER ${TEST_NAME} UP_TEST_NAME)
|
||||
|
||||
set(THIS_TEST_OPTIONS "-no-vis" "-d" "${MFEM_TEST_DEVICE}")
|
||||
list(APPEND THIS_TEST_OPTIONS ${${UP_TEST_NAME}_TEST_OPTS})
|
||||
|
||||
if (NOT (${TEST_NAME} MATCHES ".*p$"))
|
||||
add_test(NAME ${PFX}${TEST_NAME}_${MFEM_TEST_DEVICE}_ser
|
||||
COMMAND ${PFX}${TEST_NAME} ${THIS_TEST_OPTIONS})
|
||||
else()
|
||||
add_test(NAME ${PFX}${TEST_NAME}_${MFEM_TEST_DEVICE}_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:${PFX}${TEST_NAME}> ${THIS_TEST_OPTIONS}
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endforeach()
|
||||
endif(MFEM_TEST_DEVICE)
|
||||
endif(MFEM_ENABLE_TESTING)
|
||||
endif()
|
||||
|
||||
@@ -12,7 +12,8 @@ use of MFEM features based on the SUNDIALS suite of time integration and
|
||||
non-linear solvers.
|
||||
|
||||
To build these examples, make sure that MFEM is configured with the option
|
||||
"MFEM_USE_SUNDIALS = YES", see the top-level INSTALL file for details.
|
||||
"MFEM_USE_SUNDIALS = YES", see the top-level INSTALL file for details (version
|
||||
2.7 or higher of SUNDIALS is required).
|
||||
|
||||
We recommend comparing the original example codes with the corresponding files
|
||||
in the current directory.
|
||||
|
||||
@@ -280,16 +280,15 @@ int main(int argc, char *argv[])
|
||||
k.SetAssemblyLevel(AssemblyLevel::FULL);
|
||||
}
|
||||
m.AddDomainIntegrator(new MassIntegrator);
|
||||
constexpr double alpha = -1.0;
|
||||
k.AddDomainIntegrator(new ConvectionIntegrator(velocity, alpha));
|
||||
k.AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
|
||||
k.AddInteriorFaceIntegrator(
|
||||
new NonconservativeDGTraceIntegrator(velocity, alpha));
|
||||
new TransposeIntegrator(new DGTraceIntegrator(velocity, 1.0, -0.5)));
|
||||
k.AddBdrFaceIntegrator(
|
||||
new NonconservativeDGTraceIntegrator(velocity, alpha));
|
||||
new TransposeIntegrator(new DGTraceIntegrator(velocity, 1.0, -0.5)));
|
||||
|
||||
LinearForm b(&fes);
|
||||
b.AddBdrFaceIntegrator(
|
||||
new BoundaryFlowIntegrator(inflow, velocity, alpha));
|
||||
new BoundaryFlowIntegrator(inflow, velocity, -1.0, -0.5));
|
||||
|
||||
m.Assemble();
|
||||
int skip_zeros = 0;
|
||||
@@ -476,8 +475,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Implementation of class FE_Evolution
|
||||
FE_Evolution::FE_Evolution(BilinearForm &M_, BilinearForm &K_, const Vector &b_)
|
||||
: TimeDependentOperator(M_.FESpace()->GetTrueVSize()),
|
||||
M(M_), K(K_), b(b_), z(height)
|
||||
: TimeDependentOperator(M_.Height()), M(M_), K(K_), b(b_), z(M_.Height())
|
||||
{
|
||||
Array<int> ess_tdof_list;
|
||||
if (M.GetAssemblyLevel() == AssemblyLevel::LEGACY)
|
||||
|
||||
+24
-116
@@ -63,66 +63,6 @@ double inflow_function(const Vector &x);
|
||||
// Mesh bounding box
|
||||
Vector bb_min, bb_max;
|
||||
|
||||
// Type of preconditioner for implicit time integrator
|
||||
enum class PrecType : int
|
||||
{
|
||||
ILU = 0,
|
||||
AIR = 1
|
||||
};
|
||||
|
||||
#if MFEM_HYPRE_VERSION >= 21800
|
||||
// Algebraic multigrid preconditioner for advective problems based on
|
||||
// approximate ideal restriction (AIR). Most effective when matrix is
|
||||
// first scaled by DG block inverse, and AIR applied to scaled matrix.
|
||||
// See https://doi.org/10.1137/17M1144350.
|
||||
class AIR_prec : public Solver
|
||||
{
|
||||
private:
|
||||
const HypreParMatrix *A;
|
||||
// Copy of A scaled by block-diagonal inverse
|
||||
HypreParMatrix A_s;
|
||||
|
||||
HypreBoomerAMG *AIR_solver;
|
||||
int blocksize;
|
||||
|
||||
public:
|
||||
AIR_prec(int blocksize_) : AIR_solver(NULL), blocksize(blocksize_) { }
|
||||
|
||||
void SetOperator(const Operator &op)
|
||||
{
|
||||
width = op.Width();
|
||||
height = op.Height();
|
||||
|
||||
A = dynamic_cast<const HypreParMatrix *>(&op);
|
||||
MFEM_VERIFY(A != NULL, "AIR_prec requires a HypreParMatrix.")
|
||||
|
||||
// Scale A by block-diagonal inverse
|
||||
BlockInverseScale(A, &A_s, NULL, NULL, blocksize,
|
||||
BlockInverseScaleJob::MATRIX_ONLY);
|
||||
delete AIR_solver;
|
||||
AIR_solver = new HypreBoomerAMG(A_s);
|
||||
AIR_solver->SetAdvectiveOptions(1, "", "FA");
|
||||
AIR_solver->SetPrintLevel(0);
|
||||
AIR_solver->SetMaxLevels(50);
|
||||
}
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
// Scale the rhs by block inverse and solve system
|
||||
HypreParVector z_s;
|
||||
BlockInverseScale(A, NULL, &x, &z_s, blocksize,
|
||||
BlockInverseScaleJob::RHS_ONLY);
|
||||
AIR_solver->Mult(z_s, y);
|
||||
}
|
||||
|
||||
~AIR_prec()
|
||||
{
|
||||
delete AIR_solver;
|
||||
}
|
||||
};
|
||||
#endif
|
||||
|
||||
|
||||
class DG_Solver : public Solver
|
||||
{
|
||||
private:
|
||||
@@ -130,37 +70,24 @@ private:
|
||||
SparseMatrix M_diag;
|
||||
HypreParMatrix *A;
|
||||
GMRESSolver linear_solver;
|
||||
Solver *prec;
|
||||
BlockILU prec;
|
||||
double dt;
|
||||
public:
|
||||
DG_Solver(HypreParMatrix &M_, HypreParMatrix &K_, const FiniteElementSpace &fes,
|
||||
PrecType prec_type)
|
||||
DG_Solver(HypreParMatrix &M_, HypreParMatrix &K_, const FiniteElementSpace &fes)
|
||||
: M(M_),
|
||||
K(K_),
|
||||
A(NULL),
|
||||
linear_solver(M.GetComm()),
|
||||
prec(fes.GetFE(0)->GetDof(),
|
||||
BlockILU::Reordering::MINIMUM_DISCARDED_FILL),
|
||||
dt(-1.0)
|
||||
{
|
||||
int block_size = fes.GetFE(0)->GetDof();
|
||||
if (prec_type == PrecType::ILU)
|
||||
{
|
||||
prec = new BlockILU(block_size,
|
||||
BlockILU::Reordering::MINIMUM_DISCARDED_FILL);
|
||||
}
|
||||
else if (prec_type == PrecType::AIR)
|
||||
{
|
||||
#if MFEM_HYPRE_VERSION >= 21800
|
||||
prec = new AIR_prec(block_size);
|
||||
#else
|
||||
MFEM_ABORT("Must have MFEM_HYPRE_VERSION >= 21800 to use AIR.\n");
|
||||
#endif
|
||||
}
|
||||
linear_solver.iterative_mode = false;
|
||||
linear_solver.SetRelTol(1e-9);
|
||||
linear_solver.SetAbsTol(0.0);
|
||||
linear_solver.SetMaxIter(100);
|
||||
linear_solver.SetPrintLevel(0);
|
||||
linear_solver.SetPreconditioner(*prec);
|
||||
linear_solver.SetPreconditioner(prec);
|
||||
|
||||
M.GetDiag(M_diag);
|
||||
}
|
||||
@@ -193,12 +120,10 @@ public:
|
||||
|
||||
~DG_Solver()
|
||||
{
|
||||
delete prec;
|
||||
delete A;
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
/** A time-dependent operator for the right-hand side of the ODE. The DG weak
|
||||
form of du/dt = -v.grad(u) is M du/dt = K u + b, where M and K are the mass
|
||||
and advection matrices, and b describes the flow on the boundary. This can
|
||||
@@ -216,8 +141,7 @@ private:
|
||||
mutable Vector z;
|
||||
|
||||
public:
|
||||
FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_, const Vector &b_,
|
||||
PrecType prec_type);
|
||||
FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_, const Vector &b_);
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
@@ -254,11 +178,6 @@ int main(int argc, char *argv[])
|
||||
bool adios2 = false;
|
||||
bool binary = false;
|
||||
int vis_steps = 5;
|
||||
#if MFEM_HYPRE_VERSION >= 21800
|
||||
PrecType prec_type = PrecType::AIR;
|
||||
#else
|
||||
PrecType prec_type = PrecType::ILU;
|
||||
#endif
|
||||
|
||||
// Relative and absolute tolerances for CVODE and ARKODE.
|
||||
const double reltol = 1e-2, abstol = 1e-2;
|
||||
@@ -299,8 +218,6 @@ int main(int argc, char *argv[])
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
"Time step.");
|
||||
args.AddOption((int *)&prec_type, "-pt", "--prec-type", "Preconditioner for "
|
||||
"implicit solves. 0 for ILU, 1 for pAIR-AMG.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
@@ -321,13 +238,13 @@ int main(int argc, char *argv[])
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (Mpi::Root())
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
if (Mpi::Root())
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
@@ -335,7 +252,7 @@ int main(int argc, char *argv[])
|
||||
// check for valid ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 9)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
@@ -343,7 +260,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
Device device(device_config);
|
||||
if (Mpi::Root()) { device.Print(); }
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 3. Read the serial mesh from the given mesh file on all processors. We can
|
||||
// handle geometrically periodic meshes in this code.
|
||||
@@ -380,7 +297,7 @@ int main(int argc, char *argv[])
|
||||
ParFiniteElementSpace *fes = new ParFiniteElementSpace(pmesh, &fec);
|
||||
|
||||
HYPRE_BigInt global_vSize = fes->GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of unknowns: " << global_vSize << endl;
|
||||
}
|
||||
@@ -411,16 +328,15 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
m->AddDomainIntegrator(new MassIntegrator);
|
||||
constexpr double alpha = -1.0;
|
||||
k->AddDomainIntegrator(new ConvectionIntegrator(velocity, alpha));
|
||||
k->AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
|
||||
k->AddInteriorFaceIntegrator(
|
||||
new NonconservativeDGTraceIntegrator(velocity, alpha));
|
||||
new TransposeIntegrator(new DGTraceIntegrator(velocity, 1.0, -0.5)));
|
||||
k->AddBdrFaceIntegrator(
|
||||
new NonconservativeDGTraceIntegrator(velocity, alpha));
|
||||
new TransposeIntegrator(new DGTraceIntegrator(velocity, 1.0, -0.5)));
|
||||
|
||||
ParLinearForm *b = new ParLinearForm(fes);
|
||||
b->AddBdrFaceIntegrator(
|
||||
new BoundaryFlowIntegrator(inflow, velocity, alpha));
|
||||
new BoundaryFlowIntegrator(inflow, velocity, -1.0, -0.5));
|
||||
|
||||
int skip_zeros = 0;
|
||||
m->Assemble();
|
||||
@@ -519,13 +435,11 @@ int main(int argc, char *argv[])
|
||||
sout.open(vishost, visport);
|
||||
if (!sout)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
{
|
||||
if (myid == 0)
|
||||
cout << "Unable to connect to GLVis server at "
|
||||
<< vishost << ':' << visport << endl;
|
||||
}
|
||||
visualization = false;
|
||||
if (Mpi::Root())
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "GLVis visualization disabled.\n";
|
||||
}
|
||||
@@ -537,17 +451,15 @@ int main(int argc, char *argv[])
|
||||
sout << "solution\n" << *pmesh << *u;
|
||||
sout << "pause\n";
|
||||
sout << flush;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
if (myid == 0)
|
||||
cout << "GLVis visualization paused."
|
||||
<< " Press space (in the GLVis window) to resume it.\n";
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// 9. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and define the ODE solver used for time integration.
|
||||
FE_Evolution adv(*m, *k, *B, prec_type);
|
||||
FE_Evolution adv(*m, *k, *B);
|
||||
|
||||
double t = 0.0;
|
||||
adv.SetTime(t);
|
||||
@@ -599,7 +511,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (done || ti % vis_steps == 0)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "time step: " << ti << ", time: " << t << endl;
|
||||
if (cvode) { cvode->PrintInfo(); }
|
||||
@@ -678,11 +590,11 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Implementation of class FE_Evolution
|
||||
FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
|
||||
const Vector &b_, PrecType prec_type)
|
||||
: TimeDependentOperator(M_.ParFESpace()->GetTrueVSize()),
|
||||
const Vector &b_)
|
||||
: TimeDependentOperator(M_.Height()),
|
||||
b(b_),
|
||||
M_solver(M_.ParFESpace()->GetComm()),
|
||||
z(height)
|
||||
z(M_.Height())
|
||||
{
|
||||
if (M_.GetAssemblyLevel()==AssemblyLevel::LEGACY)
|
||||
{
|
||||
@@ -705,7 +617,7 @@ FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
|
||||
HypreSmoother *hypre_prec = new HypreSmoother(M_mat, HypreSmoother::Jacobi);
|
||||
M_prec = hypre_prec;
|
||||
|
||||
dg_solver = new DG_Solver(M_mat, K_mat, *M_.FESpace(), prec_type);
|
||||
dg_solver = new DG_Solver(M_mat, K_mat, *M_.FESpace());
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -721,10 +633,6 @@ FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
|
||||
M_solver.SetPrintLevel(0);
|
||||
}
|
||||
|
||||
// Solve the equation:
|
||||
// u_t = M^{-1}(Ku + b),
|
||||
// by solving associated linear system
|
||||
// (M - dt*K) d = K*u + b
|
||||
void FE_Evolution::ImplicitSolve(const double dt, const Vector &x, Vector &k)
|
||||
{
|
||||
K->Mult(x, z);
|
||||
|
||||
@@ -23,8 +23,6 @@ MFEM_LIB_FILE = mfem_is_not_built
|
||||
|
||||
SEQ_EXAMPLES = ex9 ex10 ex16
|
||||
PAR_EXAMPLES = ex9p ex10p ex16p
|
||||
SEQ_DEVICE_EXAMPLES = ex9
|
||||
PAR_DEVICE_EXAMPLES = ex9p
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
EXAMPLES = $(SEQ_EXAMPLES)
|
||||
else
|
||||
@@ -56,22 +54,10 @@ include $(MFEM_TEST_MK)
|
||||
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
|
||||
SERIAL_NAME := Serial SUNDIALS example
|
||||
PARALLEL_NAME := Parallel SUNDIALS example
|
||||
SERIAL_CUDA_NAME := Serial SUNDIALS CUDA example
|
||||
PARALLEL_CUDA_NAME := Parallel SUNDIALS CUDA example
|
||||
SERIAL_HIP_NAME := Serial SUNDIALS HIP example
|
||||
PARALLEL_HIP_NAME := Parallel SUNDIALS HIP example
|
||||
%-test-par: %
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME))
|
||||
%-test-seq: %
|
||||
@$(call mfem-test,$<,, $(SERIAL_NAME))
|
||||
%-test-par-cuda: %
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_CUDA_NAME),-d cuda)
|
||||
%-test-seq-cuda: %
|
||||
@$(call mfem-test,$<,, $(SERIAL_CUDA_NAME),-d cuda)
|
||||
%-test-par-hip: %
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_HIP_NAME),-d hip)
|
||||
%-test-seq-hip: %
|
||||
@$(call mfem-test,$<,, $(SERIAL_HIP_NAME),-d hip)
|
||||
|
||||
# Testing: Specific execution options:
|
||||
# Example 9: test CVODE with CV_ADAMS (non-stiff implicit) time stepping
|
||||
@@ -82,16 +68,6 @@ ex9-test-seq: ex9
|
||||
@$(call mfem-test,$<,, $(SERIAL_NAME),$(EX9_ARGS))
|
||||
ex9p-test-par: ex9p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME),$(EX9P_ARGS))
|
||||
ex9-test-seq-cuda: ex9
|
||||
@$(call mfem-test,$<,, $(SERIAL_CUDA_NAME),-d cuda $(EX9_ARGS))
|
||||
ex9p-test-par-cuda: ex9p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_CUDA_NAME),-d cuda \
|
||||
$(EX9P_ARGS))
|
||||
ex9-test-seq-hip: ex9
|
||||
@$(call mfem-test,$<,, $(SERIAL_HIP_NAME),-d hip $(EX9_ARGS))
|
||||
ex9p-test-par-hip: ex9p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_HIP_NAME),-d hip \
|
||||
$(EX9P_ARGS))
|
||||
# Example 10: test CVODE with CV_BDF (stiff implicit) time stepping
|
||||
EX10_COMMON_ARGS := -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10
|
||||
EX10_ARGS := $(EX10_COMMON_ARGS) -r 2
|
||||
|
||||
@@ -67,7 +67,6 @@ int main(int argc, char *argv[])
|
||||
int slu_colperm = 4;
|
||||
int slu_rowperm = 1;
|
||||
int slu_iterref = 2;
|
||||
int slu_npdep = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -86,11 +85,9 @@ int main(int argc, char *argv[])
|
||||
"6-ZOLTAN");
|
||||
args.AddOption(&slu_rowperm, "-rp", "--rowperm",
|
||||
"SuperLU Row Permutation Method: 0-NOROWPERM, 1-LargeDiag");
|
||||
args.AddOption(&slu_iterref, "-ir", "--iterref",
|
||||
args.AddOption(&slu_iterref, "-rp", "--rowperm",
|
||||
"SuperLU Iterative Refinement: 0-NOREFINE, 1-Single, "
|
||||
"2-Double, 3-Extra");
|
||||
args.AddOption(&slu_npdep, "-npdep", "--npdepth",
|
||||
"Depth of 3D parition for SuperLU (>= 7.2.0)");
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
@@ -217,7 +214,7 @@ int main(int argc, char *argv[])
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 13. Solve the linear system A X = B utilizing SuperLU.
