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Author SHA1 Message Date
Mittal, Ketan adaf2bbec6 minor 2026-05-08 13:11:31 -07:00
Mittal, Ketan b8aa60060b 2D 2026-05-08 09:58:33 -07:00
Mittal, Ketan 38c243ab05 initial commit 2026-05-06 15:05:01 -07:00
325 changed files with 10460 additions and 41134 deletions
@@ -94,16 +94,6 @@ inputs:
description: If true, do not set any CXXFLAGS or LDFLAGS.
default: false
# Unfortunately, "uses:" fields cannot have references to variables like
# ${{env.MFEM_ACTIONS_VERSION}}, so the branch/tag name has to be hard coded.
# Therefore, in the future, when updating the version of the
# mfem/github-actions to use, we'll have to replace:
# - all definitions of MFEM_ACTIONS_VERSION and
# - all "uses:" fields that refer to mfem/github-actions.
MFEM_ACTIONS_VERSION:
description: Version (branch or tag) of the mfem/github-actions to use.
default: v2.7
runs:
using: 'composite'
steps:
@@ -128,7 +118,6 @@ runs:
echo UBSAN_LDFLAGS=${{inputs.UBSAN_LDFLAGS}} >> $GITHUB_ENV
echo MSAN_CXXFLAGS=${{inputs.MSAN_CXXFLAGS}} >> $GITHUB_ENV
echo MSAN_LDFLAGS=${{inputs.MSAN_LDFLAGS}} >> $GITHUB_ENV
echo MFEM_ACTIONS_VERSION=${{inputs.MFEM_ACTIONS_VERSION}} >> $GITHUB_ENV
shell: bash
- name: Env (dir)
+2 -2
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@@ -53,7 +53,7 @@ runs:
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
shell: bash
- uses: mfem/github-actions/build-mfem@v2.7
- uses: mfem/github-actions/build-mfem@v2.5
if: ${{steps.debug.outputs.cache-hit != 'true'}}
env:
CXXFLAGS: ${{env.CXXFLAGS}}
@@ -82,7 +82,7 @@ runs:
run: find . -type f -name '*.o' -delete
shell: bash
- uses: actions/upload-artifact@v7
- uses: actions/upload-artifact@v4
with:
name: build-${{inputs.par}}-${{inputs.sanitizer}}
path: mfem/build
-6
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@@ -12,11 +12,6 @@
name: 'Install MPI'
description: 'Installs MPI and set up its environment variables'
inputs:
NO_FLAGS:
description: If true, do not set any CXXFLAGS or LDFLAGS.
default: false
runs:
using: 'composite'
steps:
@@ -32,7 +27,6 @@ runs:
shell: bash
- name: Env (bis)
if: ${{ inputs.NO_FLAGS != 'true' }}
run: |
echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MPI_INC}} >> $GITHUB_ENV
echo LDFLAGS=${{env.LDFLAGS}} ${{env.MPI_LIB}} >> $GITHUB_ENV
+1 -1
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@@ -49,7 +49,7 @@ runs:
par: ${{inputs.par}}
sanitizer: ${{inputs.sanitizer}}
- uses: actions/download-artifact@v8
- uses: actions/download-artifact@v4
with:
name: build-${{inputs.par}}-${{inputs.sanitizer}}
path: mfem/build
+2 -2
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@@ -37,14 +37,14 @@ runs:
with:
path: ${{env.HYPRE_DIR}}
fail-on-cache-miss: true
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-${{env.MFEM_ACTIONS_VERSION}}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
- uses: actions/cache/restore@v5 # Cache for Metis
if: ${{inputs.par == 'true'}}
with:
path: ${{env.METIS_DIR}}
fail-on-cache-miss: true
key: ${{runner.os}}-build-${{env.METIS_DIR}}-${{env.MFEM_ACTIONS_VERSION}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
- name: Hypre/Metis links
if: ${{inputs.par == 'true'}}
-42
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@@ -1,42 +0,0 @@
# MFEM Pull Request Review Agent Guide
## Purpose and scope
Review MFEM PRs for correctness, maintainability, performance, portability, test coverage, and MFEM consistency. Use the diff and PR context; reference source files, tests, and CI results when available. Follow `CONTRIBUTING.md`, especially Developer Guidelines, PR rules, checklist, and testing.
## Critical review pillars
- Correctness and numerical behavior
- API and user-facing impact
- Performance implications
- Maintainability and portability
## Review workflow
1. Read the PR description, linked issues, and intended behavior.
2. Inspect the diff before commenting.
3. Identify affected MFEM components, examples, tests, build or docs changes, and downstream APIs.
4. Analyze the code against the critical review pillars.
5. Compare the change against nearby code and MFEM patterns; flag unmotivated deviations.
6. Check whether tests and documentation were updated appropriately.
7. Review CI results and suggest actions.
8. Produce a structured review with prioritized findings.
9. Always limit conclusions to available evidence.
## MFEM-specific review checklist
- Component-aware scope: identify the touched subsystem (FEM, solvers, preconditioners, linear algebra, mesh, examples, miniapps, build, or docs) and assess its impact against the review pillars.
- Numerical and algorithmic behavior: assess issues in convergence, stability, tolerances, precision, iteration limits, and failure handling. If clear opportunities exist to improve the algorithmic approach, call them out with expected impact.
- API and user-facing impact: assess backward compatibility, user-visible behavior and default changes, migration impact, deprecations, and whether documentation clearly explains user-facing API changes.
- Data structure and memory semantics: assess ownership, lifetime, aliasing, container behavior, and device-host synchronization.
- Parallel and serial behavior: assess whether the change preserves equivalent semantics in serial and parallel modes where applicable; if logic is currently mode-specific, check whether extension to the other mode is straightforward (clear abstractions, no hard-wired assumptions), document constraints, and call out expected behavior differences explicitly.
- Backend and portability impact: assess likely cross-backend risks in CPU, CUDA, HIP, OCCA, RAJA, partial assembly, fallback paths, compiler compatibility, and platform assumptions.
- Build, dependency, and configuration impact: assess CMake or make changes, optional dependency behavior, and feature-flag interactions.
- Tests and docs alignment: check available regression or unit coverage evidence for changed behavior, and ensure docs are updated for new flags, APIs, options, or behavior changes.
- MFEM developer-guideline fit: keep code lean, simple, general, logically separated, and portable; suggest C++17 improvements when they clearly improve safety, clarity, or maintainability.
- New source files, examples, or miniapps: if a PR adds source/header files, verify they are properly wired into the relevant `makefile` and `CMakeLists.txt`, referenced in docs where applicable (including `doc/CodeDocumentation.dox`), and added to top-level `.gitignore` only when generated artifacts require it.
- Changelog: verify `CHANGELOG` is updated if the PR introduces significant new features or user-facing changes.
- MFEM conventions: use `real_t`; use `mfem::out`/`mfem::err` instead of `std::cout`/`std::cerr` in library code; flag large/binary files; if AI assistance is apparent but undisclosed, suggest following `CONTRIBUTING.md`.
- Edge cases: if the PR touches complex or error-prone areas, suggest additional tests for edge cases, failure modes, and parallel behavior.
## Commenting guidelines
- Keep comments concise, actionable, and grounded in the diff.
- Focus on correctness, behavior changes, and user impact over style nits.
- Be professional, concise, collaborative, technically precise, and avoid unsupported assumptions.
+7 -3
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@@ -13,7 +13,7 @@ Note that some of these scripts use the shared MFEM GitHub Actions from the exte
<https://github.com/mfem/github-actions>
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch (or tag) in the above from which the action is taken.
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch in the above from which the action is taken.
The current CI workflows are:
@@ -29,12 +29,16 @@ Runs a number of static repository-level sanity checks.
- `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
## `mfem-analysis.yml` (`build-analysis`)
Checks if the code builds and satisfies minimal requirements.
- `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
## `builds-and-tests.yml`
Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
One matrix job runs `tests/scripts/gitignore` after `make test-noclean` to check generated artifacts against `.gitignore`.
Uses the following GitHub Actions from <https://github.com/mfem/github-actions>:
- `mfem/github-actions/build-hypre`
+24 -81
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@@ -40,7 +40,6 @@ env:
METIS_ARCHIVE_MAC: metis-4.0.3-mac.tgz
METIS_TOP_DIR: metis-4.0.3
MFEM_TOP_DIR: mfem
MFEM_ACTIONS_VERSION: v2.7
# Note for future improvements:
#
@@ -111,7 +110,6 @@ jobs:
build-system: make
hypre-target: int64
precision: fp64
gitignore-check: YES
- os: ubuntu-latest
target: opt
codecov: NO
@@ -142,10 +140,6 @@ jobs:
continue-on-error: ${{ matrix.enzyme && true || false }}
# Enable ccache for all jobs except Windows (would need sccache).
env:
USE_CCACHE: ${{ matrix.os != 'windows-latest' }}
steps:
# Fix 'No space left on device' errors for Ubuntu builds.
- name: Run Actions Cleaner
@@ -176,6 +170,20 @@ jobs:
env
shell: bash
# For info on Xcode see:
# - https://github.com/actions/runner-images/issues/12541
# - https://github.com/actions/runner-images/blob/releases/macos-15-arm64/20250811/images/macos/macos-15-arm64-Readme.md#xcode
- name: Xcode version setup (MacOS)
if: matrix.os == 'macos-latest'
run: |
XCODE_PATH="/Applications/Xcode_16.4.app"
echo "> sudo xcode-select -s ${XCODE_PATH}"
sudo xcode-select -s ${XCODE_PATH}
echo "> g++ -v"
g++ -v
echo "> clang++ -v"
clang++ -v
# Only get MPI if defined for the job.
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
@@ -220,11 +228,11 @@ jobs:
uses: actions/cache@v5
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -234,7 +242,7 @@ jobs:
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -250,11 +258,11 @@ jobs:
uses: actions/cache@v5
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.7
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
dir: ${{ env.METIS_TOP_DIR }}
@@ -294,55 +302,9 @@ jobs:
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
echo "OMPI_CXX=$LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
# Restore the compiler cache (ccache). The key embeds the run id, so new
# runs save a fresh snapshot; the restore-keys prefix warm-starts from the
# most recent prior run (incl. the base branch for PRs).
- name: cache ccache
if: ${{ env.USE_CCACHE == 'true' }}
uses: actions/cache@v5
with:
path: .ccache
key: ccache-${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}-${{ github.run_id }}
restore-keys: |
ccache-${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}-
# Configure ccache and select how it is injected into the MFEM build:
# - make: set CXX="ccache g++"; for MPI, OMPI_CXX="ccache g++" so mpicxx
# runs ccache around g++ (not ccache around the mpicxx wrapper).
# - cmake: set CMAKE_<LANG>_COMPILER_LAUNCHER=ccache.
# - enzyme: wrap the brew clang++ via OMPI_CXX.
# The chosen options are passed through build-mfem's 'config-options'
# input (see the build step below).
- name: configure ccache
if: ${{ env.USE_CCACHE == 'true' }}
run: |
command -v ccache >/dev/null 2>&1 || {
if [[ "${{ runner.os }}" == "Linux" ]]; then
sudo apt-get update && sudo apt-get install -y ccache
else
brew install ccache
fi
}
echo "CCACHE_DIR=${{ github.workspace }}/.ccache" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=1G" >> $GITHUB_ENV
echo "CCACHE_COMPILERCHECK=content" >> $GITHUB_ENV
# Ignore header timestamps (restamped by each checkout) so direct mode hits.
echo "CCACHE_SLOPPINESS=include_file_mtime,include_file_ctime,time_macros" >> $GITHUB_ENV
# Hash absolute paths relative to the workspace.
echo "CCACHE_BASEDIR=${{ github.workspace }}" >> $GITHUB_ENV
if [[ "${{ matrix.enzyme }}" == "true" ]]; then
echo "OMPI_CXX=ccache $LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
elif [[ "${{ matrix.build-system }}" == "cmake" ]]; then
echo 'CCACHE_CONFIG_OPTS=-DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_C_COMPILER_LAUNCHER=ccache' >> $GITHUB_ENV
else
echo "OMPI_CXX=ccache g++" >> $GITHUB_ENV
echo 'CCACHE_CONFIG_OPTS=CXX="ccache g++" MPICXX="mpicxx"' >> $GITHUB_ENV
fi
shell: bash
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.7
uses: mfem/github-actions/build-mfem@v2.5
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
@@ -355,14 +317,9 @@ jobs:
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
precision: ${{ matrix.precision }}
config-options: ${{ matrix.config-opts }} ${{ env.CCACHE_CONFIG_OPTS }}
config-options: ${{ matrix.config-opts }}
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
- name: ccache stats
if: ${{ env.USE_CCACHE == 'true' }}
run: ccache -s
shell: bash
# Run checks (and only checks) on debug targets
- name: checks
if: matrix.build-system == 'make' && matrix.target == 'dbg'
@@ -373,13 +330,7 @@ jobs:
- name: tests
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
run: |
cd ${{ env.MFEM_TOP_DIR }}
if [[ "${{ matrix.gitignore-check }}" == "YES" ]]; then
make test-noclean
else
make test
fi
shell: bash
cd ${{ env.MFEM_TOP_DIR }} && make test
- name: cmake checks
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
@@ -424,16 +375,8 @@ jobs:
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.7
uses: mfem/github-actions/upload-coverage@v2.5
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
- name: gitignore
if: matrix.gitignore-check == 'YES'
run: |
cd ${{ env.MFEM_TOP_DIR }}/tests/scripts
./runtest gitignore
-42
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@@ -1,42 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
---
# A closed PR's caches can never be restored again, so delete them to free
# space against the 10 GB per-repo cache limit.
name: Cleanup PR caches
on:
pull_request:
types: [closed]
permissions:
actions: write
jobs:
cleanup:
runs-on: ubuntu-latest
steps:
- name: Delete caches for the closed PR
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
GH_REPO: ${{ github.repository }}
PR_REF: refs/pull/${{ github.event.pull_request.number }}/merge
run: |
echo "Deleting caches for $PR_REF"
while :; do
ids=$(gh cache list --ref "$PR_REF" --limit 100 --json id --jq '.[].id')
[ -n "$ids" ] || break
echo "$ids" | while read -r id; do
[ -n "$id" ] || continue
echo "Deleting cache $id"
gh cache delete "$id" || echo " (already gone)"
done
done
-10
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@@ -14,19 +14,9 @@ name: "Static Analysis"
on:
push:
branches: ["master", "next"]
paths-ignore: &docs-only-paths
- "**/*.md"
- "doc/**"
- ".binder/**"
- "CITATION.cff"
- "LICENSE"
- "NOTICE"
- "CHANGELOG"
- "INSTALL"
pull_request:
# The branches below must be a subset of the branches above
branches: ["master"]
paths-ignore: *docs-only-paths
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
+100
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@@ -0,0 +1,100 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Build Analysis"
permissions:
actions: write
on:
push:
branches:
- master
- next
pull_request:
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
env:
HYPRE_ARCHIVE: v2.19.0.tar.gz
HYPRE_TOP_DIR: hypre-2.19.0
METIS_ARCHIVE: metis-4.0.3.tar.gz
METIS_TOP_DIR: metis-4.0.3
COVERAGE_ENV: mfem-coverage
jobs:
gitignore:
runs-on: ubuntu-latest
steps:
- name: checkout MFEM
uses: actions/checkout@v6
with:
path: mfem
- name: Get MPI (Linux)
run: |
sudo apt-get install openmpi-bin libopenmpi-dev
export OMPI_MCA_rmaps_base_oversubscribe=1
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v5
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v5
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.5
with:
os: ${{ runner.os }}
target: opt
codecov: NO
mpi: par
build-system: make
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: mfem
- name: test (no clean)
run: |
cd mfem && make test-noclean
- name: gitignore
run: |
cd mfem/tests/scripts
./runtest gitignore
+4 -33
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@@ -13,7 +13,6 @@ name: "Checks"
permissions:
actions: write
pull-requests: read
on:
push:
@@ -30,11 +29,6 @@ concurrency:
# by checking if the workflow trigger is 'push' ("github.event_name == 'push'")
# and if we are in a fork ("github.event.pull_request.head.repo.full_name !=
# github.repository").
#
# The logic for the branch-history check is slightly different, since that check
# also inspects the PR's labels to allow for overriding failures. In this case,
# we run on all 'pull_request' triggers, but only run for 'push' triggers that
# do not correspond to any open PRs.
jobs:
file-headers-check:
@@ -134,7 +128,10 @@ jobs:
branch-history:
if: |
github.ref != 'refs/heads/next' && github.ref != 'refs/heads/master'
github.ref != 'refs/heads/next' &&
github.ref != 'refs/heads/master' &&
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-latest
steps:
- name: checkout mfem
@@ -142,27 +139,7 @@ jobs:
with:
fetch-depth: 0
- name: check for pull request
id: check_pr
if: github.event_name == 'push'
env:
GH_TOKEN: ${{ github.token }}
run: |
pr_exists=$(gh pr list --repo "$GITHUB_REPOSITORY" \
--head "$GITHUB_REF_NAME" \
--state open \
--json number \
--jq 'length > 0')
echo "pr_exists=$pr_exists" >> "$GITHUB_OUTPUT"
- name: branch-history
id: branch_history
if: |
(github.event_name == 'pull_request' ||
github.event_name == 'workflow_dispatch' ||
steps.check_pr.outputs.pr_exists == 'false')
continue-on-error: ${{ contains(github.event.pull_request.labels.*.name,
'branch-history-override') }}
run: |
# We override origin to make sure we point to the main repo.
# This is to have consistent test results on PRs from forks.
@@ -170,9 +147,3 @@ jobs:
git remote add origin https://github.com/mfem/mfem.git
git checkout -b gh-actions-branch-history
./config/githooks/pre-push --history
- name: report branch-history override
if: steps.branch_history.outcome == 'failure'
run: |
echo "::warning::branch-history check failed, but the" \
"'branch-history-override' label is set."
+2 -6
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@@ -19,22 +19,18 @@ jobs:
steps:
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/config
with:
NO_FLAGS: true
- name: Cache
id: cache
uses: actions/cache@v5
with:
path: ${{env.HYPRE_DIR}}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
- name: Setup
if: steps.cache.outputs.cache-hit != 'true'
uses: ./.github/actions/sanitize/mpi
with:
NO_FLAGS: true
- name: Build
if: steps.cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{env.HYPRE_TGZ}}
dir: ${{env.HYPRE_DIR}}
+2 -6
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@@ -19,22 +19,18 @@ jobs:
steps:
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/config
with:
NO_FLAGS: true
- name: Cache
id: cache
uses: actions/cache@v5
with:
path: ${{env.METIS_DIR}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-${{env.MFEM_ACTIONS_VERSION}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
- name: Setup
if: steps.cache.outputs.cache-hit != 'true'
uses: ./.github/actions/sanitize/mpi
with:
NO_FLAGS: true
- name: Build
if: steps.cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.7
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{env.METIS_TGZ}}
dir: ${{env.METIS_DIR}}
+2 -2
View File
@@ -146,7 +146,7 @@ jobs:
if: ${{steps.restore.outputs.cache-hit != 'true'}}
working-directory: mfem/build/tests/unit
run: find . -type f -name '*.o' -delete
- uses: actions/upload-artifact@v7
- uses: actions/upload-artifact@v4
with:
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
path: mfem/build/tests/unit/${{env.unit_tests}}
@@ -172,7 +172,7 @@ jobs:
par: ${{inputs.par}}
sanitizer: ${{inputs.sanitizer}}
cache-path: mfem/build/tests/unit/${{env.unit_tests}}
- uses: actions/download-artifact@v8
- uses: actions/download-artifact@v4
if: ${{steps.restore.outputs.cache-hit != 'true'}}
with:
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
-10
View File
@@ -17,17 +17,7 @@ permissions:
on:
push:
branches: ["master", "next"]
paths-ignore: &docs-only-paths
- "**/*.md"
- "doc/**"
- ".binder/**"
- "CITATION.cff"
- "LICENSE"
- "NOTICE"
- "CHANGELOG"
- "INSTALL"
pull_request:
paths-ignore: *docs-only-paths
workflow_dispatch:
concurrency:
-1
View File
@@ -260,7 +260,6 @@ miniapps/meshing/polar-nc
miniapps/meshing/mesh-quality
miniapps/meshing/hpref
miniapps/meshing/phpref
miniapps/meshing/pref321
miniapps/meshing/mobius-strip.mesh
miniapps/meshing/klein-bottle.mesh
miniapps/meshing/toroid-*.mesh
+2 -4
View File
@@ -102,14 +102,12 @@ report_baseline:
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
status=0
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir} || { status=1; }
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
>> ${rundir}/pipeline.txt
# We create an autotest-email.html file, because that's how we signal
# that there was an error / diff (temporary).
if [[ $status -ne 0 ]] || \
[[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
[[ -f ${rundir}/${BASELINE_TEST}-${MACHINE_NAME}.diff ]]; then
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
fi
+15 -139
View File
@@ -11,160 +11,36 @@
Version 4.9.1 (development)
===========================
- Added policy for AI-assisted contribution to CONTRIBUTING.md.
- Policy for AI-assisted contribution added to CONTRIBUTING.md
Discretization improvements
---------------------------
- Improved FindPointsGSLIB surface mesh capability with support for simplices
and an option to specify axis-aligned bounding box padding for near-surface
point queries.
- Replaced legacy simplex quadrature rules with symmetric positive-weight
rules for triangles (orders 0-25) and tetrahedra (orders 0-20). These
rules guarantee all-positive weights and interior quadrature points,
improving numerical stability. Higher orders fall back to Grundmann-Moller.
Triangle rules: Witherden & Vincent, Comput. Math. Appl. 69(10):1232-1241,
2015.
Tet rules (d=1-13): Witherden & Vincent (ibid).
Tet rules (d=14-20): Chuluunbaatar et al., Comput. Math. Appl. 124:89-97,
2022.
- Added GPU-enabled partial assembly for simplicial Bernstein H1 basis based on
ragged tensor algorithms (see DOI: 10.1137/11082539X) for mass and diffusion
integrators.
- Replaced legacy simplex quadrature rules with symmetric positive weight rules
for triangles (orders 0-25) and tetrahedra (orders 0-20). These rules
guarantee all-positive weights and interior quadrature points, improving
numerical stability. Higher orders fall back to Grundmann-Moller.
* Triangle rules: Witherden and Vincent, DOI: 10.1016/j.camwa.2015.03.017
* Tet rules (d=1-13): Witherden and Vincent (same as above)
* Tet rules (d=14-20): Chuluunbaatar et al., DOI: 10.1016/j.camwa.2022.08.016
- Added support for general 1D Gauss-Jacobi quadrature rules and Stroud conical
quadrature rules on triangles and tetrahedra.
- Improved the GridFunction projection routines. Projections work for Scalar,
- Improved the gridfunction projection routines. Projections work for Scalar,
Vector and VectorFE, also NURBS versions. Optionally different types of
projections can be selected, default behavior has not changed.
projections can be selected, default behaviour has not changed.
- Added GridFunction projection methods for trace spaces, i.e., project
coefficients on the mesh skeleton.
- Added methods to estimate function extremum using piecewise linear bounds plus
- Added methods to estimate function extremum using piecewise linear bounds +
recursive subdivision.
- Extend FindPointsGSLIB to support surface meshes.
- Added support for complex-valued mixed bilinear forms via the new classes
MixedSesquilinearForm and ParMixedSesquilinearForm, mirroring the existing
SesquilinearForm classes. Rectangular complex operators are now also
handled correctly by ComplexSparseMatrix::GetSystemMatrix and
ComplexHypreParMatrix::GetSystemMatrix, which previously assumed equal
trial and test spaces.
- Added FiniteElementSpace::GetBoundaryLoopEdgeDofs to extract the edge DOFs on
the perimeter loop of a set of boundary elements, with a ParFiniteElementSpace
overload that reconciles the selection across processor boundaries so the
result is partition invariant. This is useful for imposing boundary conditions
on boundary edge DOFs.
- Added a MaxAbs reduction to GroupCommunicator that selects the signed value of
largest magnitude across a group, keeping its sign. Equal-magnitude ties
resolve deterministically to the positive value.
Meshing improvements
--------------------
- Added support for nonuniform anisotropic mesh refinement on parallel quad/hex
meshes with arbitrary spacing in each direction. This enables in particular
3:1 refinement in parallel, as demonstrated in the new meshing miniapp pref321.
- Added option to guarantee mesh validity during TMOP-based r-adaptivity, using
bounds on the determinant of the mesh transformation Jacobian.
- Added PA support for TMOP's adaptive limiting functionality. Multiple
GridFunctions and Coefficients can be combined to form a composite term.
- Improved support for 1D NURBS meshes with variable order, including using
the patches construct for 1D NURBS meshes.
- Added the option to include material interfaces (faces separating elements
with different element attributes) as additional boundary elements, for
parallel visualization, e.g. with GLVis. This is supported by both the Print
and PrintAsOne methods of ParMesh. See ParMesh::SetPrintInterfaces().
Linear and nonlinear solvers
----------------------------
- Added support for trace spaces in PRefinementTransferOperator. This is used in
PRefinement multigrid methods for problems posed on trace spaces (see e.g. the
DPG miniapps).
- Added new class MultiVector: an array of Vectors of different sizes where each
Vector can be allocated independently. Also, added associated methods in class
Operator: MultMV, MultTransposeMV, and GetGradientMV, that use MultiVector
objects for input and/or output parameters. [PR #5249]
GPU computing
-------------
- Improved partial assembly for VectorDivergenceIntegrator with shared-memory
kernels, kernel registration, and transpose support.
- Improved partial-assembly diagonal kernels for VectorMassIntegrator (shared-
memory specializations) and ElasticityIntegrator (no scratch Q-vector).
- Added PA gradient and diagonal support for VectorConvectionNLFIntegrator
(AssembleGradPA, AddMultGradPA, AssembleGradDiagonalPA).
- Added device assembly support for 3D H(curl) VectorFEDomainLFIntegrator.
- Added partial assembly support for MixedScalarWeakGradientIntegrator.
- Added partial assembly support for MixedDotProductIntegrator.
- Added partial assembly support for MixedScalarCrossProductIntegrator.
- Added partial assembly support for MixedScalarWeakCrossProductIntegrator.
- Added partial assembly support for MixedVectorGradientIntegrator for H1->RT.
- Added support for device partial assembly CurlInterpolator.
This supports 2D and 3D variants:
2D H1 (out-of-plane) to RT (in-plane)
2D ND (in-plane) to Integral L2 (out-of-plane)
3D ND to RT
- Added NVIDIA cuDSS library interface. Implementation examples have been
added to ex1 and ex1p. See https://developer.nvidia.com/cudss for more
details. Supported versions >= 0.6.0.
- Allow specifying GPU kernel launch bounds for native and RAJA GPU backends.
- Changed VectorFEMassIntegrator to use kernel specialization dispatch for
partial assembly.
- Added support for FiniteElement::MapType::INTEGRAL spaces to
QuadratureInterpolator.
- Added support for FiniteElement::MapType::INTEGRAL spaces to
MixedScalarCurlIntegrator.
New and updated examples and miniapps
-------------------------------------
- The Lorentz miniapp (in miniapps/electromagnetics) has been updated to
leverage the ParticleSet capability.
- Added (Complex)PRefinementMultigrid solver option in the DPG miniapps.
Miscellaneous
-------------
- Fixed signed DOF handling in ParGridFunction reading (read constructor) and
saving via SaveAsOne(). Simplified the process of applying the DOF signs by
using the new method ApplyDofSigns() in class ParFiniteElementSpace: the
method will return immediately if no sign flips are needed.
- Added support for coefficient-weighted LOR transfer in
L2ProjectionGridTransfer. The transfer conserves the weighted mass, for
example when transferring velocity while conserving density-weighted momentum.
This is illustrated in the lor-transfer and plor-transfer miniapps.
- Added support for saving DataCollection output on the node-local storage,
instead of requiring that the filesystem is shared among all the ranks.
API changes
-----------
- Removed ProjectGrad from 2D RT elements. Users should use ProjectCurl instead.
This also fixes a bug where ProjectCurl was returning the negative curl,
identical to ProjectGrad.
- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
capability.
Version 4.9, released on Dec 11, 2025
+13 -20
View File
@@ -88,9 +88,18 @@ if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
# RAJA requires C++20:
if ((MFEM_USE_UMPIRE OR MFEM_USE_RAJA) AND ("${CMAKE_CXX_STANDARD}" LESS "20"))
set(CMAKE_CXX_STANDARD 20 CACHE STRING "C++ standard to use." FORCE)
# Ginkgo requires C++17:
if ((MFEM_USE_GINKGO) AND ("${CMAKE_CXX_STANDARD}" LESS "17"))
set(CMAKE_CXX_STANDARD 17 CACHE STRING "C++ standard to use." FORCE)
# Google Benchmark, SUNDIALS, STRUMPACK, Tribol, RAJA and Umpire require C++14:
elseif ((MFEM_USE_BENCHMARK OR
MFEM_USE_SUNDIALS OR
MFEM_USE_STRUMPACK OR
MFEM_USE_TRIBOL OR
MFEM_USE_RAJA OR
MFEM_USE_UMPIRE) AND
("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14 CACHE STRING "C++ standard to use." FORCE)
endif()
# Include xSDK default CMake file.
@@ -230,13 +239,6 @@ else()
set(MFEM_DEBUG OFF)
endif()
# Shadow warnings for clang only; GCC's -Wshadow flags more.
if (CMAKE_CXX_COMPILER_ID MATCHES "Clang")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pedantic -Wall -Wshadow")
elseif (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pedantic -Wall")
endif()
# Shared build on Windows
if (WIN32 AND BUILD_SHARED_LIBS)
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
@@ -431,15 +433,6 @@ if (MFEM_USE_STRUMPACK)
endif()
endif()
# cuDSS can only be enabled in CUDA
if (MFEM_USE_CUDSS)
if (MFEM_USE_CUDA)
find_package(CUDSS REQUIRED)
else()
message(FATAL_ERROR " *** cuDSS requires that CUDA be enabled.")
endif()
endif()
# GnuTLS
if (MFEM_USE_GNUTLS)
find_package(_GnuTLS REQUIRED)
@@ -638,7 +631,7 @@ find_package(Threads REQUIRED)
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB HDF5
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CUDSS CALIPER CODIPACK
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CALIPER CODIPACK
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
ALGOIM ENZYME CUDA::cudart)
+65 -64
View File
@@ -3,12 +3,12 @@
</p>
<p align="center">
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-blue.svg"></a>
<a href="https://github.com/mfem/mfem/releases/latest"><img alt="GitHub release" src="https://img.shields.io/github/v/release/mfem/mfem"></a>
<a href="https://github.com/mfem/mfem/actions/workflows/repo-check.yml?query=branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml?query=branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
<a href="https://docs.mfem.org/html/index.html"><img alt="Documentation" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
</p>
@@ -84,7 +84,7 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
follow the [MFEM PR Rules](#mfem-pr-rules).
- When your contribution is fully working and ready to be reviewed, add
the `ready-for-review` label.
- PRs are treated similarly to journal submission, with an "editor" assigning two
- PRs are treated similarly to journal submission with an "editor" assigning two
reviewers to evaluate the changes.
- The reviewers have 3 weeks to evaluate the PR and work with the author to
fix issues and implement improvements.
@@ -125,7 +125,7 @@ The MFEM source code has the following structure:
│ ├── petsc
│ ├── pumi
│ ├── sundials
└── superlu
| └── superlu
├── fem
│ ├── ceed
│ ├── dfem
@@ -137,6 +137,10 @@ The MFEM source code has the following structure:
│ ├── moonolith
│ ├── qinterp
│ └── tmop
│ | ├── assemble
│ | ├── metrics
│ | ├── mult
│ | └── tools
├── general
├── linalg
│ ├── batched
@@ -149,10 +153,11 @@ The MFEM source code has the following structure:
│ ├── common
│ ├── contact
│ ├── dfem
│ ├── diag-smoothers
│ ├── dpg
│ ├── electromagnetics
│ ├── fluids
│ │ ├── navier
│ │ └── schrodinger-flow
│ ├── gslib
│ ├── hdiv-linear-solver
│ ├── hooke
@@ -162,7 +167,6 @@ The MFEM source code has the following structure:
│ ├── nurbs
│ ├── parelag
│ ├── performance
│ ├── plasma
│ ├── shifted
│ ├── solvers
│ ├── spde
@@ -193,15 +197,15 @@ respectively.
- The main finite element classes are:
+ [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElementCollection.html)
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
+ [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
+ [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
- The main linear algebra classes and sources are
+ [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1Vector.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
+ [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
+ Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
@@ -213,8 +217,8 @@ shared geometric entities between different tasks. The parallel source files
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
- The main parallel classes are
+ [`ParMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParNCMesh.html)
+ [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
+ [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
+ [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
+ [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
@@ -224,14 +228,14 @@ have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
#### GPU and general device support
GPU and multi-core CPU support is based on device kernels supporting different
backends (CUDA, HIP, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html), [`hip.hpp`](https://docs.mfem.org/html/hip_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
#### Utilities, building and documentation
- The `general/` directory contains C++ classes that serve as utilities for
@@ -245,8 +249,8 @@ device/host memory manager.
- `examples` and `miniapps` respectively gather simple and more fully-featured
demonstrations of the usage on MFEM. They both rely on `data/` for the
collection of meshes.
- The `tests/` directory contains a unit test suite, additional tests, and
benchmarks.
- The `tests/` directory contains a unit test suite and will later contain more
tests that run example codes.
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
website.
@@ -280,8 +284,8 @@ Before you can start, you need a GitHub account, here are a few suggestions:
the top of https://github.com/mfem.
- Consider making your membership public by going to https://github.com/orgs/mfem/people
and clicking on the organization visibility drop box next to your name.
- Project discussions and announcements will be posted at https://github.com/orgs/mfem/discussions,
tagging the `@mfem/everyone` team when appropriate.
- Project discussions and announcements will be posted at
https://github.com/orgs/mfem/teams/everyone.
#### Structure
- The MFEM source code is in the [mfem](https://github.com/mfem/mfem)
@@ -341,12 +345,11 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- Well-designed simple code is frequently more general and powerful.
- Lean code base is easier to understand by new collaborators.
- New features should be added only if they are necessary or generally useful.
- Introduction of language constructs not currently used in MFEM should be
- Introduction of language constructions not currently used in MFEM should be
justified and generally avoided (to maintain portability to various systems
and compilers, including early access hardware).
- We prefer basic C++. Use C++17 features judiciously, prioritizing readability,
consistency with existing MFEM code, and portability to different systems,
compilers and device backends.
- We prefer basic C++ and the C++03 standard, to keep the code readable by
a large audience and to make sure it compiles anywhere.
- *Keep the code general and reasonably efficient*
- The main goal is fast prototyping for research and application development.
@@ -389,7 +392,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- When your branch is ready for other developers to review / comment on
the code, create a pull request towards `mfem:master`.
- Pull requests typically have titles like:
- Pull request typically have titles like:
`Description [new-feature-dev]`
@@ -410,12 +413,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- Add a description, appropriate labels and assign yourself to the PR. The MFEM
team will add reviewers as appropriate.
- List outstanding TODO items in the description.
- List outstanding TODO items in the description, see PR #222 for an example.
- When your contribution is fully working and ready to be reviewed, add
or request the `ready-for-review` label.
the `ready-for-review` label.
- PRs are treated similarly to journal submission, with an "editor" assigning
- PRs are treated similarly to journal submission with an "editor" assigning
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
the PR and work with the author to implement improvements and fix issues.
@@ -441,7 +444,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
checks in GitHub Actions enforce MFEM-specific rules which are explained in
the error messages and the `tests/scripts` directory.
- Also note that the tests `branch-history` and `repo-check` found in GitHub
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
Actions can be triggered automatically before each push using git hooks. See
the [git hooks README](config/githooks/README.md) for a detailed explanation.
@@ -498,15 +501,15 @@ Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their a
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
4. To seek help from the editors in case of difficulties.
3. To seek help from the editors in case of difficulties.
5. To complete the review in a timely manner: 3 weeks from assignment.
4. To complete the review in a timely manner: 3 weeks from assignment.
6. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
7. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
8. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
#### Responsibilities of Authors
@@ -532,30 +535,30 @@ Before a PR can be merged, it should satisfy the following:
- [ ] Code builds.
- [ ] Code passes `make style`.
- [ ] Update `CHANGELOG`:
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
- [ ] Update `INSTALL`:
- [ ] Has a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
- [ ] Have the version ranges for any required or optional libraries changed?
- [ ] Does `make` or `cmake` have a new target?
- [ ] Did the requirements or the installation process change? *(rare)*
- [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
- [ ] Have the version ranges for any required or optional libraries changed?
- [ ] Does `make` or `cmake` have a new target?
- [ ] Did the requirements or the installation process change? *(rare)*
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
- [ ] `.github`
- [ ] `.appveyor.yml`
- [ ] `.github`
- [ ] `.appveyor.yml`
- [ ] Update `.gitignore`:
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
- [ ] Add new patterns (just for the new files above) and re-run the above test.
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
- [ ] Add new patterns (just for the new files above) and re-run the above test.
- [ ] New examples:
- [ ] All sample runs at the top of the example source file work.
- [ ] Update `examples/makefile`:
- [ ] All sample runs at the top of the example source file work.
- [ ] Update `examples/makefile`:
- [ ] Add the example code to the appropriate `SEQ_EXAMPLES` and `PAR_EXAMPLES` variables.
- [ ] Add any files generated by it to the `clean` target.
- [ ] Add the example binary and any files generated by it to the top-level `.gitignore` file.
- [ ] Update `examples/CMakeLists.txt`:
- [ ] Update `examples/CMakeLists.txt`:
- [ ] Add the example code to the `ALL_EXE_SRCS` variable.
- [ ] Make sure `THIS_TEST_OPTIONS` is set correctly for the new example.
- [ ] List the new example in `doc/CodeDocumentation.dox`.
- [ ] If new examples directory (e.g. `examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
- [ ] If new examples directory (e.g.`examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
- [ ] Update or add example-specific documentation, see e.g. the `src/examples.md`.
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
@@ -572,13 +575,13 @@ Before a PR can be merged, it should satisfy the following:
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
- [ ] Consider adding a new test for the new miniapp.
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
- [ ] New capability:
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
@@ -680,7 +683,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
- [ ] Update URL shortlinks:
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
- [ ] Add the new shortlinks to the MFEM package in `spack`.
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
- [ ] Update website in `mfem/web` repo:
- Update version and shortlinks in `src/index.md` and `src/download.md`.
- Use [cloc-1.62.pl](http://cloc.sourceforge.net/) and `ls -lh` to estimate the SLOC and the tarball size in `src/download.md`.
@@ -732,24 +735,22 @@ commit or push, see the [README](config/githooks/README.md) in the `config/githo
directory.
### GitHub Actions smoke tests
### Linux and Mac smoke tests
We use GitHub Actions to drive the default tests on the `master` and `next`
branches. See the `.github/workflows` files and the logs at
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
GitHub Actions testing should be kept lightweight, as there is a time
constraint on jobs. The current workflows cover Linux, macOS, and Windows
configurations.
Testing using GitHub Actions should be kept lightweight, as there is a time
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
- Tests on the `next` branch are currently scheduled to run each night.
### Additional Windows smoke test
We also use Appveyor to test building with the MS Visual C++ compiler in a Windows
environment, as well as to test the CMake build. See the `.appveyor.yml` file
and the build logs at
### Windows smoke test
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
environment, as well as to test the CMake build. See the `.appveyor` file and the
build logs at
[https://ci.appveyor.com/project/mfem/mfem](https://ci.appveyor.com/project/mfem/mfem).
CMake is used to generate the MSVC Project files and drive the build. A release
+16 -31
View File
@@ -38,13 +38,14 @@ the option MFEM_USE_METIS.