|
||||
SuperLUSolver *superlu = new SuperLUSolver(MPI_COMM_WORLD, slu_npdep);
|
||||
SuperLUSolver *superlu = new SuperLUSolver(MPI_COMM_WORLD);
|
||||
Operator *SLU_A = new SuperLURowLocMatrix(*A.As<HypreParMatrix>());
|
||||
superlu->SetPrintStatistics(true);
|
||||
superlu->SetSymmetricPattern(false);
|
||||
@@ -284,9 +281,10 @@ int main(int argc, char *argv[])
|
||||
superlu->SetOperator(*SLU_A);
|
||||
superlu->SetPrintStatistics(true);
|
||||
superlu->Mult(B, X);
|
||||
superlu->DismantleGrid();
|
||||
|
||||
delete superlu;
|
||||
delete SLU_A;
|
||||
delete superlu;
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
|
||||
+28
-48
@@ -13,45 +13,28 @@ set(SRCS
|
||||
bilinearform.cpp
|
||||
bilinearform_ext.cpp
|
||||
bilininteg.cpp
|
||||
integ/bilininteg_br2.cpp
|
||||
integ/bilininteg_convection_mf.cpp
|
||||
integ/bilininteg_convection_pa.cpp
|
||||
integ/bilininteg_convection_ea.cpp
|
||||
integ/bilininteg_curlcurl_pa.cpp
|
||||
integ/bilininteg_dgtrace_pa.cpp
|
||||
integ/bilininteg_dgtrace_ea.cpp
|
||||
integ/bilininteg_diffusion_mf.cpp
|
||||
integ/bilininteg_diffusion_pa.cpp
|
||||
integ/bilininteg_diffusion_ea.cpp
|
||||
integ/bilininteg_diffusion_patch.cpp
|
||||
integ/bilininteg_divdiv_pa.cpp
|
||||
integ/bilininteg_gradient_pa.cpp
|
||||
integ/bilininteg_interp_pa.cpp
|
||||
integ/bilininteg_mass_mf.cpp
|
||||
integ/bilininteg_mass_pa.cpp
|
||||
integ/bilininteg_mass_ea.cpp
|
||||
integ/bilininteg_mixedcurl_pa.cpp
|
||||
integ/bilininteg_mixedvecgrad_pa.cpp
|
||||
integ/bilininteg_transpose_ea.cpp
|
||||
integ/bilininteg_vecdiffusion_mf.cpp
|
||||
integ/bilininteg_vecdiffusion_pa.cpp
|
||||
integ/bilininteg_vecdiv_pa.cpp
|
||||
integ/bilininteg_vecmass_mf.cpp
|
||||
integ/bilininteg_vecmass_pa.cpp
|
||||
integ/bilininteg_vectorfediv_pa.cpp
|
||||
integ/bilininteg_vectorfemass_pa.cpp
|
||||
integ/bilininteg_diffusion_kernels.cpp
|
||||
integ/bilininteg_hcurl_kernels.cpp
|
||||
integ/bilininteg_hdiv_kernels.cpp
|
||||
integ/bilininteg_hcurlhdiv_kernels.cpp
|
||||
integ/bilininteg_mass_kernels.cpp
|
||||
integ/lininteg_boundary.cpp
|
||||
integ/lininteg_boundary_flux.cpp
|
||||
integ/lininteg_domain.cpp
|
||||
integ/lininteg_domain_grad.cpp
|
||||
integ/lininteg_domain_vectorfe.cpp
|
||||
integ/nonlininteg_vecconvection_pa.cpp
|
||||
integ/nonlininteg_vecconvection_mf.cpp
|
||||
bilininteg_br2.cpp
|
||||
bilininteg_convection_mf.cpp
|
||||
bilininteg_convection_pa.cpp
|
||||
bilininteg_convection_ea.cpp
|
||||
bilininteg_dgtrace_pa.cpp
|
||||
bilininteg_dgtrace_ea.cpp
|
||||
bilininteg_diffusion_mf.cpp
|
||||
bilininteg_diffusion_pa.cpp
|
||||
bilininteg_diffusion_ea.cpp
|
||||
bilininteg_divergence.cpp
|
||||
bilininteg_hcurl.cpp
|
||||
bilininteg_hdiv.cpp
|
||||
bilininteg_vectorfe.cpp
|
||||
bilininteg_gradient.cpp
|
||||
bilininteg_mass_mf.cpp
|
||||
bilininteg_mass_pa.cpp
|
||||
bilininteg_mass_ea.cpp
|
||||
bilininteg_transpose_ea.cpp
|
||||
bilininteg_vecdiffusion.cpp
|
||||
bilininteg_vecdiffusion_mf.cpp
|
||||
bilininteg_vecmass.cpp
|
||||
bilininteg_vecmass_mf.cpp
|
||||
coefficient.cpp
|
||||
complex_fem.cpp
|
||||
convergence.cpp
|
||||
@@ -61,7 +44,6 @@ set(SRCS
|
||||
eltrans.cpp
|
||||
estimators.cpp
|
||||
fe.cpp
|
||||
fe/face_map_utils.cpp
|
||||
fe/fe_base.cpp
|
||||
fe/fe_fixed_order.cpp
|
||||
fe/fe_h1.cpp
|
||||
@@ -88,10 +70,12 @@ set(SRCS
|
||||
ceed/solvers/algebraic.cpp
|
||||
ceed/solvers/full-assembly.cpp
|
||||
ceed/solvers/solvers-atpmg.cpp
|
||||
kdtree.cpp
|
||||
linearform.cpp
|
||||
linearform_ext.cpp
|
||||
lininteg.cpp
|
||||
lininteg_boundary.cpp
|
||||
lininteg_domain.cpp
|
||||
lininteg_domain_grad.cpp
|
||||
lor/lor.cpp
|
||||
lor/lor_ads.cpp
|
||||
lor/lor_ams.cpp
|
||||
@@ -104,6 +88,8 @@ set(SRCS
|
||||
nonlinearform_ext.cpp
|
||||
nonlininteg.cpp
|
||||
fespacehierarchy.cpp
|
||||
nonlininteg_vectorconvection.cpp
|
||||
nonlininteg_vectorconvection_mf.cpp
|
||||
qfunction.cpp
|
||||
qinterp/det.cpp
|
||||
qinterp/eval_by_nodes.cpp
|
||||
@@ -154,11 +140,7 @@ set(HDRS
|
||||
bilinearform.hpp
|
||||
bilinearform_ext.hpp
|
||||
bilininteg.hpp
|
||||
integ/bilininteg_diffusion_kernels.hpp
|
||||
integ/bilininteg_hcurl_kernels.hpp
|
||||
integ/bilininteg_hdiv_kernels.hpp
|
||||
integ/bilininteg_hcurlhdiv_kernels.hpp
|
||||
integ/bilininteg_mass_kernels.hpp
|
||||
bilininteg_mass_pa.hpp
|
||||
coefficient.hpp
|
||||
complex_fem.hpp
|
||||
convergence.hpp
|
||||
@@ -169,7 +151,6 @@ set(HDRS
|
||||
eltrans.hpp
|
||||
estimators.hpp
|
||||
fe.hpp
|
||||
fe/face_map_utils.hpp
|
||||
fe/fe_base.hpp
|
||||
fe/fe_fixed_order.hpp
|
||||
fe/fe_h1.hpp
|
||||
@@ -200,7 +181,6 @@ set(HDRS
|
||||
ceed/solvers/algebraic.hpp
|
||||
ceed/solvers/full-assembly.hpp
|
||||
ceed/solvers/solvers-atpmg.hpp
|
||||
kdtree.hpp
|
||||
linearform.hpp
|
||||
linearform_ext.hpp
|
||||
lininteg.hpp
|
||||
|
||||
+2
-48
@@ -13,7 +13,6 @@
|
||||
|
||||
#include "fem.hpp"
|
||||
#include "../general/device.hpp"
|
||||
#include "../mesh/nurbs.hpp"
|
||||
#include <cmath>
|
||||
|
||||
namespace mfem
|
||||
@@ -422,17 +421,11 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
"invalid element marker for domain integrator #"
|
||||
<< k << ", counting from zero");
|
||||
}
|
||||
|
||||
if (domain_integs[k]->Patchwise())
|
||||
{
|
||||
MFEM_VERIFY(fes->GetNURBSext(), "Patchwise integration requires a "
|
||||
<< "NURBS FE space");
|
||||
}
|
||||
}
|
||||
|
||||
// Element-wise integration
|
||||
for (int i = 0; i < fes -> GetNE(); i++)
|
||||
{
|
||||
int elem_attr = fes->GetMesh()->GetAttribute(i);
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
if (element_matrices)
|
||||
{
|
||||
@@ -440,13 +433,11 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
}
|
||||
else
|
||||
{
|
||||
const int elem_attr = fes->GetMesh()->GetAttribute(i);
|
||||
elmat.SetSize(0);
|
||||
for (int k = 0; k < domain_integs.Size(); k++)
|
||||
{
|
||||
if ((domain_integs_marker[k] == NULL ||
|
||||
if ( domain_integs_marker[k] == NULL ||
|
||||
(*(domain_integs_marker[k]))[elem_attr-1] == 1)
|
||||
&& !domain_integs[k]->Patchwise())
|
||||
{
|
||||
const FiniteElement &fe = *fes->GetFE(i);
|
||||
eltrans = fes->GetElementTransformation(i);
|
||||
@@ -488,43 +479,6 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Patch-wise integration
|
||||
if (fes->GetNURBSext())
|
||||
{
|
||||
for (int p=0; p<mesh->NURBSext->GetNP(); ++p)
|
||||
{
|
||||
bool vdofsSet = false;
|
||||
for (int k = 0; k < domain_integs.Size(); k++)
|
||||
{
|
||||
if (domain_integs[k]->Patchwise())
|
||||
{
|
||||
if (!vdofsSet)
|
||||
{
|
||||
fes->GetPatchVDofs(p, vdofs);
|
||||
vdofsSet = true;
|
||||
}
|
||||
|
||||
SparseMatrix* spmat = nullptr;
|
||||
domain_integs[k]->AssemblePatchMatrix(p, *fes, spmat);
|
||||
Array<int> cols;
|
||||
Vector srow;
|
||||
|
||||
for (int r=0; r<spmat->Height(); ++r)
|
||||
{
|
||||
spmat->GetRow(r, cols, srow);
|
||||
for (int i=0; i<cols.Size(); ++i)
|
||||
{
|
||||
cols[i] = vdofs[cols[i]];
|
||||
}
|
||||
mat->AddRow(vdofs[r], cols, srow);
|
||||
}
|
||||
|
||||
delete spmat;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (boundary_integs.Size())
|
||||
|
||||
@@ -254,12 +254,6 @@ public:
|
||||
/// Access all the integrators added with AddDomainIntegrator().
|
||||
Array<BilinearFormIntegrator*> *GetDBFI() { return &domain_integs; }
|
||||
|
||||
/// @brief Access all boundary markers added with AddDomainIntegrator().
|
||||
///
|
||||
/// If no marker was specified when the integrator was added, the
|
||||
/// corresponding pointer (to Array<int>) will be NULL. */
|
||||
Array<Array<int>*> *GetDBFI_Marker() { return &domain_integs_marker; }
|
||||
|
||||
/// Access all the integrators added with AddBoundaryIntegrator().
|
||||
Array<BilinearFormIntegrator*> *GetBBFI() { return &boundary_integs; }
|
||||
/** @brief Access all boundary markers added with AddBoundaryIntegrator().
|
||||
@@ -458,7 +452,7 @@ public:
|
||||
practice it is convenient to have it in transposed form for
|
||||
construction of RAP operators in matrix-free methods. */
|
||||
virtual const Operator *GetOutputRestrictionTranspose() const
|
||||
{ return fes->GetRestrictionTransposeOperator(); }
|
||||
{ return GetOutputProlongation(); }
|
||||
/// Get the output finite element space restriction matrix
|
||||
virtual const Operator *GetOutputRestriction() const
|
||||
{ return GetRestriction(); }
|
||||
|
||||
+57
-248
@@ -56,9 +56,6 @@ void MFBilinearFormExtension::Assemble()
|
||||
{
|
||||
integrators[i]->AssembleMF(*a->FESpace());
|
||||
}
|
||||
|
||||
MFEM_VERIFY(a->GetBBFI()->Size() == 0, "AddBoundaryIntegrator is not "
|
||||
"currently supported in MFBilinearFormExtension");
|
||||
}
|
||||
|
||||
void MFBilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
@@ -264,14 +261,6 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
localX.SetSize(elem_restrict->Height(), Device::GetDeviceMemoryType());
|
||||
localY.SetSize(elem_restrict->Height(), Device::GetDeviceMemoryType());
|
||||
localY.UseDevice(true); // ensure 'localY = 0.0' is done on device
|
||||
|
||||
// Gather the attributes on the host from all the elements
|
||||
const Mesh &mesh = *trial_fes->GetMesh();
|
||||
elem_attributes.SetSize(mesh.GetNE());
|
||||
for (int i = 0; i < mesh.GetNE(); ++i)
|
||||
{
|
||||
elem_attributes[i] = mesh.GetAttribute(i);
|
||||
}
|
||||
}
|
||||
|
||||
// Construct face restriction operators only if the bilinear form has
|
||||
@@ -286,9 +275,7 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
int_face_Y.UseDevice(true); // ensure 'int_face_Y = 0.0' is done on device
|
||||
}
|
||||
|
||||
const bool has_bdr_integs = (a->GetBFBFI()->Size() > 0 ||
|
||||
a->GetBBFI()->Size() > 0);
|
||||
if (bdr_face_restrict_lex == NULL && has_bdr_integs)
|
||||
if (bdr_face_restrict_lex == NULL && a->GetBFBFI()->Size() > 0)
|
||||
{
|
||||
bdr_face_restrict_lex = trial_fes->GetFaceRestriction(
|
||||
ElementDofOrdering::LEXICOGRAPHIC,
|
||||
@@ -297,46 +284,6 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
bdr_face_X.SetSize(bdr_face_restrict_lex->Height(), Device::GetMemoryType());
|
||||
bdr_face_Y.SetSize(bdr_face_restrict_lex->Height(), Device::GetMemoryType());
|
||||
bdr_face_Y.UseDevice(true); // ensure 'faceBoundY = 0.0' is done on device
|
||||
|
||||
const Mesh &mesh = *trial_fes->GetMesh();
|
||||
// See LinearFormExtension::Update for explanation of f_to_be logic.