MFEM also includes support for devices such as GPUs, and programming models such
as CUDA, HIP, OCCA, OpenMP and RAJA.
- Starting with version 4.9, MFEM requires a C++17 compiler.
- Starting with version 4.0, MFEM requires a C++11 compiler. We recommend using
a newer compiler, e.g. GCC version 4.9 or higher.
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
https://developer.nvidia.com/cuda-toolkit
- HIP support requires an AMD GPU and an installation of the ROCm software stack
https://rocm.docs.amd.com
https://rocmdocs.amd.com
- OCCA support requires the OCCA library
https://libocca.org
@@ -82,9 +83,9 @@ Serial build:
Parallel build:
(download hypre and METIS 4 from above URLs)
(build METIS 4 in ../metis-4.0 relative to mfem/)
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
(build hypre in ../hypre relative to mfem/)
make parallel -j 4
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
CUDA build:
make cuda -j 4
@@ -114,14 +115,14 @@ Serial build:
Parallel build:
(download hypre and METIS 4 from above URLs)
(build METIS 4 in ../metis-4.0 relative to mfem/)
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
(build hypre in ../hypre relative to mfem/)
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
make -j 4
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
Parallel build with fetching of hypre and METIS:
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
mkdir <mfem-buil-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DMFEM_FETCH_TPLS=YES
make -j 4
@@ -133,8 +134,7 @@ CUDA build:
HIP build:
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 \
-DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 -DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
make -j 4
Example codes (serial/parallel, depending on the build):
@@ -269,7 +269,6 @@ Compilers:
CXX - C++ compiler, serial build
MPICXX - MPI C++ compiler, parallel build
CUDA_CXX - The CUDA compiler, 'nvcc' or 'clang++'
HIP_CXX - The HIP compiler, e.g. 'hipcc'
Compiler options:
OPTIM_FLAGS - Options for optimized build
@@ -396,11 +395,6 @@ MFEM_USE_STRUMPACK = YES/NO
classes. When enabled, this option uses the STRUMPACK_* library options, see
below.
MFEM_USE_CUDSS = YES/NO
Enable MFEM functionality based on the cuDSS library. When using cuDSS, CUDA
support must be also enabled in MFEM, i.e. MFEM_USE_CUDA=YES must be set.
When enabled, this option uses the CUDSS_* library options, see below.
MFEM_USE_GINKGO = YES/NO
Enable MFEM functionality based on the Ginkgo library, which provides
iterative linear solvers and preconditioners with OpenMP, CUDA backends, see
@@ -560,13 +554,13 @@ MFEM_USE_RAJA = YES/NO
MFEM_USE_OCCA = YES/NO
Enables support for the OCCA library in MFEM. OCCA is an open-source library
which aims to make it easy to program different types of devices (e.g. CPU,
GPU, FPGA) by providing a unified API for interacting with JIT-compiled
GPU, FPGA) by providing an unified API for interacting with JIT-compiled
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
MFEM_USE_GSLIB = YES/NO
Enables MFEM functionality based on the GSLIB library, and specifically its
FindPoints component, which provides robust algorithms to evaluate finite
FindPoints component, which provides a robust algorithms to evaluate finite
element functions in a collection of points in physical space. When enabled,
the user can use the GSLIB-FindPoints methods as shown in miniapps/gslib.
@@ -725,18 +719,9 @@ The specific libraries and their options are:
Options: STRUMPACK_OPT, STRUMPACK_LIB.
Versions: STRUMPACK >= 3.0.0.
- CUDSS (optional), used when MFEM_USE_CUDSS = YES. Note that CUDSS requires
CUDA 12.x toolkit and the cuDSS libraries. The supported communication backend
is OpenMPI 4.x (default), and OpenMPI 4.x or a later version must be pre-built.
The source files in the cuDSS tarball provide guidance for developing custom
MPI implementations.
URL: https://developer.nvidia.com/cudss
https://docs.nvidia.com/cuda/cudss/advanced_features.html#communication-layer-library-in-cudss
Options: CUDSS_OPT, CUDSS_LIB.
Versions: cuDSS >= 0.6.0.
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Ginkgo may have additional
requirements and module-specific dependencies; see the webpage below.
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
C++ compiler that supports the C++-17 standard. For additional requirements
and dependencies of specific modules, see the Ginkgo webpage below.
URL: https://ginkgo-project.github.io
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
Debug).
@@ -808,7 +793,7 @@ The specific libraries and their options are:
Options: CONDUIT_OPT, CONDUIT_LIB.
Versions: Conduit >= 0.3.1.
- ADIOS2 (optional), used when MFEM_USE_ADIOS2 = YES.
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
URL: https://adios2.readthedocs.io/
Versions: ADIOS >= 2.5.0.
@@ -884,7 +869,7 @@ The specific libraries and their options are:
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
Versions: RAJA >= 2022.10.3.
- Moonolith (optional), used when MFEM_USE_MOONOLITH = YES.
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
URL: https://bitbucket.org/zulianp/par_moonolith
Options: MOONOLITH_DIR
Versions: MOONOLITH >= 1.1.0.
@@ -972,7 +957,7 @@ CMAKE_BUILD_TYPE which can be set to standard values like "Debug", and "Release"
To use a specific generator use the "-G <generator>" option of cmake:
cmake <mfem-source-dir> -G "Xcode"
cmake <mfem-source-dir> -G "Visual Studio 17 2022"
cmake <mfem-source-dir> -G "Visual Studio 12 2013"
cmake <mfem-source-dir> -G "MinGW Makefiles"
With CMake it is possible to build MFEM as a shared library using the standard
@@ -1217,7 +1202,7 @@ larger problems, there are two options:
Specific options for HIP
========================
MFEM expects the `ROCM_PATH` environment variable to be set to the path of the
ROCm install, as well as having `$ROCM_PATH/bin` in `PATH`.
ROCM install, as well as having `$ROCM_PATH/bin` in `PATH`.
Specific options for RAJA+HIP+MPI
=================================
-1
View File
@@ -28,7 +28,6 @@ license files. These software products and their licenses are as follows:
* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
* gslib (fem/gslib.{cpp,hpp}, mesh/bb_grid_map.{cpp,hpp}) -- BSD 3-clause license
* Picojson (fem/picojson.h) -- Custom 2-clause license
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
* Zstr (general/zstr.hpp) -- MIT license
-5
View File
@@ -35,7 +35,6 @@ set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
set(MFEM_USE_CUDSS @MFEM_USE_CUDSS@)
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
set(MFEM_USE_MAGMA @MFEM_USE_MAGMA@)
@@ -110,10 +109,6 @@ if (MFEM_USE_RAJA)
find_dependency(RAJA)
endif()
if (MFEM_USE_CUDSS)
find_dependency(cudss)
endif (MFEM_USE_CUDSS)
if (MFEM_USE_UMPIRE)
find_dependency(umpire)
endif()
-9
View File
@@ -108,15 +108,6 @@
// Enable MFEM functionality based on the STRUMPACK library.
#cmakedefine MFEM_USE_STRUMPACK
// Enable MFEM functionality based on the cuDSS library.
#cmakedefine MFEM_USE_CUDSS
// CUDSS communication layer library path
#cmakedefine MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
// CUDSS threading layer library path
#cmakedefine MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
// Enable functionality based on the Ginkgo library.
#cmakedefine MFEM_USE_GINKGO
-68
View File
@@ -1,68 +0,0 @@
if (NOT cudss_DIR AND CUDSS_DIR)
set(cudss_DIR ${CUDSS_DIR}/lib/cmake/cudss)
endif()
message(STATUS "Looking for CUDSS ...")
message(STATUS " in CUDSS_DIR = ${CUDSS_DIR}")
message(STATUS " cudss_DIR = ${cudss_DIR}")
find_package(cudss)
set(CUDSS_FOUND ${cudss_FOUND})
set(CUDSS_LIBRARIES "cudss")
if (CUDSS_FOUND)
message(STATUS
"Found CUDSS target: ${CUDSS_LIBRARIES} (version: ${cudss_VERSION})")
else()
set(msg STATUS)
if (CUDSS_FIND_REQUIRED)
set(msg FATAL_ERROR)
endif()
message(${msg}
"CUDSS not found. Please set CUDSS_DIR to the install prefix.")
endif()
if(CUDSS_FOUND AND TARGET cudss)
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION)
if(NOT CUDSS_LIBRARY_LOCATION)
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION_RELEASE)
endif()
if(CUDSS_LIBRARY_LOCATION)
get_filename_component(CUDSS_LIBRARY_DIR "${CUDSS_LIBRARY_LOCATION}" DIRECTORY)
else()
message(WARNING "Could not determine the location of the cuDSS library.")
endif()
else()
message(WARNING "cuDSS target not available; cannot determine library directory.")
endif()
# Set the full name of the cuDSS threading library if OpenMP is enabled.
# The threading layer library (libcudss_mtlayer_gomp.so) is located under the
# cuDSS library directory by default.
if (MFEM_USE_OPENMP)
find_file(
CUDSS_THREADING_LIB
NAMES libcudss_mtlayer_gomp.so
PATHS ${CUDSS_LIBRARY_DIR}
NO_DEFAULT_PATH
)
if (NOT DEFINED MFEM_CUDSS_THREADING_LIB AND CUDSS_THREADING_LIB)
set(MFEM_CUDSS_THREADING_LIB "${CUDSS_THREADING_LIB}")
endif()
message(STATUS "CUDSS threading layer library: ${MFEM_CUDSS_THREADING_LIB}")
endif()
# Set the full name of the cuDSS communication library if MFEM use OpenMPI.
# The communication layer library (libcudss_commlayer_mpi.so) is located under the
# cuDSS library directory by default.
# The communication layer library is used pre-built communication layers for OpenMPI
# by default.
if (MFEM_USE_MPI)
find_file(
CUDSS_COMM_LIB
NAMES libcudss_commlayer_openmpi.so
PATHS ${CUDSS_LIBRARY_DIR}
NO_DEFAULT_PATH
)
if (NOT DEFINED MFEM_CUDSS_COMM_LIB AND CUDSS_COMM_LIB)
set(MFEM_CUDSS_COMM_LIB "${CUDSS_COMM_LIB}")
endif()
message(STATUS "CUDSS communication layer library: ${MFEM_CUDSS_COMM_LIB}")
endif()
+10 -8
View File
@@ -18,17 +18,19 @@
if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
enable_language(C)
set(GSLIB_FETCH_VERSION 1.0.9)
add_library(GSLIB STATIC IMPORTED)
# set options (technically flags because GSLIB does not use cmake)
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
set(GSLIB_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
if (BUILD_SHARED_LIBS)
set(GSLIB_FLAGS "${GSLIB_FLAGS} -fPIC")
set(GSLIB_FETCH_VERSION 1.0.9)
set(GSLIB_C_FLAGS ${CMAKE_C_FLAGS_${BUILD_TYPE}})
if (CMAKE_C_FLAGS)
set(GSLIB_C_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
endif()
if (BUILD_SHARED_LIBS)
set(GSLIB_C_FLAGS "${GSLIB_C_FLAGS} -fPIC")
endif()
add_library(GSLIB STATIC IMPORTED)
# define external project and create future include directory so it is present
# to pass CMake checks at end of MFEM configuration step
message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_FLAGS}")
message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_C_FLAGS}")
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/gslib)
include(ExternalProject)
ExternalProject_Add(gslib
@@ -38,7 +40,7 @@ if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
UPDATE_DISCONNECTED TRUE
PREFIX ${PREFIX}
CONFIGURE_COMMAND ""
BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS=${GSLIB_FLAGS}"
BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS= ${GSLIB_C_FLAGS}"
INSTALL_COMMAND "")
file(MAKE_DIRECTORY ${PREFIX}/include)
# set imported library target properties
+1 -3
View File
@@ -44,9 +44,6 @@ if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
# set options and associated dependencies
set(HYPRE_CMAKE_OPTIONS "")
list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
if (BUILD_SHARED_LIBS)
list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON)
endif()
# collect all HYPRE_ENABLE variables and pass them to hypre, assuming they are BOOL.
get_cmake_property(all_vars VARIABLES)
foreach(var ${all_vars})
@@ -98,6 +95,7 @@ if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
UPDATE_DISCONNECTED TRUE
SOURCE_SUBDIR src
PREFIX ${HYPRE_INSTALL}
BUILD_COMMAND ${CMAKE_COMMAND} --build . -- -j${CMAKE_BUILD_PARALLEL_LEVEL}
CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${HYPRE_INSTALL} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${HYPRE_CMAKE_OPTIONS})
file(MAKE_DIRECTORY ${HYPRE_INSTALL}/include)
# set imported library target properties
+2 -10
View File
@@ -19,18 +19,10 @@
# - METIS_VERSION_5 (cache variable)
if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
enable_language(C)
set(METIS_FETCH_VERSION 4.0.3)
add_library(METIS STATIC IMPORTED)
# set options (technically flags because METIS does not use cmake)
set(METIS_FLAGS "-Wno-implicit-int -Wno-incompatible-pointer-types")
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
set(METIS_FLAGS "${METIS_FLAGS} ${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
if (BUILD_SHARED_LIBS)
set(METIS_FLAGS "${METIS_FLAGS} -fPIC")
endif()
# define external project
message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with ${METIS_FLAGS}")
message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with default options")
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/metis)
include(ExternalProject)
ExternalProject_Add(metis
@@ -40,7 +32,7 @@ if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
UPDATE_DISCONNECTED TRUE
PREFIX ${PREFIX}
CONFIGURE_COMMAND tar -xzf ../metis/metis-${METIS_FETCH_VERSION}-mac.tgz --strip=1
BUILD_COMMAND $(MAKE) clean && $(MAKE) "OPTFLAGS=${METIS_FLAGS}"
BUILD_COMMAND $(MAKE) COPTIONS=-Wno-incompatible-pointer-types
INSTALL_COMMAND mkdir -p ${PREFIX}/lib && cp libmetis.a ${PREFIX}/lib/)
# set imported library target properties
add_dependencies(METIS metis)
+9 -9
View File
@@ -22,15 +22,15 @@ include(MfemCmakeUtilities)
mfem_find_package(SuiteSparse SuiteSparse SuiteSparse_DIR "" "" "" ""
"Paths to headers required by SuiteSparse."
"Libraries required by SuiteSparse."
ADD_COMPONENT "UMFPACK" "include;include/suitesparse;suitesparse" umfpack.h "lib" umfpack
ADD_COMPONENT "KLU" "include;include/suitesparse;suitesparse" klu.h "lib" klu
ADD_COMPONENT "AMD" "include;include/suitesparse;suitesparse" amd.h "lib" amd
ADD_COMPONENT "BTF" "include;include/suitesparse;suitesparse" btf.h "lib" btf
ADD_COMPONENT "CHOLMOD" "include;include/suitesparse;suitesparse" cholmod.h "lib" cholmod
ADD_COMPONENT "COLAMD" "include;include/suitesparse;suitesparse" colamd.h "lib" colamd
ADD_COMPONENT "CAMD" "include;include/suitesparse;suitesparse" camd.h "lib" camd
ADD_COMPONENT "CCOLAMD" "include;include/suitesparse;suitesparse" ccolamd.h "lib" ccolamd
ADD_COMPONENT "config" "include;include/suitesparse;suitesparse" SuiteSparse_config.h "lib"
ADD_COMPONENT "UMFPACK" "include;suitesparse" umfpack.h "lib" umfpack
ADD_COMPONENT "KLU" "include;suitesparse" klu.h "lib" klu
ADD_COMPONENT "AMD" "include;suitesparse" amd.h "lib" amd
ADD_COMPONENT "BTF" "include;suitesparse" btf.h "lib" btf
ADD_COMPONENT "CHOLMOD" "include;suitesparse" cholmod.h "lib" cholmod
ADD_COMPONENT "COLAMD" "include;suitesparse" colamd.h "lib" colamd
ADD_COMPONENT "CAMD" "include;suitesparse" camd.h "lib" camd
ADD_COMPONENT "CCOLAMD" "include;suitesparse" ccolamd.h "lib" ccolamd
ADD_COMPONENT "config" "include;suitesparse" SuiteSparse_config.h "lib"
suitesparseconfig)
if (SuiteSparse_FOUND AND METIS_VERSION_5)
-6
View File
@@ -157,10 +157,4 @@ constexpr real_t operator""_r(unsigned long long v)
#endif
#endif // MFEM_USE_MPI not defined
#ifndef MFEM_USE_CUDA
#ifdef MFEM_USE_CUDSS
#error Building with cuDSS (MFEM_USE_CUDSS=YES) requires CUDA (MFEM_USE_CUDA=YES)
#endif
#endif // MFEM_USE_CUDSS not defined
#endif // MFEM_CONFIG_HPP
-9
View File
@@ -108,15 +108,6 @@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
// Enable MFEM functionality based on the cuDSS library.
// #define MFEM_USE_CUDSS
// CUDSS communication layer library path
// #define MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
// CUDSS threading layer library path
// #define MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
// Enable MFEM features based on the Ginkgo library.
// #define MFEM_USE_GINKGO
-3
View File
@@ -36,9 +36,6 @@ MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
MFEM_USE_CUDSS = @MFEM_USE_CUDSS@
MFEM_CUDSS_COMM_LIB = @MFEM_CUDSS_COMM_LIB@
MFEM_CUDSS_THREADING_LIB = @MFEM_CUDSS_THREADING_LIB@
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
MFEM_USE_AMGX = @MFEM_USE_AMGX@
MFEM_USE_MAGMA = @MFEM_USE_MAGMA@
-1
View File
@@ -38,7 +38,6 @@ option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
option(MFEM_USE_CUDSS "Enable cuDSS usage" OFF)
option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
option(MFEM_USE_MAGMA "Enable MAGMA usage" OFF)
+4 -49
View File
@@ -27,10 +27,7 @@ MPICXX = mpicxx
BASE_FLAGS = -std=c++17
OPTIM_FLAGS = -O3 $(BASE_FLAGS)
# The variable WARNING_FLAGS depends on which compiler is used, and is defined
# later in this file.
DEBUG_FLAGS = $(strip -g $(addprefix $(XCOMPILER),$(WARNING_FLAGS)) $(BASE_FLAGS))
DEBUG_FLAGS = -g $(XCOMPILER)-Wall $(BASE_FLAGS)
# Prefixes for passing flags to the compiler and linker when using CXX or MPICXX
CXX_XCOMPILER =
@@ -49,10 +46,6 @@ SHARED = NO
#
# If you set MFEM_USE_ENZYME=YES, must use CUDA_CXX=clang++
CUDA_CXX = nvcc
# CUDA compute capability used during compilation, e.g. sm_60. Multiple
# architectures can be requested as a comma-separated list, e.g. sm_70,sm_80.
# A single value may also be one of the nvcc special values "all",
# "all-major", or "native".
CUDA_ARCH = sm_60
# Base CUDA install directory, only needed if building with clang+cuda:
# The default setting is:
@@ -61,23 +54,11 @@ CUDA_ARCH = sm_60
# 3. Use /usr/local/cuda
CUDA_DIR = $(or $(CUDA_HOME),$(patsubst %/,%,$(dir \
$(patsubst %/,%,$(dir $(shell command -v nvcc))))),/usr/local/cuda)
# Derive nvcc/clang architecture flags from CUDA_ARCH. A comma-separated list
# expands into one -gencode / --cuda-gpu-arch flag per architecture; otherwise
# use the -arch / --cuda-gpu-arch shorthand.
MFEM_COMMA := ,
CUDA_ARCH_NUMS = $(patsubst sm_%,%,$(subst $(MFEM_COMMA), ,$(CUDA_ARCH)))
NVCC_ARCH_FLAGS = $(strip $(if $(findstring $(MFEM_COMMA),$(CUDA_ARCH)),\
$(foreach arch,$(CUDA_ARCH_NUMS),\
-gencode arch=compute_$(arch)$(MFEM_COMMA)code=sm_$(arch)),\
-arch=$(CUDA_ARCH)))
CLANG_ARCH_FLAGS = $(strip $(if $(findstring $(MFEM_COMMA),$(CUDA_ARCH)),\
$(foreach arch,$(CUDA_ARCH_NUMS),--cuda-gpu-arch=sm_$(arch)),\
--cuda-gpu-arch=$(CUDA_ARCH)))
# flags for clang+cuda
CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) $(CLANG_ARCH_FLAGS)
CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) --cuda-gpu-arch=$(CUDA_ARCH)
# flags for nvcc
NVCC_FLAGS = -x=cu --expt-extended-lambda --expt-relaxed-constexpr \
$(NVCC_ARCH_FLAGS) -isystem "$(CUDA_DIR)/include"
-arch=$(CUDA_ARCH) -isystem "$(CUDA_DIR)/include"
# Prefixes for passing flags to the host compiler and linker when using
# CUDA_CXX=nvcc
CUDA_XCOMPILER = -Xcompiler=
@@ -172,7 +153,6 @@ MFEM_USE_SUPERLU = NO
MFEM_USE_SUPERLU5 = NO
MFEM_USE_MUMPS = NO
MFEM_USE_STRUMPACK = NO
MFEM_USE_CUDSS = NO
MFEM_USE_GINKGO = NO
MFEM_USE_AMGX = NO
MFEM_USE_MAGMA = NO
@@ -388,19 +368,6 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
$(SCOTCH_LIB) $(SCALAPACK_LIB)
# CUDSS library configuration
CUDSS_DIR = @MFEM_DIR@/../cudss
CUDSS_INCLUDE_DIR = $(CUDSS_DIR)/include
CUDSS_LIBRARY_DIR = $(CUDSS_DIR)/lib
CUDSS_OPT = -I$(CUDSS_INCLUDE_DIR)
CUDSS_LIB = \
$(XLINKER)-rpath,$(CUDSS_LIBRARY_DIR) -L$(CUDSS_LIBRARY_DIR) -lcudss
# The cuDSS communication and threading libraries.
MFEM_CUDSS_COMM_LIB = $(abspath $(wildcard $(or $(CUDSS_COMM_LIB),\
$(subst @MFEM_DIR@,$(MFEM_DIR), $(CUDSS_LIBRARY_DIR)/libcudss_commlayer_openmpi.so))))
MFEM_CUDSS_THREADING_LIB = $(abspath $(wildcard $(or $(CUDSS_THREADING_LIB),\
$(subst @MFEM_DIR@,$(MFEM_DIR),$(CUDSS_LIBRARY_DIR)/libcudss_mtlayer_gomp.so))))
# Ginkgo library configuration
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
@@ -654,7 +621,7 @@ PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
AXOM_DIR = @MFEM_DIR@/../axom
TRIBOL_DIR = @MFEM_DIR@/../tribol
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -ltribol_shared -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
-laxom_slam -laxom_slic -laxom_core
# Enzyme configuration
@@ -678,15 +645,3 @@ VERBOSE = NO
# Optional build tag
MFEM_BUILD_TAG = $(shell uname -snm)
# Enable -pedantic flag only for gcc or clang. nvcc complains with -pedantic
# because of line directives.
PEDANTIC_FLAG = $(if \
$(findstring NVIDIA,$(shell $(MFEM_CXX) --version 2>&1)),, \
$(if $(or \
$(findstring gcc version,$(shell $(MFEM_CXX) -v 2>&1)), \
$(findstring clang version,$(shell $(MFEM_CXX) -v 2>&1))),-pedantic,))
# Enable shadow warnings for clang only; GCC's -Wshadow flags more.
SHADOW_WARNING_FLAG = $(if $(findstring clang,\
$(shell $(MFEM_HOST_CXX) --version 2>/dev/null)),-Wshadow,)
WARNING_FLAGS = $(PEDANTIC_FLAG) -Wall $(SHADOW_WARNING_FLAG)
-5
View File
@@ -39,8 +39,3 @@ when a picture was added for documentation.
If that is the case, make sure the failure is indeed justified, and rerun the
push command with the `--no-verify` option. This will skip the hooks, allowing
you to push those changes.
The `branch-history` check is run automatically through GitHub Actions. If a
branch is known to have a large number of changes that are legitimate, the
check can be overridden by setting the label 'branch-history-override' on the
pull request.
-131
View File
@@ -1,131 +0,0 @@
// Define the cube sizes
L_outer = 1.0;
L_inner = 0.5;
// Set mesh size and algorithm
mesh_size = 0.4;
Mesh.Algorithm3D = 1; // Delaunay algorithm for 3D mesh
Mesh.CharacteristicLengthFactor = 1.0;
Mesh.MshFileVersion = 2.2;
// Define center point for concentric cubes
cx = 0.5;
cy = 0.5;
cz = 0.5;
// Define the points (vertices of the outer cube)
Point(1) = {cx-L_outer/2, cy-L_outer/2, cz-L_outer/2, mesh_size};
Point(2) = {cx+L_outer/2, cy-L_outer/2, cz-L_outer/2, mesh_size};
Point(3) = {cx+L_outer/2, cy+L_outer/2, cz-L_outer/2, mesh_size};
Point(4) = {cx-L_outer/2, cy+L_outer/2, cz-L_outer/2, mesh_size};
Point(5) = {cx-L_outer/2, cy-L_outer/2, cz+L_outer/2, mesh_size};
Point(6) = {cx+L_outer/2, cy-L_outer/2, cz+L_outer/2, mesh_size};
Point(7) = {cx+L_outer/2, cy+L_outer/2, cz+L_outer/2, mesh_size};
Point(8) = {cx-L_outer/2, cy+L_outer/2, cz+L_outer/2, mesh_size};
// Define the points (vertices of the inner cube)
Point(9) = {cx-L_inner/2, cy-L_inner/2, cz-L_inner/2, mesh_size};
Point(10) = {cx+L_inner/2, cy-L_inner/2, cz-L_inner/2, mesh_size};
Point(11) = {cx+L_inner/2, cy+L_inner/2, cz-L_inner/2, mesh_size};
Point(12) = {cx-L_inner/2, cy+L_inner/2, cz-L_inner/2, mesh_size};
Point(13) = {cx-L_inner/2, cy-L_inner/2, cz+L_inner/2, mesh_size};
Point(14) = {cx+L_inner/2, cy-L_inner/2, cz+L_inner/2, mesh_size};
Point(15) = {cx+L_inner/2, cy+L_inner/2, cz+L_inner/2, mesh_size};
Point(16) = {cx-L_inner/2, cy+L_inner/2, cz+L_inner/2, mesh_size};
// Define the lines (edges of the outer cube)
Line(1) = {1, 2};
Line(2) = {2, 3};
Line(3) = {3, 4};
Line(4) = {4, 1};
Line(5) = {5, 6};
Line(6) = {6, 7};
Line(7) = {7, 8};
Line(8) = {8, 5};
Line(9) = {1, 5};
Line(10) = {2, 6};
Line(11) = {3, 7};
Line(12) = {4, 8};
// Define the lines (edges of the inner cube)
Line(13) = {9, 10};
Line(14) = {10, 11};
Line(15) = {11, 12};
Line(16) = {12, 9};
Line(17) = {13, 14};
Line(18) = {14, 15};
Line(19) = {15, 16};
Line(20) = {16, 13};
Line(21) = {9, 13};
Line(22) = {10, 14};
Line(23) = {11, 15};
Line(24) = {12, 16};
// Define the surfaces (faces of the outer cube)
Line Loop(1) = {1, 2, 3, 4};
Plane Surface(1) = {1};
Line Loop(2) = {5, 6, 7, 8};
Plane Surface(2) = {2};
Line Loop(3) = {9, 5, -10, -1};
Plane Surface(3) = {3};
Line Loop(4) = {10, 6, -11, -2};
Plane Surface(4) = {4};
Line Loop(5) = {11, 7, -12, -3};
Plane Surface(5) = {5};
Line Loop(6) = {12, 8, -9, -4};
Plane Surface(6) = {6};
// Define the surfaces (faces of the inner cube)
Line Loop(7) = {13, 14, 15, 16};
Plane Surface(7) = {7};
Line Loop(8) = {17, 18, 19, 20};
Plane Surface(8) = {8};
Line Loop(9) = {21, 17, -22, -13};
Plane Surface(9) = {9};
Line Loop(10) = {22, 18, -23, -14};
Plane Surface(10) = {10};
Line Loop(11) = {23, 19, -24, -15};
Plane Surface(11) = {11};
Line Loop(12) = {24, 20, -21, -16};
Plane Surface(12) = {12};
// Define the volumes
Surface Loop(1) = {1, 2, 3, 4, 5, 6};
Surface Loop(2) = {7, 8, 9, 10, 11, 12};
Volume(1) = {1, 2}; // Outer volume with inner hole
Volume(2) = {2}; // Inner volume
// Assign physical groups
Physical Volume(1) = {1}; // Outer volume
Physical Volume(2) = {2}; // Inner volume
// Outer cube surfaces
Physical Surface(1) = {1}; // Outer bottom
Physical Surface(2) = {2}; // Outer top
Physical Surface(3) = {3}; // Outer front
Physical Surface(4) = {4}; // Outer right
Physical Surface(5) = {5}; // Outer back
Physical Surface(6) = {6}; // Outer left
// Inner cube surfaces
Physical Surface(7) = {7}; // Inner bottom (-xy)
Physical Surface(8) = {8}; // Inner top (+xy)
Physical Surface(9) = {9}; // Inner front (-xz)
Physical Surface(10) = {10}; // Inner right (+yz)
Physical Surface(11) = {11}; // Inner back (+xz)
Physical Surface(12) = {12}; // Inner left (-yz)
// Mesh control
Mesh.OptimizeNetgen = 1;
Mesh.Optimize = 1;
Mesh.ElementOrder = 1;
-907
View File
@@ -1,907 +0,0 @@
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45 2 2 2 2 31 62 65
46 2 2 2 2 62 32 67
47 2 2 2 2 62 61 63
48 2 2 2 2 61 62 64
49 2 2 2 2 63 61 68
50 2 2 2 2 61 64 66
51 2 2 2 2 62 63 65
52 2 2 2 2 64 62 67
53 2 2 3 3 17 1 76
54 2 2 3 3 1 33 76
55 2 2 3 3 2 18 75
56 2 2 3 3 35 2 75
57 2 2 3 3 5 25 74
58 2 2 3 3 34 5 74
59 2 2 3 3 26 6 73
60 2 2 3 3 6 36 73
61 2 2 3 3 18 17 69
62 2 2 3 3 69 17 76
63 2 2 3 3 18 69 75
64 2 2 3 3 25 26 70
65 2 2 3 3 25 70 74
66 2 2 3 3 70 26 73
67 2 2 3 3 33 34 72
68 2 2 3 3 33 72 76
69 2 2 3 3 72 34 74
70 2 2 3 3 36 35 71
71 2 2 3 3 71 35 75
72 2 2 3 3 36 71 73
73 2 2 3 3 69 70 71
74 2 2 3 3 70 69 72
75 2 2 3 3 69 71 75
76 2 2 3 3 72 69 76
77 2 2 3 3 71 70 73
78 2 2 3 3 70 72 74
79 2 2 4 4 19 2 84
80 2 2 4 4 2 35 84
81 2 2 4 4 3 20 83
82 2 2 4 4 37 3 83
83 2 2 4 4 6 27 82
84 2 2 4 4 36 6 82
85 2 2 4 4 28 7 81
86 2 2 4 4 7 38 81
87 2 2 4 4 20 19 77
88 2 2 4 4 77 19 84
89 2 2 4 4 20 77 83
90 2 2 4 4 27 28 78
91 2 2 4 4 27 78 82
92 2 2 4 4 78 28 81
93 2 2 4 4 35 36 80
94 2 2 4 4 35 80 84
95 2 2 4 4 80 36 82
96 2 2 4 4 38 37 79
97 2 2 4 4 79 37 83
98 2 2 4 4 38 79 81
99 2 2 4 4 77 78 79
100 2 2 4 4 78 77 80
101 2 2 4 4 77 79 83
102 2 2 4 4 80 77 84
103 2 2 4 4 79 78 81
104 2 2 4 4 78 80 82
105 2 2 5 5 21 3 90
106 2 2 5 5 3 37 90
107 2 2 5 5 4 22 91
108 2 2 5 5 39 4 91
109 2 2 5 5 7 29 92
110 2 2 5 5 38 7 92
111 2 2 5 5 30 8 89
112 2 2 5 5 8 40 89
113 2 2 5 5 22 21 85
114 2 2 5 5 85 21 90
115 2 2 5 5 22 85 91
116 2 2 5 5 29 30 86
117 2 2 5 5 29 86 92
118 2 2 5 5 86 30 89
119 2 2 5 5 37 38 88
120 2 2 5 5 37 88 90
121 2 2 5 5 88 38 92
122 2 2 5 5 40 39 87
123 2 2 5 5 87 39 91
124 2 2 5 5 40 87 89
125 2 2 5 5 85 86 87
126 2 2 5 5 86 85 88
127 2 2 5 5 85 87 91
128 2 2 5 5 88 85 90
129 2 2 5 5 87 86 89
130 2 2 5 5 86 88 92
131 2 2 6 6 1 24 99
132 2 2 6 6 33 1 99
133 2 2 6 6 23 4 98
134 2 2 6 6 4 39 98
135 2 2 6 6 32 5 97
136 2 2 6 6 5 34 97
137 2 2 6 6 8 31 100
138 2 2 6 6 40 8 100
139 2 2 6 6 24 23 93
140 2 2 6 6 93 23 98
141 2 2 6 6 24 93 99
142 2 2 6 6 31 32 94
143 2 2 6 6 31 94 100
144 2 2 6 6 94 32 97
145 2 2 6 6 34 33 95
146 2 2 6 6 95 33 99
147 2 2 6 6 34 95 97
148 2 2 6 6 39 40 96
149 2 2 6 6 39 96 98
150 2 2 6 6 96 40 100
151 2 2 6 6 93 94 95
152 2 2 6 6 94 93 96
153 2 2 6 6 93 95 99
154 2 2 6 6 96 93 98
155 2 2 6 6 95 94 97
156 2 2 6 6 94 96 100
157 2 2 7 7 9 41 102
158 2 2 7 7 44 9 102
159 2 2 7 7 41 10 104
160 2 2 7 7 10 42 104
161 2 2 7 7 42 11 103
162 2 2 7 7 11 43 103
163 2 2 7 7 43 12 101
164 2 2 7 7 12 44 101
165 2 2 7 7 102 41 104
166 2 2 7 7 42 103 104
167 2 2 7 7 43 101 103
168 2 2 7 7 101 44 102
169 2 2 7 7 101 102 103
170 2 2 7 7 103 102 104
171 2 2 8 8 13 45 106
172 2 2 8 8 48 13 106
173 2 2 8 8 45 14 108
174 2 2 8 8 14 46 108
175 2 2 8 8 46 15 107
176 2 2 8 8 15 47 107
177 2 2 8 8 47 16 105
178 2 2 8 8 16 48 105
179 2 2 8 8 106 45 108
180 2 2 8 8 46 107 108
181 2 2 8 8 47 105 107
182 2 2 8 8 105 48 106
183 2 2 8 8 105 106 107
184 2 2 8 8 107 106 108
185 2 2 9 9 41 9 109
186 2 2 9 9 9 49 109
187 2 2 9 9 10 41 110
188 2 2 9 9 50 10 110
189 2 2 9 9 13 45 111
190 2 2 9 9 49 13 111
191 2 2 9 9 45 14 112
192 2 2 9 9 14 50 112
193 2 2 9 9 41 109 110
194 2 2 9 9 111 45 112
195 2 2 9 9 109 49 111
196 2 2 9 9 50 110 112
197 2 2 9 9 110 109 111
198 2 2 9 9 110 111 112
199 2 2 10 10 42 10 113
200 2 2 10 10 10 50 113
201 2 2 10 10 11 42 114
202 2 2 10 10 51 11 114
203 2 2 10 10 14 46 115
204 2 2 10 10 50 14 115
205 2 2 10 10 46 15 116
206 2 2 10 10 15 51 116
207 2 2 10 10 42 113 114
208 2 2 10 10 115 46 116
209 2 2 10 10 113 50 115
210 2 2 10 10 51 114 116
211 2 2 10 10 114 113 115
212 2 2 10 10 114 115 116
213 2 2 11 11 43 11 119
214 2 2 11 11 11 51 119
215 2 2 11 11 12 43 117
216 2 2 11 11 52 12 117
217 2 2 11 11 15 47 120
218 2 2 11 11 51 15 120
219 2 2 11 11 47 16 118
220 2 2 11 11 16 52 118
221 2 2 11 11 117 43 119
222 2 2 11 11 47 118 120
223 2 2 11 11 119 51 120
224 2 2 11 11 52 117 118
225 2 2 11 11 118 117 119
226 2 2 11 11 118 119 120
227 2 2 12 12 9 44 121
228 2 2 12 12 49 9 121
229 2 2 12 12 44 12 123
230 2 2 12 12 12 52 123
231 2 2 12 12 48 13 122
232 2 2 12 12 13 49 122
233 2 2 12 12 16 48 124
234 2 2 12 12 52 16 124
235 2 2 12 12 121 44 123
236 2 2 12 12 48 122 124
237 2 2 12 12 49 121 122
238 2 2 12 12 123 52 124
239 2 2 12 12 122 121 123
240 2 2 12 12 122 123 124
241 4 2 1 1 105 62 106 107
242 4 2 1 1 102 54 101 103
243 4 2 1 1 118 86 120 119
244 4 2 1 1 124 94 123 122
245 4 2 1 1 52 39 12 96
246 4 2 1 1 52 12 39 87
247 4 2 1 1 88 38 15 51
248 4 2 1 1 79 15 38 51
249 4 2 1 1 80 14 50 36
250 4 2 1 1 71 50 14 36
251 4 2 1 1 120 88 15 51
252 4 2 1 1 116 15 79 51
253 4 2 1 1 50 14 112 71
254 4 2 1 1 52 117 12 87
255 4 2 1 1 111 69 109 110
256 4 2 1 1 114 77 115 113
257 4 2 1 1 124 123 94 96
258 4 2 1 1 120 86 88 119
259 4 2 1 1 14 45 64 108
260 4 2 1 1 103 54 101 55
261 4 2 1 1 62 105 63 107
262 4 2 1 1 63 29 15 47
263 4 2 1 1 14 45 26 64
264 4 2 1 1 51 11 88 37
265 4 2 1 1 80 50 10 35
266 4 2 1 1 49 33 9 72
267 4 2 1 1 71 10 50 35
268 4 2 1 1 79 11 51 37
269 4 2 1 1 49 9 33 95
270 4 2 1 1 12 123 52 96
271 4 2 1 1 96 16 52 40
272 4 2 1 1 49 13 34 72
273 4 2 1 1 87 52 16 40
274 4 2 1 1 13 49 34 95
275 4 2 1 1 43 101 12 55
276 4 2 1 1 43 12 22 55
277 4 2 1 1 106 61 108 107
278 4 2 1 1 102 103 104 53
279 4 2 1 1 50 115 14 80
280 4 2 1 1 80 10 50 113
281 4 2 1 1 9 109 49 72
282 4 2 1 1 47 15 63 107
283 4 2 1 1 124 16 52 96
284 4 2 1 1 49 121 9 95
285 4 2 1 1 15 28 68 46
286 4 2 1 1 81 28 15 46
287 4 2 1 1 92 15 29 47
288 4 2 1 1 27 82 14 46
289 4 2 1 1 14 66 27 46
290 4 2 1 1 26 45 14 73
291 4 2 1 1 78 115 116 114
292 4 2 1 1 112 70 111 110
293 4 2 1 1 79 11 114 51
294 4 2 1 1 71 50 10 110
295 4 2 1 1 10 41 104 56
296 4 2 1 1 77 80 115 113