|
||||
std::unordered_map<int,int> f_to_be;
|
||||
for (int i = 0; i < mesh.GetNBE(); ++i)
|
||||
{
|
||||
const int f = mesh.GetBdrElementEdgeIndex(i);
|
||||
f_to_be[f] = i;
|
||||
}
|
||||
const int nf_bdr = trial_fes->GetNFbyType(FaceType::Boundary);
|
||||
bdr_attributes.SetSize(nf_bdr);
|
||||
int f_ind = 0;
|
||||
int missing_bdr_elems = 0;
|
||||
for (int f = 0; f < mesh.GetNumFaces(); ++f)
|
||||
{
|
||||
if (!mesh.GetFaceInformation(f).IsOfFaceType(FaceType::Boundary))
|
||||
{
|
||||
continue;
|
||||
}
|
||||
int attribute = 1; // default value
|
||||
if (f_to_be.find(f) != f_to_be.end())
|
||||
{
|
||||
const int be = f_to_be[f];
|
||||
attribute = mesh.GetBdrAttribute(be);
|
||||
}
|
||||
else
|
||||
{
|
||||
// If a boundary face does not correspond to the a boundary element,
|
||||
// we assign it the default attribute of 1. We also generate a
|
||||
// warning at runtime with the number of such missing elements.
|
||||
++missing_bdr_elems;
|
||||
}
|
||||
bdr_attributes[f_ind] = attribute;
|
||||
++f_ind;
|
||||
}
|
||||
if (missing_bdr_elems)
|
||||
{
|
||||
MFEM_WARNING("Missing " << missing_bdr_elems << " boundary elements "
|
||||
"for boundary faces.");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -345,36 +292,27 @@ void PABilinearFormExtension::Assemble()
|
||||
SetupRestrictionOperators(L2FaceValues::DoubleValued);
|
||||
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
for (BilinearFormIntegrator *integ : integrators)
|
||||
const int integratorCount = integrators.Size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
if (integ->Patchwise())
|
||||
{
|
||||
MFEM_VERIFY(a->FESpace()->GetNURBSext(),
|
||||
"Patchwise integration requires a NURBS FE space");
|
||||
integ->AssembleNURBSPA(*a->FESpace());
|
||||
}
|
||||
else
|
||||
{
|
||||
integ->AssemblePA(*a->FESpace());
|
||||
}
|
||||
integrators[i]->AssemblePA(*a->FESpace());
|
||||
}
|
||||
|
||||
Array<BilinearFormIntegrator*> &bdr_integrators = *a->GetBBFI();
|
||||
for (BilinearFormIntegrator *integ : bdr_integrators)
|
||||
{
|
||||
integ->AssemblePABoundary(*a->FESpace());
|
||||
}
|
||||
MFEM_VERIFY(a->GetBBFI()->Size() == 0,
|
||||
"Partial assembly does not support AddBoundaryIntegrator yet.");
|
||||
|
||||
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
|
||||
for (BilinearFormIntegrator *integ : intFaceIntegrators)
|
||||
const int intFaceIntegratorCount = intFaceIntegrators.Size();
|
||||
for (int i = 0; i < intFaceIntegratorCount; ++i)
|
||||
{
|
||||
integ->AssemblePAInteriorFaces(*a->FESpace());
|
||||
intFaceIntegrators[i]->AssemblePAInteriorFaces(*a->FESpace());
|
||||
}
|
||||
|
||||
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
|
||||
for (BilinearFormIntegrator *integ : bdrFaceIntegrators)
|
||||
const int boundFaceIntegratorCount = bdrFaceIntegrators.Size();
|
||||
for (int i = 0; i < boundFaceIntegratorCount; ++i)
|
||||
{
|
||||
integ->AssemblePABoundaryFaces(*a->FESpace());
|
||||
bdrFaceIntegrators[i]->AssemblePABoundaryFaces(*a->FESpace());
|
||||
}
|
||||
}
|
||||
|
||||
@@ -385,27 +323,20 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
const int iSz = integrators.Size();
|
||||
if (elem_restrict && !DeviceCanUseCeed())
|
||||
{
|
||||
if (iSz > 0)
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
integrators[i]->AssembleDiagonalPA(localY);
|
||||
}
|
||||
const ElementRestriction* H1elem_restrict =
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
if (H1elem_restrict)
|
||||
{
|
||||
H1elem_restrict->MultTransposeUnsigned(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
integrators[i]->AssembleDiagonalPA(localY);
|
||||
}
|
||||
const ElementRestriction* H1elem_restrict =
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
if (H1elem_restrict)
|
||||
{
|
||||
H1elem_restrict->MultTransposeUnsigned(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
y = 0.0;
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -417,18 +348,6 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
integrators[i]->AssembleDiagonalPA(y);
|
||||
}
|
||||
}
|
||||
|
||||
Array<BilinearFormIntegrator*> &bdr_integs = *a->GetBBFI();
|
||||
const int n_bdr_integs = bdr_integs.Size();
|
||||
if (bdr_face_restrict_lex && n_bdr_integs > 0)
|
||||
{
|
||||
bdr_face_Y = 0.0;
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
{
|
||||
bdr_integs[i]->AssembleDiagonalPA(bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeUnsigned(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::Update()
|
||||
@@ -467,59 +386,24 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
|
||||
const int iSz = integrators.Size();
|
||||
|
||||
bool allPatchwise = true;
|
||||
bool somePatchwise = false;
|
||||
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
if (integrators[i]->Patchwise())
|
||||
{
|
||||
somePatchwise = true;
|
||||
}
|
||||
else
|
||||
{
|
||||
allPatchwise = false;
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_VERIFY(!(somePatchwise && !allPatchwise),
|
||||
"All or none of the integrators should be patchwise");
|
||||
|
||||
if (DeviceCanUseCeed() || !elem_restrict || allPatchwise)
|
||||
if (DeviceCanUseCeed() || !elem_restrict)
|
||||
{
|
||||
y.UseDevice(true); // typically this is a large vector, so store on device
|
||||
y = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
if (integrators[i]->Patchwise())
|
||||
{
|
||||
integrators[i]->AddMultNURBSPA(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
integrators[i]->AddMultPA(x, y);
|
||||
}
|
||||
integrators[i]->AddMultPA(x, y);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (iSz)
|
||||
elem_restrict->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
Array<Array<int>*> &elem_markers = *a->GetDBFI_Marker();
|
||||
elem_restrict->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i], elem_attributes,
|
||||
false, localY);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
y = 0.0;
|
||||
integrators[i]->AddMultPA(localX, localY);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
|
||||
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
|
||||
@@ -538,28 +422,17 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
Array<BilinearFormIntegrator*> &bdr_integs = *a->GetBBFI();
|
||||
Array<BilinearFormIntegrator*> &bdr_face_integs = *a->GetBFBFI();
|
||||
const int n_bdr_integs = bdr_integs.Size();
|
||||
const int n_bdr_face_integs = bdr_face_integs.Size();
|
||||
const bool has_bdr_integs = (n_bdr_face_integs > 0 || n_bdr_integs > 0);
|
||||
if (bdr_face_restrict_lex && has_bdr_integs)
|
||||
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
|
||||
const int bFISz = bdrFaceIntegrators.Size();
|
||||
if (bdr_face_restrict_lex && bFISz>0)
|
||||
{
|
||||
Array<Array<int>*> &bdr_markers = *a->GetBBFI_Marker();
|
||||
Array<Array<int>*> &bdr_face_markers = *a->GetBFBFI_Marker();
|
||||
bdr_face_restrict_lex->Mult(x, bdr_face_X);
|
||||
if (bdr_face_X.Size()>0)
|
||||
{
|
||||
bdr_face_Y = 0.0;
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
for (int i = 0; i < bFISz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i], bdr_attributes,
|
||||
false, bdr_face_Y);
|
||||
}
|
||||
for (int i = 0; i < n_bdr_face_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X, bdr_face_markers[i],
|
||||
bdr_attributes, false, bdr_face_Y);
|
||||
bdrFaceIntegrators[i]->AddMultPA(bdr_face_X, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
@@ -572,13 +445,11 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
const int iSz = integrators.Size();
|
||||
if (elem_restrict)
|
||||
{
|
||||
Array<Array<int>*> &elem_markers = *a->GetDBFI_Marker();
|
||||
elem_restrict->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i], elem_attributes,
|
||||
true, localY);
|
||||
integrators[i]->AddMultTransposePA(localX, localY);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
@@ -608,85 +479,23 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
Array<BilinearFormIntegrator*> &bdr_integs = *a->GetBBFI();
|
||||
Array<BilinearFormIntegrator*> &bdr_face_integs = *a->GetBFBFI();
|
||||
const int n_bdr_integs = bdr_integs.Size();
|
||||
const int n_bdr_face_integs = bdr_face_integs.Size();
|
||||
const bool has_bdr_integs = (n_bdr_face_integs > 0 || n_bdr_integs > 0);
|
||||
if (bdr_face_restrict_lex && has_bdr_integs)
|
||||
Array<BilinearFormIntegrator*> &bdrFaceIntegrators = *a->GetBFBFI();
|
||||
const int bFISz = bdrFaceIntegrators.Size();
|
||||
if (bdr_face_restrict_lex && bFISz>0)
|
||||
{
|
||||
Array<Array<int>*> &bdr_markers = *a->GetBBFI_Marker();
|
||||
Array<Array<int>*> &bdr_face_markers = *a->GetBFBFI_Marker();
|
||||
|
||||
bdr_face_restrict_lex->Mult(x, bdr_face_X);
|
||||
if (bdr_face_X.Size() > 0)
|
||||
if (bdr_face_X.Size()>0)
|
||||
{
|
||||
bdr_face_Y = 0.0;
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
for (int i = 0; i < bFISz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i], bdr_attributes,
|
||||
true, bdr_face_Y);
|
||||
}
|
||||
for (int i = 0; i < n_bdr_face_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X, bdr_face_markers[i],
|
||||
bdr_attributes, true, bdr_face_Y);
|
||||
bdrFaceIntegrators[i]->AddMultTransposePA(bdr_face_X, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Compute kernels for PABilinearFormExtension::AddMultWithMarkers.
|
||||
// Cannot be in member function with non-public visibility.
|
||||
static void AddWithMarkers_(
|
||||
const int ne,
|
||||
const int nd,
|
||||
const Vector &x,
|
||||
const Array<int> &markers,
|
||||
const Array<int> &attributes,
|
||||
Vector &y)
|
||||
{
|
||||
const auto d_x = Reshape(x.Read(), nd, ne);
|
||||
const auto d_m = Reshape(markers.Read(), markers.Size());
|
||||
const auto d_attr = Reshape(attributes.Read(), ne);
|
||||
auto d_y = Reshape(y.ReadWrite(), nd, ne);
|
||||
mfem::forall(ne, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int attr = d_attr[e];
|
||||
if (d_m[attr - 1] == 0) { return; }
|
||||
for (int i = 0; i < nd; ++i)
|
||||
{
|
||||
d_y(i, e) += d_x(i, e);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::AddMultWithMarkers(
|
||||
const BilinearFormIntegrator &integ,
|
||||
const Vector &x,
|
||||
const Array<int> *markers,
|
||||
const Array<int> &attributes,
|
||||
const bool transpose,
|
||||
Vector &y) const
|
||||
{
|
||||
if (markers)
|
||||
{
|
||||
tmp_evec.SetSize(y.Size());
|
||||
tmp_evec = 0.0;
|
||||
if (transpose) { integ.AddMultTransposePA(x, tmp_evec); }
|
||||
else { integ.AddMultPA(x, tmp_evec); }
|
||||
const int ne = attributes.Size();
|
||||
const int nd = x.Size() / ne;
|
||||
AddWithMarkers_(ne, nd, tmp_evec, *markers, attributes, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (transpose) { integ.AddMultTransposePA(x, y); }
|
||||
else { integ.AddMultPA(x, y); }
|
||||
}
|
||||
}
|
||||
|
||||
// Data and methods for element-assembled bilinear forms
|
||||
EABilinearFormExtension::EABilinearFormExtension(BilinearForm *form)
|
||||
: PABilinearFormExtension(form),
|
||||
@@ -787,7 +596,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
auto X = Reshape(useRestrict?localX.Read():x.Read(), NDOFS, ne);
|
||||
auto Y = Reshape(useRestrict?localY.ReadWrite():y.ReadWrite(), NDOFS, ne);
|
||||
auto A = Reshape(ea_data.Read(), NDOFS, NDOFS, ne);
|
||||
mfem::forall(ne*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, ne*NDOFS,
|
||||
{
|
||||
const int e = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -822,7 +631,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
if (!factorize_face_terms)
|
||||
{
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -841,7 +650,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
});
|
||||
}
|
||||
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -878,7 +687,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
auto X = Reshape(bdr_face_X.Read(), NDOFS, nf_bdr);
|
||||
auto Y = Reshape(bdr_face_Y.ReadWrite(), NDOFS, nf_bdr);
|
||||
auto A = Reshape(ea_data_bdr.Read(), NDOFS, NDOFS, nf_bdr);
|
||||
mfem::forall(nf_bdr*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, nf_bdr*NDOFS,
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -915,7 +724,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
auto X = Reshape(useRestrict?localX.Read():x.Read(), NDOFS, ne);
|
||||
auto Y = Reshape(useRestrict?localY.ReadWrite():y.ReadWrite(), NDOFS, ne);
|
||||
auto A = Reshape(ea_data.Read(), NDOFS, NDOFS, ne);
|
||||
mfem::forall(ne*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, ne*NDOFS,
|
||||
{
|
||||
const int e = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -950,7 +759,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
if (!factorize_face_terms)
|
||||
{
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -969,7 +778,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
});
|
||||
}
|
||||
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, nf_int*NDOFS,
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -1006,7 +815,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
auto X = Reshape(bdr_face_X.Read(), NDOFS, nf_bdr);
|
||||
auto Y = Reshape(bdr_face_Y.ReadWrite(), NDOFS, nf_bdr);
|
||||
auto A = Reshape(ea_data_bdr.Read(), NDOFS, NDOFS, nf_bdr);
|
||||
mfem::forall(nf_bdr*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
MFEM_FORALL(glob_j, nf_bdr*NDOFS,
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
@@ -1221,13 +1030,13 @@ void FABilinearFormExtension::DGMult(const Vector &x, Vector &y) const
|
||||
const int local_size = a->FESpace()->GetVSize();
|
||||
auto dg_x_ptr = dg_x.Write();
|
||||
auto x_ptr = x.Read();
|
||||
mfem::forall(local_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i,local_size,
|
||||
{
|
||||
dg_x_ptr[i] = x_ptr[i];
|
||||
});
|
||||
const int shared_size = shared_x.Size();
|
||||
auto shared_x_ptr = shared_x.Read();
|
||||
mfem::forall(shared_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i,shared_size,
|
||||
{
|
||||
dg_x_ptr[local_size+i] = shared_x_ptr[i];
|
||||
});
|
||||
@@ -1238,7 +1047,7 @@ void FABilinearFormExtension::DGMult(const Vector &x, Vector &y) const
|
||||
// DG Restriction
|
||||
auto dg_y_ptr = dg_y.Read();
|
||||
auto y_ptr = y.ReadWrite();
|
||||
mfem::forall(local_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i,local_size,
|
||||
{
|
||||
y_ptr[i] += dg_y_ptr[i];
|
||||
});
|
||||
@@ -1282,13 +1091,13 @@ void FABilinearFormExtension::DGMultTranspose(const Vector &x, Vector &y) const
|
||||
const int local_size = a->FESpace()->GetVSize();
|
||||
auto dg_x_ptr = dg_x.Write();
|
||||
auto x_ptr = x.Read();
|
||||
mfem::forall(local_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i,local_size,
|
||||
{
|
||||
dg_x_ptr[i] = x_ptr[i];
|
||||
});
|
||||
const int shared_size = shared_x.Size();
|
||||
auto shared_x_ptr = shared_x.Read();
|
||||
mfem::forall(shared_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i,shared_size,
|
||||
{
|
||||
dg_x_ptr[local_size+i] = shared_x_ptr[i];
|
||||
});
|
||||
@@ -1299,7 +1108,7 @@ void FABilinearFormExtension::DGMultTranspose(const Vector &x, Vector &y) const
|
||||
// DG Restriction
|
||||
auto dg_y_ptr = dg_y.Read();
|
||||
auto y_ptr = y.ReadWrite();
|
||||
mfem::forall(local_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i,local_size,
|
||||
{
|
||||
y_ptr[i] += dg_y_ptr[i];
|
||||
});
|
||||
@@ -1637,7 +1446,7 @@ void PADiscreteLinearOperatorExtension::Assemble()
|
||||
}
|
||||
|
||||
auto tm = test_multiplicity.ReadWrite();
|
||||
mfem::forall(test_multiplicity.Size(), [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i, test_multiplicity.Size(),
|
||||
{
|
||||
tm[i] = 1.0 / tm[i];
|
||||
});
|
||||
@@ -1689,7 +1498,7 @@ void PADiscreteLinearOperatorExtension::AddMultTranspose(
|
||||
MFEM_VERIFY(x.Size() == test_multiplicity.Size(), "Input vector of wrong size");
|
||||
auto xs = xscaled.ReadWrite();
|
||||
auto tm = test_multiplicity.Read();
|
||||
mfem::forall(x.Size(), [=] MFEM_HOST_DEVICE (int i)
|
||||
MFEM_FORALL(i, x.Size(),
|
||||
{
|
||||
xs[i] *= tm[i];
|
||||
});
|
||||
|
||||
@@ -68,9 +68,6 @@ class PABilinearFormExtension : public BilinearFormExtension
|
||||
{
|
||||
protected:
|
||||
const FiniteElementSpace *trial_fes, *test_fes; // Not owned
|
||||
/// Attributes of all mesh elements.