297 4 2 1 1 69 109 72 111
298 4 2 1 1 63 16 30 47
299 4 2 1 1 25 45 13 64
300 4 2 1 1 52 16 118 87
301 4 2 1 1 95 13 49 122
302 4 2 1 1 57 12 23 44
303 4 2 1 1 119 11 88 51
304 4 2 1 1 41 17 9 56
305 4 2 1 1 18 41 10 56
306 4 2 1 1 21 11 43 55
307 4 2 1 1 63 105 16 47
308 4 2 1 1 13 45 106 64
309 4 2 1 1 9 102 41 56
310 4 2 1 1 72 49 13 111
311 4 2 1 1 11 103 43 55
312 4 2 1 1 70 112 71 110
313 4 2 1 1 116 79 78 114
314 4 2 1 1 32 13 48 67
315 4 2 1 1 16 89 30 47
316 4 2 1 1 32 48 13 97
317 4 2 1 1 48 16 100 31
318 4 2 1 1 121 123 93 122
319 4 2 1 1 119 117 118 85
320 4 2 1 1 10 19 42 84
321 4 2 1 1 17 9 76 41
322 4 2 1 1 24 9 59 44
323 4 2 1 1 42 19 10 58
324 4 2 1 1 10 41 18 75
325 4 2 1 1 20 83 11 42
326 4 2 1 1 90 11 43 21
327 4 2 1 1 53 104 102 56
328 4 2 1 1 106 61 64 108
329 4 2 1 1 87 118 117 85
330 4 2 1 1 95 121 93 122
331 4 2 1 1 80 50 115 113
332 4 2 1 1 109 49 72 111
333 4 2 1 1 78 27 28 46
334 4 2 1 1 31 94 48 32
335 4 2 1 1 19 77 20 42
336 4 2 1 1 23 24 44 93
337 4 2 1 1 123 124 52 96
338 4 2 1 1 88 120 119 51
339 4 2 1 1 91 43 85 117
340 4 2 1 1 39 98 12 96
341 4 2 1 1 12 91 39 87
342 4 2 1 1 15 92 38 88
343 4 2 1 1 38 81 15 79
344 4 2 1 1 36 80 14 82
345 4 2 1 1 14 71 36 73
346 4 2 1 1 103 102 54 53
347 4 2 1 1 61 106 62 107
348 4 2 1 1 86 29 30 47
349 4 2 1 1 26 45 70 25
350 4 2 1 1 21 85 22 43
351 4 2 1 1 94 93 123 122
352 4 2 1 1 119 118 86 85
353 4 2 1 1 12 96 93 123
354 4 2 1 1 115 78 77 114
355 4 2 1 1 69 111 70 110
356 4 2 1 1 28 27 61 46
357 4 2 1 1 48 62 31 32
358 4 2 1 1 88 15 92 120
359 4 2 1 1 79 81 15 116
360 4 2 1 1 71 14 112 73
361 4 2 1 1 114 116 79 51
362 4 2 1 1 112 50 71 110
363 4 2 1 1 91 12 117 87
364 4 2 1 1 80 115 14 82
365 4 2 1 1 63 15 29 68
366 4 2 1 1 64 26 14 66
367 4 2 1 1 47 63 105 107
368 4 2 1 1 43 103 101 55
369 4 2 1 1 35 10 80 84
370 4 2 1 1 33 76 9 72
371 4 2 1 1 37 11 88 90
372 4 2 1 1 35 71 10 75
373 4 2 1 1 37 79 11 83
374 4 2 1 1 9 99 33 95
375 4 2 1 1 68 63 15 107
376 4 2 1 1 99 44 93 121
377 4 2 1 1 18 69 41 17
378 4 2 1 1 10 35 2 84
379 4 2 1 1 15 7 28 81
380 4 2 1 1 3 37 90 11
381 4 2 1 1 108 64 14 66
382 4 2 1 1 51 38 79 37
383 4 2 1 1 12 4 23 98
384 4 2 1 1 12 39 91 4
385 4 2 1 1 49 33 72 34
386 4 2 1 1 10 71 110 75
387 4 2 1 1 114 11 79 83
388 4 2 1 1 40 96 16 100
389 4 2 1 1 34 13 74 72
390 4 2 1 1 16 87 40 89
391 4 2 1 1 34 97 13 95
392 4 2 1 1 20 19 42 53
393 4 2 1 1 54 23 24 44
394 4 2 1 1 87 16 118 89
395 4 2 1 1 95 97 13 122
396 4 2 1 1 57 22 12 55
397 4 2 1 1 41 102 104 56
398 4 2 1 1 64 45 106 108
399 4 2 1 1 101 57 12 55
400 4 2 1 1 74 13 5 25
401 4 2 1 1 13 34 74 5
402 4 2 1 1 8 40 16 100
403 4 2 1 1 16 31 65 8
404 4 2 1 1 82 36 6 14
405 4 2 1 1 102 9 59 56
406 4 2 1 1 106 67 13 64
407 4 2 1 1 119 88 11 90
408 4 2 1 1 95 49 121 122
409 4 2 1 1 52 118 117 87
410 4 2 1 1 124 16 96 100
411 4 2 1 1 80 10 113 84
412 4 2 1 1 109 9 76 72
413 4 2 1 1 72 13 70 111
414 4 2 1 1 99 9 121 95
415 4 2 1 1 30 65 16 63
416 4 2 1 1 13 67 25 64
417 4 2 1 1 11 55 53 103
418 4 2 1 1 123 12 44 93
419 4 2 1 1 56 104 10 58
420 4 2 1 1 10 18 56 58
421 4 2 1 1 21 60 11 55
422 4 2 1 1 17 59 9 56
423 4 2 1 1 16 63 62 105
424 4 2 1 1 48 105 16 62
425 4 2 1 1 111 45 13 70
426 4 2 1 1 119 86 88 85
427 4 2 1 1 123 93 94 96
428 4 2 1 1 115 78 80 77
429 4 2 1 1 111 72 69 70
430 4 2 1 1 55 103 54 53
431 4 2 1 1 63 61 62 107
432 4 2 1 1 14 27 66 6
433 4 2 1 1 99 9 1 24
434 4 2 1 1 49 33 34 95
435 4 2 1 1 96 52 39 40
436 4 2 1 1 22 12 91 4
437 4 2 1 1 20 11 83 3
438 4 2 1 1 29 15 92 7
439 4 2 1 1 18 10 75 2
440 4 2 1 1 36 50 80 35
441 4 2 1 1 18 17 41 56
442 4 2 1 1 51 88 38 37
443 4 2 1 1 62 31 16 48
444 4 2 1 1 62 16 31 65
445 4 2 1 1 26 45 25 64
446 4 2 1 1 104 58 42 10
447 4 2 1 1 29 63 30 47
448 4 2 1 1 77 78 79 114
449 4 2 1 1 71 69 70 110
450 4 2 1 1 42 103 11 53
451 4 2 1 1 93 94 95 122
452 4 2 1 1 118 87 86 85
453 4 2 1 1 61 62 106 64
454 4 2 1 1 53 102 54 56
455 4 2 1 1 78 82 27 46
456 4 2 1 1 94 48 32 97
457 4 2 1 1 86 30 89 47
458 4 2 1 1 78 28 81 46
459 4 2 1 1 26 70 45 73
460 4 2 1 1 100 94 48 31
461 4 2 1 1 86 92 29 47
462 4 2 1 1 76 69 17 41
463 4 2 1 1 42 19 77 84
464 4 2 1 1 77 83 20 42
465 4 2 1 1 18 41 69 75
466 4 2 1 1 43 85 90 21
467 4 2 1 1 91 43 117 12
468 4 2 1 1 48 62 32 67
469 4 2 1 1 27 66 61 46
470 4 2 1 1 68 28 61 46
471 4 2 1 1 54 24 59 44
472 4 2 1 1 19 42 53 58
473 4 2 1 1 23 54 57 44
474 4 2 1 1 12 93 96 98
475 4 2 1 1 99 44 121 9
476 4 2 1 1 42 58 104 53
477 4 2 1 1 21 43 22 55
478 4 2 1 1 53 20 11 42
479 4 2 1 1 53 11 20 60
480 4 2 1 1 106 67 48 13
481 4 2 1 1 36 71 50 35
482 4 2 1 1 52 87 39 40
483 4 2 1 1 48 67 106 62
484 4 2 1 1 72 70 13 74
485 4 2 1 1 9 33 99 1
486 4 2 1 1 3 37 11 83
487 4 2 1 1 13 34 5 97
488 4 2 1 1 12 39 4 98
489 4 2 1 1 14 36 6 73
490 4 2 1 1 15 38 92 7
491 4 2 1 1 8 40 89 16
492 4 2 1 1 75 35 2 10
493 4 2 1 1 30 16 65 8
494 4 2 1 1 14 27 6 82
495 4 2 1 1 26 14 66 6
496 4 2 1 1 16 31 8 100
497 4 2 1 1 32 13 67 5
498 4 2 1 1 13 67 5 25
499 4 2 1 1 68 7 28 15
500 4 2 1 1 29 15 7 68
501 4 2 1 1 57 4 23 12
502 4 2 1 1 22 12 4 57
503 4 2 1 1 10 19 84 2
504 4 2 1 1 9 59 1 24
505 4 2 1 1 17 9 59 1
506 4 2 1 1 18 10 2 58
507 4 2 1 1 11 21 90 3
508 4 2 1 1 20 11 3 60
509 4 2 1 1 16 62 63 65
510 4 2 1 1 11 53 55 60
511 4 2 1 1 78 81 79 116
512 4 2 1 1 71 112 70 73
513 4 2 1 1 86 88 92 120
514 4 2 1 1 96 94 124 100
515 4 2 1 1 94 97 95 122
516 4 2 1 1 89 118 87 86
517 4 2 1 1 15 38 7 81
518 4 2 1 1 102 44 59 9
519 4 2 1 1 59 44 102 54
520 4 2 1 1 110 71 69 75
521 4 2 1 1 79 77 114 83
522 4 2 1 1 76 69 109 72
523 4 2 1 1 113 77 80 84
524 4 2 1 1 93 99 121 95
525 4 2 1 1 87 117 91 85
526 4 2 1 1 90 119 43 11
527 4 2 1 1 80 78 115 82
528 4 2 1 1 88 119 85 90
529 4 2 1 1 90 43 119 85
530 4 2 1 1 46 108 66 61
531 4 2 1 1 46 66 108 14
532 4 2 1 1 26 14 6 73
533 4 2 1 1 44 101 57 12
534 4 2 1 1 44 57 101 54
535 4 2 1 1 46 107 68 15
536 4 2 1 1 46 68 107 61
537 4 2 1 1 9 33 1 76
538 4 2 1 1 100 124 48 94
539 4 2 1 1 100 48 124 16
540 4 2 1 1 25 70 13 45
541 4 2 1 1 56 53 104 58
542 4 2 1 1 61 64 108 66
543 4 2 1 1 106 62 67 64
544 4 2 1 1 102 59 54 56
545 4 2 1 1 32 13 5 97
546 4 2 1 1 30 16 8 89
547 4 2 1 1 13 70 25 74
548 4 2 1 1 97 122 48 13
549 4 2 1 1 75 110 41 69
550 4 2 1 1 54 57 101 55
551 4 2 1 1 97 48 122 94
552 4 2 1 1 47 118 89 86
553 4 2 1 1 47 89 118 16
554 4 2 1 1 17 9 1 76
555 4 2 1 1 11 21 3 60
556 4 2 1 1 10 19 2 58
557 4 2 1 1 75 41 110 10
558 4 2 1 1 61 63 68 107
559 4 2 1 1 70 111 45 112
560 4 2 1 1 78 115 46 116
561 4 2 1 1 77 114 42 113
562 4 2 1 1 69 41 109 110
563 4 2 1 1 107 61 108 46
564 4 2 1 1 103 42 104 53
565 4 2 1 1 118 86 47 120
566 4 2 1 1 94 124 48 122
567 4 2 1 1 117 119 43 85
568 4 2 1 1 123 44 121 93
569 4 2 1 1 101 54 102 44
570 4 2 1 1 48 105 62 106
571 4 2 1 1 91 43 12 22
572 4 2 1 1 91 43 22 85
573 4 2 1 1 93 12 23 98
574 4 2 1 1 93 23 12 44
575 4 2 1 1 46 81 116 15
576 4 2 1 1 46 116 81 78
577 4 2 1 1 92 47 120 15
578 4 2 1 1 120 47 92 86
579 4 2 1 1 46 82 115 78
580 4 2 1 1 46 115 82 14
581 4 2 1 1 73 45 112 70
582 4 2 1 1 73 112 45 14
583 4 2 1 1 99 44 9 24
584 4 2 1 1 99 44 24 93
585 4 2 1 1 84 42 113 77
586 4 2 1 1 84 113 42 10
587 4 2 1 1 76 41 109 69
588 4 2 1 1 109 41 76 9
589 4 2 1 1 42 83 114 77
590 4 2 1 1 42 114 83 11
591 4 2 2 2 135 13 122 131
592 4 2 2 2 132 138 125 110
593 4 2 2 2 138 108 125 106
594 4 2 2 2 136 108 125 137
595 4 2 2 2 110 138 125 131
596 4 2 2 2 136 107 134 125
597 4 2 2 2 122 135 131 125
598 4 2 2 2 13 49 122 131
599 4 2 2 2 136 108 137 46
600 4 2 2 2 110 138 131 111
601 4 2 2 2 132 138 110 112
602 4 2 2 2 106 107 108 125
603 4 2 2 2 138 112 137 45
604 4 2 2 2 104 127 125 128
605 4 2 2 2 113 115 114 125
606 4 2 2 2 131 122 125 121
607 4 2 2 2 112 45 14 137
608 4 2 2 2 110 131 125 130
609 4 2 2 2 115 116 114 125
610 4 2 2 2 132 138 112 137
611 4 2 2 2 50 137 115 132
612 4 2 2 2 104 127 128 42
613 4 2 2 2 105 134 125 133
614 4 2 2 2 129 120 51 119
615 4 2 2 2 104 130 128 125
616 4 2 2 2 105 134 133 47
617 4 2 2 2 135 106 138 125
618 4 2 2 2 106 105 107 125
619 4 2 2 2 138 108 106 45
620 4 2 2 2 104 130 125 102
621 4 2 2 2 104 127 42 103
622 4 2 2 2 109 131 49 111
623 4 2 2 2 106 135 48 105
624 4 2 2 2 126 101 43 125
625 4 2 2 2 138 137 125 108
626 4 2 2 2 104 127 103 125
627 4 2 2 2 116 114 129 51
628 4 2 2 2 136 108 46 107
629 4 2 2 2 136 108 107 125
630 4 2 2 2 52 124 123 125
631 4 2 2 2 132 112 110 50
632 4 2 2 2 44 121 125 123
633 4 2 2 2 131 122 121 49
634 4 2 2 2 105 134 47 107
635 4 2 2 2 106 13 135 138
636 4 2 2 2 52 133 125 118
637 4 2 2 2 103 43 101 125
638 4 2 2 2 117 43 119 125
639 4 2 2 2 105 134 107 125
640 4 2 2 2 137 115 132 125
641 4 2 2 2 50 137 132 112
642 4 2 2 2 106 135 105 125
643 4 2 2 2 102 101 44 125
644 4 2 2 2 104 130 102 41
645 4 2 2 2 138 45 13 111
646 4 2 2 2 131 138 135 13
647 4 2 2 2 138 112 45 111
648 4 2 2 2 131 138 13 111
649 4 2 2 2 107 134 15 136
650 4 2 2 2 118 52 117 125
651 4 2 2 2 101 126 12 44
652 4 2 2 2 104 130 41 128
653 4 2 2 2 138 137 108 45
654 4 2 2 2 133 118 16 47
655 4 2 2 2 44 101 126 125
656 4 2 2 2 133 134 118 47
657 4 2 2 2 133 134 125 118
658 4 2 2 2 124 122 123 125
659 4 2 2 2 129 118 119 125
660 4 2 2 2 102 104 103 125
661 4 2 2 2 135 48 13 106
662 4 2 2 2 123 122 121 125
663 4 2 2 2 103 127 43 125
664 4 2 2 2 106 45 13 138
665 4 2 2 2 103 11 127 42
666 4 2 2 2 127 51 129 114
667 4 2 2 2 13 49 131 111
668 4 2 2 2 137 108 14 46
669 4 2 2 2 15 47 134 107
670 4 2 2 2 10 41 128 104
671 4 2 2 2 16 118 133 52
672 4 2 2 2 46 107 15 136
673 4 2 2 2 41 102 9 130
674 4 2 2 2 128 50 132 110
675 4 2 2 2 10 41 110 128
676 4 2 2 2 50 137 112 14
677 4 2 2 2 130 102 9 44
678 4 2 2 2 105 133 16 47
679 4 2 2 2 127 11 103 43
680 4 2 2 2 128 130 41 110
681 4 2 2 2 116 134 15 51
682 4 2 2 2 137 45 14 108
683 4 2 2 2 12 126 101 43
684 4 2 2 2 133 48 135 105
685 4 2 2 2 128 42 10 104
686 4 2 2 2 131 9 109 49
687 4 2 2 2 118 117 119 125
688 4 2 2 2 102 103 101 125
689 4 2 2 2 129 118 125 134
690 4 2 2 2 125 129 116 114
691 4 2 2 2 117 126 43 125
692 4 2 2 2 126 117 12 52
693 4 2 2 2 52 126 117 125
694 4 2 2 2 12 117 126 43
695 4 2 2 2 127 51 114 11
696 4 2 2 2 114 129 127 125
697 4 2 2 2 127 119 43 125
698 4 2 2 2 119 11 127 43
699 4 2 2 2 127 113 114 125
700 4 2 2 2 127 113 42 114
701 4 2 2 2 128 130 110 125
702 4 2 2 2 15 47 120 134
703 4 2 2 2 127 11 114 42
704 4 2 2 2 120 47 118 134
705 4 2 2 2 44 130 102 125
706 4 2 2 2 44 126 12 123
707 4 2 2 2 123 44 126 125
708 4 2 2 2 129 118 134 120
709 4 2 2 2 110 132 128 125
710 4 2 2 2 128 127 125 113
711 4 2 2 2 128 127 113 42
712 4 2 2 2 128 50 110 10
713 4 2 2 2 113 42 10 128
714 4 2 2 2 129 134 125 116
715 4 2 2 2 127 51 11 119
716 4 2 2 2 129 134 116 51
717 4 2 2 2 127 51 119 129
718 4 2 2 2 129 119 127 125
719 4 2 2 2 110 131 130 109
720 4 2 2 2 109 130 9 131
721 4 2 2 2 121 130 9 44
722 4 2 2 2 122 48 13 135
723 4 2 2 2 44 121 130 125
724 4 2 2 2 110 138 111 112
725 4 2 2 2 131 138 125 135
726 4 2 2 2 115 137 14 46
727 4 2 2 2 126 52 12 123
728 4 2 2 2 123 126 52 125
729 4 2 2 2 50 137 14 115
730 4 2 2 2 136 137 115 46
731 4 2 2 2 121 9 131 49
732 4 2 2 2 121 131 130 125
733 4 2 2 2 131 130 9 121
734 4 2 2 2 113 132 115 125
735 4 2 2 2 113 50 115 132
736 4 2 2 2 128 50 10 113
737 4 2 2 2 132 113 128 125
738 4 2 2 2 128 50 113 132
739 4 2 2 2 133 105 135 125
740 4 2 2 2 52 124 125 133
741 4 2 2 2 133 48 105 16
742 4 2 2 2 16 133 124 52
743 4 2 2 2 136 137 125 115
744 4 2 2 2 132 138 137 125
745 4 2 2 2 41 130 9 109
746 4 2 2 2 134 120 15 51
747 4 2 2 2 129 118 120 119
748 4 2 2 2 129 120 134 51
749 4 2 2 2 135 122 124 125
750 4 2 2 2 135 48 124 122
751 4 2 2 2 133 48 16 124
752 4 2 2 2 133 135 124 125
753 4 2 2 2 133 48 124 135
754 4 2 2 2 116 136 134 125
755 4 2 2 2 115 136 116 125
756 4 2 2 2 46 115 136 116
757 4 2 2 2 136 134 15 116
758 4 2 2 2 46 136 15 116
759 4 2 2 2 109 41 130 110
760 4 2 2 2 110 131 109 111
$EndElements
-77
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@@ -1,77 +0,0 @@
// Square-in-square 2D geometry for MFEM
// Creates concentric squares with different material attributes
// Define the square sizes
L_outer = 2.0;
L_inner = 0.5;
// Set mesh size and algorithm
mesh_size = 1.0;
Mesh.Algorithm = 6; // Frontal-Delaunay for 2D triangular mesh
Mesh.CharacteristicLengthFactor = 1.0;
Mesh.MshFileVersion = 2.2;
// Define center point for concentric squares
cx = 0.0;
cy = 0.0;
// Define the points (vertices of the outer square)
Point(1) = {cx-L_outer/2, cy-L_outer/2, 0, mesh_size}; // bottom-left outer
Point(2) = {cx+L_outer/2, cy-L_outer/2, 0, mesh_size}; // bottom-right outer
Point(3) = {cx+L_outer/2, cy+L_outer/2, 0, mesh_size}; // top-right outer
Point(4) = {cx-L_outer/2, cy+L_outer/2, 0, mesh_size}; // top-left outer
// Define the points (vertices of the inner square)
Point(5) = {cx-L_inner/2, cy-L_inner/2, 0, mesh_size}; // bottom-left inner
Point(6) = {cx+L_inner/2, cy-L_inner/2, 0, mesh_size}; // bottom-right inner
Point(7) = {cx+L_inner/2, cy+L_inner/2, 0, mesh_size}; // top-right inner
Point(8) = {cx-L_inner/2, cy+L_inner/2, 0, mesh_size}; // top-left inner
// Define the lines (edges of the outer square)
Line(1) = {1, 2}; // bottom edge
Line(2) = {2, 3}; // right edge
Line(3) = {3, 4}; // top edge
Line(4) = {4, 1}; // left edge
// Define the lines (edges of the inner square)
Line(5) = {5, 6}; // bottom edge
Line(6) = {6, 7}; // right edge
Line(7) = {7, 8}; // top edge
Line(8) = {8, 5}; // left edge
// Define the surfaces
// Outer square boundary
Line Loop(1) = {1, 2, 3, 4};
// Inner square boundary (hole in the outer region)
Line Loop(2) = {5, 6, 7, 8};
// Define the surface areas
// Outer region (annular region between squares)
Plane Surface(1) = {1, 2}; // Outer loop minus inner loop (creates hole)
// Inner region (solid inner square)
Plane Surface(2) = {2}; // Inner loop only
// Assign physical groups for materials
Physical Surface(1) = {1}; // Outer material (annular region)
Physical Surface(2) = {2}; // Inner material (solid square)
// Physical lines for boundary conditions
// Outer square boundary edges
Physical Line(1) = {1}; // outer bottom
Physical Line(2) = {2}; // outer right
Physical Line(3) = {3}; // outer top
Physical Line(4) = {4}; // outer left
// Inner square boundary edges
Physical Line(5) = {5}; // inner bottom
Physical Line(6) = {6}; // inner right
Physical Line(7) = {7}; // inner top
Physical Line(8) = {8}; // inner left
// Mesh control for quality
Mesh.OptimizeNetgen = 1;
Mesh.Optimize = 1;
Mesh.ElementOrder = 1;
Mesh.RecombineAll = 0; // Keep triangular elements (don't recombine to quads)
-50
View File
@@ -1,50 +0,0 @@
$MeshFormat
2.2 0 8
$EndMeshFormat
$Nodes
13
1 -1 -1 0
2 1 -1 0
3 1 1 0
4 -1 1 0
5 -0.25 -0.25 0
6 0.25 -0.25 0
7 0.25 0.25 0
8 -0.25 0.25 0
9 -2.752797989558076e-12 -1 0
10 1 -2.752797989558076e-12 0
11 2.752797989558076e-12 1 0
12 -1 2.752797989558076e-12 0
13 0 0 0
$EndNodes
$Elements
28
1 1 2 1 1 1 9
2 1 2 1 1 9 2
3 1 2 2 2 2 10
4 1 2 2 2 10 3
5 1 2 3 3 3 11
6 1 2 3 3 11 4
7 1 2 4 4 4 12
8 1 2 4 4 12 1
9 1 2 5 5 5 6
10 1 2 6 6 6 7
11 1 2 7 7 7 8
12 1 2 8 8 8 5
13 2 2 1 1 6 5 9
14 2 2 1 1 5 8 12
15 2 2 1 1 7 6 10
16 2 2 1 1 8 7 11
17 2 2 1 1 9 5 1
18 2 2 1 1 5 12 1
19 2 2 1 1 6 9 2
20 2 2 1 1 10 6 2
21 2 2 1 1 7 10 3
22 2 2 1 1 11 7 3
23 2 2 1 1 8 11 4
24 2 2 1 1 8 4 12
25 2 2 2 2 5 6 13
26 2 2 2 2 8 5 13
27 2 2 2 2 6 7 13
28 2 2 2 2 7 8 13
$EndElements
-38
View File
@@ -1,38 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
# PYRAMID = 7
dimension
2
elements
2
1 3 0 1 4 3
1 2 1 2 4
boundary
5
1 1 0 1
1 1 1 2
1 1 2 4
1 1 4 3
1 1 3 0
vertices
5
2
0 0
1 0
2 0
0 1
1 1
+1 -2
View File
@@ -1083,8 +1083,7 @@ EXCLUDE_PATTERNS =
# ANamespace::AClass, ANamespace::*Test
EXCLUDE_SYMBOLS = mfem::internal \
mfem::kernels::internal \
mfem::future::detail
mfem::kernels::internal
# The EXAMPLE_PATH tag can be used to specify one or more files or directories
# that contain example code fragments that are included (see the \include
-4
View File
@@ -201,7 +201,6 @@ namespace mfem {
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
* - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
* - <a class="el" href="nurbs__surface_8cpp_source.html">NURBS Surface</a>: interpolate a 3D Surface in a NURBS Patch
*
* <H3>Miniapps</H3>
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
@@ -246,9 +245,6 @@ namespace mfem {
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
* - <a class="el" href="lor__elast_8cpp_source.html">LOR Elasticity</a>: solve linear elasticity with LOR preconditioning on GPUs
* - <a class="el" href="reflector_8cpp_source.html">Reflector Miniapp</a>: reflect a mesh about a plane
* - <a class="el" href="ref321_8cpp_source.html">3:1 Refinement Miniapp</a>: perform 3:1 anisotropic mesh refinements
* - <a class="el" href="pref321_8cpp_source.html">3:1 Refinement Miniapp</a>: parallel 3:1 anisotropic mesh refinements
*
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
*/
+21 -34
View File
@@ -50,10 +50,6 @@
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
//
// Device simplices sample runs:
// ex1 -pa -d gpu -m ../data/inline-tet.mesh
// ex1 -pa -d gpu -m ../data/inline-tri.mesh
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Poisson problem
// -Delta u = 1 with homogeneous Dirichlet boundary conditions.
@@ -142,25 +138,25 @@ int main(int argc, char *argv[])
}
// 5. Define a finite element space on the mesh. Here we use continuous
// Lagrange finite elements of the specified order.
// - If order < 1, we instead use an isoparametric/isogeometric space.
// - If the mesh is simplicial and partial assembly is requested,
// we use the positive basis, which supports device execution.
// Lagrange finite elements of the specified order. If order < 1, we
// instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
auto basis_type = (pa && mesh.IsSimplexMesh()) ?
BasisType::Positive : BasisType::GaussLobatto;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim, basis_type);
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (mesh.GetNodes())
{
fec = mesh.GetNodes()->OwnFEC();
delete_fec = false;
cout << "Using isoparametric FEs: " << fec->Name() << endl;
}
else
{
fec = new H1_FECollection(order = 1, dim, basis_type);
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
FiniteElementSpace fespace(&mesh, fec);
cout << "Number of finite element unknowns: "
@@ -228,29 +224,17 @@ int main(int argc, char *argv[])
// 11. Solve the linear system A X = B.
if (!pa)
{
#ifdef MFEM_USE_CUDSS
if (Device::Allows(Backend::CUDA_MASK))
{
// Use cuDSS to solve the system.
CuDSSSolver cudss_solver;
cudss_solver.SetOperator(*A);
cudss_solver.Mult(B, X);
}
else
#endif
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
#else
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
UMFPackSolver umf_solver;
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
umf_solver.SetOperator(*A);
umf_solver.Mult(B, X);
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
UMFPackSolver umf_solver;
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
umf_solver.SetOperator(*A);
umf_solver.Mult(B, X);
#endif
}
}
else
{
@@ -289,14 +273,17 @@ int main(int argc, char *argv[])
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
sol_sock << "solution\n" << mesh << x << flush;
}
// 15. Free the used memory.
if (order > 0) { delete fec; }
if (delete_fec)
{
delete fec;
}
return 0;
}
+34 -60
View File
@@ -42,11 +42,7 @@
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/beam-tet.mesh
//
// Device simplices sample runs:
// mpirun -np 4 ex1p -pa -d gpu -m ../data/inline-tet.mesh
// mpirun -np 4 ex1p -pa -d gpu -m ../data/inline-tri.mesh
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Poisson problem
@@ -87,9 +83,6 @@ int main(int argc, char *argv[])
const char *device_config = "cpu";
bool visualization = true;
bool algebraic_ceed = false;
#ifdef MFEM_USE_CUDSS
bool cudss_solver = false;
#endif
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -109,10 +102,6 @@ int main(int argc, char *argv[])
args.AddOption(&algebraic_ceed, "-a", "--algebraic",
"-no-a", "--no-algebraic",
"Use algebraic Ceed solver");
#endif
#ifdef MFEM_USE_CUDSS
args.AddOption(&cudss_solver, "-cudss", "--cudss-solver", "-no-cudss",
"--no-cudss-solver", "Use the cuDSS Solver.");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
@@ -169,20 +158,19 @@ int main(int argc, char *argv[])
}
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order.
// - If order < 1, we instead use an isoparametric/isogeometric space.
// - If the mesh is simplicial and partial assembly is requested,
// we use the positive basis, which supports device execution.
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
auto basis_type = (pa && pmesh.IsSimplexMesh()) ?
BasisType::Positive : BasisType::GaussLobatto;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim, basis_type);
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (pmesh.GetNodes())
{
fec = pmesh.GetNodes()->OwnFEC();
delete_fec = false;
if (myid == 0)
{
cout << "Using isoparametric FEs: " << fec->Name() << endl;
@@ -190,7 +178,8 @@ int main(int argc, char *argv[])
}
else
{
fec = new H1_FECollection(order = 1, dim, basis_type);
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
ParFiniteElementSpace fespace(&pmesh, fec);
HYPRE_BigInt size = fespace.GlobalTrueVSize();
@@ -259,51 +248,33 @@ int main(int argc, char *argv[])
// 13. Solve the linear system A X = B.
// * With full assembly, use the BoomerAMG preconditioner from hypre.
// * With partial assembly, use Jacobi smoothing, for now.
#ifdef MFEM_USE_CUDSS
if (!pa && (Device::Allows(Backend::CUDA_MASK) && cudss_solver))
Solver *prec = NULL;
if (pa)
{
// Solve using a direct solver with cuDSS
CuDSSSolver cudss_solver(MPI_COMM_WORLD);
cudss_solver.SetMatrixSymType(
CuDSSSolver::SYMMETRIC_POSITIVE_DEFINITE);
cudss_solver.SetMatrixViewType(CuDSSSolver::UPPER);
cudss_solver.SetOperator(*A);
cudss_solver.Mult(B, X);
}
else
#endif
{
Solver *prec = NULL;
if (pa)
if (UsesTensorBasis(fespace))
{
if (UsesTensorBasis(fespace))
if (algebraic_ceed)
{
if (algebraic_ceed)
{
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
}
else
{
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
}
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
}
else
{
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
}
}
else
{
prec = new HypreBoomerAMG;
}
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
if (prec)
{
cg.SetPreconditioner(*prec);
}
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
}
else
{
prec = new HypreBoomerAMG;
}
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
@@ -337,7 +308,10 @@ int main(int argc, char *argv[])
}
// 17. Free the used memory.
if (order > 0) { delete fec; }
if (delete_fec)
{
delete fec;
}
return 0;
}
-9
View File
@@ -95,15 +95,6 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
}
if (amg_elast && !static_cond && reorder_space)
{
if (myid == 0)
cerr << "\nThe AMG elasticity solver requires ordering byVDIM! "
<< "Ignoring the specified option -nodes/--by-nodes.\n"
<< endl;
reorder_space = false;
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
+1 -14
View File
@@ -57,8 +57,6 @@ set(SRCS
integ/lininteg_domain_grad.cpp
integ/lininteg_domain_vectorfe.cpp
integ/nonlininteg_vecconvection_pa.cpp
integ/nonlininteg_vecconvection_pa_diag.cpp
integ/nonlininteg_vecconvection_pa_grad.cpp
integ/nonlininteg_vecconvection_mf.cpp
coefficient.cpp
complex_fem.cpp
@@ -135,7 +133,7 @@ set(SRCS
tmop/assemble/diag2.cpp
tmop/assemble/grad2_limit.cpp
tmop/assemble/grad2.cpp
tmop/assemble/diag3_limit.cpp
tmop/assemble/diag3_limit.cpp
tmop/assemble/diag3.cpp
tmop/assemble/grad3_limit.cpp
tmop/assemble/grad3.cpp
@@ -173,12 +171,8 @@ set(SRCS
tmop_tools.cpp
tmop_amr.cpp
gslib.cpp
gslib/findptsedge_local_2.cpp
gslib/findptsedge_local_3.cpp
gslib/findptssurf_local_3.cpp
gslib/findpts_local_2.cpp
gslib/findpts_local_3.cpp
gslib/interpolate_local_1.cpp
gslib/interpolate_local_2.cpp
gslib/interpolate_local_3.cpp
transfer.cpp
@@ -197,20 +191,14 @@ set(HDRS
integ/bilininteg_dgtrace_kernels.hpp
integ/bilininteg_vecdiffusion_kernels.hpp
integ/bilininteg_convection_kernels.hpp
integ/bilininteg_diffusion_pa_simplices.hpp
integ/bilininteg_diffusion_kernels.hpp
integ/bilininteg_elasticity_kernels.hpp
integ/bilininteg_hcurl_kernels.hpp
integ/bilininteg_hdiv_kernels.hpp
integ/bilininteg_hcurlhdiv_kernels.hpp
integ/bilininteg_mass_kernels.hpp
integ/bilininteg_mass_pa_simplices.hpp
integ/bilininteg_vecdiffusion_pa.hpp
integ/bilininteg_vecdiv_pa.hpp
integ/bilininteg_vecmass_pa.hpp
integ/nonlininteg_vecconvection_pa.hpp
integ/nonlininteg_vecconvection_pa_diag.hpp
integ/nonlininteg_vecconvection_pa_grad.hpp
coefficient.hpp
complex_fem.hpp
convergence.hpp
@@ -317,7 +305,6 @@ set(HDRS
tmop_tools.hpp
tmop_amr.hpp
gslib.hpp
gslib/gslib_kernel_helpers.hpp
transfer.hpp
hyperbolic.hpp
integrator.hpp
-25
View File
@@ -1255,31 +1255,6 @@ void BilinearForm::Mult(const Vector &x, Vector &y) const
}
}
void BilinearForm::AddMult(const Vector &x, Vector &y, const real_t a) const
{
if (ext)
{
ext->AddMult(x, y, a);
}
else
{
mat->AddMult(x, y, a);
}
}
void BilinearForm::AddMultTranspose(const Vector &x, Vector &y,
const real_t a) const
{
if (ext)
{
ext->AddMultTranspose(x, y, a);
}
else
{
mat->AddMultTranspose(x, y, a);
}
}
void BilinearForm::MultTranspose(const Vector & x, Vector & y) const
{
if (ext)
+4 -3
View File
@@ -307,8 +307,8 @@ public:
{ mat->Mult(x, y); mat_e->AddMult(x, y); }
/// Add the matrix vector multiple to a vector: $ y += a M x $
void AddMult(const Vector &x, Vector &y,
const real_t a = 1.0) const override;
void AddMult(const Vector &x, Vector &y, const real_t a = 1.0) const override
{ mat -> AddMult (x, y, a); }
/** @brief Add the original uneliminated matrix vector multiple to a vector.
The original matrix is $ M + Me $ so we have:
@@ -318,7 +318,8 @@ public:
/// Add the matrix transpose vector multiplication: $ y += a M^T x $
void AddMultTranspose(const Vector & x, Vector & y,
const real_t a = 1.0) const override;
const real_t a = 1.0) const override
{ mat->AddMultTranspose(x, y, a); }
/** @brief Add the original uneliminated matrix transpose vector
multiple to a vector. The original matrix is $ M + M_e $
+2 -12
View File
@@ -1997,11 +1997,7 @@ void PADiscreteLinearOperatorExtension::Assemble()
}
else
{
const L2ElementRestriction* l2_elem_restrict =
dynamic_cast<const L2ElementRestriction*>(elem_restrict_test);
MFEM_VERIFY(l2_elem_restrict,
"A real ElementRestriction is required in this setting!");
test_multiplicity = 1.0;
mfem_error("A real ElementRestriction is required in this setting!");
}
auto tm = test_multiplicity.ReadWrite();
@@ -2040,13 +2036,7 @@ void PADiscreteLinearOperatorExtension::AddMult(
}
else
{
const L2ElementRestriction* l2_elem_restrict =
dynamic_cast<const L2ElementRestriction*>(elem_restrict_test);
MFEM_VERIFY(l2_elem_restrict,
"In this setting you need a real ElementRestriction!");
tempY.SetSize(y.Size());
l2_elem_restrict->MultTranspose(localTest, tempY);
y += tempY;
mfem_error("In this setting you need a real ElementRestriction!");
}
}
+4 -22
View File
@@ -1345,8 +1345,7 @@ real_t DiffusionIntegrator::ComputeFluxEnergy
}
const IntegrationRule &DiffusionIntegrator::GetRule(
const FiniteElement &trial_fe, const FiniteElement &test_fe,
const bool stroud)
const FiniteElement &trial_fe, const FiniteElement &test_fe)
{
int order;
if (trial_fe.Space() == FunctionSpace::Pk)
@@ -1363,15 +1362,7 @@ const IntegrationRule &DiffusionIntegrator::GetRule(
{
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
}
if (stroud)
{
return StroudIntRules.Get(trial_fe.GetGeomType(), order);
}
else
{
return IntRules.Get(trial_fe.GetGeomType(), order);
}
return IntRules.Get(trial_fe.GetGeomType(), order);
}
MassIntegrator::MassIntegrator(const IntegrationRule *ir)
@@ -1458,8 +1449,7 @@ void MassIntegrator::AssembleElementMatrix2(
const IntegrationRule &MassIntegrator::GetRule(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
const ElementTransformation &Trans,
const bool stroud)
const ElementTransformation &Trans)
{
// int order = trial_fe.GetOrder() + test_fe.GetOrder();
const int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderW();
@@ -1468,15 +1458,7 @@ const IntegrationRule &MassIntegrator::GetRule(const FiniteElement &trial_fe,
{
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
}
if (stroud)
{
return StroudIntRules.Get(trial_fe.GetGeomType(), order);
}
else
{
return IntRules.Get(trial_fe.GetGeomType(), order);
}
return IntRules.Get(trial_fe.GetGeomType(), order);
}
+334 -534
View File
File diff suppressed because it is too large Load Diff
+17 -1
View File
@@ -41,9 +41,14 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
tol = tol_i;
lbound.SetSize(ncp, nb);
ubound.SetSize(ncp, nb);
lbound_t.SetSize(nb, ncp);
ubound_t.SetSize(nb, ncp);
nodes.SetSize(nb);
weights.SetSize(nb);
control_points.SetSize(ncp);
xhat.SetSize(nb);
what.SetSize(nb);
cphat.SetSize(ncp);
auto scalenodes = [](const Vector &in, const real_t a, const real_t b) -> Vector
{
@@ -90,6 +95,10 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
MFEM_ABORT("Unsupported interval points. Use [0,1].\n");
}
control_points = scalenodes(control_points, 0.0, 1.0); // rescale to [0,1]
for (int i = 0; i < ncp; i++)
{
cphat(i) = 2.0*control_points(i) - 1.0;
}
Poly_1D::Basis &basis1d(poly1d.GetBasis(nb-1, b_type));
@@ -145,6 +154,8 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
lbound(j,i) = std::max(lbound(j,i),0_r);
}
}
lbound_t(i,j) = lbound(j,i);
ubound_t(i,j) = ubound(j,i);
}
}
@@ -176,6 +187,11 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
nodes(i) = irule.IntPoint(i).x;
}
}
for (int i = 0; i < nb; i++)
{
xhat(i) = 2.0*nodes(i) - 1.0;
what(i) = 2.0*weights(i);
}
if (b_type == 2)
{
@@ -755,4 +771,4 @@ void PLBound::Print(std::ostream &outp) const
ubound.Print(outp);
}
}
}
+615 -1
View File
@@ -13,6 +13,7 @@
#define MFEM_BOUNDS
#include "../config/config.hpp"
#include "../general/forall.hpp"
#include "fespace.hpp"
namespace mfem
@@ -60,7 +61,9 @@ private:
bool proj = true; // Use linear projection to compute bounds.
real_t tol = 0.0; // offset bounds to avoid round-off errors
Vector nodes, weights, control_points;
Vector xhat, what, cphat;
DenseMatrix lbound, ubound; // ncp x nb matrices with bounds of all bases
DenseMatrix lbound_t, ubound_t; // nb x ncp transposes for device kernel
// Some auxillary storage for computing the bounds with Bernstein
DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
DenseMatrix basisMatInt; // Bernstein bases at GLL nodes
@@ -113,7 +116,10 @@ public:
* @details This projection increases the computational cost but results in
* tighter bounds.
*/
void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
void SetProjectionFlagForBounding(bool proj_)
{
proj = proj_;
}
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 1D/2D/3D.
@@ -137,9 +143,23 @@ public:
/// Get number of control points used to compute the bounds.
int GetNControlPoints() const { return ncp; }
/// Get the underlying 1D basis type.
int GetBasisType() const { return b_type; }
/// Get 1D control point locations (lexicographic order) in [0,1].
const Vector &GetControlPoints() const { return control_points; }
/** @brief Compute element-wise bounds from a lexicographic E-vector.
*
* @details The expected layout of @a e_vec is `ND x VDIM x NE`, where
* `ND = nb^rdim`, `VDIM = fes_vdim`, and `NE` is the number of elements.
* The output layout matches GridFunction::GetElementBounds:
* `NE x active_vdim`, with the element index varying fastest.
*/
void GetElementBoundsKernel(const int rdim, const int fes_vdim,
const Vector &e_vec, Vector &lower,
Vector &upper, const int vdim = 0) const;
/** @brief Get lower and upper bounding matrix (ncp^dim x nb^dim)
*
* @details The matrices can be used to compute the bounds at control points
@@ -183,6 +203,600 @@ private:
const int cp_type_i, const real_t tol_i);
};
namespace internal
{
struct PLBoundDeviceData
{
int nb;
int ncp;
const real_t *xhat;
const real_t *what;
const real_t *cphat;
const real_t *lbound;
const real_t *ubound;
};
template<int T_NB = 0, bool T_PROJ = true>
inline void GetElementBoundsKernel1D(const PLBoundDeviceData &data,
const int fes_vdim,
const int ne,
const Vector &e_vec,
Vector &lower,
Vector &upper,
const int comp0,
const int ncomp)
{
constexpr int GENERIC_MAX_ND = 32;
constexpr int MAX_ND = T_NB ? T_NB : GENERIC_MAX_ND;
constexpr int BLOCK_X = 2*MAX_ND;
const int nd = T_NB ? T_NB : data.nb;
MFEM_VERIFY(nd <= MAX_ND,
"Device element bounds kernel supports up to 32 "
"1D degrees of freedom.");
const auto E = Reshape(e_vec.Read(), nd, fes_vdim, ne);
auto L = Reshape(lower.Write(), ne, ncomp);
auto U = Reshape(upper.Write(), ne, ncomp);
mfem::forall_2D<BLOCK_X>(ne*ncomp, BLOCK_X, 1,
[=] MFEM_HOST_DEVICE (int ec)
{
const int e = ec % ne;
const int c = ec / ne;
const int vc = comp0 + c;
const real_t *coeff = &E(0, vc, e);
const int tid = MFEM_THREAD_ID(x);
MFEM_SHARED real_t sproj[MAX_ND];
MFEM_SHARED real_t ssum0[MAX_ND];
MFEM_SHARED real_t ssum1[MAX_ND];
MFEM_SHARED real_t smin[BLOCK_X];
MFEM_SHARED real_t smax[BLOCK_X];
MFEM_SHARED real_t sa0;
MFEM_SHARED real_t sa1;
MFEM_FOREACH_THREAD(i, x, nd)
{
if constexpr (T_PROJ)
{
const real_t x = data.xhat[i];
const real_t w = data.what[i];
ssum0[i] = 0.5*coeff[i]*w;
ssum1[i] = 1.5*coeff[i]*w*x;
}
else
{
ssum0[i] = 0.0;
ssum1[i] = 0.0;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(ii, x, 1)
{
sa0 = 0.0;
sa1 = 0.0;
for (int i = 0; i < nd; i++)
{
sa0 += ssum0[i];
sa1 += ssum1[i];
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(i, x, nd)
{
if constexpr (T_PROJ)
{
const real_t x = data.xhat[i];
sproj[i] = coeff[i] - sa0 - sa1*x;
}
else
{
sproj[i] = coeff[i];
}
}
MFEM_SYNC_THREAD;
real_t lower_local = HUGE_VAL;
real_t upper_local = -HUGE_VAL;
MFEM_FOREACH_THREAD(j, x, data.ncp)
{
real_t lo = 0.0;
real_t hi = 0.0;
if constexpr (T_PROJ)
{
const real_t xcp = data.cphat[j];
lo = sa0 + sa1*xcp;
hi = lo;
}
for (int i = 0; i < nd; i++)
{
const real_t val = sproj[i];
const real_t lv = data.lbound[j + i*data.ncp]*val;
const real_t uv = data.ubound[j + i*data.ncp]*val;
lo += lv < uv ? lv : uv;
hi += lv > uv ? lv : uv;
}
lower_local = lower_local < lo ? lower_local : lo;
upper_local = upper_local > hi ? upper_local : hi;
}
smin[tid] = lower_local;
smax[tid] = upper_local;
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(ii, x, 1)
{
real_t lower_ec = smin[0];
real_t upper_ec = smax[0];
const int nthreads = MFEM_THREAD_SIZE(x);
const int nactive = data.ncp < nthreads ? data.ncp : nthreads;
for (int t = 1; t < nactive; t++)
{
lower_ec = lower_ec < smin[t] ? lower_ec : smin[t];
upper_ec = upper_ec > smax[t] ? upper_ec : smax[t];
}
L(e, c) = lower_ec;
U(e, c) = upper_ec;
}
});
}
template<int T_NB = 0, int T_NCP = 0, bool T_PROJ = true>
inline void GetElementBoundsKernel2D(const PLBoundDeviceData &data,
const int fes_vdim,
const int ne,
const Vector &e_vec,
Vector &lower,
Vector &upper,
const int comp0,
const int ncomp)
{
constexpr int DEFAULT_MAX_NB = 8;
constexpr int DEFAULT_MAX_CP = 3*DEFAULT_MAX_NB;
constexpr int MAX_NB = T_NB ? T_NB : DEFAULT_MAX_NB;
constexpr int MAX_CP = T_NCP ? T_NCP : DEFAULT_MAX_CP;
constexpr int MAX_THREADS = MAX_CP*MAX_CP;
const int nb = data.nb;
const int ncp = data.ncp;
const int nd = nb*nb;
MFEM_VERIFY(nb <= MAX_NB,
"Device 2D element bounds kernel exceeds its compile-time "
"1D degree bound.");
MFEM_VERIFY(ncp <= MAX_CP,
"Device 2D element bounds kernel exceeds its compile-time "
"control-point bound.");
MFEM_VERIFY(ncp*ncp <= MAX_THREADS,
"Device 2D element bounds kernel exceeds its compile-time "
"thread-block bound.");
const auto E = Reshape(e_vec.Read(), nd, fes_vdim, ne);
auto L = Reshape(lower.Write(), ne, ncomp);
auto U = Reshape(upper.Write(), ne, ncomp);
mfem::forall_2D<MAX_THREADS>(ne*ncomp, ncp, ncp,
[=] MFEM_HOST_DEVICE (int ec)
{
const int e = ec % ne;
const int c = ec / ne;
const int vc = comp0 + c;
const real_t *coeff = &E(0, vc, e);
const int tx = MFEM_THREAD_ID(x);
const int ty = MFEM_THREAD_ID(y);
MFEM_SHARED real_t sproj[MAX_NB*MAX_NB];
MFEM_SHARED real_t srow_min[MAX_NB*MAX_CP];
MFEM_SHARED real_t srow_max[MAX_NB*MAX_CP];
MFEM_SHARED real_t srow_a0[MAX_NB];
MFEM_SHARED real_t srow_a1[MAX_NB];
MFEM_SHARED real_t sa0[MAX_CP];
MFEM_SHARED real_t sa1[MAX_CP];
MFEM_SHARED real_t smin[MAX_THREADS];
MFEM_SHARED real_t smax[MAX_THREADS];
// Stage 1a: for each nodal row, form the per-node contributions to the
// row-wise linear fit used by the first 1D bounding solve.
MFEM_FOREACH_THREAD(jrow, y, nb)
{
const real_t *row_coeff = coeff + jrow*nb;
const int row_ncp_off = jrow*MAX_CP;
MFEM_FOREACH_THREAD(i, x, nb)
{
if constexpr (T_PROJ)
{
const real_t x = data.xhat[i];
const real_t w = data.what[i];
srow_min[row_ncp_off + i] = 0.5*row_coeff[i]*w;
srow_max[row_ncp_off + i] = 1.5*row_coeff[i]*w*x;
}
else
{
srow_min[row_ncp_off + i] = 0.0;
srow_max[row_ncp_off + i] = 0.0;
}
}
}
MFEM_SYNC_THREAD;
// Stage 1b: reduce the row-wise projection coefficients a0/a1.
if constexpr (T_PROJ)
{
MFEM_FOREACH_THREAD(jrow, y, nb)
{
const int row_ncp_off = jrow*MAX_CP;
real_t a0 = 0.0;
real_t a1 = 0.0;
MFEM_FOREACH_THREAD(ii, x, 1)
{
for (int i = 0; i < nb; i++)
{
a0 += srow_min[row_ncp_off + i];
a1 += srow_max[row_ncp_off + i];
}
srow_a0[jrow] = a0;
srow_a1[jrow] = a1;
}
}
MFEM_SYNC_THREAD;
}
// Stage 1c: subtract the row-wise linear fit once and cache the
// projected row coefficients for reuse across all x-control points.
MFEM_FOREACH_THREAD(jrow, y, nb)
{
const real_t *row_coeff = coeff + jrow*nb;
MFEM_FOREACH_THREAD(i, x, nb)
{
if constexpr (T_PROJ)
{
const real_t x = data.xhat[i];
sproj[jrow*MAX_NB + i] = row_coeff[i]
- srow_a0[jrow] - srow_a1[jrow]*x;
}
else
{
sproj[jrow*MAX_NB + i] = row_coeff[i];
}
}
}
MFEM_SYNC_THREAD;
// Stage 1d: solve the first 1D bounding problem along each nodal row and
// store bounds at every x-direction control point.
MFEM_FOREACH_THREAD(icp, x, ncp)
{
MFEM_FOREACH_THREAD(jrow, y, nb)
{
const int row_cp_off = jrow*ncp;
real_t lo = 0.0;
real_t hi = 0.0;
if constexpr (T_PROJ)
{
const real_t xcp = data.cphat[icp];
lo = srow_a0[jrow] + srow_a1[jrow]*xcp;
hi = lo;
}
for (int i = 0; i < nb; i++)
{
const real_t val = sproj[jrow*MAX_NB + i];
const real_t lv = data.lbound[icp + i*data.ncp]*val;
const real_t uv = data.ubound[icp + i*data.ncp]*val;
lo += lv < uv ? lv : uv;
hi += lv > uv ? lv : uv;
}
srow_min[row_cp_off + icp] = lo;
srow_max[row_cp_off + icp] = hi;
}
}
MFEM_SYNC_THREAD;
// Stage 2a: from the row bounds, form the per-row contributions to the
// second 1D projection solve in the y-direction.
MFEM_FOREACH_THREAD(icp, x, ncp)
{
MFEM_FOREACH_THREAD(jrow, y, nb)
{
const int row_cp_off = jrow*ncp;
if constexpr (T_PROJ)
{
const real_t x = data.xhat[jrow];
const real_t w = data.what[jrow];
const real_t t = 0.5*(srow_min[row_cp_off + icp] +
srow_max[row_cp_off + icp]);
smin[row_cp_off + icp] = 0.5*t*w;
smax[row_cp_off + icp] = 1.5*t*w*x;
}
else
{
smin[row_cp_off + icp] = 0.0;
smax[row_cp_off + icp] = 0.0;
}
}
}
MFEM_SYNC_THREAD;
// Stage 2b: reduce the y-direction projection coefficients for each
// x-control-point column.
MFEM_FOREACH_THREAD(jj, y, 1)
{
MFEM_FOREACH_THREAD(icp, x, ncp)
{
real_t a0 = 0.0;
real_t a1 = 0.0;
for (int jrow = 0; jrow < nb; jrow++)
{
a0 += smin[jrow*ncp + icp];
a1 += smax[jrow*ncp + icp];
}
sa0[icp] = a0;
sa1[icp] = a1;
}
}
MFEM_SYNC_THREAD;
// Stage 2c: subtract the y-direction linear fit from the intermediate
// row bounds so the final tensor-product bound uses the perturbation.
if constexpr (T_PROJ)
{
MFEM_FOREACH_THREAD(icp, x, ncp)
{
MFEM_FOREACH_THREAD(jrow, y, nb)
{
const int row_cp_off = jrow*ncp;
const real_t x = data.xhat[jrow];
const real_t t = sa0[icp] + sa1[icp]*x;
srow_min[row_cp_off + icp] -= t;
srow_max[row_cp_off + icp] -= t;
}
}
}
MFEM_SYNC_THREAD;
// Stage 3: each thread now owns one 2D control point (icp, kcp) and
// accumulates its final lower/upper bound from the row-bound data.
MFEM_FOREACH_THREAD(icp, x, ncp)
{
MFEM_FOREACH_THREAD(kcp, y, ncp)
{
real_t lo = 0.0;
real_t hi = 0.0;
if constexpr (T_PROJ)
{
const real_t xcp = data.cphat[kcp];
lo = sa0[icp] + sa1[icp]*xcp;
hi = lo;
}
for (int jrow = 0; jrow < nb; jrow++)
{
const real_t w0 = srow_min[jrow*ncp + icp];
const real_t w1 = srow_max[jrow*ncp + icp];
const real_t lb = data.lbound[kcp + jrow*data.ncp];
const real_t ub = data.ubound[kcp + jrow*data.ncp];
const real_t v0 = lb*w0;
const real_t v1 = ub*w0;
const real_t v2 = lb*w1;
const real_t v3 = ub*w1;
real_t vlo = v0 < v1 ? v0 : v1;
real_t vhi = v0 > v1 ? v0 : v1;
vlo = vlo < v2 ? vlo : v2;
vlo = vlo < v3 ? vlo : v3;
vhi = vhi > v2 ? vhi : v2;
vhi = vhi > v3 ? vhi : v3;
lo += vlo;
hi += vhi;
}
const int slot = kcp*ncp + icp;
smin[slot] = lo;
smax[slot] = hi;
}
}
MFEM_SYNC_THREAD;
const int lane = ty*ncp + tx;
const int nactive = ncp*ncp;
const int nthreads = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
// Reduce all 2D control-point bounds to one lower/upper pair per
// (element, component).
if (nthreads == 1)
{
if (tx == 0 && ty == 0)
{
real_t lower_ec = smin[0];
real_t upper_ec = smax[0];
for (int t = 1; t < nactive; t++)
{
lower_ec = lower_ec < smin[t] ? lower_ec : smin[t];
upper_ec = upper_ec > smax[t] ? upper_ec : smax[t];
}
L(e, c) = lower_ec;
U(e, c) = upper_ec;
}
}
else
{
for (int stride = (nactive + 1)/2; stride > 0;
stride = (stride + 1)/2)
{
if (lane < stride && lane + stride < nactive)
{
smin[lane] = smin[lane] < smin[lane + stride] ?
smin[lane] : smin[lane + stride];
smax[lane] = smax[lane] > smax[lane + stride] ?
smax[lane] : smax[lane + stride];
}
MFEM_SYNC_THREAD;
if (stride == 1) { break; }
}
if (lane == 0)
{
L(e, c) = smin[0];
U(e, c) = smax[0];
}
}
});
}
} // namespace internal
inline void PLBound::GetElementBoundsKernel(const int rdim, const int fes_vdim,
const Vector &e_vec,
Vector &lower, Vector &upper,
const int vdim) const
{
MFEM_VERIFY(b_type != BasisType::Positive,
"Bernstein device bounds are not implemented.");
if (rdim == 3)
{
MFEM_ABORT("Device element bounds kernel currently only supports 1D/2D.");
}
MFEM_VERIFY(rdim == 1 || rdim == 2, "Invalid element dimension.");
MFEM_VERIFY(vdim >= -1 && vdim <= fes_vdim, "Invalid vector component.");
const int nd = static_cast<int>(std::pow(nb, rdim));
const int ne = e_vec.Size()/(nd*fes_vdim);
const int ncomp = (vdim > 0) ? 1 : fes_vdim;
lower.SetSize(ne*ncomp, e_vec);
upper.SetSize(ne*ncomp, e_vec);
lower.UseDevice(true);
upper.UseDevice(true);
if (!proj)
{
MFEM_ABORT("Device element bounds kernel currently requires projection "
"enabled.");
}
const real_t *dxhat = xhat.Read();
const real_t *dwhat = what.Read();
const real_t *dcphat = cphat.Read();
const real_t *dlbound = lbound.Read();
const real_t *dubound = ubound.Read();
internal::PLBoundDeviceData data
{
nb,
ncp,
dxhat,
dwhat,
dcphat,
dlbound,
dubound
};
const int comp0 = (vdim > 0) ? (vdim - 1) : 0;
if (rdim == 1)
{
switch (nb)
{
case 2: return internal::GetElementBoundsKernel1D<2, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 3: return internal::GetElementBoundsKernel1D<3, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 4: return internal::GetElementBoundsKernel1D<4, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 5: return internal::GetElementBoundsKernel1D<5, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 6: return internal::GetElementBoundsKernel1D<6, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 7: return internal::GetElementBoundsKernel1D<7, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 8: return internal::GetElementBoundsKernel1D<8, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 9: return internal::GetElementBoundsKernel1D<9, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
case 10: return internal::GetElementBoundsKernel1D<10, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
default: return internal::GetElementBoundsKernel1D<0, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
}
}
#define MFEM_PLBOUND_2D_DISPATCH(NB, NCP) \
return internal::GetElementBoundsKernel2D<NB, NCP, true>(data, fes_vdim, ne, \
e_vec, lower, upper, \
comp0, ncomp)
switch (nb)
{
case 2:
switch (ncp)
{
case 4: MFEM_PLBOUND_2D_DISPATCH(2, 4);
case 6: MFEM_PLBOUND_2D_DISPATCH(2, 6);
case 8: MFEM_PLBOUND_2D_DISPATCH(2, 8);
}
break;
case 3:
switch (ncp)
{
case 6: MFEM_PLBOUND_2D_DISPATCH(3, 6);
case 9: MFEM_PLBOUND_2D_DISPATCH(3, 9);
case 12: MFEM_PLBOUND_2D_DISPATCH(3, 12);
}
break;
case 4:
switch (ncp)
{
case 8: MFEM_PLBOUND_2D_DISPATCH(4, 8);
case 12: MFEM_PLBOUND_2D_DISPATCH(4, 12);
case 16: MFEM_PLBOUND_2D_DISPATCH(4, 16);
}
break;
case 5:
switch (ncp)
{
case 10: MFEM_PLBOUND_2D_DISPATCH(5, 10);
case 15: MFEM_PLBOUND_2D_DISPATCH(5, 15);
case 20: MFEM_PLBOUND_2D_DISPATCH(5, 20);
}
break;
case 6:
switch (ncp)
{
case 12: MFEM_PLBOUND_2D_DISPATCH(6, 12);
case 18: MFEM_PLBOUND_2D_DISPATCH(6, 18);
case 24: MFEM_PLBOUND_2D_DISPATCH(6, 24);
}
break;
case 7:
switch (ncp)
{
case 14: MFEM_PLBOUND_2D_DISPATCH(7, 14);
case 21: MFEM_PLBOUND_2D_DISPATCH(7, 21);
case 28: MFEM_PLBOUND_2D_DISPATCH(7, 28);
}
break;
case 8:
switch (ncp)
{
case 16: MFEM_PLBOUND_2D_DISPATCH(8, 16);
case 24: MFEM_PLBOUND_2D_DISPATCH(8, 24);
case 32: MFEM_PLBOUND_2D_DISPATCH(8, 32);
}
break;
}
#undef MFEM_PLBOUND_2D_DISPATCH
return internal::GetElementBoundsKernel2D<0, 0, true>(data, fes_vdim, ne,
e_vec, lower, upper,
comp0, ncomp);
}
} // namespace mfem
#endif // MFEM_BOUNDS
-6
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@@ -54,8 +54,6 @@ void Coefficient::Project(QuadratureFunction &qf)
QuadratureSpaceBase &qspace = *qf.GetSpace();
const int ne = qspace.GetNE();
Vector values;
// GetValues makes a reference, but we need it to be valid on Host
qf.HostWrite();
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
@@ -329,8 +327,6 @@ void VectorCoefficient::Project(QuadratureFunction &qf)
const int ne = qspace.GetNE();
DenseMatrix values;
Vector col;
// GetValues makes a reference, but we need it to be valid on Host
qf.HostWrite();
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
@@ -699,8 +695,6 @@ void MatrixCoefficient::Project(QuadratureFunction &qf, bool transpose)
QuadratureSpaceBase &qspace = *qf.GetSpace();
const int ne = qspace.GetNE();
DenseMatrix values, matrix;
// GetValues makes a reference, but we need it to be valid on Host
qf.HostWrite();
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
+1 -5
View File
@@ -1055,8 +1055,7 @@ public:
typedef VectorCoefficient DiagonalMatrixCoefficient;
/** Base class for matrix-valued coefficients that optionally depend on time
and space. */
/// Base class for Matrix Coefficients that optionally depend on time and space.
class MatrixCoefficient
{
protected:
@@ -1103,9 +1102,6 @@ public:
/// the quadrature points. The matrix will be transposed or not according to
/// the boolean argument @a transpose.
///
/// The stored entries use the same row/column convention as `Eval()`,
/// unless `transpose == true`, in which case `K^T` is stored instead.
///
/// The @a vdim of the QuadratureFunction should be equal to the height times
/// the width of the matrix.
virtual void Project(QuadratureFunction &qf, bool transpose=false);
+164 -1049
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File diff suppressed because it is too large Load Diff
-421
View File
@@ -166,75 +166,6 @@ public:
return sqrt(err_r * err_r + err_i * err_i);
}
/// @brief Returns Max|u_ex - u_h| error for complex-valued H1 or L2 elements
///
/// Compute the $L_\infty$ error across the entire domain.
///
/// @param[in] exsolr Coefficient object reproducing the real part of the
/// anticipated values of the scalar field, Re(u_ex).
/// @param[in] exsoli Coefficient object reproducing the imaginary part of
/// the anticipated values of the scalar field, Im(u_ex).
/// @param[in] irs Optional pointer to an array of custom integration
/// rules e.g. higher order than the default rules. If
/// present the array will be indexed by
/// Geometry::Type.
///
/// @note Uses ComputeLpError internally. See the ComputeLpError
/// documentation for generalizations of this error computation.
///
/// @note If an array of integration rules is provided through @a irs, be
/// sure to include valid rules for each element type that may occur
/// in the list of elements.
///
virtual real_t ComputeMaxError(Coefficient &exsolr,
Coefficient &exsoli,
const IntegrationRule *irs[] = NULL) const
{
return ComputeLpError(infinity(), exsolr, exsoli, NULL, irs);
}
/// @brief Returns ||u_ex - u_h||_Lp for complex-valued H1 or L2 elements
///
/// Computes:
/// $$(\sum_{elems} \int_{elem} w \, |u_{ex} - u_h|^p)^{1/p}$$
/// Where:
/// $$|u_{ex} - u_h| = \sqrt{Re(u_{ex} - u_h)^2 + Im(u_{ex} - u_h)^2}$$
///
/// @param[in] p Real value indicating the exponent of the $L^p$ norm.
/// To avoid domain errors p should have a positive value,
/// either finite or infinite.
/// @param[in] exsolr Coefficient object reproducing the real part of the
/// anticipated values of the scalar field, Re(u_ex).
/// @param[in] exsoli Coefficient object reproducing the imaginary part of
/// the anticipated values of the scalar field, Im(u_ex).
/// @param[in] weight Optional pointer to a Coefficient object reproducing
/// a weighting function, w.
/// @param[in] irs Optional pointer to an array of custom integration
/// rules e.g. higher order than the default rules. If
/// present the array will be indexed by Geometry::Type.
/// @param[in] elems Optional pointer to a marker array, with a length
/// equal to the number of local elements, indicating
/// which elements to integrate over. Only those elements
/// corresponding to non-zero entries in @a elems will
/// contribute to the computed L2 error.
///
/// @note If an array of integration rules is provided through @a irs, be
/// sure to include valid rules for each element type that may occur
/// in the list of elements.
///
/// @note Quadratures with negative weights (as in some simplex integration
/// rules in MFEM) can produce negative integrals even with
/// non-negative integrands. To avoid returning negative errors this
/// function uses the absolute values of the element-wise integrals.
/// This may lead to results which are not entirely consistent with
/// such integration rules.
virtual real_t ComputeLpError(const real_t p,
Coefficient &exsolr,
Coefficient &exsoli,
Coefficient *weight = NULL,
const IntegrationRule *irs[] = NULL,
const Array<int> *elems = NULL) const;
/// Save the ComplexGridFunction to an output stream.
virtual void Save(std::ostream &out) const;
@@ -392,9 +323,6 @@ private:
bool RealInteg();
bool ImagInteg();
void BuildComplexOperator(OperatorHandle &A_r, OperatorHandle &A_i,
OperatorHandle &A) const;
public:
SesquilinearForm(FiniteElementSpace *fes,
ComplexOperator::Convention
@@ -508,186 +436,6 @@ public:
virtual ~SesquilinearForm();
};
/** Class for a mixed sesquilinear form
A mixed sesquilinear form is a generalization of a mixed bilinear form to
complex-valued fields. Mixed sesquilinear forms are linear in the second
argument but the first argument involves a complex conjugate in the sense
that:
a(alpha u, beta v) = conj(alpha) beta a(u, v)
The @a convention argument in the class's constructor is documented in the
mfem::ComplexOperator class found in linalg/complex_operator.hpp.
When supplying integrators to the MixedSesquilinearForm either the real or
imaginary integrator can be NULL. This indicates that the corresponding
portion of the complex-valued material coefficient is equal to zero.
*/
class MixedSesquilinearForm
{
private:
ComplexOperator::Convention conv;
MixedBilinearForm * mblfr;
MixedBilinearForm * mblfi;
/* These methods check if the real/imag parts of the sesqulinear form are not
empty */
bool RealInteg();
bool ImagInteg();
public:
MixedSesquilinearForm(
FiniteElementSpace * trial_fes,
FiniteElementSpace * test_fes,
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
/** @brief Create a MixedSesquilinearForm on the given trial and test
FiniteElementSpaces, using the same integrators as the
MixedBilinearForms @a bfr and @a bfi.
The FiniteElementSpace pointers are not owned by the newly constructed
object.
The integrators are copied as pointers and they are not owned by the
newly constructed MixedSesquilinearForm. */
MixedSesquilinearForm(
FiniteElementSpace * trial_fes,
FiniteElementSpace * test_fes,
MixedBilinearForm * bfr,
MixedBilinearForm * bfi,
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
ComplexOperator::Convention GetConvention() const { return conv; }
void SetConvention(const ComplexOperator::Convention & convention) { conv = convention; }
/// Set the desired assembly level.
/** Valid choices are:
- AssemblyLevel::LEGACY (default)
- AssemblyLevel::FULL
- AssemblyLevel::PARTIAL
- AssemblyLevel::ELEMENT
- AssemblyLevel::NONE
This method must be called before assembly. */
void SetAssemblyLevel(AssemblyLevel assembly_level)
{
mblfr->SetAssemblyLevel(assembly_level);
mblfi->SetAssemblyLevel(assembly_level);
}
MixedBilinearForm & real() { return *mblfr; }
MixedBilinearForm & imag() { return *mblfi; }
const MixedBilinearForm & real() const { return *mblfr; }
const MixedBilinearForm & imag() const { return *mblfi; }
/// Adds new Domain Integrator.
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds new Domain Integrator, restricted to specific attributes.
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> & elem_marker);
/// Adds new Boundary Integrator.
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/** @brief Adds new boundary Integrator, restricted to specific boundary
attributes.
Assumes ownership of @a bfi.
The mfem::array @a bdr_marker is stored internally as a pointer to the given
mfem::Array<int> object. */
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> & bdr_marker);
/// Adds new interior Face Integrator. Assumes ownership of @a bfi.
void AddInteriorFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds new boundary Face Integrator. Assumes ownership of @a bfi.
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/** @brief Adds new boundary Face Integrator, restricted to specific boundary
attributes.
Assumes ownership of @a bfi.
The mfem::array @a bdr_marker is stored internally as a pointer to the given
mfem::Array<int> object. */
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> & bdr_marker);
/** @brief Add a trace face integrator. Assumes ownership of @a bfi.
This type of integrator assembles terms over all faces of the mesh using
the face FE from the trial space and the two adjacent volume FEs from
the test space. */
void AddTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> &bdr_marker);
/// Assemble the local matrix
void Assemble(int skip_zeros = 1);
/// Finalizes the matrix initialization.
void Finalize(int skip_zeros = 1);
/// Updates the internal mixed forms with the new finite element space.
virtual void Update();
/** @brief Return a ComplexSparseMatrix wrapping the local (L-dof) real
and imaginary matrices of the form.
The returned wrapper has to be deleted by the caller, but it does not
own the wrapped real and imaginary matrices, which remain owned by
this form. */
ComplexSparseMatrix *AssembleComplexSparseMatrix();
/// Return the trial FE space associated with the MixedSesquilinearForm.
FiniteElementSpace *TrialFESpace() { return mblfr->TrialFESpace(); }
/// Read-only access to the associated trial FiniteElementSpace.
const FiniteElementSpace *TrialFESpace() const { return mblfr->TrialFESpace(); }
/// Return the test FE space associated with the MixedSesquilinearForm.
FiniteElementSpace *TestFESpace() { return mblfr->TestFESpace(); }
/// Read-only access to the associated test FiniteElementSpace.
const FiniteElementSpace *TestFESpace() const { return mblfr->TestFESpace(); }
void FormRectangularLinearSystem(const Array<int> & ess_trial_tdof_list,
const Array<int> & ess_test_tdof_list,
Vector & x,
Vector & b,
OperatorHandle & A,
Vector & X,
Vector & B);
void FormRectangularSystemMatrix(const Array<int> & ess_trial_tdof_list,
const Array<int> & ess_test_tdof_list,
OperatorHandle & A);
virtual ~MixedSesquilinearForm();
};
#ifdef MFEM_USE_MPI
/// Class for parallel complex-valued grid function - real + imaginary part
@@ -989,12 +737,6 @@ private:
bool RealInteg();
bool ImagInteg();
void SetImaginaryEssentialDiagonalToZero(
const Array<int> &ess_tdof_list, OperatorHandle &A);
void BuildComplexOperator(OperatorHandle &A_r, OperatorHandle &A_i,
OperatorHandle &A) const;
public:
ParSesquilinearForm(ParFiniteElementSpace *pf,
ComplexOperator::Convention
@@ -1110,169 +852,6 @@ public:
virtual ~ParSesquilinearForm();
};
/** Class for a parallel mixed sesquilinear form
A mixed sesquilinear form is a generalization of a mixed bilinear form to
complex-valued fields. Mixed sesquilinear forms are linear in the second
argument but the first argument involves a complex conjugate in the sense
that:
a(alpha u, beta v) = conj(alpha) beta a(u, v)
The @a convention argument in the class's constructor is documented in the
mfem::ComplexOperator class found in linalg/complex_operator.hpp.
When supplying integrators to the ParMixedSesquilinearForm either the real
or imaginary integrator can be NULL. This indicates that the corresponding
portion of the complex-valued material coefficient is equal to zero.
*/
class ParMixedSesquilinearForm
{
private:
ComplexOperator::Convention conv;
ParMixedBilinearForm * pmblfr;
ParMixedBilinearForm * pmblfi;
/* These methods check if the real/imag parts of the sesqulinear form are
not empty */
bool RealInteg();
bool ImagInteg();
public:
ParMixedSesquilinearForm(
ParFiniteElementSpace * trial_fes,
ParFiniteElementSpace * test_fes,
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
/** @brief Create a ParMixedSesquilinearForm on the given trial and test
ParFiniteElementSpaces, using the same integrators as the
ParMixedBilinearForms @a pbfr and @a pbfi.
The ParFiniteElementSpace pointers are not owned by the newly
constructed object.
The integrators are copied as pointers and they are not owned by the
newly constructed ParMixedSesquilinearForm. */
ParMixedSesquilinearForm(
ParFiniteElementSpace * trial_fes,
ParFiniteElementSpace * test_fes,
ParMixedBilinearForm * pbfr,
ParMixedBilinearForm * pbfi,
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
ComplexOperator::Convention GetConvention() const { return conv; }
void SetConvention(const ComplexOperator::Convention & convention) { conv = convention; }
/// Set the desired assembly level.
/** Valid choices are:
- AssemblyLevel::LEGACY (default)
- AssemblyLevel::FULL
- AssemblyLevel::PARTIAL
- AssemblyLevel::ELEMENT
- AssemblyLevel::NONE
This method must be called before assembly. */
void SetAssemblyLevel(AssemblyLevel assembly_level)
{
pmblfr->SetAssemblyLevel(assembly_level);
pmblfi->SetAssemblyLevel(assembly_level);
}
ParMixedBilinearForm & real() { return *pmblfr; }
ParMixedBilinearForm & imag() { return *pmblfi; }
const ParMixedBilinearForm & real() const { return *pmblfr; }
const ParMixedBilinearForm & imag() const { return *pmblfi; }
/// Adds new Domain Integrator.
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds new Domain Integrator, restricted to specific attributes.
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> & elem_marker);
/// Adds new Boundary Integrator.
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/** @brief Adds new boundary Integrator, restricted to specific boundary
attributes.
Assumes ownership of @a bfi.
The mfem::array @a bdr_marker is stored internally as a pointer to the given
mfem::Array<int> object. */
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> & bdr_marker);
/// Adds new interior Face Integrator. Assumes ownership of @a bfi.
void AddInteriorFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds new boundary Face Integrator. Assumes ownership of @a bfi.
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/** @brief Adds new boundary Face Integrator, restricted to specific boundary
attributes.
Assumes ownership of @a bfi.
The mfem::array @a bdr_marker is stored internally as a pointer to the given
mfem::Array<int> object. */
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> & bdr_marker);
/** @brief Add a trace face integrator. Assumes ownership of @a bfi.
This type of integrator assembles terms over all faces of the mesh using
the face FE from the trial space and the two adjacent volume FEs from
the test space. */
void AddTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag);
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
BilinearFormIntegrator * bfi_imag,
Array<int> &bdr_marker);
/// Assemble the local matrix
void Assemble(int skip_zeros = 1);
/// Finalizes the matrix initialization.
void Finalize(int skip_zeros = 1);
/// Updates the internal mixed forms with the new finite element space.
virtual void Update();
/// Returns the matrix assembled on the true dofs, i.e. P^t A P.
/** The returned matrix has to be deleted by the caller. */
ComplexHypreParMatrix * ParallelAssemble();
void FormRectangularLinearSystem(const Array<int> & ess_trial_tdof_list,
const Array<int> & ess_test_tdof_list,
Vector & x,
Vector & b,
OperatorHandle & A,
Vector & X,
Vector & B);
void FormRectangularSystemMatrix(const Array<int> & ess_trial_tdof_list,
const Array<int> & ess_test_tdof_list,
OperatorHandle & A);
virtual ~ParMixedSesquilinearForm();
};
#endif // MFEM_USE_MPI
}
-4
View File
@@ -114,10 +114,6 @@ void ConduitDataCollection::Save()
n_mesh["fields"][name]);
}
// TODO: in parallel, we need to call ParFiniteElementSpace::ApplyDofSigns
// for all ParGridFunction objects before and after saving, see
// ParGridFunction::Save.
// save mesh data
SaveMeshAndFields(myid,
n_mesh,
+5 -23
View File
@@ -38,24 +38,9 @@ int DataCollection::create_directory(const std::string &dir_name,
// create directories recursively
const char path_delim = '/';
std::string::size_type pos = 0;
int err_flag = 0;
int err_flag;
#ifdef MFEM_USE_MPI
const ParMesh *pmesh = dynamic_cast<const ParMesh*>(mesh);
// In addition to the global root, let the lowest rank on each shared-memory
// node create the directory too, so that node-local (non-shared) filesystems
// get it on every node rather than only where the global root lives. On a
// shared filesystem the extra mkdir() hits EEXIST and is tolerated below.
bool node_root = true;
if (pmesh)
{
MPI_Comm node_comm;
MPI_Comm_split_type(pmesh->GetComm(), MPI_COMM_TYPE_SHARED, myid,
MPI_INFO_NULL, &node_comm);
int node_rank;
MPI_Comm_rank(node_comm, &node_rank);
node_root = (node_rank == 0);
MPI_Comm_free(&node_comm);
}
#endif
do
@@ -67,7 +52,7 @@ int DataCollection::create_directory(const std::string &dir_name,
err_flag = mkdir(subdir.c_str(), 0777);
err_flag = (err_flag && (errno != EEXIST)) ? 1 : 0;
#else
if (node_root || pmesh == NULL)
if (myid == 0 || pmesh == NULL)
{
err_flag = mkdir(subdir.c_str(), 0777);
err_flag = (err_flag && (errno != EEXIST)) ? 1 : 0;
@@ -79,8 +64,7 @@ int DataCollection::create_directory(const std::string &dir_name,
#ifdef MFEM_USE_MPI
if (pmesh)
{
MPI_Allreduce(MPI_IN_PLACE, &err_flag, 1, MPI_INT, MPI_MAX,
pmesh->GetComm());
MPI_Bcast(&err_flag, 1, MPI_INT, 0, pmesh->GetComm());
}
#endif
@@ -825,7 +809,7 @@ ParaViewDataCollectionBase::ParaViewDataCollectionBase(
void ParaViewDataCollectionBase::SetLevelsOfDetail(int levels_of_detail_)
{
levels_of_detail = std::max(levels_of_detail_, 1);
levels_of_detail = levels_of_detail_;
}
void ParaViewDataCollectionBase::SetHighOrderOutput(bool high_order_output_)
@@ -1197,14 +1181,12 @@ void ParaViewDataCollection::SaveGFieldVTU(std::ostream &os, int ref_,
DenseMatrix vval, pmat;
std::vector<char> buf;
int vec_dim = it->second->VectorDim();
int map_type = it->second->FESpace()->GetTypicalFE()->GetMapType();
os << "<DataArray type=\"" << GetDataTypeString()
<< "\" Name=\"" << it->first
<< "\" NumberOfComponents=\"" << vec_dim << "\" "
<< VTKComponentLabels(vec_dim) << " "
<< "format=\"" << GetDataFormatString() << "\" >" << '\n';
if (vec_dim == 1 && (map_type == FiniteElement::VALUE ||
map_type == FiniteElement::INTEGRAL))
if (vec_dim == 1)
{
for (int i = 0; i < mesh->GetNE(); i++)
{
-48
View File
@@ -51,52 +51,4 @@ DifferentiableOperator::DifferentiableOperator(
}
}
void FDJacobian::Mult(const Vector &v, Vector &y) const
{
// See [1] for choice of eps.