|
||||
Array<int> elem_attributes, bdr_attributes;
|
||||
mutable Vector tmp_evec; // Work array
|
||||
mutable Vector localX, localY;
|
||||
mutable Vector int_face_X, int_face_Y;
|
||||
mutable Vector bdr_face_X, bdr_face_Y;
|
||||
@@ -94,25 +91,6 @@ public:
|
||||
|
||||
protected:
|
||||
void SetupRestrictionOperators(const L2FaceValues m);
|
||||
|
||||
/// @brief Accumulate the action (or transpose) of the integrator on @a x
|
||||
/// into @a y, taking into account the (possibly null) @a markers array.
|
||||
///
|
||||
/// If @a markers is non-null, then only those elements or boundary elements
|
||||
/// whose attribute is marked in the markers array will be added to @a y.
|
||||
///
|
||||
/// @param integ The integrator (domain, boundary, or boundary face).
|
||||
/// @param x Input E-vector.
|
||||
/// @param markers Marked attributes (possibly null, meaning all attributes).
|
||||
/// @param attributes Array of element or boundary element attributes.
|
||||
/// @param transpose Compute the action or transpose of the integrator .
|
||||
/// @param y Output E-vector
|
||||
void AddMultWithMarkers(const BilinearFormIntegrator &integ,
|
||||
const Vector &x,
|
||||
const Array<int> *markers,
|
||||
const Array<int> &attributes,
|
||||
const bool transpose,
|
||||
Vector &y) const;
|
||||
};
|
||||
|
||||
/// Data and methods for element-assembled bilinear forms
|
||||
|
||||
+50
-313
@@ -22,53 +22,41 @@ namespace mfem
|
||||
|
||||
void BilinearFormIntegrator::AssemblePA(const FiniteElementSpace&)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssemblePA(fes)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleNURBSPA(const FiniteElementSpace&)
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::AssembleNURBSPA(fes)\n"
|
||||
mfem_error ("BilinearFormIntegrator::AssemblePA(fes)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssemblePA(const FiniteElementSpace&,
|
||||
const FiniteElementSpace&)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssemblePA(fes, fes)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssemblePABoundary(const FiniteElementSpace&)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssemblePABoundary(fes)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssemblePA(fes, fes)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssemblePAInteriorFaces(const FiniteElementSpace&)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssemblePAInteriorFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssemblePAInteriorFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssemblePABoundaryFaces(const FiniteElementSpace&)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssemblePABoundaryFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssemblePABoundaryFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleDiagonalPA(Vector &)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleDiagonalPA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssembleDiagonalPA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleEA(const FiniteElementSpace &fes,
|
||||
Vector &emat,
|
||||
const bool add)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleEA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssembleEA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace
|
||||
@@ -77,8 +65,8 @@ void BilinearFormIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace
|
||||
Vector &ea_data_ext,
|
||||
const bool add)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleEAInteriorFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssembleEAInteriorFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace
|
||||
@@ -86,8 +74,8 @@ void BilinearFormIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace
|
||||
Vector &ea_data_bdr,
|
||||
const bool add)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleEABoundaryFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssembleEABoundaryFaces(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleDiagonalPA_ADAt(const Vector &, Vector &)
|
||||
@@ -98,75 +86,62 @@ void BilinearFormIntegrator::AssembleDiagonalPA_ADAt(const Vector &, Vector &)
|
||||
|
||||
void BilinearFormIntegrator::AddMultPA(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator:AddMultPA:(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddMultNURBSPA(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AddMultNURBSPA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::MultAssembled(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddMultTransposePA(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AddMultTransposePA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AddMultTransposePA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssembleMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddMultMF(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AddMultMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AddMultMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddMultTransposeMF(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AddMultTransposeMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AddMultTransposeMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleDiagonalMF(Vector &)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleDiagonalMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleElementMatrix(
|
||||
const FiniteElement &el, ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleElementMatrix(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleElementMatrix2(
|
||||
const FiniteElement &el1, const FiniteElement &el2,
|
||||
ElementTransformation &Trans, DenseMatrix &elmat)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleElementMatrix2(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssemblePatchMatrix(
|
||||
const int patch, const FiniteElementSpace &fes, SparseMatrix*& smat)
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::AssemblePatchMatrix(...)\n"
|
||||
mfem_error ("BilinearFormIntegrator::AssembleDiagonalMF(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleFaceMatrix(
|
||||
void BilinearFormIntegrator::AssembleElementMatrix (
|
||||
const FiniteElement &el, ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::AssembleElementMatrix(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleElementMatrix2 (
|
||||
const FiniteElement &el1, const FiniteElement &el2,
|
||||
ElementTransformation &Trans, DenseMatrix &elmat )
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::AssembleElementMatrix2(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleFaceMatrix (
|
||||
const FiniteElement &el1, const FiniteElement &el2,
|
||||
FaceElementTransformations &Trans, DenseMatrix &elmat)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleFaceMatrix(...)\n"
|
||||
" is not implemented for this class.");
|
||||
mfem_error ("BilinearFormIntegrator::AssembleFaceMatrix(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleFaceMatrix(
|
||||
@@ -178,16 +153,6 @@ void BilinearFormIntegrator::AssembleFaceMatrix(
|
||||
" Integrator class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleTraceFaceMatrix (int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe1,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
MFEM_ABORT("AssembleTraceFaceMatrix (DPG form) is not implemented for this"
|
||||
" Integrator class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleElementVector(
|
||||
const FiniteElement &el, ElementTransformation &Tr, const Vector &elfun,
|
||||
Vector &elvect)
|
||||
@@ -867,19 +832,6 @@ void DiffusionIntegrator::AssembleElementMatrix
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el);
|
||||
|
||||
const NURBSFiniteElement *NURBSFE =
|
||||
dynamic_cast<const NURBSFiniteElement *>(&el);
|
||||
|
||||
bool deleteRule = false;
|
||||
if (NURBSFE && patchRules)
|
||||
{
|
||||
const int patch = NURBSFE->GetPatch();
|
||||
const int* ijk = NURBSFE->GetIJK();
|
||||
Array<const KnotVector*>& kv = NURBSFE->KnotVectors();
|
||||
ir = &patchRules->GetElementRule(NURBSFE->GetElement(), patch, ijk, kv,
|
||||
deleteRule);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
@@ -914,11 +866,6 @@ void DiffusionIntegrator::AssembleElementMatrix
|
||||
AddMult_a_AAt(w, dshapedxt, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
if (deleteRule)
|
||||
{
|
||||
delete ir;
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AssembleElementMatrix2(
|
||||
@@ -2456,7 +2403,7 @@ void VectorFEMassIntegrator::AssembleElementMatrix(
|
||||
{
|
||||
int dof = el.GetDof();
|
||||
int spaceDim = Trans.GetSpaceDim();
|
||||
int vdim = std::max(spaceDim, el.GetRangeDim());
|
||||
int vdim = std::max(spaceDim, el.GetVDim());
|
||||
|
||||
double w;
|
||||
|
||||
@@ -2524,7 +2471,7 @@ void VectorFEMassIntegrator::AssembleElementMatrix2(
|
||||
{
|
||||
// assume test_fe is scalar FE and trial_fe is vector FE
|
||||
int spaceDim = Trans.GetSpaceDim();
|
||||
int vdim = std::max(spaceDim, trial_fe.GetRangeDim());
|
||||
int vdim = std::max(spaceDim, trial_fe.GetVDim());
|
||||
int trial_dof = trial_fe.GetDof();
|
||||
int test_dof = test_fe.GetDof();
|
||||
double w;
|
||||
@@ -2622,8 +2569,8 @@ void VectorFEMassIntegrator::AssembleElementMatrix2(
|
||||
{
|
||||
// assume both test_fe and trial_fe are vector FE
|
||||
int spaceDim = Trans.GetSpaceDim();
|
||||
int trial_vdim = std::max(spaceDim, trial_fe.GetRangeDim());
|
||||
int test_vdim = std::max(spaceDim, test_fe.GetRangeDim());
|
||||
int trial_vdim = std::max(spaceDim, trial_fe.GetVDim());
|
||||
int test_vdim = std::max(spaceDim, test_fe.GetVDim());
|
||||
int trial_dof = trial_fe.GetDof();
|
||||
int test_dof = test_fe.GetDof();
|
||||
double w;
|
||||
@@ -2686,7 +2633,7 @@ void VectorFEMassIntegrator::AssembleElementMatrix2(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("VectorFEMassIntegrator::AssembleElementMatrix2(...)\n"
|
||||
mfem_error("VectorFEMassIntegrator::AssembleElementMatrix2(...)\n"
|
||||
" is not implemented for given trial and test bases.");
|
||||
}
|
||||
}
|
||||
@@ -4050,216 +3997,6 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
|
||||
}
|
||||
}
|
||||
|
||||
void TraceIntegrator::AssembleTraceFaceMatrix(int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations & Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
MFEM_VERIFY(test_fe.GetMapType() == FiniteElement::VALUE,
|
||||
"TraceIntegrator::AssembleTraceFaceMatrix: Test space should be H1");
|
||||
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::INTEGRAL,
|
||||
"TraceIntegrator::AssembleTraceFaceMatrix: Trial space should be RT trace");
|
||||
|
||||
int i, j, face_ndof, ndof;
|
||||
int order;
|
||||
|
||||
face_ndof = trial_face_fe.GetDof();
|
||||
ndof = test_fe.GetDof();
|
||||
|
||||
face_shape.SetSize(face_ndof);
|
||||
shape.SetSize(ndof);
|
||||
|
||||
elmat.SetSize(ndof, face_ndof);
|
||||
elmat = 0.0;
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
order = test_fe.GetOrder();
|
||||
order += trial_face_fe.GetOrder();
|
||||
ir = &IntRules.Get(Trans.GetGeometryType(), order);
|
||||
}
|
||||
|
||||
int iel = Trans.Elem1->ElementNo;
|
||||
if (iel != elem)
|
||||
{
|
||||
MFEM_VERIFY(elem == Trans.Elem2->ElementNo, "Elem != Trans.Elem2->ElementNo");
|
||||
}
|
||||
|
||||
double scale = 1.0;
|
||||
if (iel != elem) { scale = -1.; }
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
|
||||
// Set the integration point in the face and the neighboring elements
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
// Trace finite element shape function
|
||||
trial_face_fe.CalcPhysShape(Trans,face_shape);
|
||||
|
||||
// Finite element shape function
|
||||
ElementTransformation * eltrans = (iel == elem) ? Trans.Elem1 : Trans.Elem2;
|
||||
test_fe.CalcPhysShape(*eltrans, shape);
|
||||
|
||||
face_shape *= Trans.Weight()*ip.weight*scale;
|
||||
for (i = 0; i < ndof; i++)
|
||||
{
|
||||
for (j = 0; j < face_ndof; j++)
|
||||
{
|
||||
elmat(i, j) += shape(i) * face_shape(j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NormalTraceIntegrator::AssembleTraceFaceMatrix(int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
int i, j, face_ndof, ndof, dim;
|
||||
int order;
|
||||
|
||||
MFEM_VERIFY(test_fe.GetMapType() == FiniteElement::H_DIV,
|
||||
"NormalTraceIntegrator::AssembleTraceFaceMatrix: Test space should be RT");
|
||||
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::VALUE,
|
||||
"NormalTraceIntegrator::AssembleTraceFaceMatrix: Trial space should be H1 (trace)");
|
||||
|
||||
face_ndof = trial_face_fe.GetDof();
|
||||
ndof = test_fe.GetDof();
|
||||
dim = test_fe.GetDim();
|
||||
|
||||
face_shape.SetSize(face_ndof);
|
||||
normal.SetSize(dim);
|
||||
shape.SetSize(ndof,dim);
|
||||
shape_n.SetSize(ndof);
|
||||
|
||||
elmat.SetSize(ndof, face_ndof);
|
||||
elmat = 0.0;
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
order = test_fe.GetOrder();
|
||||
order += trial_face_fe.GetOrder();
|
||||
ir = &IntRules.Get(Trans.GetGeometryType(), order);
|
||||
}
|
||||
|
||||
int iel = Trans.Elem1->ElementNo;
|
||||
if (iel != elem)
|
||||
{
|
||||
MFEM_VERIFY(elem == Trans.Elem2->ElementNo, "Elem != Trans.Elem2->ElementNo");
|
||||
}
|
||||
|
||||
double scale = 1.0;
|
||||
if (iel != elem) { scale = -1.; }
|
||||
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
trial_face_fe.CalcPhysShape(Trans, face_shape);
|
||||
CalcOrtho(Trans.Jacobian(),normal);
|
||||
ElementTransformation * etrans = (iel == elem) ? Trans.Elem1 : Trans.Elem2;
|
||||
test_fe.CalcVShape(*etrans, shape);
|
||||
shape.Mult(normal, shape_n);
|
||||
face_shape *= ip.weight*scale;
|
||||
|
||||
for (i = 0; i < ndof; i++)
|
||||
{
|
||||
for (j = 0; j < face_ndof; j++)
|
||||
{
|
||||
elmat(i, j) += shape_n(i) * face_shape(j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void TangentTraceIntegrator::AssembleTraceFaceMatrix(int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations & Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
|
||||
MFEM_VERIFY(test_fe.GetMapType() == FiniteElement::H_CURL,
|
||||
"TangentTraceIntegrator::AssembleTraceFaceMatrix: Test space should be ND");
|
||||
|
||||
int face_ndof, ndof, dim;
|
||||
int order;
|
||||
dim = test_fe.GetDim();
|
||||
if (dim == 3)
|
||||
{
|
||||
std::string msg =
|
||||
"Trial space should be ND face trace and test space should be a ND vector field in 3D ";
|
||||
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::H_CURL &&
|
||||
trial_face_fe.GetDim() == 2 && test_fe.GetDim() == 3, msg);
|
||||
}
|
||||
else
|
||||
{
|
||||
std::string msg =
|
||||
"Trial space should be H1 edge trace and test space should be a ND vector field in 2D";
|
||||
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::VALUE &&
|
||||
trial_face_fe.GetDim() == 1 && test_fe.GetDim() == 2, msg);
|
||||
}
|
||||
face_ndof = trial_face_fe.GetDof();
|
||||
ndof = test_fe.GetDof();
|
||||
|
||||
int dimc = (dim == 3) ? 3 : 1;
|
||||
|
||||
face_shape.SetSize(face_ndof,dimc);
|
||||
shape_n.SetSize(ndof,dimc);
|
||||
shape.SetSize(ndof,dim);
|
||||
normal.SetSize(dim);
|
||||
DenseMatrix face_shape_n(face_ndof,dimc);
|
||||
|
||||
elmat.SetSize(ndof, face_ndof);
|
||||
elmat = 0.0;
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
order = test_fe.GetOrder();
|
||||
order += trial_face_fe.GetOrder();
|
||||
ir = &IntRules.Get(Trans.GetGeometryType(), order);
|
||||
}
|
||||
|
||||
int iel = Trans.Elem1->ElementNo;
|
||||
if (iel != elem)
|
||||
{
|
||||
MFEM_VERIFY(elem == Trans.Elem2->ElementNo, "Elem != Trans.Elem2->ElementNo");
|
||||
}
|
||||
|
||||
double scale = 1.0;
|
||||
if (iel != elem) { scale = -1.; }
|
||||
for (int p = 0; p < ir->GetNPoints(); p++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(p);
|
||||
// Set the integration point in the face and the neighboring elements
|
||||
Trans.SetAllIntPoints(&ip);
|
||||
// Trace finite element shape function
|
||||
if (dim == 3)
|
||||
{
|
||||
trial_face_fe.CalcVShape(Trans,face_shape);
|
||||
}
|
||||
else
|
||||
{
|
||||
face_shape.GetColumnReference(0,temp);
|
||||
trial_face_fe.CalcPhysShape(Trans,temp);
|
||||
}
|
||||
CalcOrtho(Trans.Jacobian(),normal);
|
||||
ElementTransformation * eltrans = (iel == elem) ? Trans.Elem1 : Trans.Elem2;
|
||||
test_fe.CalcVShape(*eltrans, shape);
|
||||
|
||||
// rotate
|
||||
cross_product(normal, shape, shape_n);
|
||||
|
||||
const double w = scale*ip.weight;
|
||||
AddMult_a_ABt(w,shape_n, face_shape, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
void NormalInterpolator::AssembleElementMatrix2(
|
||||
const FiniteElement &dom_fe, const FiniteElement &ran_fe,
|
||||
|
||||
+38
-200
@@ -20,6 +20,17 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Local maximum size of dofs and quads in 1D
|
||||
constexpr int HCURL_MAX_D1D = 5;
|
||||
#ifdef MFEM_USE_HIP
|
||||
constexpr int HCURL_MAX_Q1D = 5;
|
||||
#else
|
||||
constexpr int HCURL_MAX_Q1D = 6;
|
||||
#endif
|
||||
|
||||
constexpr int HDIV_MAX_D1D = 5;
|
||||
constexpr int HDIV_MAX_Q1D = 6;
|
||||
|
||||
/// Abstract base class BilinearFormIntegrator
|
||||
class BilinearFormIntegrator : public NonlinearFormIntegrator
|
||||
{
|
||||
@@ -50,13 +61,6 @@ public:
|
||||
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes);
|
||||
|
||||
/// Method defining partial assembly on NURBS patches.