//
// [1] Woodward, C.S., Gardner, D.J. and Evans, K.J., 2015. On the use of
// finite difference matrix-vector products in Newton-Krylov solvers for
// implicit climate dynamics with spectral elements. Procedia Computer
// Science, 51, pp.2036-2045.
real_t eps;
if (fixed_eps > 0.0)
{
eps = fixed_eps;
}
else
{
const real_t vnorm_local = v.Norml2();
real_t vnorm;
MPI_Allreduce(&vnorm_local, &vnorm, 1, MPITypeMap<real_t>::mpi_type, MPI_SUM,
MPI_COMM_WORLD);
eps = lambda * (lambda + xnorm / vnorm);
}
// x + eps * v
{
const auto d_v = v.Read();
const auto d_x = x.Read();
auto d_xpev = xpev.Write();
mfem::forall(x.Size(), [=] MFEM_HOST_DEVICE (int i)
{
d_xpev[i] = d_x[i] + eps * d_v[i];
});
}
// y = f(x + eps * v)
op.Mult(xpev, y);
// y = (f(x + eps * v) - f(x)) / eps
{
const auto d_f = f.Read();
auto d_y = y.ReadWrite();
mfem::forall(f.Size(), [=] MFEM_HOST_DEVICE (int i)
{
d_y[i] = (d_y[i] - d_f[i]) / eps;
});
}
}
#endif // MFEM_USE_MPI
+22 -23
View File
@@ -697,18 +697,17 @@ void DifferentiableOperator::AddIntegrator(
// The explicit captures are necessary to avoid dependency on
// the specific instance of this class (this pointer).
restriction_callback = [element_dof_ordering,
solutions_ = this->solutions,
parameters_ = this->parameters]
(std::vector<Vector> &sol,
const std::vector<Vector> &par,
std::vector<Vector> &f)
restriction_callback =
[=, solutions = this->solutions, parameters = this->parameters]
(std::vector<Vector> &sol,
const std::vector<Vector> &par,
std::vector<Vector> &f)
{
restriction<entity_t>(solutions_, sol, f,
restriction<entity_t>(solutions, sol, f,
element_dof_ordering);
restriction<entity_t>(parameters_, par, f,
restriction<entity_t>(parameters, par, f,
element_dof_ordering,
solutions_.size());
solutions.size());
};
prolongation_transpose = get_prolongation_transpose(
@@ -836,19 +835,19 @@ void DifferentiableOperator::AddIntegrator(
// capture by ref:
&restriction_cb = this->restriction_callback,
&fields_e_ = this->fields_e,
&residual_e_ = this->residual_e,
&output_restriction_transpose_ = this->output_restriction_transpose
&fields_e = this->fields_e,
&residual_e = this->residual_e,
&output_restriction_transpose = this->output_restriction_transpose
]
(std::vector<Vector> &sol, const std::vector<Vector> &par, Vector &res)
mutable // mutable: needed to modify 'shmem_cache'
{
restriction_cb(sol, par, fields_e_);
restriction_cb(sol, par, fields_e);
residual_e_ = 0.0;
auto ye = Reshape(residual_e_.ReadWrite(), test_vdim, num_test_dof, num_entities);
residual_e = 0.0;
auto ye = Reshape(residual_e.ReadWrite(), test_vdim, num_test_dof, num_entities);
auto wrapped_fields_e = wrap_fields(fields_e_,
auto wrapped_fields_e = wrap_fields(fields_e,
action_shmem_info.field_sizes,
num_entities);
@@ -879,7 +878,7 @@ void DifferentiableOperator::AddIntegrator(
y, fhat, output_fop, output_dtq_shmem[0],
scratch_shmem, dimension, use_sum_factorization);
}, num_entities, thread_blocks, action_shmem_info.total_size, shmem_cache.ReadWrite());
output_restriction_transpose_(residual_e_, res);
output_restriction_transpose(residual_e, res);
});
// Without this compile-time check, some valid instantiations of this method
@@ -1194,7 +1193,7 @@ void DifferentiableOperator::AddIntegrator(
// capture by ref:
&qpdc_mem = derivative_qp_caches_ref,
&fields_ = fields_ref
&fields = fields_ref
](std::vector<Vector> &f_e, SparseMatrix *&A) mutable
{
auto wrapped_fields_e = wrap_fields(f_e, shmem_info.field_sizes,
@@ -1242,14 +1241,14 @@ void DifferentiableOperator::AddIntegrator(
{
if (input_is_dependent[s])
{
trial_field = &fields_[input_to_field[s]];
trial_field = &fields[input_to_field[s]];
}
}
auto trial_fes = *std::get_if<const ParFiniteElementSpace *>
(&trial_field->data);
auto test_fes = *std::get_if<const ParFiniteElementSpace *>
(&fields_[output_to_field[0]].data);
(&fields[output_to_field[0]].data);
A = new SparseMatrix(test_fes->GetVSize(), trial_fes->GetVSize());
@@ -1335,7 +1334,7 @@ void DifferentiableOperator::AddIntegrator(
input_to_field,
output_to_field,
&spmatcb = assemble_derivative_sparsematrix_callbacks_ref,
&fields_ = fields_ref
&fields = fields_ref
](std::vector<Vector> &f_e, HypreParMatrix *&A) mutable
{
SparseMatrix *spmat = nullptr;
@@ -1367,14 +1366,14 @@ void DifferentiableOperator::AddIntegrator(
{
if (input_is_dependent[s])
{
trial_field = &fields_[input_to_field[s]];
trial_field = &fields[input_to_field[s]];
}
}
auto trial_fes = *std::get_if<const ParFiniteElementSpace *>
(&trial_field->data);
auto test_fes = *std::get_if<const ParFiniteElementSpace *>
(&fields_[output_to_field[0]].data);
(&fields[output_to_field[0]].data);
if (same_test_and_trial)
{
+768 -742
View File
File diff suppressed because it is too large Load Diff
+52 -9
View File
@@ -597,7 +597,7 @@ struct ThreadBlocks
int z = 1;
};
#if defined(MFEM_USE_CUDA_OR_HIP_LANG)
#if defined(MFEM_USE_CUDA_OR_HIP)
template <typename func_t>
__global__ void forall_kernel_shmem(func_t f, int n)
{
@@ -617,11 +617,10 @@ void forall(func_t f,
int num_shmem = 0,
real_t *shmem = nullptr)
{
internal::RequireKernelCompilation();
#if defined(MFEM_USE_CUDA_OR_HIP_LANG)
if (Device::Allows(Backend::CUDA_MASK | Backend::HIP_MASK))
if (Device::Allows(Backend::CUDA_MASK) ||
Device::Allows(Backend::HIP_MASK))
{
#if defined(MFEM_USE_CUDA_OR_HIP)
// int gridsize = (N + Z - 1) / Z;
int num_bytes = num_shmem * sizeof(decltype(shmem));
dim3 block_size(blocks.x, blocks.y, blocks.z);
@@ -632,10 +631,9 @@ void forall(func_t f,
MFEM_GPU_CHECK(hipGetLastError());
#endif
MFEM_DEVICE_SYNC;
return;
}
#endif
if (Device::Allows(Backend::CPU_MASK))
}
else if (Device::Allows(Backend::CPU_MASK))
{
MFEM_ASSERT(!((bool)num_shmem != (bool)shmem),
"Backend::CPU needs a pre-allocated shared memory block");
@@ -673,7 +671,52 @@ public:
MPI_COMM_WORLD);
}
void Mult(const Vector &v, Vector &y) const override;
void Mult(const Vector &v, Vector &y) const override
{
// See [1] for choice of eps.
//
// [1] Woodward, C.S., Gardner, D.J. and Evans, K.J., 2015. On the use of
// finite difference matrix-vector products in Newton-Krylov solvers for
// implicit climate dynamics with spectral elements. Procedia Computer
// Science, 51, pp.2036-2045.
real_t eps;
if (fixed_eps > 0.0)
{
eps = fixed_eps;
}
else
{
const real_t vnorm_local = v.Norml2();
real_t vnorm;
MPI_Allreduce(&vnorm_local, &vnorm, 1, MPITypeMap<real_t>::mpi_type, MPI_SUM,
MPI_COMM_WORLD);
eps = lambda * (lambda + xnorm / vnorm);
}
// x + eps * v
{
const auto d_v = v.Read();
const auto d_x = x.Read();
auto d_xpev = xpev.Write();
mfem::forall(x.Size(), [=] MFEM_HOST_DEVICE (int i)
{
d_xpev[i] = d_x[i] + eps * d_v[i];
});
}
// y = f(x + eps * v)
op.Mult(xpev, y);
// y = (f(x + eps * v) - f(x)) / eps
{
const auto d_f = f.Read();
auto d_y = y.ReadWrite();
mfem::forall(f.Size(), [=] MFEM_HOST_DEVICE (int i)
{
d_y[i] = (d_y[i] - d_f[i]) / eps;
});
}
}
virtual MemoryClass GetMemoryClass() const override
{
+5 -6
View File
@@ -1316,14 +1316,13 @@ void VectorFiniteElement::Project_RT(
}
}
void VectorFiniteElement::ProjectCurl2D_RT(
void VectorFiniteElement::ProjectGrad_RT(
const real_t *nk, const Array<int> &d2n, const FiniteElement &fe,
ElementTransformation &Trans, DenseMatrix &grad) const
{
// 2D "ProjectCurl_RT"
if (dim != 2)
{
mfem_error("VectorFiniteElement::ProjectCurl2D_RT works only in 2D!");
mfem_error("VectorFiniteElement::ProjectGrad_RT works only in 2D!");
}
DenseMatrix dshape(fe.GetDof(), fe.GetDim());
@@ -1334,8 +1333,8 @@ void VectorFiniteElement::ProjectCurl2D_RT(
for (int k = 0; k < dof; k++)
{
fe.CalcDShape(Nodes.IntPoint(k), dshape);
tk[0] = -nk[d2n[k]*dim+1];
tk[1] = nk[d2n[k]*dim];
tk[0] = nk[d2n[k]*dim+1];
tk[1] = -nk[d2n[k]*dim];
dshape.Mult(tk, grad_k);
for (int j = 0; j < grad_k.Size(); j++)
{
@@ -1382,7 +1381,7 @@ void VectorFiniteElement::ProjectCurl_ND(
}
}
void VectorFiniteElement::ProjectCurl3D_RT(
void VectorFiniteElement::ProjectCurl_RT(
const real_t *nk, const Array<int> &d2n, const FiniteElement &fe,
ElementTransformation &Trans, DenseMatrix &curl) const
{
+8 -52
View File
@@ -167,15 +167,7 @@ public:
/** @brief Full multidimensional representation which does not use tensor
product structure. The ordering of the degrees of freedom is the
same as TENSOR, but the sizes of B and G are the same as FULL.*/
LEXICOGRAPHIC_FULL,
/** @brief Ragged tensor product representation using 1D matrices/tensors
with dimensions using 1D number of quadrature points and ragged tensor degrees of
freedom. */
/** Used only for partial assembly of the H1 positive basis. The
size of B is d1d x qnpt x dim. Since different Gauss-Jacobi quadrature rules
are employed in each dimension, we need to store dim arrays. */
RAGGED_TENSOR
LEXICOGRAPHIC_FULL
};
/// Describes the contents of the #B, #Bt, #G, and #Gt arrays, see #Mode.
@@ -236,39 +228,6 @@ public:
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode);
virtual ~DofToQuad() = default;
};
/** @brief Structure representing the matrices/tensors needed to evaluate (in
reference space) the values, gradients, divergences, or curls of a positive
FiniteElement on simplices at the quadrature points of Stroud conical quadrature. */
class RaggedDofToQuad : public DofToQuad
{
public:
/** @brief Special basis function structures for positive (Bernstein) basis with
partial assembly. The storage layout of Ba1 is ndof x nqpt for scalar elements.
The storage layout of Ba2 is ndof x ndof x nqpt. In particular, we have
Ba2(iqpt, a1, a2) = B^{p-a1}_{a2}(x_{iqpt}). */
Array<real_t> Ba1, Ba2, Ba3;
Array<real_t> Ba1t, Ba2t, Ba3t;
/** @brief Special structures for gradients of positive basis with partial assembly.
The gradient arrays exploit properties of the Bernstein basis which allow grad(B^p_alpha)
to be expressed as the sum of products of B^{p-1}_alpha and the barycentric coordinates.
Thus, Ga1 and Ga2 simply contain the ragged tensor product components of B^{p-1}_alpha */
Array<real_t> Ga1, Ga2, Ga3;
Array<real_t> Ga1t, Ga2t, Ga3t;
/** @brief Mapping from the Bernstein multi-index (a_1, ..., a_d) to the lexicographic
dof index. */
Array<int> lex_map;
Array<int> forward_map2d_diff, forward_map3d_diff;
Array<int> inverse_map2d_diff, inverse_map3d_diff;
Array<int> forward_map2d_mass, forward_map3d_mass;
Array<int> inverse_map2d_mass, inverse_map3d_mass;
};
/// Describes the function space on each element
@@ -957,11 +916,10 @@ protected:
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const;
// Input is a scalar representing the Z (out of plane) component, Output is
// the X-Y (in-plane) RT curl
void ProjectCurl2D_RT(const real_t *nk, const Array<int> &d2n,
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &grad) const;
// rotated gradient in 2D
void ProjectGrad_RT(const real_t *nk, const Array<int> &d2n,
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &grad) const;
// Compute the curl as a discrete operator from ND FE (fe) to ND FE (this).
// The natural FE for the range is RT, so this is an approximation.
@@ -969,9 +927,9 @@ protected:
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &curl) const;
void ProjectCurl3D_RT(const real_t *nk, const Array<int> &d2n,
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &curl) const;
void ProjectCurl_RT(const real_t *nk, const Array<int> &d2n,
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &curl) const;
/** @brief Project a vector coefficient onto the ND basis functions
@param tk Edge tangent vectors for this element type
@@ -1447,8 +1405,6 @@ public:
dof2quad_array_open);
}
const Poly_1D::Basis &GetOpenBasis1D() const { return obasis1d; }
virtual ~VectorTensorFiniteElement();
};
+4 -4
View File
@@ -307,12 +307,12 @@ public:
/** @brief virtual function which evaluates the values of all
shape functions at a given point ip and stores
them in the vector shape of dimension Dof (6) */
them in the vector shape of dimension Dof (4) */
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override;
/** @brief virtual function which evaluates the values of all
partial derivatives of all shape functions at a given
point ip and stores them in the matrix dshape (Dof x Dim) (6 x 3)
point ip and stores them in the matrix dshape (Dof x Dim) (4 x 3)
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
@@ -336,12 +336,12 @@ public:
/** @brief virtual function which evaluates the values of all
shape functions at a given point ip and stores
them in the vector shape of dimension Dof (5) */
them in the vector shape of dimension Dof (4) */
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override;
/** @brief virtual function which evaluates the values of all
partial derivatives of all shape functions at a given
point ip and stores them in the matrix dshape (Dof x Dim) (5 x 3)
point ip and stores them in the matrix dshape (Dof x Dim) (4 x 3)
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
+57 -130
View File
@@ -1757,45 +1757,22 @@ H1_BergotPyramidElement::H1_BergotPyramidElement(const int p, const int btype)
real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
real_t z = ip.z;
if (std::abs(z - 1.0) < apex_tol)
{
// Compute the limit of the basis functions as z->1 with x and y on the
// line between the center of the base and the apex
o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
for (int k = 0; k <= p - maxij; k++)
if (i == 0 && j == 0)
{
T(o++, m) = ((k + 3.) * k + 2.) / 2.;
}
else
{
T(o++, m) = 0.;
}
}
}
else
{
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
o = 0;
for (int i = 0; i <= p; i++)
o = 0;
for (int i = 0; i <= p; i++)
{
for (int j = 0; j <= p; j++)
{
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0, shape_z);
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0, shape_z);
for (int k = 0; k <= p - maxij; k++)
{
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
for (int k = 0; k <= p - maxij; k++)
{
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
}
}
@@ -1816,44 +1793,25 @@ void H1_BergotPyramidElement::CalcShape(const IntegrationPoint &ip,
Vector u(dof);
#endif
const real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
const real_t z = ip.z;
real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
real_t z = ip.z;
if (std::abs(z - 1.0) < apex_tol)
{
// Compute the limit of the basis functions as z->1 with x and y on the
// line between the center of the base and the apex
u = 0.;
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
for (int k = 0; k <= p - maxij; k++, o++)
if (i == 0 && j == 0)
{
u(o) = ((k + 3.) * k + 2.) / 2.;
}
}
}
else
{
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
shape_z);
for (int k = 0; k <= p - maxij; k++)
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0, shape_z);
for (int k = 0; k <= p - maxij; k++)
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
}
Ti.Mult(u, shape);
}
@@ -1872,68 +1830,37 @@ void H1_BergotPyramidElement::CalcDShape(const IntegrationPoint &ip,
Vector dshape_z(order+1);
Vector dshape_z_dt(order+1);
#endif
const real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
const real_t z = ip.z;
real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
real_t z = ip.z;
if (std::abs(z - 1.0) < apex_tol)
{
// Compute the limit of the gradients of the basis functions as
// z->1 with x and y on the line between the center of the base and the
// apex
du = 0.;
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
poly1d.CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
shape_z, dshape_z, dshape_z_dt);
for (int k = 0; k <= p - maxij; k++, o++)
{
int maxij = std::max(i, j);
for (int k = 0; k <= p - maxij; k++, o++)
{
if (i == 0 && j == 0)
{
du(o,2) = (((k + 6.) * k + 11.) * k + 6.) * k / 6.;
}
else if (i == 1 && j == 0)
{
du(o,0) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
}
else if (i == 0 && j == 1)
{
du(o,1) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
}
}
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
pow(1.0 - ip.z, maxij) +
(ip.x * dshape_x(i) * shape_y(j) +
ip.y * shape_x(i) * dshape_y(j)) *
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
maxij * shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
}
}
else
{
poly1d.CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
}
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0,
shape_z, dshape_z, dshape_z_dt);
for (int k = 0; k <= p - maxij; k++, o++)
{
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
pow(1.0 - ip.z, maxij) +
(ip.x * dshape_x(i) * shape_y(j) +
ip.y * shape_x(i) * dshape_y(j)) *
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
maxij * shape_x(i) * shape_y(j) * shape_z(k) *
(maxij > 0 ? pow(1.0 - ip.z, maxij - 1) : 0.0);
}
}
}
Ti.Mult(du, dshape);
}
-2
View File
@@ -208,8 +208,6 @@ private:
#endif
DenseMatrixInverse Ti;
static constexpr real_t apex_tol = 1e-8;
public:
H1_BergotPyramidElement(const int p,
const int btype = BasisType::GaussLobatto);
+57 -131
View File
@@ -1106,16 +1106,9 @@ L2_BergotPyramidElement::L2_BergotPyramidElement(const int p, const int btype)
{
const real_t wik = op[i] + op[k] + op[p-i-k];
const real_t w = wik * wjk * op[p-k];
if (std::abs(w) < apex_tol)
{
Nodes.IntPoint(o++).Set3(0.,0.,1.);
}
else
{
Nodes.IntPoint(o++).Set3(op[i] * (op[j] + op[p-j-k]) / w,
op[j] * (op[i] + op[p-i-k]) / w,
op[k] * op[p-k] / w);
}
Nodes.IntPoint(o++).Set3(op[i] * (op[j] + op[p-j-k]) / w,
op[j] * (op[j] + op[p-j-k]) / w,
op[k] * op[p-k] / w);
}
}
@@ -1132,45 +1125,22 @@ L2_BergotPyramidElement::L2_BergotPyramidElement(const int p, const int btype)
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
const real_t z = ip.z;
if (std::abs(z - 1.0) < apex_tol)
{
// Compute the limit of the basis functions as z->1 with x and y on the
// line between the center of the base and the apex
o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
for (int k = 0; k <= p - maxij; k++)
if (i == 0 && j == 0)
{
T(o++, m) = ((k + 3.) * k + 2.) / 2.;
}
else
{
T(o++, m) = 0.;
}
}
}
else
{
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
o = 0;
for (int i = 0; i <= p; i++)
o = 0;
for (int i = 0; i <= p; i++)
{
for (int j = 0; j <= p; j++)
{
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0, shape_z);
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0, shape_z);
for (int k = 0; k <= p - maxij; k++)
{
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
for (int k = 0; k <= p - maxij; k++)
{
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
}
}
@@ -1195,41 +1165,26 @@ void L2_BergotPyramidElement::CalcShape(const IntegrationPoint &ip,
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
const real_t z = ip.z;
if (std::abs(z - 1.0) < apex_tol)
{
// Compute the limit of the basis functions as z->1 with x and y on the
// line between the center of the base and the apex
u = 0.;
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
for (int k = 0; k <= p - maxij; k++, o++)
if (i == 0 && j == 0)
{
u(o) = ((k + 3.) * k + 2.) / 2.;
}
}
}
else
{
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
poly1d.CalcLegendre(p, x, shape_x.GetData());
poly1d.CalcLegendre(p, y, shape_y.GetData());
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0, shape_z);
int o = 0;
for (int i = 0; i <= p; i++)
{
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
shape_z);
for (int k = 0; k <= p - maxij; k++)
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
for (int k = 0; k <= p - maxij; k++)
{
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij);
}
}
}
Ti.Mult(u, shape);
}
@@ -1253,64 +1208,35 @@ void L2_BergotPyramidElement::CalcDShape(const IntegrationPoint &ip,
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
const real_t z = ip.z;
if (std::abs(z - 1.0) < apex_tol)
{
// Compute the limit of the gradients of the basis functions as
// z->1 with x and y on the line between the center of the base and the
// apex
du = 0.;
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
for (int k = 0; k <= p - maxij; k++, o++)
{
if (i == 0 && j == 0)
{
du(o,2) = (((k + 6.) * k + 11.) * k + 6.) * k / 6.;
}
else if (i == 1 && j == 0)
{
du(o,0) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
}
else if (i == 0 && j == 1)
{
du(o,1) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
}
}
}
}
else
{
Poly_1D::CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
Poly_1D::CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
Poly_1D::CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
Poly_1D::CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
int o = 0;
for (int i = 0; i <= p; i++)
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
z, 1.0,
shape_z, dshape_z, dshape_z_dt);
int o = 0;
for (int i = 0; i <= p; i++)
{
for (int j = 0; j <= p; j++)
{
int maxij = std::max(i, j);
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
shape_z, dshape_z, dshape_z_dt);
for (int k = 0; k <= p - maxij; k++, o++)
{
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
pow(1.0 - ip.z, maxij) +
(ip.x * dshape_x(i) * shape_y(j) +
ip.y * shape_x(i) * dshape_y(j)) *
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
maxij * shape_x(i) * shape_y(j) * shape_z(k) *
(maxij > 0 ? pow(1.0 - ip.z, maxij - 1) : 0.0);
}
for (int k = 0; k <= p - maxij; k++, o++)
{
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1);
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
pow(1.0 - ip.z, maxij) +
(ip.x * dshape_x(i) * shape_y(j) +
ip.y * shape_x(i) * dshape_y(j)) *
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
((maxij > 0) ? (maxij * shape_x(i) * shape_y(j) * shape_z(k) *
pow(1.0 - ip.z, maxij - 1)) : 0.0);
}
}
}
Ti.Mult(du, dshape);
}
-2
View File
@@ -225,8 +225,6 @@ private:
#endif
DenseMatrixInverse Ti;
static constexpr real_t apex_tol = 1e-8;
public:
/// Construct the L2_PyramidElement of order @a p and BasisType @a btype
L2_BergotPyramidElement(const int p,
+1 -38
View File
@@ -1282,49 +1282,12 @@ ND_SegmentElement::ND_SegmentElement(const int p, const int ob_type)
}
}
void ND_SegmentElement::CalcShape(const IntegrationPoint &ip,
Vector &shape) const
{
if (obasis1d.IsIntegratedType()) { obasis1d.ScaleIntegrated(false); }
obasis1d.Eval(ip.x, shape);
}
void ND_SegmentElement::CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const
{
Vector vshape(shape.Data(), dof);
CalcShape(ip, vshape);
}
void ND_SegmentElement::ProjectIntegrated(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(obasis1d.IsIntegratedType(), "Not integrated type");
real_t vk[Geometry::MaxDim];
Vector xk(vk, vc.GetVDim());
const real_t *cp = poly1d.ClosedPoints(dof, BasisType::GaussLobatto);
const IntegrationRule &ir = IntRules.Get(Geometry::SEGMENT, dof);
IntegrationPoint ip;
for (int i = 0; i < dof; i++)
{
const real_t h = cp[i+1] - cp[i];
real_t val = 0.0;
for (int q = 0; q < ir.GetNPoints(); q++)
{
const IntegrationPoint &ip1d = ir.IntPoint(q);
ip.x = cp[i] + h*ip1d.x;
Trans.SetIntPoint(&ip);
vc.Eval(xk, Trans, ip);
val += ip1d.weight*Trans.Jacobian().InnerProduct(tk, vk);
}
dofs(i) = val*h;
}
obasis1d.Eval(ip.x, vshape);
}
const real_t ND_WedgeElement::tk[15] =
+3 -10
View File
@@ -303,7 +303,8 @@ public:
/** @brief Construct the ND_SegmentElement of order @a p and open
BasisType @a ob_type */
ND_SegmentElement(const int p, const int ob_type = BasisType::GaussLegendre);
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override;
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override
{ obasis1d.Eval(ip.x, shape); }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
void CalcVShape(ElementTransformation &Trans,
@@ -324,10 +325,7 @@ public:
using FiniteElement::Project;
void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const override
{
if (obasis1d.IsIntegratedType()) { ProjectIntegrated(vc, Trans, dofs); }
else { Project_ND(tk, dof2tk, vc, Trans, dofs); }
}
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
void ProjectMatrixCoefficient(MatrixCoefficient &mc,
ElementTransformation &T,
Vector &dofs) const override
@@ -340,11 +338,6 @@ public:
ElementTransformation &Trans,
DenseMatrix &grad) const override
{ ProjectGrad_ND(tk, dof2tk, fe, Trans, grad); }
protected:
void ProjectIntegrated(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const;
};
class ND_WedgeElement : public VectorFiniteElement
-302
View File
@@ -557,101 +557,6 @@ H1Pos_TriangleElement::H1Pos_TriangleElement(const int p)
}
}
const DofToQuad &H1Pos_TriangleElement::GetRaggedTensorDofToQuad(
const FiniteElement &fe, const IntegrationRule &ir,
DofToQuad::Mode mode,
Array<DofToQuad*> &dof2quad_array)
{
DofToQuad *d2q = nullptr;
MFEM_VERIFY(mode == DofToQuad::RAGGED_TENSOR, "invalid mode requested");
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
#pragma omp critical (DofToQuad)
#endif
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
}
if (!d2q)
{
d2q = new RaggedDofToQuad;
const int ndof = fe.GetOrder() + 1; // verify
const int nqpt = (int)floor(pow(ir.GetNPoints(), 1.0/fe.GetDim()) + 0.5);
d2q->FE = &fe;
d2q->IntRule = &ir;
d2q->mode = mode;
d2q->ndof = ndof;
d2q->nqpt = nqpt;
RaggedDofToQuad *rd2q = static_cast<RaggedDofToQuad*>(d2q);
rd2q->Ba1.SetSize(nqpt*ndof);
// second component of ragged tensor basis, technically dof*(dof-1)/2 entries
rd2q->Ba2.SetSize((int)nqpt*ndof*ndof);
rd2q->Ba1t.SetSize(nqpt*ndof);
rd2q->Ba2t.SetSize((int)nqpt*ndof*ndof);
// stores first component of ragged tensor basis with order p-1, for gradients only
rd2q->Ga1.SetSize(nqpt*(ndof -1));
// stores second component of ragged tensor basis with order p-1
rd2q->Ga2.SetSize(nqpt*(ndof-1)*(ndof -1));
rd2q->Ga1t.SetSize(nqpt*(ndof -1));
rd2q->Ga2t.SetSize(nqpt*(ndof-1)*(ndof -1));
rd2q->lex_map.SetSize(ndof * ndof);
Vector shape_a1(ndof), shape_a2(ndof * ndof);
Vector shape_Ga1(ndof-1), shape_Ga2((ndof-1) * (ndof-1));
for (int i = 0; i < nqpt; i++)
{
// The first 'nqpt' points in the first dimension 'ir' have the same x-coordinates as those
// of the 1D rule (ie. (2,0) Gauss-Jacobi rule). The first 'nqpt' points in the second dimension
// 'ir' have the same y-coordinates as those of the 1D rule for second dimension (i.e. (1,0)
// Gauss-Jacobi rule). Additionally, the Bernstein PA algorithms expect evaluation of the
// component 1D bases at the Stroud nodes pulled back to the unit square, so perform the pullback
// on the fly.
const real_t x = ir.IntPoint(i).x;
const real_t y = ir.IntPoint(nqpt*i).y / (1.0 - ir.IntPoint(nqpt*i).x);
Poly_1D::CalcBernstein(ndof-1, x, shape_a1);
Poly_1D::CalcBernstein(ndof-2, x, shape_Ga1);
for (int j = 0; j < ndof; j++)
{
rd2q->Ba1t[i+nqpt*j] = rd2q->Ba1[j+ndof*i] = shape_a1(j);
if (j < ndof-1)
{
rd2q->Ga1t[i+nqpt*j] = rd2q->Ga1[j+(ndof-1)*i] = shape_Ga1(j);
Poly_1D::CalcBernstein(ndof-2-j, y, shape_Ga2);
}
Poly_1D::CalcBernstein(ndof-1-j, y, shape_a2);
for (int k = 0; k < ndof-j; k++)
{
rd2q->Ba2t[i + nqpt*(j + ndof*k)] = rd2q->Ba2[k + ndof*(j + ndof*i)] = shape_a2(
k);
if (j < ndof-1 && k < ndof-j-1)
{
rd2q->Ga2t[i + nqpt*(j + (ndof-1)*k)] = rd2q->Ga2[k + (ndof-1)*(j +
(ndof-1)*i)] = shape_Ga2(k);
}
}
}
}
// stores the mapping from 2D Bernstein multi-index (i,j,p-i-j) to the
// lexicographic DOF ordering
for (int i = 0; i < ndof; i++)
{
for (int j = 0; j < ndof-i; j++)
{
int idx = ((2 * (ndof-1) + 3) - j) * j / 2 + i;
rd2q->lex_map[j + ndof*i] = idx;
}
}
dof2quad_array.Append(d2q);
}
}
return *d2q;
}
// static method
void H1Pos_TriangleElement::CalcShape(
const int p, const real_t l1, const real_t l2, real_t *shape)
@@ -844,213 +749,6 @@ H1Pos_TetrahedronElement::H1Pos_TetrahedronElement(const int p)
}
}
const DofToQuad &H1Pos_TetrahedronElement::GetRaggedTensorDofToQuad(
const FiniteElement &fe, const IntegrationRule &ir,
DofToQuad::Mode mode,
Array<DofToQuad*> &dof2quad_array)
{
DofToQuad *d2q = nullptr;
MFEM_VERIFY(mode == DofToQuad::RAGGED_TENSOR, "invalid mode requested");
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
#pragma omp critical (DofToQuad)
#endif
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
}
if (!d2q)
{
d2q = new RaggedDofToQuad;
const int ndof = fe.GetOrder() + 1; // verify
const int nqpt = (int)floor(pow(ir.GetNPoints(), 1.0/fe.GetDim()) + 0.5);
const int basis_dim2d = ndof*(ndof+1) / 2;
const int basis_dim3d = ndof*(ndof+1)*(ndof+2) / 6;
const int basis_dim2d_diff = (ndof-1)*(ndof) / 2;
const int basis_dim3d_diff = (ndof-1)*(ndof)*(ndof+1) / 6;
d2q->FE = &fe;
d2q->IntRule = &ir;
d2q->mode = mode;
d2q->ndof = ndof;
d2q->nqpt = nqpt;
RaggedDofToQuad *rd2q = static_cast<RaggedDofToQuad*>(d2q);
rd2q->Ba1.SetSize(nqpt * ndof);
// second component of ragged tensor basis, technically dof*(dof-1)/2 entries
rd2q->Ba2.SetSize(nqpt * basis_dim2d);
// third component of ragged tensor basis, technically dof*(dof-1)/2 entries
rd2q->Ba3.SetSize(nqpt * basis_dim3d);
rd2q->Ba1t.SetSize(nqpt * ndof);
rd2q->Ba2t.SetSize(nqpt * basis_dim2d);
rd2q->Ba3t.SetSize(nqpt * basis_dim3d);
// stores first component of ragged tensor basis with order p-1, for gradients only
rd2q->Ga1.SetSize(nqpt * (ndof-1));
// stores second component of ragged tensor basis with order p-1
rd2q->Ga2.SetSize(nqpt * basis_dim2d_diff);
// stores third component of ragged tensor basis with order p-1
rd2q->Ga3.SetSize(nqpt * basis_dim3d_diff);
rd2q->Ga1t.SetSize(nqpt * (ndof-1));
rd2q->Ga2t.SetSize(nqpt * basis_dim2d_diff);
rd2q->Ga3t.SetSize(nqpt * basis_dim3d_diff);
rd2q->lex_map.SetSize(ndof * ndof * ndof);
rd2q->forward_map2d_diff.SetSize((ndof-1) * (ndof-1));
rd2q->forward_map3d_diff.SetSize((ndof-1) * (ndof-1) * (ndof-1));
rd2q->inverse_map2d_diff.SetSize(2 * basis_dim2d_diff);
rd2q->inverse_map3d_diff.SetSize(3 * basis_dim3d_diff);
rd2q->forward_map2d_mass.SetSize(ndof * ndof);
rd2q->forward_map3d_mass.SetSize(ndof * ndof * ndof);
rd2q->inverse_map2d_mass.SetSize(2 * basis_dim2d);
rd2q->inverse_map3d_mass.SetSize(2 * basis_dim3d);
// forward and inverse maps for multi-index to collpased 1d index for diffusion, can combine
// these four loops, but need four idx's and clause for shorter diff loops
int idx = 0;
for (int i = 0; i < ndof-1; i++)
{
for (int j = 0; j < ndof-i-1; j++)
{
rd2q->forward_map2d_diff[j + (ndof-1)*i] = idx;
rd2q->inverse_map2d_diff[2*idx] = i;
rd2q->inverse_map2d_diff[1 + 2*idx] = j;
idx++;
}
}
idx = 0;
for (int k = 0; k < ndof-1; k++)
{
for (int j = 0; j < ndof-k-1; j++)
{
for (int i = 0; i < ndof-k-j-1; i++)
{
rd2q->forward_map3d_diff[k + (ndof-1)*(j + (ndof-1)*i)] = idx;
rd2q->inverse_map3d_diff[3*idx] = i;
rd2q->inverse_map3d_diff[1 + 3*idx] = j;
rd2q->inverse_map3d_diff[2 + 3*idx] = k;
idx++;
}
}
}
// forward and inverse maps for multi-index to collpased 1d index for mass
idx = 0;
for (int j = 0; j < ndof; j++)
{
for (int i = 0; i < ndof-j; i++)
{
rd2q->forward_map2d_mass[j + ndof*i] = idx;
rd2q->inverse_map2d_mass[2*idx] = i;
rd2q->inverse_map2d_mass[1 + 2*idx] = j;
idx++;
}
}
idx = 0;
for (int k = 0; k < ndof; k++)
{
for (int j = 0; j < ndof-k; j++)
{
for (int i = 0; i < ndof-k-j; i++)
{
rd2q->forward_map3d_mass[k + ndof*(j + ndof*i)] = idx;
rd2q->inverse_map3d_mass[2*idx] = i;
rd2q->inverse_map3d_mass[1 + 2*idx] = j;
// d2q->inverse_map3d_mass[2 + 3*idx] = k;
idx++;
}
}
}
Vector shape_a1(ndof), shape_a2(ndof * ndof), shape_a3(ndof * ndof * ndof);
Vector shape_Ga1(ndof-1), shape_Ga2(ndof-1), shape_Ga3(ndof-1);
for (int i = 0; i < nqpt; i++)
{
// The first 'nqpt' points in the first dimension 'ir' have the same x-coordinates as those
// of the 1D rule (ie. (2,0) Gauss-Jacobi rule). The first 'nqpt' points in the second dimension
// 'ir' have the same y-coordinates as those of the 1D rule for second dimension (i.e. (1,0)
// Gauss-Jacobi rule). The first 'nqpt' points in the third dimension have the same z-coordinates
// as those of the 1D rule for the third dimension (i.e. Gauss-Legendre rule). Additionally,
// the Bernstein PA algorithms expect evaluation of the component 1D bases at the Stroud nodes
// pulled back to the unit cube, so perform the pullback on the fly.
const real_t x = ir.IntPoint(i).x;
const real_t y = ir.IntPoint(nqpt*i).y / (1.0 - ir.IntPoint(nqpt*i).x);
const real_t z = ir.IntPoint(nqpt*nqpt*i).z / (1.0 - ir.IntPoint(
nqpt*nqpt*i).x - ir.IntPoint(nqpt*nqpt*i).y);
Poly_1D::CalcBernstein(ndof-1, x, shape_a1);
Poly_1D::CalcBernstein(ndof-2, x, shape_Ga1);
for (int j = 0; j < ndof; j++)
{
rd2q->Ba1t[i+nqpt*j] = rd2q->Ba1[j+ndof*i] = shape_a1(j);
if (j < ndof-1)
{
rd2q->Ga1t[i+nqpt*j] = rd2q->Ga1[j+(ndof-1)*i] = shape_Ga1(j);
Poly_1D::CalcBernstein(ndof-2-j, y, shape_Ga2);
}
Poly_1D::CalcBernstein(ndof-1-j, y, shape_a2);
for (int k = 0; k < ndof-j; k++)
{
const int a_2d_mass = rd2q->forward_map2d_mass[k + ndof*j];
rd2q->Ba2t[i + nqpt*a_2d_mass] = rd2q->Ba2[a_2d_mass + basis_dim2d*i] =
shape_a2(
k);
if (j < ndof-1 && k < ndof-j-1)
{
const int a_2d_diff = rd2q->forward_map2d_diff[k + (ndof-1)*j];
rd2q->Ga2t[i + nqpt*a_2d_diff] = rd2q->Ga2[a_2d_diff + basis_dim2d_diff*i] =
shape_Ga2(k);
Poly_1D::CalcBernstein(ndof-2-j-k, z, shape_Ga3);
}
Poly_1D::CalcBernstein(ndof-1-j-k, z, shape_a3);
for (int m = 0; m < ndof-j-k; m++)
{
const int a_3d_mass = rd2q->forward_map3d_mass[m + ndof*(k + ndof*j)];
rd2q->Ba3t[i + nqpt*a_3d_mass] = rd2q->Ba3[a_3d_mass + basis_dim3d*i] =
shape_a3(
m);
if (j < ndof-1 && k < ndof-j-1 && m < ndof-j-k-1)
{
// // collapsed 1D access
// d2q->Ga3[i + nqpt*(m + d2q->offset3d[k + (ndof-1)*j])] = shape_Ga3(m);
// collapsed 1D access with forward mapping
const int a_3d_diff = rd2q->forward_map3d_diff[m + (ndof-1)*(k + (ndof-1)*j)];
rd2q->Ga3t[i + nqpt*a_3d_diff] = rd2q->Ga3[a_3d_diff + basis_dim3d_diff*i] =
shape_Ga3(m);
}
}
}
}
}
// stores the mapping from 3D Bernstein multi-index (i,j,k,p-i-j-k) to the
// lexicographic DOF ordering
int p = ndof - 1;
for (int i = 0; i < ndof; i++)
{
for (int j = 0; j < ndof-i; j++)
{
for (int k = 0; k < ndof-i-j; k++)
{
int dof = (p+1)*(p+2)*(p+3) / 6;
int tet = (p-k)*(p-k+1)*(p-k+2) / 6;
int tri = (p+1-k-j)*(p+2-k-j)/2;
int multi_idx = dof - tet - tri + i;
rd2q->lex_map[k + ndof*(j + ndof*i)] = multi_idx;
}
}
}
dof2quad_array.Append(d2q);
}
}
return *d2q;
}
// static method
void H1Pos_TetrahedronElement::CalcShape(
const int p, const real_t l1, const real_t l2, const real_t l3,
-30
View File
@@ -191,21 +191,6 @@ public:
/// Construct the H1Pos_TriangleElement of order @a p
H1Pos_TriangleElement(const int p);
const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
DofToQuad::Mode mode) const override
{
return (mode == DofToQuad::RAGGED_TENSOR) ?