|
||||
/** The result of the partial assembly is stored internally so that it can be
|
||||
used later in the method AddMultNURBSPA(). */
|
||||
virtual void AssembleNURBSPA(const FiniteElementSpace &fes);
|
||||
|
||||
virtual void AssemblePABoundary(const FiniteElementSpace &fes);
|
||||
|
||||
virtual void AssemblePAInteriorFaces(const FiniteElementSpace &fes);
|
||||
|
||||
virtual void AssemblePABoundaryFaces(const FiniteElementSpace &fes);
|
||||
@@ -76,9 +80,6 @@ public:
|
||||
called. */
|
||||
virtual void AddMultPA(const Vector &x, Vector &y) const;
|
||||
|
||||
/// Method for partially assembled action on NURBS patches.
|
||||
virtual void AddMultNURBSPA(const Vector&x, Vector&y) const;
|
||||
|
||||
/// Method for partially assembled transposed action.
|
||||
/** Perform the transpose action of integrator on the input @a x and add the
|
||||
result to the output @a y. Both @a x and @a y are E-vectors, i.e. they
|
||||
@@ -145,13 +146,6 @@ public:
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
/** Given a particular NURBS patch, computes the patch matrix as a
|
||||
SparseMatrix @a smat.
|
||||
*/
|
||||
virtual void AssemblePatchMatrix(const int patch,
|
||||
const FiniteElementSpace &fes,
|
||||
SparseMatrix*& smat);
|
||||
|
||||
virtual void AssembleFaceMatrix(const FiniteElement &el1,
|
||||
const FiniteElement &el2,
|
||||
FaceElementTransformations &Trans,
|
||||
@@ -165,15 +159,6 @@ public:
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
/** Abstract method used for assembling TraceFaceIntegrators for
|
||||
DPG weak formulations. */
|
||||
virtual void AssembleTraceFaceMatrix(int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
|
||||
/// @brief Perform the local action of the BilinearFormIntegrator.
|
||||
/// Note that the default implementation in the base class is general but not
|
||||
/// efficient.
|
||||
@@ -307,12 +292,6 @@ public:
|
||||
bfi->AssemblePA(fes);
|
||||
}
|
||||
|
||||
virtual void AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes)
|
||||
{
|
||||
bfi->AssemblePA(test_fes, trial_fes); // Reverse test and trial
|
||||
}
|
||||
|
||||
virtual void AssemblePAInteriorFaces(const FiniteElementSpace &fes)
|
||||
{
|
||||
bfi->AssemblePAInteriorFaces(fes);
|
||||
@@ -580,7 +559,7 @@ protected:
|
||||
|
||||
|
||||
inline virtual int GetTestVDim(const FiniteElement & test_fe)
|
||||
{ return std::max(space_dim, test_fe.GetRangeDim()); }
|
||||
{ return std::max(space_dim, test_fe.GetVDim()); }
|
||||
|
||||
inline virtual void CalcTestShape(const FiniteElement & test_fe,
|
||||
ElementTransformation &Trans,
|
||||
@@ -588,7 +567,7 @@ protected:
|
||||
{ test_fe.CalcVShape(Trans, shape); }
|
||||
|
||||
inline virtual int GetTrialVDim(const FiniteElement & trial_fe)
|
||||
{ return std::max(space_dim, trial_fe.GetRangeDim()); }
|
||||
{ return std::max(space_dim, trial_fe.GetVDim()); }
|
||||
|
||||
inline virtual void CalcTrialShape(const FiniteElement & trial_fe,
|
||||
ElementTransformation &Trans,
|
||||
@@ -678,7 +657,7 @@ protected:
|
||||
|
||||
|
||||
inline virtual int GetVDim(const FiniteElement & vector_fe)
|
||||
{ return std::max(space_dim, vector_fe.GetRangeDim()); }
|
||||
{ return std::max(space_dim, vector_fe.GetVDim()); }
|
||||
|
||||
inline virtual void CalcVShape(const FiniteElement & vector_fe,
|
||||
ElementTransformation &Trans,
|
||||
@@ -1105,7 +1084,7 @@ public:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetRangeDim() == 3 &&
|
||||
return (trial_fe.GetVDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::SCALAR &&
|
||||
test_fe.GetDerivType() == mfem::FiniteElement::GRAD );
|
||||
@@ -1288,8 +1267,8 @@ public:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetCurlDim() == 3 && trial_fe.GetRangeDim() == 3 &&
|
||||
test_fe.GetCurlDim() == 3 && test_fe.GetRangeDim() == 3 &&
|
||||
return (trial_fe.GetCurlDim() == 3 && trial_fe.GetVDim() == 3 &&
|
||||
test_fe.GetCurlDim() == 3 && test_fe.GetVDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
@@ -1419,7 +1398,7 @@ public:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetRangeDim() == 3 && test_fe.GetCurlDim() == 3 &&
|
||||
return (trial_fe.GetVDim() == 3 && test_fe.GetCurlDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
test_fe.GetDerivType() == mfem::FiniteElement::CURL );
|
||||
@@ -1489,7 +1468,7 @@ public:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (test_fe.GetRangeDim() == 3 &&
|
||||
return (test_fe.GetVDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::SCALAR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
@@ -1529,7 +1508,7 @@ public:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetCurlDim() == 3 && test_fe.GetRangeDim() == 3 &&
|
||||
return (trial_fe.GetCurlDim() == 3 && test_fe.GetVDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
@@ -1900,7 +1879,7 @@ protected:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetCurlDim() == 3 && test_fe.GetRangeDim() == 3 &&
|
||||
return (trial_fe.GetCurlDim() == 3 && test_fe.GetVDim() == 3 &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
}
|
||||
@@ -1959,7 +1938,7 @@ protected:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetRangeDim() == 3 && test_fe.GetCurlDim() == 3 &&
|
||||
return (trial_fe.GetVDim() == 3 && test_fe.GetCurlDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
test_fe.GetDerivType() == mfem::FiniteElement::CURL );
|
||||
}
|
||||
@@ -2115,59 +2094,6 @@ private:
|
||||
Vector pa_data;
|
||||
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
|
||||
|
||||
// Data for NURBS patch PA
|
||||
|
||||
// Type for a variable-row-length 2D array, used for data related to 1D
|
||||
// quadrature rules in each dimension.
|
||||
typedef std::vector<std::vector<int>> IntArrayVar2D;
|
||||
|
||||
int numPatches = 0;
|
||||
static constexpr int numTypes = 2; // Number of rule types
|
||||
|
||||
// In the case integrationMode == Mode::PATCHWISE_REDUCED, an approximate
|
||||
// integration rule with sparse nonzero weights is computed by NNLSSolver,
|
||||
// for each 1D basis function on each patch, in each spatial dimension. For a
|
||||
// fixed 1D basis function b_i with DOF index i, in the tensor product basis
|
||||
// of patch p, the prescribed exact 1D rule is of the form
|
||||
// \sum_k a_{i,j,k} w_k for some integration points indexed by k, with
|
||||
// weights w_k and coefficients a_{i,j,k} depending on Q(x), an element
|
||||
// transformation, b_i, and b_j, for all 1D basis functions b_j whose support
|
||||
// overlaps that of b_i. Define the constraint matrix G = [g_{j,k}] with
|
||||
// g_{j,k} = a_{i,j,k} and the vector of exact weights w = [w_k]. A reduced
|
||||
// rule should have different weights w_r, many of them zero, and should
|
||||
// approximately satisfy Gw_r = Gw. A sparse approximate solution to this
|
||||
// underdetermined system is computed by NNLSSolver, and its data is stored
|
||||
// in the following members.
|
||||
|
||||
// For each patch p, spatial dimension d (total dim), and rule type t (total
|
||||
// numTypes), an std::vector<Vector> of reduced quadrature weights for all
|
||||
// basis functions is stored in reducedWeights[t + numTypes * (d + dim * p)],
|
||||
// reshaped as rw(t,d,p). Note that nd may vary with respect to the patch and
|
||||
// spatial dimension. Array reducedIDs is treated similarly.
|
||||
std::vector<std::vector<Vector>> reducedWeights;
|
||||
std::vector<IntArrayVar2D> reducedIDs;
|
||||
std::vector<Array<int>> pQ1D, pD1D;
|
||||
std::vector<std::vector<Array2D<double>>> pB, pG;
|
||||
std::vector<IntArrayVar2D> pminD, pmaxD, pminQ, pmaxQ, pminDD, pmaxDD;
|
||||
|
||||
std::vector<Array<const IntegrationRule*>> pir1d;
|
||||
|
||||
void SetupPatchPA(const int patch, Mesh *mesh, bool unitWeights=false);
|
||||
|
||||
void SetupPatchBasisData(Mesh *mesh, unsigned int patch);
|
||||
|
||||
/** Called by AssemblePatchMatrix for sparse matrix assembly on a NURBS patch
|
||||
with full 1D quadrature rules. */
|
||||
void AssemblePatchMatrix_fullQuadrature(const int patch,
|
||||
const FiniteElementSpace &fes,
|
||||
SparseMatrix*& smat);
|
||||
|
||||
/** Called by AssemblePatchMatrix for sparse matrix assembly on a NURBS patch
|
||||
with reduced 1D quadrature rules. */
|
||||
void AssemblePatchMatrix_reducedQuadrature(const int patch,
|
||||
const FiniteElementSpace &fes,
|
||||
SparseMatrix*& smat);
|
||||
|
||||
public:
|
||||
/// Construct a diffusion integrator with coefficient Q = 1
|
||||
DiffusionIntegrator(const IntegrationRule *ir = nullptr)
|
||||
@@ -2203,14 +2129,6 @@ public:
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
virtual void AssemblePatchMatrix(const int patch,
|
||||
const FiniteElementSpace &fes,
|
||||
SparseMatrix*& smat);
|
||||
|
||||
virtual void AssembleNURBSPA(const FiniteElementSpace &fes);
|
||||
|
||||
void AssemblePatchPA(const int patch, const FiniteElementSpace &fes);
|
||||
|
||||
/// Perform the local action of the BilinearFormIntegrator
|
||||
virtual void AssembleElementVector(const FiniteElement &el,
|
||||
ElementTransformation &Tr,
|
||||
@@ -2245,10 +2163,6 @@ public:
|
||||
|
||||
virtual void AddMultTransposePA(const Vector&, Vector&) const;
|
||||
|
||||
virtual void AddMultNURBSPA(const Vector&, Vector&) const;
|
||||
|
||||
void AddMultPatchPA(const int patch, const Vector &x, Vector &y) const;
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe);
|
||||
|
||||
@@ -2269,9 +2183,8 @@ protected:
|
||||
// PA extension
|
||||
const FiniteElementSpace *fespace;
|
||||
Vector pa_data;
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
const FaceGeometricFactors *face_geom; ///< Not owned
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, nq, dofs1D, quad1D;
|
||||
|
||||
public:
|
||||
@@ -2298,8 +2211,6 @@ public:
|
||||
|
||||
virtual void AssemblePA(const FiniteElementSpace &fes);
|
||||
|
||||
virtual void AssemblePABoundary(const FiniteElementSpace &fes);
|
||||
|
||||
virtual void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
|
||||
const bool add);
|
||||
|
||||
@@ -3390,87 +3301,6 @@ public:
|
||||
DenseMatrix &elmat);
|
||||
};
|
||||
|
||||
/** Integrator for the DPG form: < v, w > over a face (the interface) where
|
||||
the trial variable v is defined on the interface
|
||||
(H^-1/2 i.e., v:=u⋅n normal trace of H(div))
|
||||
and the test variable w is in an H1-conforming space. */
|
||||
class TraceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
Vector face_shape, shape;
|
||||
public:
|
||||
TraceIntegrator() { }
|
||||
void AssembleTraceFaceMatrix(int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
};
|
||||
|
||||
/** Integrator for the form: < v, w.n > over a face (the interface) where
|
||||
the trial variable v is defined on the interface (H^1/2, i.e., trace of H1)
|
||||
and the test variable w is in an H(div)-conforming space. */
|
||||
class NormalTraceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
Vector face_shape, normal, shape_n;
|
||||
DenseMatrix shape;
|
||||
|
||||
public:
|
||||
NormalTraceIntegrator() { }
|
||||
virtual void AssembleTraceFaceMatrix(int ielem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
};
|
||||
|
||||
|
||||
/** Integrator for the form: < v, w × n > over a face (the interface)
|
||||
* In 3D the trial variable v is defined on the interface (H^-1/2(curl), trace of H(curl))
|
||||
* In 2D it's defined on the interface (H^1/2, trace of H1)
|
||||
* The test variable w is in an H(curl)-conforming space. */
|
||||
class TangentTraceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
DenseMatrix face_shape, shape, shape_n;
|
||||
Vector normal;
|
||||
Vector temp;
|
||||
|
||||
void cross_product(const Vector & x, const DenseMatrix & Y, DenseMatrix & Z)
|
||||
{
|
||||
int dim = x.Size();
|
||||
MFEM_VERIFY(Y.Width() == dim, "Size mismatch");
|
||||
int dimc = dim == 3 ? dim : 1;
|
||||
int h = Y.Height();
|
||||
Z.SetSize(h,dimc);
|
||||
if (dim == 3)
|
||||
{
|
||||
for (int i = 0; i<h; i++)
|
||||
{
|
||||
Z(i,0) = x(2) * Y(i,1) - x(1) * Y(i,2);
|
||||
Z(i,1) = x(0) * Y(i,2) - x(2) * Y(i,0);
|
||||
Z(i,2) = x(1) * Y(i,0) - x(0) * Y(i,1);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i<h; i++)
|
||||
{
|
||||
Z(i,0) = x(1) * Y(i,0) - x(0) * Y(i,1);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
public:
|
||||
TangentTraceIntegrator() { }
|
||||
void AssembleTraceFaceMatrix(int elem,
|
||||
const FiniteElement &trial_face_fe,
|
||||
const FiniteElement &test_fe,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
};
|
||||
|
||||
/** Abstract class to serve as a base for local interpolators to be used in the
|
||||
DiscreteLinearOperator class. */
|
||||
class DiscreteInterpolator : public BilinearFormIntegrator { };
|
||||
@@ -3506,7 +3336,7 @@ public:
|
||||
|
||||
private:
|
||||
/// 1D finite element that generates and owns the 1D DofToQuad maps below
|
||||
FiniteElement *dofquad_fe;
|
||||
FiniteElement * dofquad_fe;
|
||||
|
||||
bool B_id; // is the B basis operator (maps_C_C) the identity?
|
||||
const DofToQuad *maps_C_C; // one-d map with Lobatto rows, Lobatto columns
|
||||
@@ -3521,8 +3351,6 @@ private:
|
||||
class IdentityInterpolator : public DiscreteInterpolator
|
||||
{
|
||||
public:
|
||||
IdentityInterpolator(): dofquad_fe(NULL) { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &dom_fe,
|
||||
const FiniteElement &ran_fe,
|
||||
ElementTransformation &Trans,
|
||||
@@ -3537,11 +3365,9 @@ public:
|
||||
virtual void AddMultPA(const Vector &x, Vector &y) const;
|
||||
virtual void AddMultTransposePA(const Vector &x, Vector &y) const;
|
||||
|
||||
virtual ~IdentityInterpolator() { delete dofquad_fe; }
|
||||
|
||||
private:
|
||||
/// 1D finite element that generates and owns the 1D DofToQuad maps below
|
||||
FiniteElement *dofquad_fe;
|
||||
FiniteElement * dofquad_fe;
|
||||
|
||||
const DofToQuad *maps_C_C; // one-d map with Lobatto rows, Lobatto columns
|
||||
const DofToQuad *maps_O_C; // one-d map with Legendre rows, Lobatto columns
|
||||
@@ -3696,5 +3522,17 @@ protected:
|
||||
VectorCoefficient *VQ;
|
||||
};
|
||||
|
||||
|
||||
|
||||
// PA Diffusion Assemble 2D kernel
|
||||
template<const int T_SDIM>
|
||||
void PADiffusionSetup2D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
const Vector &c,
|
||||
Vector &d);
|
||||
|
||||
}
|
||||
#endif
|
||||
|
||||
@@ -9,8 +9,8 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../pfespace.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "pfespace.hpp"
|
||||
#include <algorithm>
|
||||
|
||||
namespace mfem
|
||||
@@ -9,9 +9,9 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -28,17 +28,17 @@ static void EAConvectionAssemble1D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_Gi[MQ1];
|
||||
double r_Bj[MQ1];
|
||||
for (int q = 0; q < Q1D; q++)
|
||||
@@ -80,18 +80,18 @@ static void EAConvectionAssemble2D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, 2, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
double r_G[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
@@ -157,18 +157,18 @@ static void EAConvectionAssemble3D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 3, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, D1D, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
double r_G[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
@@ -9,9 +9,12 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../ceed/integrators/convection/convection.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "ceed/integrators/convection/convection.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -9,15 +9,18 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../qfunction.hpp"
|
||||
#include "../ceed/integrators/convection/convection.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "ceed/integrators/convection/convection.hpp"
|
||||
#include "quadinterpolator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Convection Integrator
|
||||
|
||||
// PA Convection Assemble 2D kernel
|
||||
static void PAConvectionSetup2D(const int NQ,
|
||||
const int NE,
|
||||
@@ -38,7 +41,7 @@ static void PAConvectionSetup2D(const int NQ,
|
||||
Reshape(vel.Read(), DIM,NQ,NE);
|
||||
auto y = Reshape(op.Write(), NQ,DIM,NE);
|
||||
|
||||
mfem::forall(NE*NQ, [=] MFEM_HOST_DEVICE (int q_global)
|
||||
MFEM_FORALL(q_global, NE*NQ,
|
||||
{
|
||||
const int e = q_global / NQ;
|
||||
const int q = q_global % NQ;
|
||||
@@ -75,7 +78,7 @@ static void PAConvectionSetup3D(const int NQ,
|
||||
Reshape(vel.Read(), 3,1,1) :
|
||||
Reshape(vel.Read(), 3,NQ,NE);
|
||||
auto y = Reshape(op.Write(), NQ,3,NE);
|
||||
mfem::forall(NE*NQ, [=] MFEM_HOST_DEVICE (int q_global)
|
||||
MFEM_FORALL(q_global, NE*NQ,
|
||||
{
|
||||
const int e = q_global / NQ;
|
||||
const int q = q_global % NQ;
|
||||
@@ -132,61 +135,6 @@ static void PAConvectionSetup(const int dim,
|
||||
}
|
||||
}
|
||||
|
||||
void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
Device::GetDeviceMemoryType() : pa_mt;
|
||||
// Assumes tensor-product elements
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
const FiniteElement &el = *fes.GetFE(0);
|
||||
ElementTransformation &Trans = *fes.GetElementTransformation(0);
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, Trans);
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPAConvectionIntegrator(*this, fes, Q, alpha);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PAConvectionIntegrator(fes, *ir, Q, alpha);
|
||||
}
|
||||
return;
|
||||
}
|
||||
const int dims = el.GetDim();
|
||||
const int symmDims = dims;
|
||||
nq = ir->GetNPoints();
|
||||
dim = mesh->Dimension();
|
||||
ne = fes.GetNE();
|
||||
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS, mt);
|
||||
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(symmDims * nq * ne, mt);
|
||||
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector vel(*Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
PAConvectionSetup(dim, nq, ne, ir->GetWeights(), geom->J,
|
||||
vel, alpha, pa_data);
|
||||
}
|
||||
|
||||
void ConvectionIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->GetDiagonal(diag);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("AssembleDiagonalPA not yet implemented for"
|
||||
" ConvectionIntegrator.");
|
||||
}
|
||||
}
|
||||
|
||||
// PA Convection Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0> static
|
||||
void PAConvectionApply2D(const int ne,
|
||||
@@ -203,21 +151,21 @@ void PAConvectionApply2D(const int ne,
|
||||
const int NE = ne;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double u[max_D1D][max_D1D];
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
@@ -323,23 +271,23 @@ void SmemPAConvectionApply2D(const int ne,
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
// constexpr int MDQ = (max_Q1D > max_D1D) ? max_Q1D : max_D1D;
|
||||
MFEM_SHARED double u[NBZ][max_D1D][max_D1D];
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
@@ -450,21 +398,21 @@ void PAConvectionApply3D(const int ne,
|
||||
const int NE = ne;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 3, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double u[max_D1D][max_D1D][max_D1D];
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
@@ -631,21 +579,21 @@ void SmemPAConvectionApply3D(const int ne,
|
||||
const int NE = ne;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 3, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int max_DQ = (max_Q1D > max_D1D) ? max_Q1D : max_D1D;
|
||||
MFEM_SHARED double sm0[max_DQ*max_DQ*max_DQ];
|
||||
MFEM_SHARED double sm1[max_DQ*max_DQ*max_DQ];
|
||||
@@ -835,21 +783,21 @@ void PAConvectionApplyT2D(const int ne,
|
||||
const int NE = ne;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto Gt = Reshape(gt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double u[max_D1D][max_D1D];
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
@@ -951,23 +899,23 @@ void SmemPAConvectionApplyT2D(const int ne,
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto Gt = Reshape(gt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
MFEM_SHARED double u[NBZ][max_D1D][max_D1D];
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
@@ -1073,21 +1021,21 @@ void PAConvectionApplyT3D(const int ne,
|
||||
const int NE = ne;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto Gt = Reshape(gt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 3, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double u[max_D1D][max_D1D][max_D1D];
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
@@ -1249,21 +1197,21 @@ void SmemPAConvectionApplyT3D(const int ne,
|
||||
const int NE = ne;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto Gt = Reshape(gt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 3, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int max_DQ = (max_Q1D > max_D1D) ? max_Q1D : max_D1D;
|
||||
MFEM_SHARED double sm0[3*max_DQ*max_DQ*max_DQ];
|
||||
MFEM_SHARED double sm1[3*max_DQ*max_DQ*max_DQ];
|
||||
@@ -1427,6 +1375,48 @@ void SmemPAConvectionApplyT3D(const int ne,
|
||||
});
|
||||
}
|
||||
|
||||
void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
Device::GetDeviceMemoryType() : pa_mt;
|
||||
// Assumes tensor-product elements
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
const FiniteElement &el = *fes.GetFE(0);
|
||||
ElementTransformation &Trans = *fes.GetElementTransformation(0);
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, Trans);
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPAConvectionIntegrator(*this, fes, Q, alpha);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PAConvectionIntegrator(fes, *ir, Q, alpha);
|
||||
}
|
||||
return;
|
||||
}
|
||||
const int dims = el.GetDim();
|
||||
const int symmDims = dims;
|
||||
nq = ir->GetNPoints();
|
||||
dim = mesh->Dimension();
|
||||
ne = fes.GetNE();
|
||||
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS, mt);
|
||||
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(symmDims * nq * ne, mt);
|
||||
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector vel(*Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
PAConvectionSetup(dim, nq, ne, ir->GetWeights(), geom->J,
|
||||
vel, alpha, pa_data);
|
||||
}
|
||||
|
||||
static void PAConvectionApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
@@ -1531,6 +1521,7 @@ static void PAConvectionApplyT(const int dim,
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
// PA Convection Apply kernel
|
||||
void ConvectionIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
@@ -1545,6 +1536,7 @@ void ConvectionIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
// PA Convection Apply transpose kernel
|
||||
void ConvectionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
@@ -1560,4 +1552,17 @@ void ConvectionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
void ConvectionIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->GetDiagonal(diag);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("AssembleDiagonalPA not yet implemented for"
|
||||
" ConvectionIntegrator.");
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -9,9 +9,9 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -26,7 +26,7 @@ static void EADGTraceAssemble1DInt(const int NF,
|
||||
auto D = Reshape(padata.Read(), 2, 2, NF);
|
||||
auto A_int = Reshape(eadata_int.ReadWrite(), 2, NF);
|
||||
auto A_ext = Reshape(eadata_ext.ReadWrite(), 2, NF);
|
||||
mfem::forall(NF, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, NF,
|
||||
{
|
||||
double val_int0, val_int1, val_ext01, val_ext10;
|
||||
val_int0 = D(0, 0, f);
|
||||
@@ -58,7 +58,7 @@ static void EADGTraceAssemble1DBdr(const int NF,
|
||||
{
|
||||
auto D = Reshape(padata.Read(), 2, 2, NF);
|
||||
auto A_bdr = Reshape(eadata_bdr.ReadWrite(), NF);
|
||||
mfem::forall(NF, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, NF,
|
||||
{
|
||||
if (add)
|
||||
{
|
||||
@@ -83,13 +83,13 @@ static void EADGTraceAssemble2DInt(const int NF,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, 2, 2, NF);
|
||||
auto A_int = Reshape(eadata_int.ReadWrite(), D1D, D1D, 2, NF);
|
||||
auto A_ext = Reshape(eadata_ext.ReadWrite(), D1D, D1D, 2, NF);
|
||||
mfem::forall_2D(NF, D1D, D1D, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL_3D(f, NF, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
@@ -138,12 +138,12 @@ static void EADGTraceAssemble2DBdr(const int NF,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, 2, 2, NF);
|
||||
auto A_bdr = Reshape(eadata_bdr.ReadWrite(), D1D, D1D, NF);
|
||||
mfem::forall_2D(NF, D1D, D1D, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL_3D(f, NF, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
@@ -181,18 +181,18 @@ static void EADGTraceAssemble3DInt(const int NF,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, 2, 2, NF);
|
||||
auto A_int = Reshape(eadata_int.ReadWrite(), D1D, D1D, D1D, D1D, 2, NF);
|
||||
auto A_ext = Reshape(eadata_ext.ReadWrite(), D1D, D1D, D1D, D1D, 2, NF);
|
||||
mfem::forall_2D(NF, D1D, D1D, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL_3D(f, NF, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
{
|
||||
@@ -278,17 +278,17 @@ static void EADGTraceAssemble3DBdr(const int NF,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, 2, 2, NF);
|
||||
auto A_bdr = Reshape(eadata_bdr.ReadWrite(), D1D, D1D, D1D, D1D, NF);
|
||||
mfem::forall_2D(NF, D1D, D1D, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL_3D(f, NF, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
{
|
||||
@@ -9,15 +9,16 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../qfunction.hpp"
|
||||
#include "../restriction.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "restriction.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA DG Trace Integrator
|
||||
static void PADGTraceSetup2D(const int Q1D,
|
||||
const int NF,
|
||||
@@ -43,7 +44,7 @@ static void PADGTraceSetup2D(const int Q1D,
|
||||
auto W = w.Read();
|
||||
auto qd = Reshape(op.Write(), Q1D, 2, 2, NF);
|
||||
|
||||
mfem::forall(Q1D*NF, [=] MFEM_HOST_DEVICE (int tid)
|
||||
MFEM_FORALL(tid, Q1D*NF,
|
||||
{
|
||||
const int f = tid / Q1D;
|
||||
const int q = tid % Q1D;
|
||||
@@ -86,7 +87,7 @@ static void PADGTraceSetup3D(const int Q1D,
|
||||
auto W = w.Read();
|
||||
auto qd = Reshape(op.Write(), Q1D, Q1D, 2, 2, NF);
|
||||
|
||||
mfem::forall(Q1D*Q1D*NF, [=] MFEM_HOST_DEVICE (int tid)
|
||||
MFEM_FORALL(tid, Q1D*Q1D*NF,
|
||||
{
|
||||
int f = tid / (Q1D * Q1D);
|
||||
int q2 = (tid / Q1D) % Q1D;
|
||||
@@ -98,7 +99,7 @@ static void PADGTraceSetup3D(const int Q1D,
|
||||
const double v1 = const_v ? V(1,0,0,0) : V(1,q1,q2,f);
|
||||
const double v2 = const_v ? V(2,0,0,0) : V(2,q1,q2,f);
|
||||
const double dot = n(q1,q2,0,f) * v0 + n(q1,q2,1,f) * v1 +
|
||||
n(q1,q2,2,f) * v2;
|
||||
/* */ n(q1,q2,2,f) * v2;
|
||||
const double abs = dot > 0.0 ? dot : -dot;
|
||||
const double w = W[q1+q2*Q1D]*r*d(q1,q2,f);
|
||||
qd(q1,q2,0,0,f) = w*( alpha/2 * dot + beta * abs );
|
||||
@@ -258,22 +259,22 @@ void PADGTraceApply2D(const int NF,
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, 2, 2, NF);
|
||||
auto x = Reshape(x_.Read(), D1D, VDIM, 2, NF);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, VDIM, 2, NF);
|
||||
|
||||
mfem::forall(NF, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, NF,
|
||||
{
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double u0[max_D1D][VDIM];
|
||||
double u1[max_D1D][VDIM];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
@@ -349,22 +350,22 @@ void PADGTraceApply3D(const int NF,
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, 2, NF);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, VDIM, 2, NF);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, VDIM, 2, NF);
|
||||
|
||||
mfem::forall(NF, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, NF,
|
||||
{
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double u0[max_D1D][max_D1D][VDIM];
|
||||
double u1[max_D1D][max_D1D][VDIM];
|
||||
for (int d1 = 0; d1 < D1D; d1++)
|
||||
@@ -494,23 +495,23 @@ void SmemPADGTraceApply3D(const int NF,
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, 2, NF);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, 2, NF);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, 2, NF);
|
||||
|
||||
mfem::forall_2D_batch(NF, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL_2D(f, NF, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
MFEM_SHARED double u0[NBZ][max_D1D][max_D1D];
|
||||
MFEM_SHARED double u1[NBZ][max_D1D][max_D1D];
|
||||
MFEM_FOREACH_THREAD(d1,x,D1D)
|
||||
@@ -659,22 +660,22 @@ void PADGTraceApplyTranspose2D(const int NF,
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, 2, 2, NF);
|
||||
auto x = Reshape(x_.Read(), D1D, VDIM, 2, NF);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, VDIM, 2, NF);
|
||||
|
||||
mfem::forall(NF, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, NF,
|
||||
{
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double u0[max_D1D][VDIM];
|
||||
double u1[max_D1D][VDIM];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
@@ -755,22 +756,22 @@ void PADGTraceApplyTranspose3D(const int NF,
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, 2, NF);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, VDIM, 2, NF);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, VDIM, 2, NF);
|
||||
|
||||
mfem::forall(NF, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, NF,
|
||||
{
|
||||
const int VDIM = 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double u0[max_D1D][max_D1D][VDIM];
|
||||
double u1[max_D1D][max_D1D][VDIM];
|
||||
for (int d1 = 0; d1 < D1D; d1++)
|
||||
@@ -911,23 +912,23 @@ void SmemPADGTraceApplyTranspose3D(const int NF,
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 2, 2, NF);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, 2, NF);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, 2, NF);
|
||||
|
||||
mfem::forall_2D_batch(NF, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL_2D(f, NF, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
MFEM_SHARED double u0[NBZ][max_D1D][max_D1D];
|
||||
MFEM_SHARED double u1[NBZ][max_D1D][max_D1D];
|
||||
MFEM_FOREACH_THREAD(d1,x,D1D)
|
||||
@@ -9,9 +9,9 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -28,16 +28,16 @@ static void EADiffusionAssemble1D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_Gi[MQ1];
|
||||
double r_Gj[MQ1];
|
||||
for (int q = 0; q < Q1D; q++)
|
||||
@@ -79,18 +79,18 @@ static void EADiffusionAssemble2D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, 3, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
double r_G[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
@@ -156,18 +156,18 @@ static void EADiffusionAssemble3D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 6, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, D1D, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
double r_G[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
@@ -9,9 +9,12 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../ceed/integrators/diffusion/diffusion.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "ceed/integrators/diffusion/diffusion.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
File diff suppressed because it is too large