GetRaggedTensorDofToQuad(*this, ir, mode, dof2quad_array) :
FiniteElement::GetDofToQuad(ir, mode);
}
static const DofToQuad &GetRaggedTensorDofToQuad(
const FiniteElement &fe, const IntegrationRule &ir,
DofToQuad::Mode mode,
Array<DofToQuad*> &dof2quad_array);
const Array<int> &GetDofMap() const { return dof_map; }
// The size of shape is (p+1)(p+2)/2 (dof).
static void CalcShape(const int p, const real_t x, const real_t y,
real_t *shape);
@@ -235,21 +220,6 @@ public:
/// Construct the H1Pos_TetrahedronElement of order @a p
H1Pos_TetrahedronElement(const int p);
const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
DofToQuad::Mode mode) const override
{
return (mode == DofToQuad::RAGGED_TENSOR) ?
GetRaggedTensorDofToQuad(*this, ir, mode, dof2quad_array) :
FiniteElement::GetDofToQuad(ir, mode);
}
static const DofToQuad &GetRaggedTensorDofToQuad(
const FiniteElement &fe, const IntegrationRule &ir,
DofToQuad::Mode mode,
Array<DofToQuad*> &dof2quad_array);
const Array<int> &GetDofMap() const { return dof_map; }
// The size of shape is (p+1)(p+2)(p+3)/6 (dof).
static void CalcShape(const int p, const real_t x, const real_t y,
const real_t z, real_t *shape);
-6
View File
@@ -17,12 +17,6 @@
namespace mfem
{
struct ScalarPyramid
{
// Default basis type for H1 and L2 pyramids
static inline int DefaultType = 1; // Bergot(0) or Fuentes(1)
};
/** Base class for arbitrary order basis functions on pyramid-shaped elements
This base class provides a common class to store temporary vectors,
+16 -6
View File
@@ -73,11 +73,16 @@ public:
void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const override
{ Project_RT(nk, dof2nk, fe, Trans, I); }
// Gradient + rotation = Curl: H1 -> H(div)
void ProjectGrad(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &grad) const override
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, grad); }
// Curl = Gradient + rotation: H1 -> H(div)
void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const override
{ ProjectCurl2D_RT(nk, dof2nk, fe, Trans, curl); }
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, curl); }
void GetFaceMap(const int face_id, Array<int> &face_map) const override;
@@ -143,7 +148,7 @@ public:
void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const override
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
/// @brief Return the mapping from lexicographically ordered face DOFs to
/// lexicographically ordered element DOFs corresponding to local face
@@ -205,11 +210,16 @@ public:
void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const override
{ Project_RT(nk, dof2nk, fe, Trans, I); }
// Gradient + rotation = Curl: H1 -> H(div)
void ProjectGrad(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &grad) const override
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, grad); }
// Curl = Gradient + rotation: H1 -> H(div)
void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const override
{ ProjectCurl2D_RT(nk, dof2nk, fe, Trans, curl); }
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, curl); }
};
@@ -264,7 +274,7 @@ public:
void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const override
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
};
class RT_WedgeElement : public VectorFiniteElement
@@ -322,7 +332,7 @@ public:
void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const override
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
};
/** Arbitrary order H(Div) basis functions defined on pyramid-shaped elements
@@ -418,7 +428,7 @@ public:
virtual void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
void CalcRawVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
+30 -88
View File
@@ -228,19 +228,7 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
}
else if (!strncmp(name, "H1_", 3))
{
// Parse pyramid basis type if included in the name
const char *pyr = strstr(name, "Pyr");
if (pyr == NULL)
{
// Use default pyramid type elements
fec = new H1_FECollection(atoi(name + 7), atoi(name + 3));
}
else
{
// Use specific pyramid type elements
fec = new H1_FECollection(atoi(name + 7), atoi(name + 3),
BasisType::GaussLobatto, atoi(pyr + 3));
}
fec = new H1_FECollection(atoi(name + 7), atoi(name + 3));
}
else if (!strncmp(name, "H1Pos_Trace_", 12))
{
@@ -257,44 +245,26 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
}
else if (!strncmp(name, "H1@", 3))
{
// Parse pyramid basis type if included in the name
const char *pyr = strstr(name, "Pyr");
if (pyr == NULL)
{
// Use default pyramid type elements
fec = new H1_FECollection(atoi(name + 9), atoi(name + 5),
BasisType::GetType(name[3]));
}
else
{
// Use specific pyramid type elements
fec = new H1_FECollection(atoi(name + 9), atoi(name + 5),
BasisType::GetType(name[3]),
atoi(pyr + 3));
}
fec = new H1_FECollection(atoi(name + 9), atoi(name + 5),
BasisType::GetType(name[3]));
}
else if (!strncmp(name, "L2", 2))
else if (!strncmp(name, "L2_T", 4))
fec = new L2_FECollection(atoi(name + 10), atoi(name + 6),
atoi(name + 4));
else if (!strncmp(name, "L2_", 3))
{
// Parse Map Type
const int mtype = strstr(name, "Int") == NULL ?
FiniteElement::VALUE : FiniteElement::INTEGRAL;
// Parse the base order
const int p = atoi(strstr(name, "_P") + 2);
// Parse the mesh dimension
const int dim = atoi(strstr(name, "D") - 1);
// Parse basis type if specified
const char *t = strstr(name, "_T");
const int btype = t == NULL ? BasisType::GaussLegendre : atoi(t + 2);
// Parse the pyramid type if specified
const char *pyr = strstr(name, "Pyr");
const int ptype = pyr == NULL ? 1 : atoi(pyr + 3);
// Create collection
fec = new L2_FECollection(p, dim, btype, mtype, ptype);
fec = new L2_FECollection(atoi(name + 7), atoi(name + 3));
}
else if (!strncmp(name, "L2Int_T", 7))
{
fec = new L2_FECollection(atoi(name + 13), atoi(name + 9),
atoi(name + 7), FiniteElement::INTEGRAL);
}
else if (!strncmp(name, "L2Int_", 6))
{
fec = new L2_FECollection(atoi(name + 10), atoi(name + 6),
BasisType::GaussLegendre,
FiniteElement::INTEGRAL);
}
else if (!strncmp(name, "RT_Trace_", 9))
{
@@ -1739,10 +1709,9 @@ const int *RT1_3DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
const int pyr_type)
const int pyrtype)
: FiniteElementCollection(p)
, dim(dim)
, p_type(pyr_type)
{
MFEM_VERIFY(p >= 1, "H1_FECollection requires order >= 1.");
MFEM_VERIFY(dim >= 0 && dim <= 3, "H1_FECollection requires 0 <= dim <= 3.");
@@ -1755,14 +1724,7 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
{
case BasisType::GaussLobatto:
{
if (pyr_type == ScalarPyramid::DefaultType)
{
snprintf(h1_name, 32, "H1_%dD_P%d", dim, p);
}
else
{
snprintf(h1_name, 32, "H1_%dD_P%d_Pyr%d", dim, p, pyr_type);
}
snprintf(h1_name, 32, "H1_%dD_P%d", dim, p);
break;
}
case BasisType::Positive:
@@ -1948,11 +1910,11 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
H1_dof[Geometry::TETRAHEDRON] = (TriDof*pm3)/3;
H1_dof[Geometry::CUBE] = QuadDof*pm1;
H1_dof[Geometry::PRISM] = TriDof*pm1;
if (pyr_type == 0 || b_type == BasisType::Positive)
if (pyrtype == 0 || b_type == BasisType::Positive)
{
H1_dof[Geometry::PYRAMID] = pm2*pm1*(2*p-3)/6; // Bergot (JSC)
}
else if (pyr_type == 1)
else if (pyrtype == 1)
{
H1_dof[Geometry::PYRAMID] = pm1*pm1*pm1; // Fuentes
}
@@ -1973,15 +1935,13 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
new H1_TetrahedronElement(p, btype);
H1_Elements[Geometry::CUBE] = new H1_HexahedronElement(p, btype);
H1_Elements[Geometry::PRISM] = new H1_WedgeElement(p, btype);
if (pyr_type == 0)
if (pyrtype == 0)
{
H1_Elements[Geometry::PYRAMID] =
new H1_BergotPyramidElement(p, btype);
H1_Elements[Geometry::PYRAMID] = new H1_BergotPyramidElement(p, btype);
}
else
{
H1_Elements[Geometry::PYRAMID] =
new H1_FuentesPyramidElement(p, btype);
H1_Elements[Geometry::PYRAMID] = new H1_FuentesPyramidElement(p, btype);
}
}
@@ -2188,7 +2148,6 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
: FiniteElementCollection(p)
, dim(dim)
, m_type(map_type)
, p_type(pyr_type)
{
MFEM_VERIFY(p >= 0, "L2_FECollection requires order >= 0.");
@@ -2204,25 +2163,10 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
switch (btype)
{
case BasisType::GaussLegendre:
if (pyr_type == ScalarPyramid::DefaultType)
{
snprintf(d_name, 32, "%s_%dD_P%d", prefix, dim, p);
}
else
{
snprintf(d_name, 32, "%s_%dD_P%d_Pyr%d", prefix, dim, p, pyr_type);
}
snprintf(d_name, 32, "%s_%dD_P%d", prefix, dim, p);
break;
default:
if (pyr_type == ScalarPyramid::DefaultType)
{
snprintf(d_name, 32, "%s_T%d_%dD_P%d", prefix, btype, dim, p);
}
else
{
snprintf(d_name, 32, "%s_T%d_%dD_P%d_Pyr%d",
prefix, btype, dim, p, pyr_type);
}
snprintf(d_name, 32, "%s_T%d_%dD_P%d", prefix, btype, dim, p);
}
for (int g = 0; g < Geometry::NumGeom; g++)
@@ -2341,13 +2285,11 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
L2_Elements[Geometry::PRISM] = new L2_WedgeElement(p, btype);
if (pyr_type == 0)
{
L2_Elements[Geometry::PYRAMID] =
new L2_BergotPyramidElement(p, btype);
L2_Elements[Geometry::PYRAMID] = new L2_BergotPyramidElement(p, btype);
}
else
{
L2_Elements[Geometry::PYRAMID] =
new L2_FuentesPyramidElement(p, btype);
L2_Elements[Geometry::PYRAMID] = new L2_FuentesPyramidElement(p, btype);
}
}
+5 -37
View File
@@ -100,10 +100,6 @@ public:
return FiniteElementForGeometry(GeomType);
}
/** @brief Returns a collection of the trace elements.
@note The collection is owned by the caller and is NOT deleted in the
destructor. */
virtual FiniteElementCollection *GetTraceCollection() const;
virtual ~FiniteElementCollection();
@@ -254,14 +250,6 @@ public:
its GetOrder() method. */
virtual FiniteElementCollection *Clone(int p) const;
/** @brief Return the order parameter used to construct this collection.
* This differs from GetOrder() depending on the collection type. */
virtual int GetConstructorOrder() const
{
MFEM_ABORT("Collection " << Name() << " does not support GetConstructorOrder");
return -1;
}
protected:
const int base_p; ///< Order as returned by GetOrder().
@@ -290,7 +278,7 @@ protected:
class H1_FECollection : public FiniteElementCollection
{
protected:
int dim, b_type, p_type;
int dim, b_type;
char h1_name[32];
FiniteElement *H1_Elements[Geometry::NumGeom];
int H1_dof[Geometry::NumGeom];
@@ -299,7 +287,7 @@ protected:
public:
explicit H1_FECollection(const int p, const int dim = 3,
const int btype = BasisType::GaussLobatto,
const int pyr_type = ScalarPyramid::DefaultType);
const int pyrtype = 1);
const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const override;
@@ -324,10 +312,7 @@ public:
const int *GetDofMap(Geometry::Type GeomType, int p) const;
FiniteElementCollection *Clone(int p) const override
{ return new H1_FECollection(p, dim, b_type, p_type); }
int GetConstructorOrder() const override
{ return base_p; }
{ return new H1_FECollection(p, dim, b_type); }
virtual ~H1_FECollection();
};
@@ -358,10 +343,6 @@ class H1_Trace_FECollection : public H1_FECollection
public:
H1_Trace_FECollection(const int p, const int dim,
const int btype = BasisType::GaussLobatto);
FiniteElementCollection *Clone(int p) const override
{ return new H1_Trace_FECollection(p, dim+1, b_type); }
};
/// Arbitrary order "L2-conforming" discontinuous finite elements.
@@ -371,7 +352,6 @@ private:
int dim;
int b_type; // BasisType
int m_type; // map type
int p_type; // Pyramid type (0 -> Bergot, 1 -> Fuentes)
char d_name[32];
ScalarFiniteElement *L2_Elements[Geometry::NumGeom];
ScalarFiniteElement *Tr_Elements[Geometry::NumGeom];
@@ -384,7 +364,7 @@ public:
L2_FECollection(const int p, const int dim,
const int btype = BasisType::GaussLegendre,
const int map_type = FiniteElement::VALUE,
const int pyr_type = ScalarPyramid::DefaultType);
const int pyrtype = 1);
const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const override;
@@ -414,10 +394,7 @@ public:
int GetBasisType() const { return b_type; }
FiniteElementCollection *Clone(int p) const override
{ return new L2_FECollection(p, dim, b_type, m_type, p_type); }
int GetConstructorOrder() const override
{ return base_p; }
{ return new L2_FECollection(p, dim, b_type, m_type); }
virtual ~L2_FECollection();
};
@@ -479,9 +456,6 @@ public:
FiniteElementCollection *Clone(int p) const override
{ return new RT_FECollection(p, dim, cb_type, ob_type); }
int GetConstructorOrder() const override
{ return base_p-1; }
virtual ~RT_FECollection();
};
@@ -562,9 +536,6 @@ public:
FiniteElementCollection *Clone(int p) const override
{ return new ND_FECollection(p, dim, cb_type, ob_type); }
int GetConstructorOrder() const override
{ return dim>1 ? base_p : base_p+1; }
virtual ~ND_FECollection();
};
@@ -577,9 +548,6 @@ public:
ND_Trace_FECollection(const int p, const int dim,
const int cb_type = BasisType::GaussLobatto,
const int ob_type = BasisType::GaussLegendre);
FiniteElementCollection *Clone(int p) const override
{ return new ND_Trace_FECollection(p, dim+1, cb_type, ob_type); }
};
/// Arbitrary order 3D H(curl)-conforming Nedelec finite elements in 1D.
+2 -207
View File
@@ -22,8 +22,6 @@
#include <algorithm>
#include <cmath>
#include <cstdarg>
#include <unordered_map>
#include <unordered_set>
using namespace std;
@@ -4529,210 +4527,6 @@ void FiniteElementSpace
}
}
void FiniteElementSpace::GetBoundaryLoopEdgeDofs(
const Array<int> &boundary_element_indices,
Array<int> &boundary_edge_dofs,
Array<int> *dof_edges,
Array<int> *dof_boundary_elements) const
{
MFEM_VERIFY(mesh->Dimension() >= 2,
"GetBoundaryLoopEdgeDofs requires 2D or 3D meshes to find edge objects");
boundary_edge_dofs.SetSize(0);
if (dof_edges) { dof_edges->SetSize(0); }
if (dof_boundary_elements) { dof_boundary_elements->SetSize(0); }
// A DOF that appears in exactly one selected boundary element lies on the
// bounding loop; one appearing in two or more is interior to the boundary
// region and is dropped. Count occurrences of each DOF (using scratch maps,
// exposed only as parallel-indexed Array<int> below) and record, on first
// sight, the local edge and boundary element carrying it.
//
// The count is over GetEdgeDofs, which returns endpoint vertex DOFs as well
// as edge-interior DOFs (relevant for collections such as ND_R2D that carry
// vertex DOFs). Edge-interior DOFs occur once per edge, so the count mainly
// resolves vertex DOFs: a vertex shared by several elements is interior and
// dropped, while a genuine loop-corner (open-curve endpoint) vertex is kept.
// This is why we count GetEdgeDofs rather than collecting GetEdgeInteriorDofs,
// which would omit the endpoint vertex DOFs the method is documented to keep.
// The 3D removal criterion (any edge in two or more faces) matches the
// parallel version rather than a parity toggle.
std::unordered_map<int, int> dof_count, dof_edge, dof_belem;
Array<int> edge_dofs, edges, edge_orientations;
const int dim = mesh->Dimension();
for (int i = 0; i < boundary_element_indices.Size(); ++i)
{
const int boundary_element_idx = boundary_element_indices[i];
std::unordered_set<int> boundary_element_dofs;
if (dim == 3)
{
// Boundary elements are 2D faces; extract their 1D edges.
int face_index, face_orientation;
mesh->GetBdrElementFace(boundary_element_idx, &face_index,
&face_orientation);
mesh->GetFaceEdges(face_index, edges, edge_orientations);
}
else
{
// Boundary elements are 1D segments, each being a single edge.
mesh->GetBdrElementEdges(boundary_element_idx, edges, edge_orientations);
MFEM_VERIFY(edges.Size() == 1,
"2D boundary element should have exactly one edge");
}
for (int j = 0; j < edges.Size(); ++j)
{
GetEdgeDofs(edges[j], edge_dofs);
for (int k = 0; k < edge_dofs.Size(); ++k)
{
const int dof = edge_dofs[k];
// Count each DOF once per boundary element and record metadata the
// first time it is seen, so H1 DOFs shared by multiple edges of the
// same element are not double counted.
if (boundary_element_dofs.insert(dof).second &&
dof_count[dof]++ == 0)
{
dof_edge[dof] = edges[j];
dof_belem[dof] = boundary_element_idx;
}
}
}
}
// Emit the DOFs seen in exactly one selected boundary element, in a
// deterministic (increasing DOF index) order shared by all output arrays.
std::vector<int> kept;
kept.reserve(dof_count.size());
for (const auto &[dof, count] : dof_count)
{
if (count == 1) { kept.push_back(dof); }
}
std::sort(kept.begin(), kept.end());
boundary_edge_dofs.Reserve(static_cast<int>(kept.size()));
if (dof_edges) { dof_edges->Reserve(static_cast<int>(kept.size())); }
if (dof_boundary_elements)
{
dof_boundary_elements->Reserve(static_cast<int>(kept.size()));
}
for (int dof : kept)
{
boundary_edge_dofs.Append(dof);
if (dof_edges) { dof_edges->Append(dof_edge[dof]); }
if (dof_boundary_elements) { dof_boundary_elements->Append(dof_belem[dof]); }
}
}
void FiniteElementSpace::GetBoundaryElementsByAttribute(
const Array<int> &bdr_attrs,
std::vector<Array<int>> &attr_to_elements)
{
// One (initially empty) list of boundary elements per requested attribute,
// indexed to match bdr_attrs.
attr_to_elements.assign(bdr_attrs.Size(), Array<int>());
// Map attribute value -> position in bdr_attrs for quick lookup.
std::unordered_map<int, int> attr_to_index;
for (int i = 0; i < bdr_attrs.Size(); ++i)
{
attr_to_index[bdr_attrs[i]] = i;
}
// Bucket boundary elements by their attribute.
for (int i = 0; i < mesh->GetNBE(); ++i)
{
int attr = mesh->GetBdrElement(i)->GetAttribute();
auto it = attr_to_index.find(attr);
if (it != attr_to_index.end())
{
attr_to_elements[it->second].Append(i);
}
}
}
void FiniteElementSpace::GetBoundaryElementsByAttribute(int bdr_attr,
Array<int> &boundary_elements)
{
boundary_elements.SetSize(0);
for (int i = 0; i < mesh->GetNBE(); ++i)
{
if (mesh->GetBdrElement(i)->GetAttribute() == bdr_attr)
{
boundary_elements.Append(i);
}
}
}
void FiniteElementSpace::ComputeLoopEdgeOrientations(
const Array<int> &dof_edges,
const Array<int> &dof_boundary_elements,
const Vector &loop_normal,
Array<int> &dof_orientations) const
{
MFEM_VERIFY(dof_edges.Size() == dof_boundary_elements.Size(),
"dof_edges and dof_boundary_elements must be parallel-indexed");
const int ndof = dof_edges.Size();
dof_orientations.SetSize(ndof);
Array<int> edge_verts, bdr_elem_verts;
Vector edge_vec(3), to_edge_vec(3), cross_product(3);
for (int i = 0; i < ndof; i++)
{
const int edge_id = dof_edges[i];
const int bdr_elem_idx = dof_boundary_elements[i];
// Get edge vertices
mesh->GetEdgeVertices(edge_id, edge_verts);
const real_t *v0 = mesh->GetVertex(edge_verts[0]);
const real_t *v1 = mesh->GetVertex(edge_verts[1]);
// Get boundary element vertices
mesh->GetBdrElement(bdr_elem_idx)->GetVertices(bdr_elem_verts);
// Find the third vertex (not part of the edge)
int third_vertex = -1;
for (int j = 0; j < bdr_elem_verts.Size(); j++)
{
int v = bdr_elem_verts[j];
if (v != edge_verts[0] && v != edge_verts[1])
{
third_vertex = v;
break;
}
}
if (third_vertex == -1)
{
MFEM_ABORT("Boundary element " << bdr_elem_idx << " has only 2 vertices, "
"but 3D boundary elements must have at least 3 vertices");
}
const real_t *v2 = mesh->GetVertex(third_vertex);
// Edge vector
for (int j = 0; j < 3; j++) { edge_vec[j] = v1[j] - v0[j]; }
// Vector from third vertex to edge (use edge midpoint)
for (int j = 0; j < 3; j++)
{
real_t edge_midpoint = (v0[j] + v1[j]) * 0.5;
to_edge_vec[j] = edge_midpoint - v2[j];
}
// Cross product: to_edge × edge
to_edge_vec.cross3D(edge_vec, cross_product);
// Check alignment with loop normal
real_t dot_product = cross_product * loop_normal;
dof_orientations[i] = (dot_product > 0) ? 1 : -1;
}
}
FiniteElementCollection *FiniteElementSpace::Load(Mesh *m, std::istream &input)
{
string buff;
@@ -4837,8 +4631,9 @@ FiniteElementCollection *FiniteElementSpace::Load(Mesh *m, std::istream &input)
ElementDofOrdering GetEVectorOrdering(const FiniteElementSpace& fes)
{
return (UsesTensorBasis(fes) || fes.UsesRaggedTensorBasis()) ?
return UsesTensorBasis(fes)?
ElementDofOrdering::LEXICOGRAPHIC:
ElementDofOrdering::NATIVE;
}
} // namespace mfem
-87
View File
@@ -22,7 +22,6 @@
#include "restriction.hpp"
#include <iostream>
#include <unordered_map>
#include <vector>
namespace mfem
{
@@ -1390,80 +1389,6 @@ public:
virtual void GetExteriorTrueDofs(Array<int> &exterior_dofs,
int component = -1) const;
/** @brief Extract the edge degrees of freedom of a boundary "loop".
Here a "loop" is the set of boundary edges bounding the region covered by
@a boundary_element_indices: in 3D the outer edges of a patch of boundary
faces, in 2D the boundary segments themselves. An edge that is shared by
two (or more) of the selected boundary elements is interior to that region
rather than on its bounding loop, so its DOFs are excluded from the result.
This exclusion of interior DOFs is the defining feature of the method.
The three output arrays share a single indexing: for each valid index @a i,
@a dof_edges[i] and @a dof_boundary_elements[i] describe the DOF
@a boundary_edge_dofs[i].
@param[in] boundary_element_indices Boundary element indices spanning a
boundary surface (3D) or curve (2D).
@param[out] boundary_edge_dofs Local DOF indices on the boundary loop.
@param[out] dof_edges Optional; local edge index carrying each DOF.
@param[out] dof_boundary_elements Optional; a boundary element containing
each DOF.
@note In 3D the edge DOFs are extracted from the 1D edges of the 2D
boundary faces; in 2D they come directly from the 1D boundary segments, so
@a dof_edges then holds the boundary element (segment) edge indices.
@note This method uses GetEdgeDofs internally, which returns both vertex and
edge DOFs. Standard Nédélec elements (ND_FECollection) have no vertex DOFs,
so only genuine edge DOFs appear. Collections that carry vertex DOFs (e.g.
ND_R2D_FECollection) additionally contribute the vertex DOFs at loop
endpoints.
@note This is the serial version. For parallel meshes, use the parallel
version in ParFiniteElementSpace which handles processor boundaries
correctly.
@note Requires a 2D or 3D mesh to identify edge objects. The method will
assert if called on 1D meshes.
@note Only supports conforming meshes; non-conforming meshes are not
supported. */
void GetBoundaryLoopEdgeDofs(const Array<int> &boundary_element_indices,
Array<int> &boundary_edge_dofs,
Array<int> *dof_edges = nullptr,
Array<int> *dof_boundary_elements = nullptr) const;
/** @brief Get boundary elements grouped by attribute.
For each attribute in @a bdr_attrs, collect the indices of all boundary
elements carrying that attribute. The result is indexed to match
@a bdr_attrs: @a attr_to_elements[i] holds the boundary elements with
attribute @a bdr_attrs[i]. */
void GetBoundaryElementsByAttribute(
const Array<int> &bdr_attrs,
std::vector<Array<int>> &attr_to_elements);
/** @brief Get all boundary elements with a specific attribute. */
void GetBoundaryElementsByAttribute(int bdr_attr,
Array<int> &boundary_elements);
/** @brief Compute edge orientations relative to a boundary loop direction.
For each boundary-loop DOF described by @a dof_edges and
@a dof_boundary_elements (see GetBoundaryLoopEdgeDofs), determine whether
the carrying edge is
traversed in the direction consistent with @a loop_normal, following the
right-hand rule. Intended for 3D meshes.
@param[in] dof_edges Local edge index of each DOF (parallel-indexed with
the boundary_edge_dofs output of GetBoundaryLoopEdgeDofs).
@param[in] dof_boundary_elements A boundary element containing each DOF,
using the same indexing as @a dof_edges.
@param[in] loop_normal Normal vector defining the loop orientation.
@param[out] dof_orientations Orientation (+1 or -1) for each DOF, using the
same indexing as @a dof_edges. */
void ComputeLoopEdgeOrientations(const Array<int> &dof_edges,
const Array<int> &dof_boundary_elements,
const Vector &loop_normal,
Array<int> &dof_orientations) const;
/// Convert a Boolean marker array to a list containing all marked indices.
static void MarkerToList(const Array<int> &marker, Array<int> &list);
@@ -1589,18 +1514,6 @@ public:
return dynamic_cast<const L2_FECollection*>(fec) != NULL;
}
/// @brief Return true if the mesh contains only one topology, the elements are
/// all triangles or tetrahedrons, and the elements are ragged tensor elements
/// i.e. Bernstein/positive basis.
bool UsesRaggedTensorBasis() const
{
bool simplex = this->GetMesh()->IsSimplexMesh();
bool positive =
dynamic_cast<const mfem::H1Pos_TriangleElement *>(this->GetTypicalFE()) ||
dynamic_cast<const mfem::H1Pos_TetrahedronElement *>(this->GetTypicalFE());
return simplex && positive;
}
/** In variable-order spaces on nonconforming (NC) meshes, this function
controls whether strict conformity is enforced in cases where coarse
edges/faces have higher polynomial order than their fine NC neighbors.
+24 -167
View File
@@ -2256,104 +2256,6 @@ void GridFunction::AccumulateAndCountBdrTangentValues(
}
}
void GridFunction::AccumulateAndCountTraceValues(
Coefficient *coeff[], VectorCoefficient *vcoeff,
Array<int> &values_counter)
{
if (vcoeff)
{
MFEM_VERIFY(fes->GetVDim() == vcoeff->GetVDim(),
"vcoeff vdim != fes VDim");
MFEM_VERIFY(fes->GetTypicalTraceElement()->GetMapType() ==
FiniteElement::VALUE &&
fes->GetTypicalTraceElement()->GetRangeType() ==
FiniteElement::SCALAR,
"Can only call ProjectTraceCoefficient on scalar value-type "
"trace elements. "
"Use ProjectTraceCoefficientNormal for RT and "
"ProjectTraceCoefficientTangent for ND finite elements.");
}
Array<int> vdofs;
Vector vc;
values_counter.SetSize(Size());
values_counter = 0;
const int vdim = fes->GetVDim();
HostReadWrite();
for (int i = 0; i < fes->GetMesh()->GetNumFaces(); i++)
{
const FiniteElement *fe = fes->GetFaceElement(i);
const int fdof = fe->GetDof();
ElementTransformation *transf = fes->GetMesh()->GetFaceTransformation(i);
const IntegrationRule &ir = fe->GetNodes();
fes->GetFaceVDofs(i, vdofs);
for (int j = 0; j < fdof; j++)
{
const IntegrationPoint &ip = ir.IntPoint(j);
transf->SetIntPoint(&ip);
if (vcoeff) { vcoeff->Eval(vc, *transf, ip); }
for (int d = 0; d < vdim; d++)
{
if (!vcoeff && !coeff[d]) { continue; }
real_t val = vcoeff ? vc(d) : coeff[d]->Eval(*transf, ip);
int ind = vdofs[fdof*d+j];
if ( ind < 0 )
{
val = -val, ind = -1-ind;
}
if (++values_counter[ind] == 1)
{
(*this)(ind) = val;
}
else
{
(*this)(ind) += val;
}
}
}
}
}
void GridFunction::AccumulateAndCountTraceTangentValues(
VectorCoefficient &vcoeff, Array<int> &values_counter)
{
MFEM_VERIFY(fes->GetVDim() == 1, "fespace VDim != 1");
MFEM_VERIFY(fes->GetTypicalTraceElement()
->GetRangeType() == FiniteElement::VECTOR &&
fes->GetTypicalTraceElement()
->GetMapType() == FiniteElement::H_CURL,
"Not an ND FE space!");
MFEM_VERIFY(fes->GetTypicalTraceElement()->GetPhysRangeDim(
fes->GetMesh()->SpaceDimension()) == vcoeff.GetVDim(),
"vcoeff vdim != PhysRangeDim");
const FiniteElement *fe;
ElementTransformation *T;
Array<int> dofs;
Vector lvec;
values_counter.SetSize(Size());
values_counter = 0;
HostReadWrite();
for (int i = 0; i < fes->GetMesh()->GetNumFaces(); i++)
{
fe = fes->GetFaceElement(i);
T = fes->GetMesh()->GetFaceTransformation(i);
fes->GetFaceVDofs(i, dofs);
lvec.SetSize(fe->GetDof());
fe->Project(vcoeff, *T, lvec);
accumulate_dofs(dofs, lvec, *this, values_counter);
}
}
void GridFunction::ComputeMeans(AvgType type, Array<int> &zones_per_vdof)
{
switch (type)
@@ -2796,74 +2698,6 @@ void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff,
}
}
void GridFunction::ProjectTraceCoefficient(Coefficient *coeff[])
{
Array<int> values_counter;
AccumulateAndCountTraceValues(coeff, NULL, values_counter);
ComputeMeans(ARITHMETIC, values_counter);
}
void GridFunction::ProjectTraceCoefficient(Coefficient &coeff)
{
MFEM_VERIFY(FESpace()->GetVDim() == 1, "ProjectTraceCoefficient(Coefficient&)"
"is only valid for scalar GridFunction");
Coefficient *coeff_p = &coeff;
ProjectTraceCoefficient(&coeff_p);
}
void GridFunction::ProjectTraceCoefficient(VectorCoefficient &vcoeff)
{
MFEM_VERIFY(FESpace()->GetVDim() == vcoeff.GetVDim(),
"Incompatible vcoeff vdim and fes vdim");
Array<int> values_counter;
AccumulateAndCountTraceValues(NULL, &vcoeff, values_counter);
ComputeMeans(ARITHMETIC, values_counter);
}
void GridFunction::ProjectTraceCoefficientNormal(VectorCoefficient &vcoeff)
{
MFEM_VERIFY(fes->GetVDim() == 1, "fespace VDim != 1");
MFEM_VERIFY(fes->GetTypicalTraceElement()->GetRangeType() ==
FiniteElement::SCALAR &&
fes->GetTypicalTraceElement()->GetMapType() ==
FiniteElement::INTEGRAL, "Not an RT FE space!");
MFEM_VERIFY(vcoeff.GetVDim() == fes->GetMesh()->SpaceDimension(),
"vcoeff vdim (" << vcoeff.GetVDim()
<< ") != SpaceDimension ("
<< fes->GetMesh()->SpaceDimension() << ")");
const FiniteElement *fe;
ElementTransformation *T;
Array<int> dofs;
int dim = vcoeff.GetVDim();
Vector vc(dim), nor(dim), lvec;
for (int i = 0; i < fes->GetMesh()->GetNumFaces(); i++)
{
fe = fes->GetFaceElement(i);
T = fes->GetMesh()->GetFaceTransformation(i);
const IntegrationRule &ir = fe->GetNodes();
lvec.SetSize(fe->GetDof());
for (int j = 0; j < ir.GetNPoints(); j++)
{
const IntegrationPoint &ip = ir.IntPoint(j);
T->SetIntPoint(&ip);
vcoeff.Eval(vc, *T, ip);
CalcOrtho(T->Jacobian(), nor);
lvec(j) = (vc * nor);
}
fes->GetFaceVDofs(i, dofs);
SetSubVector(dofs, lvec);
}
}
void GridFunction::ProjectTraceCoefficientTangent(VectorCoefficient &vcoeff)
{
Array<int> values_counter;
AccumulateAndCountTraceTangentValues(vcoeff, values_counter);
ComputeMeans(ARITHMETIC, values_counter);
}
void GridFunction::ProjectCoefficientGlobalL2(VectorCoefficient &vcoeff,
real_t rtol, int iter)
{
@@ -5418,6 +5252,30 @@ void GridFunction::GetElementBounds(const PLBound &plb,
Vector &lower, Vector &upper,
const int vdim) const
{
if (UseDevice() && Device::Allows(Backend::DEVICE_MASK) &&
plb.GetBasisType() != BasisType::Positive &&
UsesTensorBasis(*fes))
{
const FiniteElement &fe = *fes->GetTypicalFE();
const int rdim = fe.GetDim();
const int fes_dim = fes->GetVDim();
const int nel = fes->GetNE();
const int nd = fe.GetDof();
Vector e_vec(nd*fes_dim*nel, Device::GetDeviceMemoryType());
e_vec.UseDevice(true);
const ElementRestrictionOperator *elem_restr =
fes->GetElementRestriction(ElementDofOrdering::LEXICOGRAPHIC);
MFEM_VERIFY(elem_restr != nullptr,
"Element restriction is required for device bounds.");
elem_restr->Mult(*this, e_vec);
plb.GetElementBoundsKernel(rdim, fes_dim, e_vec, lower, upper, vdim);
lower.HostRead();
upper.HostRead();
return;
}
int nel = fes->GetNE();
int fes_dim = fes->GetVDim();
lower.SetSize(nel*(vdim > 0 ? 1 :fes_dim));
@@ -5452,7 +5310,6 @@ PLBound GridFunction::GetBounds(Vector &lower, Vector &upper,
{
int max_order = fes->GetMaxElementOrder();
PLBound plb(fes, ref_factor*(max_order+1));
Vector lel, uel;
GetElementBounds(plb, lel, uel, vdim);
+3 -27
View File
@@ -578,13 +578,6 @@ protected:
const Array<int> &bdr_attr,
Array<int> &values_counter);
void AccumulateAndCountTraceValues(Coefficient *coeff[],
VectorCoefficient *vcoeff,
Array<int> &values_counter);
void AccumulateAndCountTraceTangentValues(VectorCoefficient &vcoeff,
Array<int> &values_counter);
// Complete the computation of averages; called e.g. after
// AccumulateAndCountZones().
void ComputeMeans(AvgType type, Array<int> &zones_per_vdof);
@@ -670,23 +663,6 @@ public:
ProjectBdrCoefficient(&coeff_p, attr);
}
/// Project a Coefficient on a GridFunction defined on H1 trace space
void ProjectTraceCoefficient(Coefficient *coeff[]);
void ProjectTraceCoefficient(Coefficient &coeff);
/** @brief Project a VectorCoefficient @a vcoeff on a GridFunction
defined on a Vector H1 trace space. Note that this also works
for a scalar H1 trace space, where only the first component of
@a vcoeff is used. */
void ProjectTraceCoefficient(VectorCoefficient &vcoeff);
/** @brief Project a VectorCoefficient on a GridFunction
defined on an RT trace space */
void ProjectTraceCoefficientNormal(VectorCoefficient &vcoeff);
/** @brief Project a VectorCoefficient on a GridFunction
defined on an ND trace space */
void ProjectTraceCoefficientTangent(VectorCoefficient &vcoeff);
/** @brief Project a VectorCoefficient on the GridFunction, modifying only
DOFs on the boundary associated with the boundary attributes marked in
the @a attr array. */
@@ -1791,8 +1767,8 @@ public:
const int ref_factor=1, const int vdim=-1) const;
/// Computes the \ref PLBound for the gridfunction with number of control
/// points based on @a ref_factor, and returns the bounds for each element
/// ordered byNODES:
/// points based on \p ref_factor, and returns the bounds for each element
/// ordered byNodes:
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}. We also return the
/// PLBound object used to compute the bounds.
@@ -1826,7 +1802,7 @@ public:
const int vdim = -1) const;
/// Compute bounds on the grid function for all the elements. The bounds
/// are returned in @b lower and @b upper, ordered byNODES:
/// are returned in @b lower and @b upper, ordered byNodes:
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}
void GetElementBounds(const PLBound &plb, Vector &lower, Vector &upper,
+384 -3128
View File
File diff suppressed because it is too large Load Diff
+103 -494
View File
@@ -12,9 +12,6 @@
#ifndef MFEM_GSLIB
#define MFEM_GSLIB
#include <map>
#include <vector>
#include "../config/config.hpp"
#ifdef MFEM_USE_MPI
#include "pgridfunc.hpp"
@@ -24,45 +21,6 @@
#ifdef MFEM_USE_GSLIB
/* gslib license and copyright statement for code adapted from gslib:
Copyright (c) 2008-2024, UCHICAGO ARGONNE, LLC.
The UChicago Argonne, LLC as Operator of Argonne National
Laboratory holds copyright in the Software. The copyright holder
reserves all rights except those expressly granted to licensees,
and U.S. Government license rights.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the disclaimer below.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the disclaimer (as noted below)
in the documentation and/or other materials provided with the
distribution.
3. Neither the name of ANL nor the names of its contributors
may be used to endorse or promote products derived from this software
without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL
UCHICAGO ARGONNE, LLC, THE U.S. DEPARTMENT OF
ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
namespace gslib
{
struct comm;
@@ -122,18 +80,13 @@ protected:
// IntegrationRules for simplex->Quad/Hex and to project to p_max in-case of
// p-refinement.
Array<IntegrationRule *> ir_split;
/// Integration rules built at the field polynomial order (only for surface
/// meshes when mesh order is not the same as gridfunction order).
Array<IntegrationRule *> ir_split_sol;
/// Order at which #ir_split_sol was built; -1 means not built.
int ir_split_sol_order = -1;
Array<FiniteElementSpace *> fes_rst_map; //FESpaces to map Quad/Hex->Simplex
Array<GridFunction *> gf_rst_map; // GridFunctions to map Quad/Hex->Simplex
FiniteElementCollection *fec_map_lin;
void *fdataD;
struct gslib::crystal *cr; // gslib's internal data
struct gslib::comm *gsl_comm; // gslib's internal data
int dim, spacedim, points_cnt; // mesh dimension and number of points
int dim, points_cnt; // mesh dimension and number of points
Array<unsigned int> gsl_code, gsl_proc, gsl_elem, gsl_mfem_elem;
Vector gsl_mesh, gsl_ref, gsl_dist, gsl_mfem_ref;
Array<unsigned int> recv_proc, recv_index; // data for custom interpolation
@@ -142,8 +95,6 @@ protected:
AvgType avgtype; // average type used for L2 functions
Array<int> split_element_map;
Array<int> split_element_index;
// Geometry::Type (as int) of the original element for each split quad.
Array<int> split_element_geom;
int NE_split_total; // total number of elements after mesh splitting
int mesh_points_cnt; // number of mesh nodes
// Tolerance to ignore points found beyond the mesh boundary.
@@ -151,235 +102,111 @@ protected:
double bdr_tol;
// Use CPU functions for Mesh/GridFunction on device for gslib1.0.7
bool gpu_to_cpu_fallback = false;
// Check if a point is inside the oriented bounding box of an
// element before the Newton iteration.
// Note: only used in MFEM implementation (not in gslib) which currently
// supports GPU kernels for area meshes in 2D, volume meshes in 3D,
// and surface meshes in 1D/2D/3D.
bool obb_check = true;
// Device specific data used for FindPoints
struct DEV_STRUCT
struct
{
bool setup_device = false;
bool find_device = false;
int local_hash_size, dof1d, dof1d_sol, lh_nx, gh_nx;
int local_hash_size, dof1d, dof1d_sol, h_o_size, h_nx;
double newt_tol; // Tolerance specified during setup for Newton solve
struct gslib::crystal *cr;
struct gslib::hash_data_3 *hash3;
struct gslib::hash_data_2 *hash2;
mutable Vector bb, wtend, gll1d, lagcoeff, gll1d_sol, lagcoeff_sol;
mutable Array<unsigned int> lh_offset, gh_offset;
mutable Vector lh_min, lh_fac, gh_min, gh_fac;
// Tolerance to mark points found on the surface as CODE_INTERNAL
// or CODE_BORDER. This is needed because we cannot only use reference
// space coordinates to determine if a point is located inside the
// element or not.
mutable double surf_dist_tol;
mutable Array<unsigned int> loc_hash_offset;
mutable Vector loc_hash_min, loc_hash_fac;
} DEV;
// Helper function to setup and free gslib's crystal router.
void SetupCrystal(); // Called inside Setup and SetupSurf_base
void FreeCrystal(); // Called inside FreeData
/// Use GSLIB for communication and interpolation. Updates field_out on
/// host.
/// Use GSLIB for communication and interpolation
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/// Uses GSLIB Crystal Router for communication followed by MFEM's
/// interpolation functions. Updates field_out on host.
/// interpolation functions
virtual void InterpolateGeneral(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering);
/** @brief Since GSLIB is designed to work with quads/hexes, we split every
* triangle/tet/prism/pyramid element into quads/hexes. */
/// Since GSLIB is designed to work with quads/hexes, we split every
/// triangle/tet/prism/pyramid element into quads/hexes.
virtual void SetupSplitMeshes();
/** @brief Setup integration points that will be used to interpolate the
* nodal location at points expected by GSLIB. */
/// Setup integration points that will be used to interpolate the nodal
/// location at points expected by GSLIB.
virtual void SetupIntegrationRuleForSplitMesh(Mesh *mesh,
IntegrationRule *irule,
int order);
/** @brief Build integration rules at the given @a order for each split mesh
* and store them in @a ir_out. Requires that \ref SetupSplitMeshes has
* already been called. */
virtual void SetupIntegrationRules(const int order,
Array<IntegrationRule *> &ir_out);
/** @brief Helper function that calls \ref SetupSplitMeshes and
* \ref SetupIntegrationRules. */
/// Helper function that calls \ref SetupSplitMeshes and
/// \ref SetupIntegrationRuleForSplitMesh.
virtual void SetupSplitMeshesAndIntegrationRules(const int order);
/** @brief Get GridFunction value at the points expected by GSLIB.
* @param[in] gf_in Grid function to evaluate.
* @param[out] node_vals Output values.
* @param[in] ir_in If non-null, use these rules instead of #ir_split.
* @param[in] by_element If true, output has element-major layout
* [nel][vdim][ndofs]; otherwise component-major
* layout [vdim][total_pts]. */
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals,
const Array<IntegrationRule *> *ir_in = nullptr,
bool by_element = false) const;
/// Get GridFunction value at the points expected by GSLIB.
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals) const;
/** @brief Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For
* simplices, find the original element number (that was split into
* micro quads/hexes) during the setup phase. */
/// Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For simplices,
/// find the original element number (that was split into micro quads/hexes)
/// during the setup phase.
virtual void MapRefPosAndElemIndices();
/// FindPoints locally on device for 3D.
// Device functions
// FindPoints locally on device for 3D.
void FindPointsLocal3(const Vector &point_pos, int point_pos_ordering,
Array<unsigned int> &gsl_code_dev_l,
Array<unsigned int> &gsl_elem_dev_l, Vector &gsl_ref_l,
Vector &gsl_dist_l, int npt);
/// FindPoints locally on device for 2D.
// FindPoints locally on device for 2D.
void FindPointsLocal2(const Vector &point_pos, int point_pos_ordering,
Array<unsigned int> &gsl_code_dev_l,
Array<unsigned int> &gsl_elem_dev_l, Vector &gsl_ref_l,
Vector &gsl_dist_l, int npt);
/// FindPoints locally on device for 3D surface elements.
void FindPointsSurfLocal3(const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &gsl_code_dev_l,
Array<unsigned int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &gsl_dist_l,
int npt);
/// FindPoints locally on device for 3D edge elements.
void FindPointsEdgeLocal3(const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &gsl_code_dev_l,
Array<unsigned int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &gsl_dist_l,
int npt);
/// FindPoints locally on device for 2D edge elements.
void FindPointsEdgeLocal2(const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &gsl_code_dev_l,
Array<unsigned int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &gsl_dist_l,
int npt);
/// Interpolate on device for 3D.
// Interpolate on device for 3D.
void InterpolateLocal3(const Vector &field_in,
Array<int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1dsol);
/// Interpolate on device for 2D.
int nel, int dof1dsol);
// Interpolate on device for 2D.
void InterpolateLocal2(const Vector &field_in,
Array<int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1dsol);
int nel, int dof1dsol);
/// Interpolate on device for 1D.
void InterpolateLocal1(const Vector &field_in,
Array<int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp, int dof1dsol);
/// Prepare data for device execution for volume meshes.
// Prepare data for device functions.
void SetupDevice();
/** @brief Searches positions given in physical space by @a point_pos.
/** Searches positions given in physical space by @a point_pos.
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering. */
void FindPointsOnDevice(const Vector &point_pos,
const int point_pos_ordering = Ordering::byNODES);
/** @brief Interpolation of field values at prescribed reference space
* positions.
* @param[in] field_in_evec E-vector of grid function to be interpolated.
* Assumed ordering is NDOFSxVDIMxNEL
* @param[in] nel Number of elements in the mesh.
* @param[in] ncomp Number of components in the field.
* @param[in] dof1dsol Number of degrees of freedom in each reference
* space direction.
* @param[in] ordering Ordering of the out field values: byNodes/byVDIM
*
* @param[out] field_out Interpolated values. For points that are not
* found the value is set to
* #default_interp_value. */
/** Interpolation of field values at prescribed reference space positions.
@param[in] field_in_evec E-vector of grid function to be interpolated.
Assumed ordering is NDOFSxVDIMxNEL
@param[in] nel Number of elements in the mesh.
@param[in] ncomp Number of components in the field.
@param[in] dof1dsol Number of degrees of freedom in each reference
space direction.
@param[in] ordering Ordering of the out field values: byNodes/byVDIM
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value. */
void InterpolateOnDevice(const Vector &field_in_evec, Vector &field_out,
const int nel, const int ncomp,
const int dof1dsol, const int ordering);
/** @brief Interpolation of field values at prescribed reference space
* positions for surface meshes. */
void InterpolateSurfBase(const Vector &field_in, Vector &field_out,
const int nel, const int ncomp,
const int dof1dsol, const int field_out_ordering);
/// Preprocess 2D surface mesh needed for FindPoints.
void findptsedge_setup_2(DEV_STRUCT &devs,
const double *const elx[2],
const unsigned n,
const unsigned int nel,
const unsigned m,
const double bbox_rel_size_inc,
const unsigned int local_hash_size,
const unsigned int global_hash_size,
const Vector *aabb_sz_inc);
/// Preprocess 3D surface mesh needed for FindPoints.
void findptssurf_setup_3(DEV_STRUCT &devs,
const double *const elx[3],
const unsigned n,
const unsigned int nel,
const unsigned m,
const double bbox_rel_size_inc,
const unsigned int local_hash_size,
const unsigned int global_hash_size,
const int rD,
const Vector *aabb_sz_inc);
/** @brief Shared implementation for the public surface-setup methods.
*
* @details Initializes the surface-search data structures, builds the
* split-element representation expected by gslib, and constructs the
* element bounding boxes used by the MFEM surface kernels.
*
* If @a aabb_sz_inc is null, the setup stores the default oriented
* bounding boxes and uses @a bbox_rel_size_inc as their relative size
* increase factor.
*
* If @a aabb_sz_inc is non-null, the setup stores axis-aligned bounding
* boxes only, applies the requested absolute AABB expansion in each
* physical direction, and adjusts the tolerance @a bdr_tol so points
* found in the expanded region are classified as border points.
*
* @param[in] m Input surface mesh.
* @param[in] bbox_rel_size_inc Relative size increase applied when
* expanding each element bounding box during
* setup.
* @param[in] aabb_sz_inc Optional total absolute AABB expansion
* applied to the stored axis-aligned
* bounding boxes after construction.
* @param[in] newt_tol Newton tolerance for the point-search
* kernels.
*/
void SetupSurf_Base(Mesh &m,
const double bbox_rel_size_inc,
const Vector *aabb_sz_inc,
const double newt_tol);
public:
/// Serial constructor
FindPointsGSLIB();
/// Serial constructor + setup with given Mesh (see \ref Setup)
FindPointsGSLIB(Mesh &mesh_in, const double bbox_rel_size_inc = 0.1,
FindPointsGSLIB(Mesh &mesh_in, const double bb_t = 0.1,
const double newt_tol = 1.0e-12,
const int npt_max = 256);
@@ -388,7 +215,7 @@ public:
FindPointsGSLIB(MPI_Comm comm_);
/// Constructor + setup with given ParMesh (see \ref Setup)
FindPointsGSLIB(ParMesh &mesh_in, const double bbox_rel_size_inc = 0.1,
FindPointsGSLIB(ParMesh &mesh_in, const double bb_t = 0.1,
const double newt_tol = 1.0e-12,
const int npt_max = 256);
#endif
@@ -397,72 +224,25 @@ public:
FindPointsGSLIB(const FindPointsGSLIB&) = delete;
FindPointsGSLIB& operator=(const FindPointsGSLIB&) = delete;
/** @brief Preprocess the internal mesh in gslib.
@details Initializes the internal mesh in gslib, by sending the
positions of the Gauss-Lobatto nodes of the input Mesh object \p m.
/** Initializes the internal mesh in gslib, by sending the positions of the
Gauss-Lobatto nodes of the input Mesh object \p m.
Note: not tested with periodic (L2).
Note: the input mesh \p m must have Nodes set.
@param[in] m Input mesh.
@param[in] bbox_rel_size_inc (Optional) Relative size increase applied
when expanding each element bounding box.
@param[in] newt_tol (Optional) Newton tolerance for the gslib
search methods.
@param[in] npt_max (Optional) Number of points for
simultaneous iteration. This alters
performance and memory footprint.
*/
void Setup(Mesh &m, const double bbox_rel_size_inc = 0.1,
const double newt_tol = 1.0e-12,
@param[in] m Input mesh.
@param[in] bb_t (Optional) Relative size of bounding box around
each element.
@param[in] newt_tol (Optional) Newton tolerance for the gslib
search methods.
@param[in] npt_max (Optional) Number of points for simultaneous
iteration. This alters performance and
memory footprint.*/
void Setup(Mesh &m, const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
/// Preprocess the surface mesh to compute data for FindPoints.
void SetupSurf(Mesh &m,
const double bbox_rel_size_inc = 0.1,
const double newt_tol = 1.0e-12);
/** @brief Preprocess the surface mesh to compute data for FindPoints using
* absolute AABB expansion.
*
* @details This method computes only axis-aligned bounding boxes and
* increases their total length by a user-specified amount in each
* physical direction. The absolute AABB expansion is applied
* symmetrically to the lower and upper bounds.
*
* The size of @a aabb_sz_inc determines how the expansion values are
* interpreted:
* - `1`: one expansion value used in every direction for every element
* - `NElements`: one expansion value per element, reused in x/y/z
* directions
* - `SpaceDim`: one expansion value per physical direction, reused for
* every element
* - `NElements*SpaceDim`: one expansion value per element and direction,
* ordered as `(dx1,dy1,dz1, ... dxN,dyN,dzN)`
*
* This method disables the oriented bounding-box precheck because the
* stored boxes are modified only in their axis-aligned representation.
*
* @param[in] m Input surface mesh.
* @param[in] aabb_sz_inc Total absolute AABB expansion applied in
* each physical direction to the stored
* axis-aligned bounding boxes.
* @param[in] newt_tol Newton tolerance for the point-search
* kernels.
*
* @note We disable the oriented bounding box check with this setup.
* @a bdr_tol is also adjusted so that all points in the AABBs can
* be found.
*/
void SetupSurfWithAABBExpansion(Mesh &m, const Vector &aabb_sz_inc,
const double newt_tol = 1.0e-12);
/** @brief Searches positions given in physical space by \p point_pos.
@details These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
/** Searches positions given in physical space by \p point_pos.
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by \p point_pos_ordering.
This function populates the following member variables:
#gsl_code Return codes for each point: inside element (0),
element boundary (1), not found (2).
@@ -481,77 +261,40 @@ public:
#gsl_dist Distance between the sought and the found point
in physical space. */
void FindPoints(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Convenience function when point positions are in a ParticleVector
void FindPoints(const ParticleVector &point_pos)
{
FindPoints(point_pos, point_pos.GetOrdering());
}
/** @brief Searches positions given in physical space by \p point_pos on
* surface mesh. */
void FindPointsSurf(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
/// Convenience function when point positions are in a ParticleVector
void FindPointsSurf(const ParticleVector &point_pos)
{
FindPointsSurf(point_pos, point_pos.GetOrdering());
}
/// Setup FindPoints and search positions
void FindPoints(Mesh &m, const Vector &point_pos,
const int point_pos_ordering = Ordering::byNODES,
const double bbox_rel_size_inc = 0.1,
const double newt_tol = 1.0e-12,
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
/** @brief Interpolation of field values at prescribed reference space
* positions.
/** Interpolation of field values at prescribed reference space positions.
@param[in] field_in Function values that will be interpolated on the
reference positions. Note: it is assumed that
\p field_in is in H1 and in the same space as the
mesh that was given to Setup().
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value.
The output ordering is determined from field_in.
@note: field_out is moved to device if field_in is on device. Otherwise,
field_out memory allocation is not changed.
*/
The output ordering is determined from field_in.*/
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
/// Interpolation of field values, with output ordering specification.
virtual void Interpolate(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/** @brief Same as Interpolate but for surface meshes */
virtual void InterpolateSurf(const GridFunction &field_in,
Vector &field_out);
/** @brief Same as Interpolate but for surface meshes with specified output
ordering */
virtual void InterpolateSurf(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering);
/** @brief Search positions and interpolate.
*
* @details The ordering (byNODES or byVDIM) of the output values in
* \p field_out corresponds to the ordering used in the input
* GridFunction \p field_in.
*/
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
the output values in \p field_out corresponds to the ordering used
in the input GridFunction \p field_in. */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Search positions and interpolate with given point and output ordering.
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out, const int point_pos_ordering,
const int field_out_ordering);
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
or byVDIM) of the output values in \p field_out corresponds to the
ordering used in the input GridFunction \p field_in. */
@@ -559,41 +302,32 @@ public:
const GridFunction &field_in, Vector &field_out,
const int point_pos_ordering = Ordering::byNODES);
/** @brief Average type to be used for L2 functions in-case a point is
* located at an element boundary where the function might be multi-valued.
*/
/// Average type to be used for L2 functions in-case a point is located at
/// an element boundary where the function might be multi-valued.
virtual void SetL2AvgType(AvgType avgtype_) { avgtype = avgtype_; }
/** @brief Set the default interpolation value for points that are not found in the mesh. */
/// Set the default interpolation value for points that are not found in the
/// mesh.
virtual void SetDefaultInterpolationValue(double interp_value_)
{
default_interp_value = interp_value_;
}
/** @brief Tolerance for detecting points outside the 'curvilinear' boundary.
*
* @details When using FindPoints, gslib may return points as found on the
* boundary even when they are slightly outside the domain. This tolerance
* is used to filter such points based on the distance^2 value and mark them
* as not found.
*
* @note When the SetupSurfWithAABBExpansion method is used for surface
* meshes, this tolerance is automatically computed based on the size of
* expanded AABBs. Using this method will override that computed tolerance.
* */
/// Set the tolerance for detecting points outside the 'curvilinear' boundary
/// that gslib may return as found on the boundary. Points found on boundary
/// with distance greater than @ bdr_tol are marked as not found.
virtual void SetDistanceToleranceForPointsFoundOnBoundary(double bdr_tol_)
{
bdr_tol = bdr_tol_;
}
/** @brief Enable/Disable use of CPU functions for GPU data if the gslib
* version is older. */
/// Enable/Disable use of CPU functions for GPU data if the gslib version
/// is older.
virtual void SetGPUtoCPUFallback(bool mode) { gpu_to_cpu_fallback = mode; }
/** @brief Cleans up memory allocated internally by gslib.
@details Note that in parallel, this must be called before MPI_Finalize,
as it calls MPI_Comm_free() for internal gslib communicators. FreeData is
/** Cleans up memory allocated internally by gslib.
Note that in parallel, this must be called before MPI_Finalize(), as it
calls MPI_Comm_free() for internal gslib communicators. FreeData is
also called by the class destructor and there are no memory leaks if the
destructor is called before MPI_Finalize(). If the destructor is called
after MPI_Finalize(), there will be an error because gslib will try to
@@ -601,8 +335,8 @@ public:
*/
virtual void FreeData();
/** @brief Return code for each point searched by FindPoints:
* inside element (0), element boundary (1), or not found (2). */
/// Return code for each point searched by FindPoints: inside element (0), on
/// element boundary (1), or not found (2).
virtual const Array<unsigned int> &GetCode() const { return gsl_code; }
/// Return element number for each point found by FindPoints.
virtual const Array<unsigned int> &GetElem() const { return gsl_mfem_elem; }
@@ -610,15 +344,15 @@ public:
virtual const Array<unsigned int> &GetProc() const { return gsl_proc; }
/// Return reference coordinates for each point found by FindPoints.
virtual const Vector &GetReferencePosition() const { return gsl_mfem_ref; }
/// Return distance between the sought and the found point in physical space.
/// Return distance between the sought and the found point in physical space,
/// for each point found by FindPoints.
virtual const Vector &GetDist() const { return gsl_dist; }
/** @brief Return element number for each point found by FindPoints
* corresponding to GSLIB mesh. gsl_mfem_elem != gsl_elem for mesh with
* simplices. */
/// Return element number for each point found by FindPoints corresponding to
/// GSLIB mesh. gsl_mfem_elem != gsl_elem for mesh with simplices.
virtual const Array<unsigned int> &GetGSLIBElem() const { return gsl_elem; }
/** @brief Return reference coordinates in [-1,1] (internal range in GSLIB)
* for each point found by FindPoints. */
/// Return reference coordinates in [-1,1] (internal range in GSLIB) for each
/// point found by FindPoints.
virtual const Vector &GetGSLIBReferencePosition() const { return gsl_ref; }
/// Get array of indices of not-found points.
@@ -661,7 +395,7 @@ public:
/// Return the axis-aligned bounding boxes (AABB) computed during \ref Setup.
/// The size of the returned vector is (nel x nverts x dim), where nel is the
/// number of elements (after splitting for simplicies), nverts is number of
/// number of elements (after splitting for simplcies), nverts is number of
/// vertices (4 in 2D, 8 in 3D), and dim is the spatial dimension.
void GetAxisAlignedBoundingBoxes(Vector &aabb) const;
@@ -675,18 +409,6 @@ public:
/// \p obbV, a vector of size (nel x nverts x dim) .
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV) const;
/** @brief Return the bounding boxes as a mesh on rank 0.
*
* @param[in] type Bounding-box type: 0 - AABB, 1 - OBB.
*
* @return On rank 0, returns a newly allocated mesh containing the
* bounding boxes. The caller owns the returned pointer and is responsible
* for deleting it. On other ranks, returns nullptr.
*/
Mesh *GetBoundingBoxMesh(int type);
virtual const Vector &GetGLLMesh() const { return gsl_mesh; }
};
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
@@ -715,28 +437,25 @@ public:
Note: not tested with periodic meshes (L2).
Note: the input mesh \p m must have Nodes set.
@param[in] m Input mesh.
@param[in] meshid A unique # for each overlapping mesh.
This id is used to make sure that points
being searched are not looked for in the
mesh that they belong to.
@param[in] gfmax (Optional) GridFunction in H1 that is used
as a discriminator when one point is
located in multiple meshes. The mesh that
maximizes gfmax is chosen. For example,
using the distance field based on the
overlapping boundaries is helpful for
convergence during Schwarz iterations.
@param[in] bbox_rel_size_inc (Optional) Relative size increase applied
when expanding each element bounding box.
@param[in] newt_tol (Optional) Newton tolerance for the gslib
search methods.
@param[in] npt_max (Optional) Number of points for
simultaneous iteration. This alters
performance and memory footprint.*/
void Setup(Mesh &m, const int meshid, GridFunction *gfmax = nullptr,
const double bbox_rel_size_inc = 0.1,
const double newt_tol = 1.0e-12,
@param[in] m Input mesh.
@param[in] meshid A unique # for each overlapping mesh. This id is
used to make sure that points being searched are not
looked for in the mesh that they belong to.
@param[in] gfmax (Optional) GridFunction in H1 that is used as a
discriminator when one point is located in multiple
meshes. The mesh that maximizes gfmax is chosen.
For example, using the distance field based on the
overlapping boundaries is helpful for convergence
during Schwarz iterations.
@param[in] bb_t (Optional) Relative size of bounding box around
each element.
@param[in] newt_tol (Optional) Newton tolerance for the gslib
search methods.
@param[in] npt_max (Optional) Number of points for simultaneous
iteration. This alters performance and
memory footprint.*/
void Setup(Mesh &m, const int meshid, GridFunction *gfmax = NULL,
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
/** Searches positions given in physical space by \p point_pos. All output
@@ -792,7 +511,7 @@ class GSOPGSLIB
protected:
struct gslib::crystal *cr; // gslib's internal data
struct gslib::comm *gsl_comm; // gslib's internal data
struct gslib::gs_data *gsl_data = nullptr;
struct gslib::gs_data *gsl_data = NULL;
int num_ids;
public:
@@ -817,116 +536,6 @@ public:
void GS(Vector &senddata, GSOp op);
};
#if defined(MFEM_USE_MPI)
/** \brief Class to map a point in physical space to candidate ranks.
*
* This class builds a Cartesian-aligned tensor grid that covers the entire
* domain and precomputes which ranks have elements intersecting each
* grid cell. Given a point in physical space, the grid cell containing
* the point is determined, and the list of candidate ranks whose
* elements intersect that cell is returned. This yields a fast, conservative
* point-to-rank candidate query. This is used internally by FindPointsGSLIB
* to speed up point searches in parallel.
*
* See Mittal et al., "General Field Evaluation in High-Order Meshes on GPUs".
* (2025). Computers & Fluids. for technical details.
*
*/
class GlobalBBoxTensorGridMap
{
private:
struct gslib::crystal *cr = nullptr; // gslib's internal data
struct gslib::comm *gsl_comm = nullptr; // gslib's internal data
int sdim, n_local_cells, num_procs;
Array<int> gmap_n;
Vector gmap_bnd_min, gmap_bnd_max;
Vector gmap_fac;
Array<int> ggrid_map;
void SetupCrystal(const MPI_Comm &comm);
public:
/// Constructor for a given mesh and number of tensor grid divisions
GlobalBBoxTensorGridMap(ParMesh &pmesh, int nx);
/** @brief Constructor for given element bounds and spatial dimension.
*
* @details This constructor must be called collectively on \a comm.
* Supports spatial dimensions 1, 2, and 3, and accepts nel == 0 on a rank.
*
* Assumes elmin, elmax Ordering::byNodes:
* elmin -> [x_{0,min},x_{1,min},... ,y_{0,min},y_{1,min},..,z_{nel-1,min}]
* elmax -> [x_{0,max},x_{1,max},... ,y_{0,max},y_{1,max},..,z_{nel-1,max}]
* Note elmin, elmax can be obtained using GridFunction::GetElementBounds()
*
* When by_max_size=false, n gives the number of tensor-grid divisions in
* each direction. When by_max_size=true, n is a per-rank size hint used to
* derive a uniform global resolution. The communicator-wide sum of n is
* converted to nx = ceil(pow(sum(n), 1./sdim)) in each direction, so n is
* not a hard cap on ggrid_map.Size().
*/
GlobalBBoxTensorGridMap(const MPI_Comm &comm, Vector &elmin,
Vector &elmax, int nel, int sdim, int n,
bool by_max_size);
/** @brief Constructor for given element bounds, spatial dimension, and
* tensor-grid divisions in each direction.
*
* @details This constructor must be called collectively on \a comm.
* Supports spatial dimensions 1, 2, and 3, and accepts nel == 0 on a rank.
* Requires nx.Size() == sdim and positive entries in nx.
*
* Assumes elmin, elmax Ordering::byNodes:
* elmin -> [x_{0,min},x_{1,min},... ,y_{0,min},y_{1,min},..,z_{nel-1,min}]
* elmax -> [x_{0,max},x_{1,max},... ,y_{0,max},y_{1,max},..,z_{nel-1,max}]
* Note elmin, elmax can be obtained using GridFunction::GetElementBounds()
*/
GlobalBBoxTensorGridMap(const MPI_Comm &comm, Vector &elmin,
Vector &elmax, int nel, int sdim, Array<int> &nx);
~GlobalBBoxTensorGridMap();
/** @brief Get list of procs corresponding to the list of points.
*
* @details This method must be called collectively on the communicator
* used to construct the map. The input points can be ordered byNodes:
* (XXX...,YYY...,ZZZ) or byVDIM: (XYZ,XYZ,...), as specified by
* \a ordering.
*
* The output map contains one entry for each input point, keyed by the
* point's local index in \a xyz. Points with no candidate ranks, including
* points outside the global bounding box, have an empty list of candidate
* ranks.
*/
void MapPointsToProcs(Vector &xyz, int ordering,
std::map<int, std::vector<int>> &pt_to_procs) const;
// Some getters
const Array<int> &GetGridMap() const { return ggrid_map; }
const Vector &GetGridFac() const { return gmap_fac; }
const Vector &GetGridMin() const { return gmap_bnd_min; }
const Vector &GetGridMax() const { return gmap_bnd_max; }
const Array<int> &GetGridN() const { return gmap_n; }
private:
/// Setup the map given element bounds and number of tensor grid divisions.
void Setup(const MPI_Comm &comm, Vector &elmin, Vector &elmax,
int nel, Array<int> &nx);
/// Get global hash cell index for a given point.
int GetGlobalGridCellFromPoint(Vector &xyz) const;
/** @brief Get owning proc and local index on that proc for given global
* grid cell index. */
void GlobalGridCellToProcAndLocalIndex(int i, int &proc, int &idx) const;
/// Map a point to proc and local index of the corresponding grid cell
void GetProcAndLocalIndexFromPoint(Vector &xyz, int &proc, int &idx) const;
/// Given local cell index, return list of procs saved in the map
Array<int> MapCellToProcs(int l_idx) const;
};
#endif // MFEM_USE_MPI
} // namespace mfem
#endif // MFEM_USE_GSLIB
+177 -73
View File
@@ -11,7 +11,7 @@
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#include "../../linalg/kernels.hpp"
#ifdef MFEM_USE_GSLIB
@@ -27,6 +27,8 @@
#pragma GCC diagnostic pop
#endif
#include <climits>
namespace mfem
{
#if GSLIB_RELEASE_VERSION >= 10009
@@ -52,14 +54,127 @@ struct findptsElementGPT_t
double x[DIM], jac[DIM * DIM], hes[4];
};
using dbl_range_t = gslib::dbl_range_t;
using obbox_t = gslib::obbox_t<DIM>;
using findptsLocalHashData_t = gslib::findptsLocalHashData_t<DIM>;
using gslib::bbox_test;
using gslib::hash_index;
using gslib::l2norm2;
using gslib::lag_eval_first_der;
using gslib::lag_eval_second_der;
struct dbl_range_t
{
double min, max;
};
struct obbox_t
{
double c0[DIM], A[DIM * DIM];
dbl_range_t x[DIM];
};
struct findptsLocalHashData_t
{
int hash_n;
dbl_range_t bnd[DIM];
double fac[DIM];
unsigned int *offset;
int max;
};
// Eval the ith Lagrange interpolant and its first derivative at x.
// Note: lCoeff stores pre-computed coefficients for fast evaluation.
static MFEM_HOST_DEVICE inline void lag_eval_first_der(double *p0, double x,
int i, const double *z,
const double *lCoeff,
int pN)
{
double u0 = 1, u1 = 0;
for (int j = 0; j < pN; ++j)
{
if (i != j)
{
double d_j = 2 * (x - z[j]);
u1 = d_j * u1 + u0;
u0 = d_j * u0;
}
}
p0[i] = lCoeff[i] * u0;
p0[pN+i] = 2.0 * lCoeff[i] * u1;
}
// Eval the ith Lagrange interpolant and its first and second derivative at x.
// Note: lCoeff stores pre-computed coefficients for fast evaluation.
static MFEM_HOST_DEVICE inline void lag_eval_second_der(double *p0, double x,
int i, const double *z,
const double *lCoeff,
int pN)
{
double u0 = 1, u1 = 0, u2 = 0;
for (int j = 0; j < pN; ++j)
{
if (i != j)
{
double d_j = 2 * (x - z[j]);
u2 = d_j * u2 + u1;
u1 = d_j * u1 + u0;
u0 = d_j * u0;
}
}
p0[i] = lCoeff[i] * u0;
p0[pN+i] = 2.0 * lCoeff[i] * u1;
p0[2*pN+i] = 8.0 * lCoeff[i] * u2;
}
// Axis-aligned bounding box test.
static MFEM_HOST_DEVICE inline double AABB_test(const obbox_t *const b,
const double x[2])
{
double test = 1;
for (int d = 0; d < 2; ++d)
{
double b_d = (x[d] - b->x[d].min) * (b->x[d].max - x[d]);
test = test < 0 ? test : b_d;
}
return test;
}
// Axis-aligned bounding box test followed by oriented bounding-box test.
static MFEM_HOST_DEVICE inline double bbox_test(const obbox_t *const b,
const double x[2])
{
const double bxyz = AABB_test(b, x);
if (bxyz < 0)
{
return bxyz;
}
else
{
double dxyz[2];
for (int d = 0; d < 2; ++d)
{
dxyz[d] = x[d] - b->c0[d];
}
double test = 1;
for (int d = 0; d < 2; ++d)
{
double rst = 0;
for (int e = 0; e < 2; ++e)
{
rst += b->A[d * 2 + e] * dxyz[e];
}
double brst = (rst + 1) * (1 - rst);
test = test < 0 ? test : brst;
}
return test;
}
}
// Element index corresponding to hash mesh that the point is located in.
static MFEM_HOST_DEVICE inline int hash_index(const findptsLocalHashData_t *p,
const double x[2])
{
const int n = p->hash_n;
int sum = 0;
for (int d = 2 - 1; d >= 0; --d)
{
sum *= n;
int i = (int)floor((x[d] - p->bnd[d].min) * p->fac[d]);
sum += i < 0 ? 0 : (n - 1 < i ? n - 1 : i);
}
return sum;
}
/*Solve Ax=y. A is row-major */
static MFEM_HOST_DEVICE inline void lin_solve_2(double x[2], const double A[4],
@@ -70,6 +185,12 @@ static MFEM_HOST_DEVICE inline void lin_solve_2(double x[2], const double A[4],
x[1] = idet*(A[0]*y[1] - A[2]*y[0]);
}
/* L2 norm squared. */
static MFEM_HOST_DEVICE inline double l2norm2(const double x[2])
{
return x[0] * x[0] + x[1] * x[1];
}
/* the bit structure of flags is CSSRR
the C bit --- 1<<4 --- is set when the point is converged
RR is 0 = 00b if r is unconstrained,
@@ -231,7 +352,7 @@ static MFEM_HOST_DEVICE bool reject_prior_step_q(findptsElementPoint_t *res,
const findptsElementPoint_t *p,
const double tol)
{
const double dist2 = l2norm2<2>(resid);
const double dist2 = l2norm2(resid);
const double decr = p->dist2 - dist2;
const double pred = p->dist2p;
for (int d = 0; d < 2; ++d)
@@ -441,7 +562,7 @@ newton_area_fin:
int f = flags >> (2 * dd) & 3u;
res->r[dd] = f == 0 ? r0[dd] + dr[dd] : (f == 1 ? -1 : 1);
}
res->flags = flags | ((p->flags & FLAG_MASK) << 5);
res->flags = flags | (p->flags << 5);
}
// Full Newton solve on the face. One of r/s/t is constrained.
@@ -514,8 +635,7 @@ newton_edge_fin:
res->r[de] = nr;
res->r[dn]=p->r[dn];
res->dist2p = -v;
res->flags = flags | new_flags | ((p->flags & FLAG_MASK) << 5);
#undef EVAL
res->flags = flags | new_flags | (p->flags << 5);
}
// Find closest mesh node to the sought point.
@@ -574,26 +694,27 @@ static MFEM_HOST_DEVICE double tensor_ig2_j(double *g_partials,
}
template<int T_D1D = 0>
static void FindPointsLocal2DKernel(const int npt,
const double tol,
const double *x,
const int point_pos_ordering,
const double *xElemCoord,
const int nel,
const double *wtend,
const double *boxinfo,
const int hash_n,
const double *hashMin,
const double *hashFac,
unsigned int *hashOffset,
unsigned int *const code_base,
unsigned int *const el_base,
double *const r_base,
double *const dist2_base,
const double *gll1D,
const double *lagcoeff,
const int pN = 0)
static void FindPointsLocal2D_Kernel(const int npt,
const double tol,
const double *x,
const int point_pos_ordering,
const double *xElemCoord,
const int nel,
const double *wtend,
const double *boxinfo,
const int hash_n,
const double *hashMin,
const double *hashFac,
unsigned int *hashOffset,
unsigned int *const code_base,
unsigned int *const el_base,
double *const r_base,
double *const dist2_base,
const double *gll1D,
const double *lagcoeff,
const int pN = 0)
{
#define MAX_CONST(a, b) (((a) > (b)) ? (a) : (b))
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
const int D1D = T_D1D ? T_D1D : pN;
const int p_NE = D1D*D1D;
@@ -608,7 +729,7 @@ static void FindPointsLocal2DKernel(const int npt,
// 3D1D for seed, 10D1D+6 for area, 3D1D+9 for edge
constexpr int size1 = 10*MD1 + 6;
constexpr int size2 = MD1*4; // edge constraints
constexpr int size3 = MD1*MD1*DIM; // local element coordinates
constexpr int size3 = MD1*MD1*MD1*DIM; // local element coordinates
MFEM_SHARED double r_workspace[size1];
MFEM_SHARED findptsElementPoint_t el_pts[2];
@@ -1041,9 +1162,9 @@ void FindPointsGSLIB::FindPointsLocal2(const Vector &point_pos,
auto pgslm = gsl_mesh.Read();
auto pwt = DEV.wtend.Read();
auto pbb = DEV.bb.Read();
auto plhm = DEV.lh_min.Read();
auto plhf = DEV.lh_fac.Read();
auto plho = DEV.lh_offset.ReadWrite();
auto plhm = DEV.loc_hash_min.Read();
auto plhf = DEV.loc_hash_fac.Read();
auto plho = DEV.loc_hash_offset.ReadWrite();
auto pcode = code.Write();
auto pelem = elem.Write();
auto pref = ref.Write();
@@ -1054,49 +1175,32 @@ void FindPointsGSLIB::FindPointsLocal2(const Vector &point_pos,
switch (DEV.dof1d)
{
case 2:
FindPointsLocal2DKernel<2>(npt, DEV.newt_tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
return FindPointsLocal2D_Kernel<2>(
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
pgll1d, plc);
case 3:
FindPointsLocal2DKernel<3>(npt, DEV.newt_tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
return FindPointsLocal2D_Kernel<3>(
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
pgll1d, plc);
case 4:
FindPointsLocal2DKernel<4>(npt, DEV.newt_tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
return FindPointsLocal2D_Kernel<4>(
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
pgll1d, plc);
case 5:
FindPointsLocal2DKernel<5>(npt, DEV.newt_tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
return FindPointsLocal2D_Kernel<5>(
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
pgll1d, plc);
default:
FindPointsLocal2DKernel(npt, DEV.newt_tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc, DEV.dof1d);
break;
return FindPointsLocal2D_Kernel(npt, DEV.newt_tol, pp, point_pos_ordering,
pgslm, NE_split_total, pwt, pbb, DEV.h_nx,
plhm, plhf, plho, pcode, pelem,
pref, pdist, pgll1d, plc, DEV.dof1d);
}
}
#undef DIM2
#undef DIM
#undef CODE_INTERNAL
#undef CODE_BORDER
#undef CODE_NOT_FOUND
+166 -38
View File
@@ -11,7 +11,9 @@
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#include "../../linalg/kernels.hpp"
#include <climits>
#ifdef MFEM_USE_GSLIB
@@ -57,15 +59,128 @@ struct findptsElemPt
double x[DIM], jac[DIM * DIM], hes[18];
};
using dbl_range_t = gslib::dbl_range_t;
using obbox_t = gslib::obbox_t<DIM>;
using findptsLocalHashData_t = gslib::findptsLocalHashData_t<DIM>;
using gslib::bbox_test;
using gslib::hash_index;
using gslib::l2norm2;
using gslib::lag_eval_first_der;
using gslib::lag_eval_second_der;
using gslib::lin_solve_sym_2;
struct dbl_range_t
{
double min, max;
};
struct obbox_t
{
double c0[DIM], A[DIM * DIM];
dbl_range_t x[DIM];
};
struct findptsLocalHashData_t
{
int hash_n;
dbl_range_t bnd[DIM];
double fac[DIM];
unsigned int *offset;
// int max;
};
// Eval the ith Lagrange interpolant and its first derivative at x.