Load Diff
@@ -9,13 +9,17 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Divergence Integrator
|
||||
|
||||
// PA Divergence Assemble 2D kernel
|
||||
static void PADivergenceSetup2D(const int Q1D,
|
||||
const int NE,
|
||||
@@ -29,7 +33,7 @@ static void PADivergenceSetup2D(const int Q1D,
|
||||
auto J = Reshape(j.Read(), NQ, 2, 2, NE);
|
||||
auto y = Reshape(op.Write(), NQ, 2, 2, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
@@ -58,7 +62,7 @@ static void PADivergenceSetup3D(const int Q1D,
|
||||
auto W = w.Read();
|
||||
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
|
||||
auto y = Reshape(op.Write(), NQ, 3, 3, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
@@ -170,24 +174,24 @@ static void PADivergenceApply2D(const int NE,
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, TR_D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, TR_D1D);
|
||||
auto Bt = Reshape(bt.Read(), TE_D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D*Q1D, 2,2, NE);
|
||||
auto x = Reshape(x_.Read(), TR_D1D, TR_D1D, 2, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TE_D1D, TE_D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = 2;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double grad[max_Q1D][max_Q1D][VDIM];
|
||||
double div[max_Q1D][max_Q1D];
|
||||
@@ -308,24 +312,24 @@ static void PADivergenceApplyTranspose2D(const int NE,
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto Bt = Reshape(bt.Read(), TR_D1D, Q1D);
|
||||
auto Gt = Reshape(gt.Read(), TR_D1D, Q1D);
|
||||
auto B = Reshape(b.Read(), Q1D, TE_D1D);
|
||||
auto op = Reshape(op_.Read(), Q1D*Q1D, 2,2, NE);
|
||||
auto x = Reshape(x_.Read(), TE_D1D, TE_D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TR_D1D, TR_D1D, 2, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = 2;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_TR_D1D = T_TR_D1D ? T_TR_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_TR_D1D = T_TR_D1D ? T_TR_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double quadTest[max_Q1D][max_Q1D];
|
||||
double grad[max_Q1D][max_Q1D][VDIM];
|
||||
@@ -424,24 +428,24 @@ static void PADivergenceApply3D(const int NE,
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, TR_D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, TR_D1D);
|
||||
auto Bt = Reshape(bt.Read(), TE_D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D*Q1D*Q1D, 3,3, NE);
|
||||
auto x = Reshape(x_.Read(), TR_D1D, TR_D1D, TR_D1D, 3, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TE_D1D, TE_D1D, TE_D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = 3;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double grad[max_Q1D][max_Q1D][max_Q1D][VDIM];
|
||||
double div[max_Q1D][max_Q1D][max_Q1D];
|
||||
@@ -607,24 +611,24 @@ static void PADivergenceApplyTranspose3D(const int NE,
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto Bt = Reshape(bt.Read(), TR_D1D, Q1D);
|
||||
auto Gt = Reshape(gt.Read(), TR_D1D, Q1D);
|
||||
auto B = Reshape(b.Read(), Q1D, TE_D1D);
|
||||
auto op = Reshape(op_.Read(), Q1D*Q1D*Q1D, 3,3, NE);
|
||||
auto x = Reshape(x_.Read(), TE_D1D, TE_D1D, TE_D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TR_D1D, TR_D1D, TR_D1D, 3, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = 3;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_TR_D1D = T_TR_D1D ? T_TR_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_TR_D1D = T_TR_D1D ? T_TR_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double quadTest[max_Q1D][max_Q1D][max_Q1D];
|
||||
double grad[max_Q1D][max_Q1D][max_Q1D][VDIM];
|
||||
@@ -786,9 +790,9 @@ static void SmemPADivergenceApply3D(const int NE,
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
|
||||
auto b = Reshape(b_.Read(), Q1D, TR_D1D);
|
||||
auto g = Reshape(g_.Read(), Q1D, TR_D1D);
|
||||
@@ -797,16 +801,16 @@ static void SmemPADivergenceApply3D(const int NE,
|
||||
auto x = Reshape(x_.Read(), TR_D1D, TR_D1D, TR_D1D, 3, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TE_D1D, TE_D1D, TE_D1D, NE);
|
||||
|
||||
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
constexpr int VDIM = 3;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1DR = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int D1DE = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1R = T_TR_D1D ? T_TR_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MD1E = T_TE_D1D ? T_TE_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1R = T_TR_D1D ? T_TR_D1D : MAX_D1D;
|
||||
constexpr int MD1E = T_TE_D1D ? T_TE_D1D : MAX_D1D;
|
||||
constexpr int MD1 = MD1E > MD1R ? MD1E : MD1R;
|
||||
constexpr int MDQ = MQ1 > MD1 ? MQ1 : MD1;
|
||||
MFEM_SHARED double sBG[2][MQ1*MD1];
|
||||
@@ -1036,25 +1040,11 @@ static void PADivergenceApply(const int dim,
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
if (transpose)
|
||||
{
|
||||
return PADivergenceApplyTranspose2D(NE,B,G,Bt,op,x,y,TR_D1D,TE_D1D,Q1D);
|
||||
}
|
||||
else
|
||||
{
|
||||
return PADivergenceApply2D(NE,B,G,Bt,op,x,y,TR_D1D,TE_D1D,Q1D);
|
||||
}
|
||||
return PADivergenceApply2D(NE,B,G,Bt,op,x,y,TR_D1D,TE_D1D,Q1D);
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
if (transpose)
|
||||
{
|
||||
return PADivergenceApplyTranspose3D(NE,B,G,Bt,op,x,y,TR_D1D,TE_D1D,Q1D);
|
||||
}
|
||||
else
|
||||
{
|
||||
return PADivergenceApply3D(NE,B,G,Bt,op,x,y,TR_D1D,TE_D1D,Q1D);
|
||||
}
|
||||
return PADivergenceApply3D(NE,B,G,Bt,op,x,y,TR_D1D,TE_D1D,Q1D);
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
@@ -9,14 +9,18 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../qfunction.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Gradient Integrator
|
||||
|
||||
/* Description of the *SetupND functions
|
||||
Inputs are as follows
|
||||
\b Q1D number of quadrature points in one dimension.
|
||||
@@ -58,8 +62,8 @@ namespace mfem
|
||||
The shared memory (Smem) versions of the kernels differ from the regular
|
||||
versions in the following properties.
|
||||
|
||||
\b mfem::forall is using only one level of parallelism.
|
||||
\b mfem::forall_ND uses an additional level of parallelism
|
||||
\b MFEM_FORALL is using only one level of parallelism.
|
||||
\b MFEM_FORALL_ND uses an additional level of parallelism
|
||||
\b MFEM_FOREACH_THREAD
|
||||
|
||||
These macros allow automatic mapping of manually defined blocks to
|
||||
@@ -83,7 +87,7 @@ static void PAGradientSetup2D(const int Q1D,
|
||||
const auto C = const_c ? Reshape(c.Read(), 1,1) :
|
||||
Reshape(c.Read(), NQ, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
@@ -118,7 +122,7 @@ static void PAGradientSetup3D(const int Q1D,
|
||||
const auto C = const_c ? Reshape(c.Read(), 1,1) :
|
||||
Reshape(c.Read(), NQ,NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
@@ -229,24 +233,24 @@ static void PAGradientApply2D(const int NE,
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, TR_D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, TR_D1D);
|
||||
auto Bt = Reshape(bt.Read(), TE_D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D*Q1D, 2,2, NE);
|
||||
auto x = Reshape(x_.Read(), TR_D1D, TR_D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TE_D1D, TE_D1D, 2, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = 2;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double grad[max_Q1D][max_Q1D][VDIM];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
@@ -359,24 +363,24 @@ static void PAGradientApply3D(const int NE,
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, TR_D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, TR_D1D);
|
||||
auto Bt = Reshape(bt.Read(), TE_D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D*Q1D*Q1D, 3,3, NE);
|
||||
auto x = Reshape(x_.Read(), TR_D1D, TR_D1D, TR_D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TE_D1D, TE_D1D, TE_D1D, 3, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = 3;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_TE_D1D = T_TE_D1D ? T_TE_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
|
||||
double grad[max_Q1D][max_Q1D][max_Q1D][VDIM];
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
@@ -555,11 +559,11 @@ static void SmemPAGradientApply3D(const int NE,
|
||||
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
MFEM_VERIFY(TR_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(TR_D1D <= Q1D, "");
|
||||
MFEM_VERIFY(TE_D1D <= Q1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
|
||||
auto b = Reshape(b_.Read(), Q1D, TR_D1D);
|
||||
auto g = Reshape(g_.Read(), Q1D, TR_D1D);
|
||||
@@ -568,16 +572,15 @@ static void SmemPAGradientApply3D(const int NE,
|
||||
auto x = Reshape(x_.Read(), TR_D1D, TR_D1D, TR_D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), TE_D1D, TE_D1D, TE_D1D, 3, NE);
|
||||
|
||||
mfem::forall_3D(NE, (Q1D>8)?8:Q1D, (Q1D>8)?8:Q1D, (Q1D>8)?8:Q1D,
|
||||
[=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, (Q1D>8)?8:Q1D, (Q1D>8)?8:Q1D, (Q1D>8)?8:Q1D,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1DR = T_TR_D1D ? T_TR_D1D : tr_d1d;
|
||||
const int D1DE = T_TE_D1D ? T_TE_D1D : te_d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1R = T_TR_D1D ? T_TR_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MD1E = T_TE_D1D ? T_TE_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1R = T_TR_D1D ? T_TR_D1D : MAX_D1D;
|
||||
constexpr int MD1E = T_TE_D1D ? T_TE_D1D : MAX_D1D;
|
||||
constexpr int MD1 = MD1E > MD1R ? MD1E : MD1R;
|
||||
constexpr int MDQ = MQ1 > MD1 ? MQ1 : MD1;
|
||||
MFEM_SHARED double sBG[2][MQ1*MD1];
|
||||
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
@@ -9,9 +9,9 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -27,16 +27,16 @@ static void EAMassAssemble1D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, NE);
|
||||
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_Bi[MQ1];
|
||||
double r_Bj[MQ1];
|
||||
for (int q = 0; q < Q1D; q++)
|
||||
@@ -77,17 +77,17 @@ static void EAMassAssemble2D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, NE);
|
||||
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
{
|
||||
@@ -149,56 +149,25 @@ static void EAMassAssemble3D(const int NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(basis.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto M = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, D1D, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL_3D(e, NE, D1D, D1D, D1D,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int DQ = T_D1D * T_Q1D;
|
||||
|
||||
// For quadratic and lower it's better to use registers but for higher-order you start to
|
||||
// spill and it's better to use shared memory
|
||||
constexpr bool USE_REG = DQ != 0 && DQ <= 12;
|
||||
constexpr int MD1r = USE_REG ? MD1 : 1;
|
||||
constexpr int MQ1r = USE_REG ? MQ1 : 1;
|
||||
constexpr int MD1s = USE_REG ? 1 : MD1;
|
||||
constexpr int MQ1s = USE_REG ? 1 : MQ1;
|
||||
|
||||
MFEM_SHARED double s_B[MQ1s][MD1s];
|
||||
double r_B[MQ1r][MD1r];
|
||||
double (*l_B)[MD1] = nullptr;
|
||||
if (USE_REG)
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double r_B[MQ1][MD1];
|
||||
for (int d = 0; d < D1D; d++)
|
||||
{
|
||||
for (int d = 0; d < D1D; d++)
|
||||
for (int q = 0; q < Q1D; q++)
|
||||
{
|
||||
for (int q = 0; q < Q1D; q++)
|
||||
{
|
||||
r_B[q][d] = B(q,d);
|
||||
}
|
||||
r_B[q][d] = B(q,d);
|
||||
}
|
||||
l_B = (double (*)[MD1])r_B;
|
||||
}
|
||||
else
|
||||
{
|
||||
if (MFEM_THREAD_ID(z) == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,x,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,y,Q1D)
|
||||
{
|
||||
s_B[q][d] = B(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
l_B = (double (*)[MD1])s_B;
|
||||
}
|
||||
|
||||
MFEM_SHARED double s_D[MQ1][MQ1][MQ1];
|
||||
MFEM_FOREACH_THREAD(k1,x,Q1D)
|
||||
{
|
||||
@@ -230,9 +199,9 @@ static void EAMassAssemble3D(const int NE,
|
||||
{
|
||||
for (int k3 = 0; k3 < Q1D; ++k3)
|
||||
{
|
||||
val += l_B[k1][i1] * l_B[k1][j1]
|
||||
* l_B[k2][i2] * l_B[k2][j2]
|
||||
* l_B[k3][i3] * l_B[k3][j3]
|
||||
val += r_B[k1][i1] * r_B[k1][j1]
|
||||
* r_B[k2][i2] * r_B[k2][j2]
|
||||
* r_B[k3][i3] * r_B[k3][j3]
|
||||
* s_D[k1][k2][k3];
|
||||
}
|
||||
}
|
||||
@@ -9,9 +9,12 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../ceed/integrators/mass/mass.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "ceed/integrators/mass/mass.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -0,0 +1,736 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "ceed/integrators/mass/mass.hpp"
|
||||
#include "bilininteg_mass_pa.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Mass Integrator
|
||||
|
||||
// PA Mass Assemble kernel
|
||||
|
||||
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
Device::GetDeviceMemoryType() : pa_mt;
|
||||
|
||||
// Assuming the same element type
|
||||
fespace = &fes;
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
if (mesh->GetNE() == 0) { return; }
|
||||
const FiniteElement &el = *fes.GetFE(0);
|
||||
ElementTransformation *T0 = mesh->GetElementTransformation(0);
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, *T0);
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPAMassIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
int map_type = el.GetMapType();
|
||||
dim = mesh->Dimension();
|
||||
ne = fes.GetMesh()->GetNE();
|
||||
nq = ir->GetNPoints();
|
||||
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::DETERMINANTS, mt);
|
||||
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(ne*nq, mt);
|
||||
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
if (dim==1) { MFEM_ABORT("Not supported yet... stay tuned!"); }
|
||||
if (dim==2)
|
||||
{
|
||||
const int NE = ne;
|
||||
const int Q1D = quad1D;
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool by_val = map_type == FiniteElement::VALUE;
|
||||
const auto W = Reshape(ir->GetWeights().Read(), Q1D,Q1D);
|
||||
const auto J = Reshape(geom->detJ.Read(), Q1D,Q1D,NE);
|
||||
const auto C = const_c ? Reshape(coeff.Read(), 1,1,1) :
|
||||
Reshape(coeff.Read(), Q1D,Q1D,NE);
|
||||
auto v = Reshape(pa_data.Write(), Q1D,Q1D, NE);
|
||||
MFEM_FORALL_2D(e, NE, Q1D,Q1D,1,
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
const double detJ = J(qx,qy,e);
|
||||
const double coeff = const_c ? C(0,0,0) : C(qx,qy,e);
|
||||
v(qx,qy,e) = W(qx,qy) * coeff * (by_val ? detJ : 1.0/detJ);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
if (dim==3)
|
||||
{
|
||||
const int NE = ne;
|
||||
const int Q1D = quad1D;
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool by_val = map_type == FiniteElement::VALUE;
|
||||
const auto W = Reshape(ir->GetWeights().Read(), Q1D,Q1D,Q1D);
|
||||
const auto J = Reshape(geom->detJ.Read(), Q1D,Q1D,Q1D,NE);
|
||||
const auto C = const_c ? Reshape(coeff.Read(), 1,1,1,1) :
|
||||
Reshape(coeff.Read(), Q1D,Q1D,Q1D,NE);
|
||||
auto v = Reshape(pa_data.Write(), Q1D,Q1D,Q1D,NE);
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
const double detJ = J(qx,qy,qz,e);
|
||||
const double coeff = const_c ? C(0,0,0,0) : C(qx,qy,qz,e);
|
||||
v(qx,qy,qz,e) = W(qx,qy,qz) * coeff * (by_val ? detJ : 1.0/detJ);
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void PAMassAssembleDiagonal2D(const int NE,
|
||||
const Array<double> &b,
|
||||
const Vector &d,
|
||||
Vector &y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d.Read(), Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y.ReadWrite(), D1D, D1D, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double QD[MQ1][MD1];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
QD[qx][dy] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QD[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
Y(dx,dy,e) += B(qx, dx) * B(qx, dx) * QD[qx][dy];
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
static void SmemPAMassAssembleDiagonal2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Vector &d_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= MD1, "");
|
||||
MFEM_VERIFY(Q1D <= MQ1, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_SHARED double B[MQ1][MD1];
|
||||
MFEM_SHARED double QDZ[NBZ][MQ1][MD1];
|
||||
double (*QD)[MD1] = (double (*)[MD1])(QDZ + tidz);
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
QD[qx][dy] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QD[qx][dy] += B[qy][dy] * B[qy][dy] * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
// might need absolute values on next line
|
||||
Y(dx,dy,e) += B[qx][dx] * B[qx][dx] * QD[qx][dy];
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void PAMassAssembleDiagonal3D(const int NE,
|
||||
const Array<double> &b,
|
||||
const Vector &d,
|
||||
Vector &y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double QQD[MQ1][MQ1][MD1];
|
||||
double QDD[MQ1][MD1][MD1];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
QQD[qx][qy][dz] = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD[qx][qy][dz] += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
QDD[qx][dy][dz] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QDD[qx][dy][dz] += B(qy, dy) * B(qy, dy) * QQD[qx][qy][dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
double t = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
t += B(qx, dx) * B(qx, dx) * QDD[qx][dy][dz];
|
||||
}
|
||||
Y(dx, dy, dz, e) += t;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void SmemPAMassAssembleDiagonal3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Vector &d_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= MD1, "");
|
||||
MFEM_VERIFY(Q1D <= MQ1, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
MFEM_SHARED double B[MQ1][MD1];
|
||||
MFEM_SHARED double QQD[MQ1][MQ1][MD1];
|
||||
MFEM_SHARED double QDD[MQ1][MD1][MD1];
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
QQD[qx][qy][dz] = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
QDD[qx][dy][dz] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double t = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
|
||||
}
|
||||
Y(dx, dy, dz, e) += t;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
static void PAMassAssembleDiagonal(const int dim, const int D1D,
|
||||
const int Q1D, const int NE,
|
||||
const Array<double> &B,
|
||||
const Vector &D,
|
||||
Vector &Y)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
|
||||
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
|
||||
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
|
||||
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
|
||||
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
|
||||
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
|
||||
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
|
||||
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
|
||||
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
|
||||
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
|
||||
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
|
||||
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
|
||||
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
|
||||
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
|
||||
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
|
||||
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
|
||||
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
|
||||
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
|
||||
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
|
||||
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->GetDiagonal(diag);
|
||||
}
|
||||
else
|
||||
{
|
||||
PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
// OCCA PA Mass Apply 2D kernel
|
||||
static void OccaPAMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y)
|
||||
{
|
||||
occa::properties props;
|
||||
props["defines/D1D"] = D1D;
|
||||
props["defines/Q1D"] = Q1D;
|
||||
const occa::memory o_B = OccaMemoryRead(B.GetMemory(), B.Size());
|
||||
const occa::memory o_Bt = OccaMemoryRead(Bt.GetMemory(), Bt.Size());
|
||||
const occa::memory o_D = OccaMemoryRead(D.GetMemory(), D.Size());
|
||||
const occa::memory o_X = OccaMemoryRead(X.GetMemory(), X.Size());
|
||||
occa::memory o_Y = OccaMemoryReadWrite(Y.GetMemory(), Y.Size());
|
||||
const occa_id_t id = std::make_pair(D1D,Q1D);
|
||||
if (!Device::Allows(Backend::OCCA_CUDA))
|
||||
{
|
||||
static occa_kernel_t OccaMassApply2D_cpu;
|
||||
if (OccaMassApply2D_cpu.find(id) == OccaMassApply2D_cpu.end())
|
||||
{
|
||||
const occa::kernel MassApply2D_CPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply2D_CPU", props);
|
||||
OccaMassApply2D_cpu.emplace(id, MassApply2D_CPU);
|
||||
}
|
||||
OccaMassApply2D_cpu.at(id)(NE, o_B, o_Bt, o_D, o_X, o_Y);
|
||||
}
|
||||
else
|
||||
{
|
||||
static occa_kernel_t OccaMassApply2D_gpu;
|
||||
if (OccaMassApply2D_gpu.find(id) == OccaMassApply2D_gpu.end())
|
||||
{
|
||||
const occa::kernel MassApply2D_GPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply2D_GPU", props);
|
||||
OccaMassApply2D_gpu.emplace(id, MassApply2D_GPU);
|
||||
}
|
||||
OccaMassApply2D_gpu.at(id)(NE, o_B, o_Bt, o_D, o_X, o_Y);
|
||||
}
|
||||
}
|
||||
|
||||
// OCCA PA Mass Apply 3D kernel
|
||||
static void OccaPAMassApply3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y)
|
||||
{
|
||||
occa::properties props;
|
||||
props["defines/D1D"] = D1D;
|
||||
props["defines/Q1D"] = Q1D;
|
||||
const occa::memory o_B = OccaMemoryRead(B.GetMemory(), B.Size());
|
||||
const occa::memory o_Bt = OccaMemoryRead(Bt.GetMemory(), Bt.Size());
|
||||
const occa::memory o_D = OccaMemoryRead(D.GetMemory(), D.Size());
|
||||
const occa::memory o_X = OccaMemoryRead(X.GetMemory(), X.Size());
|
||||
occa::memory o_Y = OccaMemoryReadWrite(Y.GetMemory(), Y.Size());
|
||||
const occa_id_t id = std::make_pair(D1D,Q1D);
|
||||
if (!Device::Allows(Backend::OCCA_CUDA))
|
||||
{
|
||||
static occa_kernel_t OccaMassApply3D_cpu;
|
||||
if (OccaMassApply3D_cpu.find(id) == OccaMassApply3D_cpu.end())
|
||||
{
|
||||
const occa::kernel MassApply3D_CPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply3D_CPU", props);
|
||||
OccaMassApply3D_cpu.emplace(id, MassApply3D_CPU);
|
||||
}
|
||||
OccaMassApply3D_cpu.at(id)(NE, o_B, o_Bt, o_D, o_X, o_Y);
|
||||
}
|
||||
else
|
||||
{
|
||||
static occa_kernel_t OccaMassApply3D_gpu;
|
||||
if (OccaMassApply3D_gpu.find(id) == OccaMassApply3D_gpu.end())
|
||||
{
|
||||
const occa::kernel MassApply3D_GPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply3D_GPU", props);
|
||||
OccaMassApply3D_gpu.emplace(id, MassApply3D_GPU);
|
||||
}
|
||||
OccaMassApply3D_gpu.at(id)(NE, o_B, o_Bt, o_D, o_X, o_Y);
|
||||
}
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void PAMassApply2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= MAX_D1D, "");
|
||||
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
internal::PAMassApply2D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
static void SmemPAMassApply2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= MD1, "");
|
||||
MFEM_VERIFY(Q1D <= MQ1, "");
|
||||
const auto b = b_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto x = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
|
||||
{
|
||||
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(e, NE, b, D, x, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void PAMassApply3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= MAX_D1D, "");
|
||||
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
internal::PAMassApply3D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void SmemPAMassApply3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int M1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= M1D, "");
|
||||
MFEM_VERIFY(Q1D <= M1Q, "");
|
||||
auto b = b_.Read();
|
||||
auto d = d_.Read();
|
||||
auto x = x_.Read();
|
||||
auto y = y_.ReadWrite();
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
|
||||
{
|
||||
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
static void PAMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y)
|
||||
{
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
return OccaPAMassApply2D(D1D,Q1D,NE,B,Bt,D,X,Y);
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
return OccaPAMassApply3D(D1D,Q1D,NE,B,Bt,D,X,Y);
|
||||
}
|
||||
MFEM_ABORT("OCCA PA Mass Apply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
const int id = (D1D << 4) | Q1D;
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPAMassApply2D<2,2,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x24: return SmemPAMassApply2D<2,4,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x33: return SmemPAMassApply2D<3,3,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x34: return SmemPAMassApply2D<3,4,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x35: return SmemPAMassApply2D<3,5,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x36: return SmemPAMassApply2D<3,6,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x44: return SmemPAMassApply2D<4,4,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x46: return SmemPAMassApply2D<4,6,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x48: return SmemPAMassApply2D<4,8,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x55: return SmemPAMassApply2D<5,5,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x57: return SmemPAMassApply2D<5,7,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x58: return SmemPAMassApply2D<5,8,2>(NE,B,Bt,D,X,Y);
|
||||
case 0x66: return SmemPAMassApply2D<6,6,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x77: return SmemPAMassApply2D<7,7,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x88: return SmemPAMassApply2D<8,8,2>(NE,B,Bt,D,X,Y);
|
||||
case 0x99: return SmemPAMassApply2D<9,9,2>(NE,B,Bt,D,X,Y);
|
||||
default: return PAMassApply2D(NE,B,Bt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
|
||||
case 0x23: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
|
||||
case 0x24: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x26: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x34: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x35: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
|
||||
case 0x36: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x37: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
|
||||
case 0x45: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
|
||||
case 0x46: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x48: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x56: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x58: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x67: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
|
||||
case 0x78: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x89: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
|
||||
case 0x9A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
|
||||
default: return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->AddMult(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
PAMassApply(dim, dofs1D, quad1D, ne, maps->B, maps->Bt, pa_data, x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void MassIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
// Mass integrator is symmetric
|
||||
AddMultPA(x, y);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -9,15 +9,12 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_BILININTEG_MASS_KERNELS_HPP
|
||||
#define MFEM_BILININTEG_MASS_KERNELS_HPP
|
||||
#ifndef MFEM_BILININTEG_MASS_PA_HPP
|
||||
#define MFEM_BILININTEG_MASS_PA_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../config/config.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../linalg/dtensor.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -25,315 +22,6 @@ namespace mfem
|
||||
namespace internal
|
||||
{
|
||||
|
||||
void PAMassAssembleDiagonal(const int dim, const int D1D,
|
||||
const int Q1D, const int NE,
|
||||
const Array<double> &B,
|
||||
const Vector &D,
|
||||
Vector &Y);
|
||||
|
||||
// PA Mass Diagonal 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void PAMassAssembleDiagonal2D(const int NE,
|
||||
const Array<double> &b,
|
||||
const Vector &d,
|
||||
Vector &y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d.Read(), Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
double QD[MQ1][MD1];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
QD[qx][dy] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QD[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
Y(dx,dy,e) += B(qx, dx) * B(qx, dx) * QD[qx][dy];
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Diagonal 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
inline void SmemPAMassAssembleDiagonal2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Vector &d_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
MFEM_VERIFY(Q1D <= max_q1d, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
MFEM_SHARED double B[MQ1][MD1];
|
||||
MFEM_SHARED double QDZ[NBZ][MQ1][MD1];
|
||||
double (*QD)[MD1] = (double (*)[MD1])(QDZ + tidz);
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
QD[qx][dy] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QD[qx][dy] += B[qy][dy] * B[qy][dy] * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
// might need absolute values on next line
|
||||
Y(dx,dy,e) += B[qx][dx] * B[qx][dx] * QD[qx][dy];
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// PA Mass Diagonal 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void PAMassAssembleDiagonal3D(const int NE,
|
||||
const Array<double> &b,
|
||||
const Vector &d,
|
||||
Vector &y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
double QQD[MQ1][MQ1][MD1];
|
||||
double QDD[MQ1][MD1][MD1];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
QQD[qx][qy][dz] = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD[qx][qy][dz] += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
QDD[qx][dy][dz] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QDD[qx][dy][dz] += B(qy, dy) * B(qy, dy) * QQD[qx][qy][dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
double t = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
t += B(qx, dx) * B(qx, dx) * QDD[qx][dy][dz];
|
||||
}
|
||||
Y(dx, dy, dz, e) += t;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Diagonal 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPAMassAssembleDiagonal3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Vector &d_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
MFEM_VERIFY(Q1D <= max_q1d, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
MFEM_SHARED double B[MQ1][MD1];
|
||||
MFEM_SHARED double QQD[MQ1][MQ1][MD1];
|
||||
MFEM_SHARED double QDD[MQ1][MD1][MD1];
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
QQD[qx][qy][dz] = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD[qx][qy][dz] += B[qz][dz] * B[qz][dz] * D(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
QDD[qx][dy][dz] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
QDD[qx][dy][dz] += B[qy][dy] * B[qy][dy] * QQD[qx][qy][dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double t = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
t += B[qx][dx] * B[qx][dx] * QDD[qx][dy][dz];
|
||||
}
|
||||
Y(dx, dy, dz, e) += t;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void PAMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y);
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
// OCCA PA Mass Apply 2D kernel
|
||||
void OccaPAMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y);
|
||||
|
||||
// OCCA PA Mass Apply 3D kernel
|
||||
void OccaPAMassApply3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y);
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
template <bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void PAMassApply2D_Element(const int e,
|
||||
@@ -365,8 +53,8 @@ void PAMassApply2D_Element(const int e,
|
||||
}
|
||||
}
|
||||
|
||||
constexpr int max_D1D = DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = MAX_D1D;
|
||||
constexpr int max_Q1D = MAX_Q1D;
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
@@ -447,8 +135,8 @@ void SmemPAMassApply2D_Element(const int e,
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
auto b = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
@@ -592,8 +280,8 @@ void PAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
|
||||
constexpr int max_D1D = DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = DofQuadLimits::MAX_Q1D;
|
||||
constexpr int max_D1D = MAX_D1D;
|
||||
constexpr int max_Q1D = MAX_Q1D;
|
||||
double sol_xyz[max_Q1D][max_Q1D][max_Q1D];
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
@@ -722,8 +410,8 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
{
|
||||
constexpr int D1D = T_D1D ? T_D1D : d1d;
|
||||
constexpr int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
auto b = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
@@ -937,116 +625,6 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
// PA Mass Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void PAMassApply2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::PAMassApply2D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
inline void SmemPAMassApply2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
MFEM_VERIFY(Q1D <= max_q1d, "");
|
||||
const auto b = b_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto x = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(e, NE, b, D, x, Y, d1d,
|
||||
q1d);
|
||||
});
|
||||
}
|
||||
|
||||
// PA Mass Apply 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void PAMassApply3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::PAMassApply3D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPAMassApply3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
MFEM_VERIFY(Q1D <= max_q1d, "");
|
||||
auto b = b_.Read();
|
||||
auto d = d_.Read();
|
||||
auto x = x_.Read();
|
||||
auto y = y_.ReadWrite();
|
||||
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
@@ -9,8 +9,8 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -27,7 +27,7 @@ void TransposeIntegrator::AssembleEA(const FiniteElementSpace &fes,
|
||||
const int dofs = fes.GetFE(0)->GetDof();
|
||||
auto A = Reshape(ea_data_tmp.Read(), dofs, dofs, ne);
|
||||
auto AT = Reshape(ea_data.ReadWrite(), dofs, dofs, ne);
|
||||
mfem::forall(ne, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, ne,
|
||||
{
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
@@ -46,7 +46,7 @@ void TransposeIntegrator::AssembleEA(const FiniteElementSpace &fes,
|
||||
if (ne == 0) { return; }
|
||||
const int dofs = fes.GetFE(0)->GetDof();
|
||||
auto A = Reshape(ea_data.ReadWrite(), dofs, dofs, ne);
|
||||
mfem::forall(ne, [=] MFEM_HOST_DEVICE (int e)
|
||||
MFEM_FORALL(e, ne,
|
||||
{
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
@@ -80,7 +80,7 @@ void TransposeIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
|
||||
auto A_ext = Reshape(ea_data_ext_tmp.Read(), faceDofs, faceDofs, 2, nf);
|
||||
auto AT_int = Reshape(ea_data_int.ReadWrite(), faceDofs, faceDofs, 2, nf);
|
||||
auto AT_ext = Reshape(ea_data_ext.ReadWrite(), faceDofs, faceDofs, 2, nf);
|
||||
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, nf,
|
||||
{
|
||||
for (int i = 0; i < faceDofs; i++)
|
||||
{
|
||||
@@ -105,7 +105,7 @@ void TransposeIntegrator::AssembleEAInteriorFaces(const FiniteElementSpace& fes,
|
||||
fes.GetMesh()->GetFaceGeometry(0))->GetDof();
|
||||
auto A_int = Reshape(ea_data_int.ReadWrite(), faceDofs, faceDofs, 2, nf);
|
||||
auto A_ext = Reshape(ea_data_ext.ReadWrite(), faceDofs, faceDofs, 2, nf);
|
||||
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, nf,
|
||||
{
|
||||
for (int i = 0; i < faceDofs; i++)
|
||||
{
|
||||
@@ -149,7 +149,7 @@ void TransposeIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace& fes,
|
||||
fes.GetMesh()->GetFaceGeometry(0))->GetDof();
|
||||
auto A_bdr = Reshape(ea_data_bdr_tmp.Read(), faceDofs, faceDofs, nf);
|
||||
auto AT_bdr = Reshape(ea_data_bdr.ReadWrite(), faceDofs, faceDofs, nf);
|
||||
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, nf,
|
||||
{
|
||||
for (int i = 0; i < faceDofs; i++)
|
||||
{
|
||||
@@ -167,7 +167,7 @@ void TransposeIntegrator::AssembleEABoundaryFaces(const FiniteElementSpace& fes,
|
||||
const int faceDofs = fes.GetTraceElement(0,
|
||||
fes.GetMesh()->GetFaceGeometry(0))->GetDof();
|
||||
auto A_bdr = Reshape(ea_data_bdr.ReadWrite(), faceDofs, faceDofs, nf);
|
||||
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
|
||||
MFEM_FORALL(f, nf,
|
||||
{
|
||||
for (int i = 0; i < faceDofs; i++)
|
||||
{
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user