// Note: lCoeff stores pre-computed coefficients for fast evaluation.
static MFEM_HOST_DEVICE inline void lag_eval_first_der(double *p0, double x,
int i, const double *z,
const double *lCoeff,
int pN)
{
double u0 = 1, u1 = 0;
for (int j = 0; j < pN; ++j)
{
if (i != j)
{
double d_j = 2*(x-z[j]);
u1 = d_j*u1+u0;
u0 = d_j*u0;
}
}
p0[i] = lCoeff[i]*u0;
p0[pN+i] = 2.0*lCoeff[i]*u1;
}
// Eval the ith Lagrange interpolant and its first and second derivative at x.
// Note: lCoeff stores pre-computed coefficients for fast evaluation.
static MFEM_HOST_DEVICE inline void lag_eval_second_der(double *p0, double x,
int i, const double *z,
const double *lCoeff,
int pN)
{
double u0 = 1, u1 = 0, u2 = 0;
for (int j = 0; j < pN; ++j)
{
if (i != j)
{
double d_j = 2*(x-z[j]);
u2 = d_j*u2+u1;
u1 = d_j*u1+u0;
u0 = d_j*u0;
}
}
p0[i] = lCoeff[i]*u0;
p0[pN+i] = 2.0*lCoeff[i]*u1;
p0[2*pN+i] = 8.0*lCoeff[i]*u2;
}
// Axis-aligned bounding box test.
static MFEM_HOST_DEVICE inline double AABB_test(const obbox_t *const b,
const double x[3])
{
double b_d;
for (int d = 0; d < 3; ++d)
{
b_d = (x[d]-b->x[d].min)*(b->x[d].max-x[d]);
if (b_d < 0) { return b_d; }
}
return b_d;
}
// Axis-aligned bounding box test followed by oriented bounding-box test.
static MFEM_HOST_DEVICE inline double bbox_test(const obbox_t *const b,
const double x[3])
{
const double bxyz = AABB_test(b, x);
if (bxyz < 0)
{
return bxyz;
}
else
{
double dxyz[3];
for (int d = 0; d < 3; ++d)
{
dxyz[d] = x[d]-b->c0[d];
}
double test = 1;
for (int d = 0; d < 3; ++d)
{
double rst = 0;
for (int e = 0; e < 3; ++e)
{
rst += b->A[d*3+e]*dxyz[e];
}
double brst = (rst+1)*(1-rst);
test = test < 0 ? test : brst;
}
return test;
}
}
// Element index corresponding to hash mesh that the point is located in.
static MFEM_HOST_DEVICE inline int hash_index(const findptsLocalHashData_t *p,
const double x[3])
{
const int n = p->hash_n;
int sum = 0;
for (int d = 3-1; d >= 0; --d)
{
sum *= n;
int i = (int)floor((x[d]-p->bnd[d].min)*p->fac[d]);
sum += i < 0 ? 0 : (n-1 < i ? n-1 : i);
}
return sum;
}
// Solve Ax=y. A is row-major.
static MFEM_HOST_DEVICE inline void lin_solve_3(double x[3], const double A[9],
@@ -84,6 +199,22 @@ static MFEM_HOST_DEVICE inline void lin_solve_3(double x[3], const double A[9],
x[2] = idet*(inv6*y[0]+inv7*y[1]+inv8*y[2]);
}
// Solve Ax=y. A is a symmetric 2x2 matrix.
static MFEM_HOST_DEVICE inline void lin_solve_sym_2(double x[2],
const double A[3],
const double y[2])
{
const double idet = 1 / (A[0]*A[2]-A[1]*A[1]);
x[0] = idet*(A[2]*y[0]-A[1]*y[1]);
x[1] = idet*(A[0]*y[1]-A[1]*y[0]);
}
// L2 norm.
static MFEM_HOST_DEVICE inline double l2norm2(const double x[3])
{
return x[0]*x[0]+x[1]*x[1]+x[2]*x[2];
}
/* the bit structure of flags is CTTSSRR
the C bit --- 1<<6 --- is set when the point is converged
RR is 0 = 00b if r is unconstrained,
@@ -328,7 +459,7 @@ static MFEM_HOST_DEVICE bool reject_prior_step_q(findptsPt *res,
const findptsPt *p,
const double tol)
{
const double dist2 = l2norm2<3>(resid);
const double dist2 = l2norm2(resid);
const double decr = p->dist2-dist2;
const double pred = p->dist2p;
for (int d = 0; d < 3; ++d)
@@ -575,7 +706,7 @@ newton_vol_fin:
int f = flags >> (2*dd) & 3u;
res->r[dd] = f == 0 ? r0[dd]+dr[dd] : (f == 1 ? -1 : 1);
}
res->flags = flags | ((p->flags & FLAG_MASK) << 7);
res->flags = flags | (p->flags << 7);
}
// Full Newton solve on the face. One of r/s/t is constrained.
@@ -758,7 +889,7 @@ newton_face_fin:
res->r[dn] = p->r[dn];
res->r[d1] = r[0];
res->r[d2] = r[1];
res->flags = new_flags | ((p->flags & FLAG_MASK) << 7);
res->flags = new_flags | (p->flags << 7);
}
// Full Newton solve on the edge. Two of r/s/t are constrained.
@@ -842,8 +973,7 @@ newton_edge_fin:
res->r[dn1] = p->r[dn1];
res->r[dn2] = p->r[dn2];
res->dist2p = -v;
res->flags = flags | new_flags | ((p->flags & FLAG_MASK) << 7);
#undef EVAL
res->flags = flags | new_flags | (p->flags << 7);
}
// Find closest mesh node to the sought point.
@@ -1122,6 +1252,7 @@ static void FindPointsLocal3DKernel(const int npt,
case 0: // findpt_vol
{
double *wtr = r_workspace_ptr;
double *resid = wtr+6*D1D;
double *jac = resid+3;
double *resid_temp = jac+9;
@@ -1372,7 +1503,7 @@ static void FindPointsLocal3DKernel(const int npt,
// Hes_T is transposed version (i.e. in col major)
// n1*[2, 1, 1, 0, 0]
// j==1 => wt_j = wt+n1
double *wt_j = wt+D1D*(2 - (row+1)/2);
double *wt_j = wt+D1D*(2-(row+1) / 2);
const double *x = e_x[row+1][d];
hes_T[j] = 0.0;
for (int k = 0; k < D1D; ++k)
@@ -1391,6 +1522,7 @@ static void FindPointsLocal3DKernel(const int npt,
hes[j] += resid[d]*hes_T[j*3+d];
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(l,x,1)
@@ -1648,7 +1780,6 @@ static void FindPointsLocal3DKernel(const int npt,
} //findpts_local
} //elp
});
#undef MAXC
}
void FindPointsGSLIB::FindPointsLocal3(const Vector &point_pos,
@@ -1665,9 +1796,9 @@ void FindPointsGSLIB::FindPointsLocal3(const Vector &point_pos,
auto pgslm = gsl_mesh.Read();
auto pwt = DEV.wtend.Read();
auto pbb = DEV.bb.Read();
auto plhm = DEV.lh_min.Read();
auto plhf = DEV.lh_fac.Read();
auto plho = DEV.lh_offset.ReadWrite();
auto plhm = DEV.loc_hash_min.Read();
auto plhf = DEV.loc_hash_fac.Read();
auto plho = DEV.loc_hash_offset.ReadWrite();
auto pcode = code.Write();
auto pelem = elem.Write();
auto pref = ref.Write();
@@ -1678,36 +1809,33 @@ void FindPointsGSLIB::FindPointsLocal3(const Vector &point_pos,
{
case 2:
FindPointsLocal3DKernel<2>(npt, DEV.newt_tol, pp, point_pos_ordering,
pgslm, NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist, pgll1d, plc);
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
plc);
break;
case 3:
FindPointsLocal3DKernel<3>(npt, DEV.newt_tol, pp, point_pos_ordering,
pgslm, NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist, pgll1d, plc);
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
plc);
break;
case 4:
FindPointsLocal3DKernel<4>(npt, DEV.newt_tol, pp, point_pos_ordering,
pgslm, NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist, pgll1d, plc);
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
plc);
break;
case 5:
FindPointsLocal3DKernel<5>(npt, DEV.newt_tol, pp, point_pos_ordering,
pgslm, NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist, pgll1d, plc);
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
plc);
break;
default:
FindPointsLocal3DKernel(npt, DEV.newt_tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist, pgll1d, plc,
FindPointsLocal3DKernel(npt, DEV.newt_tol, pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, DEV.h_nx, plhm, plhf,
plho, pcode, pelem, pref, pdist, pgll1d, plc,
DEV.dof1d);
break;
}
}
#undef pMax
-656
View File
@@ -1,656 +0,0 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#ifdef MFEM_USE_GSLIB
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wunused-function"
#endif
#include "gslib.h"
#ifndef GSLIB_RELEASE_VERSION //gslib v1.0.7
#define GSLIB_RELEASE_VERSION 10007
#endif
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
namespace mfem
{
#if GSLIB_RELEASE_VERSION >= 10009
#define CODE_INTERNAL 0
#define CODE_BORDER 1
#define CODE_NOT_FOUND 2
#define sDIM 2
#define sDIM2 4
#define rDIM 1
struct findptsElementPoint_t
{
double x[sDIM], r, oldr, dist2, dist2p, tr;
int flags;
};
struct findptsElementGEdge_t
{
double *x[sDIM];
};
struct findptsElementGPT_t
{
double x[sDIM], jac[sDIM*rDIM], hes[sDIM*rDIM];
};
using dbl_range_t = gslib::dbl_range_t;
using obbox_t = gslib::obbox_t<sDIM>;
using findptsLocalHashData_t = gslib::findptsLocalHashData_t<sDIM>;
using gslib::AABB_test;
using gslib::bbox_test;
using gslib::hash_index;
using gslib::l2norm2;
using gslib::lag_eval_second_der;
/* the bit structure of flags is CRR
the C bit --- 1<<2 --- is set when the point is converged
RR is 0 = 00b if r is unconstrained,
1 = 01b if r is constrained at -1, i.e., rmin
2 = 10b if r is constrained at +1, i.e., rmax
*/
#define CONVERGED_FLAG (1u<<2)
#define FLAG_MASK 0x07u // = 111b
/* returns 1 if r direction (the only free direction in 2D) is constrained.
returns 1 if either 1st or 2nd bit of flags is set.
*/
static MFEM_HOST_DEVICE inline int num_constrained(const int flags)
{
return ((flags | flags>>1) & 1u);
}
/* pi=0, r=-1; pi=1, r=+1 */
static MFEM_HOST_DEVICE inline int point_index(const int x)
{
return ((x>>1) & 1u);
}
/* check reduction in objective against prediction, and adjust
trust region radius (p->tr) accordingly;
may reject the prior step, returning 1; otherwise returns 0
sets out_pt->dist2, out_pt->index, out_pt->x, out_pt->oldr in any event,
leaving out_pt->r, out_pt->dr, out_pt->flags to be set when returning 0 */
static MFEM_HOST_DEVICE bool reject_prior_step_q(findptsElementPoint_t *out_pt,
const double resid[2],
const findptsElementPoint_t *p,
const double tol)
{
const double dist2 = l2norm2<2>(resid);
const double decr = p->dist2 - dist2;
const double pred = p->dist2p;
out_pt->x[0] = p->x[0];
out_pt->x[1] = p->x[1];
out_pt->oldr = p->r;
out_pt->dist2 = dist2;
if (decr >= 0.01*pred)
{
if (decr >= 0.9*pred) // very good iteration
{
out_pt->tr = p->tr*2;
}
else // somewhat good iteration
{
out_pt->tr = p->tr;
}
return false;
}
else
{
/* reject step; note: the point will pass through this routine
again, and we set things up here so it gets classed as a
"very good iteration" --- this doubles the trust radius,
which is why we divide by 4 below */
double v0 = fabs(p->r - p->oldr);
out_pt->tr = v0/4.0;
out_pt->dist2 = p->dist2;
out_pt->r = p->oldr;
out_pt->flags = p->flags>>3;
out_pt->dist2p = -HUGE_VAL;
if (pred < dist2*tol)
{
out_pt->flags |= CONVERGED_FLAG;
}
return true;
}
}
static MFEM_HOST_DEVICE inline void newton_edge( findptsElementPoint_t *const
out_pt,
const double jac[2],
const double rhess,
const double resid[2],
int flags,
const findptsElementPoint_t *const p,
const double tol )
{
const double tr = p->tr;
const double A = jac[0] * jac[0] + jac[1] * jac[1] -
rhess; // A = J^T J - resid_d H_d
const double y = jac[0]*resid[0] + jac[1]*resid[1]; // y = J^T resid
const double oldr = p->r;
double dr, newr, tdr, tnewr, v, tv;
int new_flags=0, tnew_flags=0;
#define EVAL(dr) ( (dr*A - 2*y) * dr )
if (A>0)
{
dr = y/A;
if (fabs(dr)<tol)
{
dr=0.0;
newr = oldr;
}
else
{
newr = oldr+dr;
}
if (fabs(dr)<tr && fabs(newr)<1)
{
v = EVAL(dr);
goto newton_edge_fin;
}
}
if ((newr=oldr-tr) > -1)
{
dr = -tr;
}
else
{
newr = -1, dr = -1-oldr, new_flags = flags|1u;
}
v = EVAL(dr);
if ((tnewr=oldr+tr) < 1)
{
tdr = tr;
}
else
{
tnewr = 1, tdr = 1-oldr, tnew_flags = flags|2u;
}
tv = EVAL(tdr);
if (tv<v)
{
newr = tnewr, dr = tdr, v = tv, new_flags = tnew_flags;
}
#undef EVAL
newton_edge_fin:
// check convergence by testing if change in r is less than tol
if (fabs(dr)<tol)
{
new_flags |= CONVERGED_FLAG;
}
out_pt->r = newr;
out_pt->dist2p = -v;
out_pt->flags = flags | new_flags | ((p->flags & FLAG_MASK)<<3);
}
static MFEM_HOST_DEVICE void seed_j( const double *elx[sDIM],
const double x[sDIM],
const double *z,
double *dist2,
double *r,
const int ir,
const int pN )
{
double dx[sDIM];
for (int d=0; d<sDIM; ++d)
{
dx[d] = x[d] - elx[d][ir];
}
dist2[ir] = HUGE_VAL;
const double dist2_rs = l2norm2(dx);
if (dist2[ir]>dist2_rs)
{
dist2[ir] = dist2_rs;
r[ir] = z[ir];
}
}
template<int T_D1D = 0>
static void FindPointsEdgeLocal2DKernel( const int npt,
const double tol,
const double dist2tol,
const double *x,
const int point_pos_ordering,
const double *xElemCoord,
const int nel,
const double *wtend,
const double *boxinfo,
const bool obb_check,
const int hash_n,
const double *hashMin,
const double *hashFac,
unsigned int *hashOffset,
unsigned int *const code_base,
unsigned int *const el_base,
double *const r_base,
double *const dist2_base,
const double *gll1D,
const double *lagcoeff,
const int pN = 0 )
{
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
const int D1D = T_D1D ? T_D1D : pN;
const int p_NEL = nel*D1D;
MFEM_VERIFY(MD1<=DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(D1D!=0, "Polynomial order not specified.");
const int nThreads = D1D*sDIM;
mfem::forall_2D(npt, nThreads, 1, [=] MFEM_HOST_DEVICE (int i)
{
// 2D1D for seed, 3D1D + 7 for edge
constexpr int size1 = 3*MD1 + 7;
// edge coordinates = D1D*2
constexpr int size2 = 2*MD1;
// local element coordinates in shared memory
constexpr int size3 = MD1*sDIM;
MFEM_SHARED findptsElementPoint_t el_pts[2];
MFEM_SHARED double r_workspace[size1];
MFEM_SHARED double constraint_workspace[size2];
MFEM_SHARED double elem_coords[MD1 <= 6 ? size3 : 1];
double *r_workspace_ptr = r_workspace;
findptsElementPoint_t *fpt, *tmp;
fpt = el_pts + 0;
tmp = el_pts + 1;
// x and y coord index within point_pos for point i
int id_x = point_pos_ordering == 0 ? i : i*sDIM;
int id_y = point_pos_ordering == 0 ? i+npt : i*sDIM+1;
double x_i[2] = {x[id_x], x[id_y]};
unsigned int *code_i = code_base + i;
double *dist2_i = dist2_base + i;
//---------------- map_points_to_els --------------------
findptsLocalHashData_t hash;
for (int d=0; d<sDIM; ++d)
{
hash.bnd[d].min = hashMin[d];
hash.fac[d] = hashFac[d];
}
hash.hash_n = hash_n;
hash.offset = hashOffset;
const int hi = hash_index(&hash, x_i);
const unsigned int *elp = hash.offset + hash.offset[hi];
const unsigned int *const ele = hash.offset + hash.offset[hi+1];
*code_i = CODE_NOT_FOUND;
*dist2_i = HUGE_VAL;
for (; elp!=ele; ++elp)
{
const unsigned int el = *elp;
const int n_box_ents = obb_check ? (3*sDIM + sDIM2) : (2*sDIM);
bool pass_bb = true;
obbox_t box;
if (obb_check)
{
for (int idx = 0; idx < sDIM; ++idx)
{
box.c0[idx] = boxinfo[n_box_ents*el + idx];
box.x[idx].min = boxinfo[n_box_ents*el + sDIM + idx];
box.x[idx].max = boxinfo[n_box_ents*el + 2*sDIM + idx];
}
for (int idx = 0; idx < sDIM2; ++idx)
{
box.A[idx] = boxinfo[n_box_ents*el + 3*sDIM + idx];
}
pass_bb = (bbox_test(&box, x_i) >= 0);
}
else
{
for (int d = 0; d < sDIM; ++d)
{
box.x[d].min = boxinfo[n_box_ents*el + d];
box.x[d].max = boxinfo[n_box_ents*el + sDIM + d];
}
pass_bb = (AABB_test(&box, x_i) >= 0);
}
if (pass_bb)
{
//------------ findpts_local ------------------
{
if (MD1 <= 6)
{
MFEM_FOREACH_THREAD(j,x,D1D*sDIM)
{
const int qp = j % D1D;
const int d = j / D1D;
elem_coords[qp + d*D1D] =
xElemCoord[qp + el*D1D + d*p_NEL];
}
MFEM_SYNC_THREAD;
}
const double *elx[sDIM];
for (int d=0; d<sDIM; d++)
{
elx[d] = MD1<= 6 ? &elem_coords[d*D1D] :
xElemCoord + d*p_NEL + el*D1D;
}
MFEM_SYNC_THREAD;
//// findpts_el ////
{
MFEM_FOREACH_THREAD(j,x,1)
{
fpt->dist2 = HUGE_VAL;
fpt->dist2p = 0;
fpt->tr = 1;
}
MFEM_FOREACH_THREAD(j,x,sDIM)
{
fpt->x[j] = x_i[j];
}
MFEM_SYNC_THREAD;
{
double *dist2_temp = r_workspace_ptr;
double *r_temp = dist2_temp + D1D;
MFEM_FOREACH_THREAD(j,x,D1D)
{
seed_j(elx, x_i, gll1D, dist2_temp, r_temp, j, D1D);
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
for (int ir=0; ir<D1D; ++ir)
{
if (dist2_temp[ir]<fpt->dist2)
{
fpt->dist2 = dist2_temp[ir];
fpt->r = r_temp[ir];
}
}
}
MFEM_SYNC_THREAD;
} //seed done
// Initialize tmp struct with fpt values before starting Newton iterations
MFEM_FOREACH_THREAD(j,x,1)
{
tmp->dist2 = HUGE_VAL;
tmp->dist2p = 0;
tmp->tr = 1;
tmp->flags = 0;
tmp->r = fpt->r;
}
MFEM_FOREACH_THREAD(j,x,sDIM)
{
tmp->x[j] = fpt->x[j];
}
MFEM_SYNC_THREAD;
for (int step=0; step<50; step++)
{
int nc = num_constrained(tmp->flags & FLAG_MASK);
switch (nc)
{
case 0:
{
double *wt = r_workspace_ptr;
double *resid = wt + 3*D1D;
double *jac = resid + sDIM;
double *hess = jac + sDIM*rDIM;
findptsElementGEdge_t edge;
for (int d=0; d<sDIM; ++d)
{
edge.x[d] = constraint_workspace + d*D1D;
}
MFEM_FOREACH_THREAD(j,x,D1D)
{
for (int d=0; d<sDIM; ++d)
{
edge.x[d][j] = elx[d][j];
}
}
MFEM_SYNC_THREAD;
// compute basis function info upto 2nd derivative
MFEM_FOREACH_THREAD(j,x,D1D)
{
lag_eval_second_der(wt, tmp->r, j, gll1D,
lagcoeff, D1D);
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,sDIM)
{
resid[j] = tmp->x[j];
jac[j] = 0.0;
hess[j] = 0.0;
for (int k=0; k<D1D; ++k)
{
resid[j] -= wt[ k]*edge.x[j][k];
jac[j] += wt[D1D+k]*edge.x[j][k];
hess[j] += wt[2*D1D+k]*edge.x[j][k];
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
hess[2] = resid[0]*hess[0] + resid[1]*hess[1];
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
if (!reject_prior_step_q(fpt, resid, tmp, tol))
{
newton_edge(fpt, jac, hess[2], resid,
tmp->flags & FLAG_MASK, tmp, tol);
}
}
MFEM_SYNC_THREAD;
break;
}
case 1: // r is constrained to either -1 or 1
{
MFEM_FOREACH_THREAD(j,x,1)
{
const int pi = point_index(tmp->flags &
FLAG_MASK);
const double *wt = wtend + pi*3*D1D;
findptsElementGPT_t gpt;
for (int d=0; d<sDIM; ++d)
{
gpt.x[d] = elx[d][pi*(D1D-1)];
gpt.jac[d] = 0.0;
gpt.hes[d] = 0.0;
for (int k=0; k<D1D; ++k)
{
gpt.jac[d] += wt[D1D +k]*elx[d][k];
gpt.hes[d] += wt[2*D1D+k]*elx[d][k];
}
}
const double *const pt_x = gpt.x;
const double *const jac = gpt.jac;
const double *const hes = gpt.hes;
double resid[sDIM], steep, sr;
resid[0] = fpt->x[0] - pt_x[0];
resid[1] = fpt->x[1] - pt_x[1];
steep = jac[0]*resid[0] + jac[1]*resid[1];
sr = steep*tmp->r;
if ( !reject_prior_step_q(fpt, resid, tmp, tol) )
{
if (sr<0)
{
const double rhess = resid[0]*hes[0] +
resid[1]*hes[1];
newton_edge(fpt, jac, rhess,
resid, 0, tmp, tol);
}
else // sr==0
{
fpt->r = tmp->r;
fpt->dist2p = 0;
fpt->flags = tmp->flags | CONVERGED_FLAG;
}
}
}
MFEM_SYNC_THREAD;
break;
} // case 1
} //switch
if (fpt->flags & CONVERGED_FLAG)
{
break;
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
*tmp = *fpt;
}
MFEM_SYNC_THREAD;
} //for int step<50
} //findpts_el
bool converged_internal =
((fpt->flags&FLAG_MASK) == CONVERGED_FLAG) &&
(fpt->dist2<dist2tol);
if (*code_i == CODE_NOT_FOUND || converged_internal ||
fpt->dist2 < *dist2_i)
{
MFEM_FOREACH_THREAD(j,x,1)
{
*(el_base+i) = el;
*code_i = converged_internal ? CODE_INTERNAL : CODE_BORDER;
*dist2_i = fpt->dist2;
*(r_base+i) = fpt->r;
}
MFEM_SYNC_THREAD;
if (converged_internal)
{
break;
}
}
} //findpts_local
} //obbox_test
} //elp
});
}
void FindPointsGSLIB::FindPointsEdgeLocal2( const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &code,
Array<unsigned int> &elem,
Vector &ref,
Vector &dist,
int npt )
{
if (npt==0)
{
return;
}
MFEM_VERIFY(dim==1 && spacedim==2,"Function for 2D edges only");
bool use_dev = point_pos.UseDevice();
auto pp = point_pos.Read(use_dev);
auto pgslm = gsl_mesh.Read(use_dev);
auto pwt = DEV.wtend.Read(use_dev);
auto pbb = DEV.bb.Read(use_dev);
auto plhm = DEV.lh_min.Read(use_dev);
auto plhf = DEV.lh_fac.Read(use_dev);
auto plho = DEV.lh_offset.ReadWrite(use_dev);
auto pcode = code.Write(use_dev);
auto pelem = elem.Write(use_dev);
auto pref = ref.Write(use_dev);
auto pdist = dist.Write(use_dev);
auto pgll1d = DEV.gll1d.ReadWrite(use_dev);
auto plc = DEV.lagcoeff.Read(use_dev);
double dist2tol = DEV.surf_dist_tol;
const bool obb_chk = obb_check;
switch (DEV.dof1d)
{
case 2:
FindPointsEdgeLocal2DKernel<2>(npt, DEV.newt_tol, dist2tol,
pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
case 3:
FindPointsEdgeLocal2DKernel<3>(npt, DEV.newt_tol, dist2tol,
pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
case 4:
FindPointsEdgeLocal2DKernel<4>(npt, DEV.newt_tol, dist2tol,
pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
default:
FindPointsEdgeLocal2DKernel(npt, DEV.newt_tol, dist2tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc, DEV.dof1d);
break;
}
}
#undef sDIM
#undef rDIM
#undef sDIM2
#undef CODE_INTERNAL
#undef CODE_BORDER
#undef CODE_NOT_FOUND
#else
void FindPointsGSLIB::FindPointsEdgeLocal2( const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &code,
Array<unsigned int> &elem,
Vector &ref,
Vector &dist,
int npt ) {} ;
#endif
} // namespace mfem
#endif //ifdef MFEM_USE_GSLIB
-661
View File
@@ -1,661 +0,0 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#ifdef MFEM_USE_GSLIB
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wunused-function"
#endif
#include "gslib.h"
#ifndef GSLIB_RELEASE_VERSION //gslib v1.0.7
#define GSLIB_RELEASE_VERSION 10007
#endif
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
namespace mfem
{
#if GSLIB_RELEASE_VERSION >= 10009
#define CODE_INTERNAL 0
#define CODE_BORDER 1
#define CODE_NOT_FOUND 2
#define sDIM 3
#define rDIM 1
#define sDIM2 (sDIM*sDIM)
#define rDIM2 (rDIM*rDIM)
struct findptsElementPoint_t
{
double x[sDIM], r, oldr, dist2, dist2p, tr;
int flags;
};
struct findptsElementGEdge_t
{
double *x[sDIM], *dxdn[sDIM], *d2xdn[sDIM];
};
struct findptsElementGPT_t
{
double x[sDIM], jac[sDIM], hes[sDIM*(1+1)];
};
using dbl_range_t = gslib::dbl_range_t;
using obbox_t = gslib::obbox_t<sDIM>;
using findptsLocalHashData_t = gslib::findptsLocalHashData_t<sDIM>;
using gslib::AABB_test;
using gslib::bbox_test;
using gslib::hash_index;
using gslib::l2norm2;
using gslib::lag_eval_second_der;
/* the bit structure of flags is CRR
the C bit --- 1<<2 --- is set when the point is converged
RR is 0 = 00b if r is unconstrained,
1 = 01b if r is constrained at -1, i.e., rmin
2 = 10b if r is constrained at +1, i.e., rmax
*/
#define CONVERGED_FLAG (1u<<2)
#define FLAG_MASK 0x07u
/* returns the number of constrained reference coordinates, max 1
*/
static MFEM_HOST_DEVICE inline int num_constrained(const int flags)
{
return ((flags | flags>>1) & 1u);
}
static MFEM_HOST_DEVICE inline int point_index(const int x)
{
return ((x>>1)&1u);
}
/* check reduction in objective against prediction, and adjust
trust region radius (p->tr) accordingly;
may reject the prior step, returning 1; otherwise returns 0
sets out_pt->dist2, out_pt->index, out_pt->x, out_pt->oldr in any event,
leaving out_pt->r, out_pt->dr, out_pt->flags to be set when returning 0 */
static MFEM_HOST_DEVICE bool reject_prior_step_q(findptsElementPoint_t *out_pt,
const double resid[3],
const findptsElementPoint_t *p,
const double tol)
{
const double dist2 = l2norm2<sDIM>(resid);
const double decr = p->dist2 - dist2;
const double pred = p->dist2p;
for (int d=0; d<sDIM; ++d)
{
out_pt->x[d] = p->x[d];
}
out_pt->oldr = p->r;
out_pt->dist2 = dist2;
if (decr>=0.01*pred)
{
if (decr>=0.9*pred) // very good iteration
{
out_pt->tr = 2*p->tr;
}
else // good iteration
{
out_pt->tr = p->tr;
}
return false;
}
else // if the iteration in not good
{
/* reject step; note: the point will pass through this routine
again, and we set things up here so it gets classed as a
"very good iteration" --- this doubles the trust radius,
which is why we divide by 4 below */
double v0 = fabs(p->r - p->oldr);
out_pt->tr = v0/4.0;
out_pt->dist2 = p->dist2;
out_pt->r = p->oldr;
out_pt->flags = p->flags>>3;
out_pt->dist2p = -HUGE_VAL;
if (pred<dist2*tol)
{
out_pt->flags |= CONVERGED_FLAG;
}
return true;
}
}
static MFEM_HOST_DEVICE inline void newton_edge(findptsElementPoint_t *const
out_pt,
const double jac[sDIM*rDIM],
const double rhes,
const double resid[sDIM],
int flags,
const findptsElementPoint_t *const p,
const double tol)
{
const double tr = p->tr;
/* A = J^T J - resid_d H_d */
const double A = jac[0]*jac[0]+ jac[1] * jac[1] + jac[2] * jac[2]
- rhes;
/* y = J^T r */
const double y = jac[0]*resid[0] + jac[1]*resid[1] + jac[0+2]*resid[2];
const double oldr = p->r;
double dr, nr, tdr, tnr;
double v, tv;
int new_flags = 0, tnew_flags = 0;
#define EVAL(dr) (dr*A - 2*y)*dr
/* if A is not SPD, quadratic model has no minimum */
if (A>0)
{
dr = y/A;
if (fabs(dr)<tol)
{
dr=0.0;
nr = oldr;
}
else
{
nr = oldr+dr;
}
if ( fabs(dr)<tr && fabs(nr)<1 )
{
v = EVAL(dr);
goto newton_edge_fin;
}
}
if ( (nr=oldr-tr)>-1 )
{
dr = -tr;
}
else
{
nr = -1, dr = -1-oldr, new_flags = flags | 1u;
}
v = EVAL(dr);
if ( (tnr = oldr+tr)<1 )
{
tdr = tr;
}
else
{
tnr = 1, tdr = 1-oldr, tnew_flags = flags | 2u;
}
tv = EVAL(tdr);
if (tv<v)
{
nr = tnr, dr = tdr, v = tv, new_flags = tnew_flags;
}
newton_edge_fin:
/* check convergence */
if ( fabs(dr)<tol )
{
new_flags |= CONVERGED_FLAG;
}
out_pt->r = nr;
out_pt->dist2p = -v;
out_pt->flags = flags | new_flags | ((p->flags & FLAG_MASK)<<3);
#undef EVAL
}
static MFEM_HOST_DEVICE void seed_j(const double *elx[sDIM],
const double x[sDIM],
const double *z,
double *dist2,
double *r,
const int ir,
const int pN)
{
if (ir>=pN)
{
return;
}
double dx[sDIM];
for (int d=0; d<sDIM; ++d)
{
dx[d] = x[d] - elx[d][ir];
}
dist2[ir] = l2norm2(dx);
r[ir] = z[ir];
}
template<int T_D1D = 0>
static void FindPointsEdgeLocal3DKernel(const int npt,
const double tol,
const double dist2tol,
const double *x,
const int point_pos_ordering,
const double *xElemCoord,
const int nel,
const double *wtend,
const double *boxinfo,
const bool obb_check,
const int hash_n,
const double *hashMin,
const double *hashFac,
unsigned int *hashOffset,
unsigned int *const code_base,
unsigned int *const el_base,
double *const r_base,
double *const dist2_base,
const double *gll1D,
const double *lagcoeff,
const int pN = 0)
{
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
const int D1D = T_D1D ? T_D1D : pN;
const int p_NEL = nel*D1D;
MFEM_VERIFY(MD1<=DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(D1D!=0, "Polynomial order not specified.");
const int nThreads = D1D*sDIM;
mfem::forall_2D(npt, nThreads, 1, [=] MFEM_HOST_DEVICE (int i)
{
constexpr int size1 = 3*MD1 + 13;
constexpr int size2 = 3*MD1;
constexpr int size3 = MD1*sDIM;
MFEM_SHARED findptsElementPoint_t el_pts[2];
MFEM_SHARED double r_workspace[size1];
MFEM_SHARED double constraint_workspace[size2];
MFEM_SHARED double elem_coords[MD1 <= 6 ? size3 : 1];
double *r_workspace_ptr = r_workspace;
findptsElementPoint_t *fpt, *tmp;
fpt = el_pts + 0;
tmp = el_pts + 1;
int id_x = point_pos_ordering==0 ? i : i*sDIM;
int id_y = point_pos_ordering==0 ? npt+i : 1+i*sDIM;
int id_z = point_pos_ordering==0 ? 2*npt+i : 2+i*sDIM;
double x_i[3] = {x[id_x], x[id_y], x[id_z]};
unsigned int *code_i = code_base + i;
double *dist2_i = dist2_base + i;
//// map_points_to_els ////
findptsLocalHashData_t hash;
for (int d=0; d<sDIM; ++d)
{
hash.bnd[d].min = hashMin[d];
hash.fac[d] = hashFac[d];
}
hash.hash_n = hash_n;
hash.offset = hashOffset;
const unsigned int hi = hash_index(&hash, x_i);
const unsigned int *elp = hash.offset + hash.offset[hi];
const unsigned int *const ele = hash.offset + hash.offset[hi+1];
*code_i = CODE_NOT_FOUND;
*dist2_i = HUGE_VAL;
for (; elp!=ele; ++elp)
{
const unsigned int el = *elp;
const int n_box_ents = obb_check ? (3*sDIM + sDIM2) : (2*sDIM);
bool pass_bb = true;
obbox_t box;
if (obb_check)
{
for (int idx = 0; idx < sDIM; ++idx)
{
box.c0[idx] = boxinfo[n_box_ents*el + idx];
box.x[idx].min = boxinfo[n_box_ents*el + sDIM + idx];
box.x[idx].max = boxinfo[n_box_ents*el + 2*sDIM + idx];
}
for (int idx = 0; idx < sDIM2; ++idx)
{
box.A[idx] = boxinfo[n_box_ents*el + 3*sDIM + idx];
}
pass_bb = (bbox_test(&box, x_i) >= 0);
}
else
{
for (int d = 0; d < sDIM; ++d)
{
box.x[d].min = boxinfo[n_box_ents*el + d];
box.x[d].max = boxinfo[n_box_ents*el + sDIM + d];
}
pass_bb = (AABB_test(&box, x_i) >= 0);
}
if (pass_bb)
{
//// findpts_local ////
{
if (MD1 <= 6)
{
MFEM_FOREACH_THREAD(j,x,D1D*sDIM)
{
const int qp = j % D1D;
const int d = j / D1D;
elem_coords[qp + d*D1D] =
xElemCoord[qp + el*D1D + d*p_NEL];
}
MFEM_SYNC_THREAD;
}
const double *elx[sDIM];
for (int d=0; d<sDIM; d++)
{
elx[d] = MD1<= 6 ? &elem_coords[d*D1D] :
xElemCoord + d*p_NEL + el*D1D;
}
MFEM_SYNC_THREAD;
//// findpts_el ////
{
MFEM_FOREACH_THREAD(j,x,1)
{
fpt->dist2 = HUGE_VAL;
fpt->dist2p = 0;
fpt->tr = 1.0;
}
MFEM_FOREACH_THREAD(j,x,sDIM)
{
fpt->x[j] = x_i[j];
}
MFEM_SYNC_THREAD;
//// seed ////
{
double *dist2_temp = r_workspace_ptr;
double *r_temp = dist2_temp + D1D;
MFEM_FOREACH_THREAD(j,x,nThreads)
{
seed_j(elx, x_i, gll1D, dist2_temp, r_temp, j, D1D);
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
fpt->dist2 = HUGE_VAL;
for (int ir=0; ir<D1D; ++ir)
{
if (dist2_temp[ir] < fpt->dist2)
{
fpt->dist2 = dist2_temp[ir];
fpt->r = r_temp[ir];
}
}
}
MFEM_SYNC_THREAD;
} //seed done
MFEM_FOREACH_THREAD(j,x,1)
{
tmp->dist2 = HUGE_VAL;
tmp->dist2p = 0;
tmp->tr = 1;
tmp->flags = 0;
tmp->r = fpt->r;
}
MFEM_FOREACH_THREAD(j,x,sDIM)
{
tmp->x[j] = fpt->x[j];
}
MFEM_SYNC_THREAD;
for (int step=0; step<50; step++)
{
switch (num_constrained(tmp->flags & FLAG_MASK))
{
case 0:
{
double *wt = r_workspace_ptr;
double *resid = wt + 3*D1D;
double *jac = resid + sDIM;
double *hess = jac + sDIM*rDIM;
findptsElementGEdge_t edge;
for (int d=0; d<sDIM; ++d)
{
edge.x[d] = constraint_workspace + d*D1D;
}
MFEM_FOREACH_THREAD(j,x,D1D)
{
for (int d=0; d<sDIM; ++d)
{
edge.x[d][j] = elx[d][j];
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,D1D)
{
lag_eval_second_der(wt, tmp->r, j, gll1D,
lagcoeff, D1D);
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,sDIM)
{
resid[j] = tmp->x[j];
jac[j] = 0.0;
hess[j] = 0.0;
for (int k=0; k<D1D; ++k)
{
resid[j] -= wt[ k]*edge.x[j][k];
jac[j] += wt[D1D+k]*edge.x[j][k];
hess[j] += wt[2*D1D+k]*edge.x[j][k];
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
hess[3] = resid[0]*hess[0] + resid[1]*hess[1] +
resid[2]*hess[2];
}
MFEM_FOREACH_THREAD(l,x,1)
{
if (!reject_prior_step_q(fpt,resid,tmp,tol))
{
newton_edge(fpt,jac,hess[3],resid,
tmp->flags&FLAG_MASK,tmp,tol);
}
}
MFEM_SYNC_THREAD;
break;
}
case 1:
{
MFEM_FOREACH_THREAD(j,x,1)
{
const int pi = point_index(tmp->flags &
FLAG_MASK);
const double *wt = wtend + pi*3*D1D;
findptsElementGPT_t gpt;
for (int d=0; d<sDIM; ++d)
{
gpt.x[d] = elx[d][pi*(D1D-1)];
gpt.jac[d] = 0.0;
gpt.hes[d] = 0.0;
for (int k=0; k<D1D; ++k)
{
gpt.jac[d] += wt[D1D +k]*elx[d][k];
gpt.hes[d] += wt[2*D1D+k]*elx[d][k];
}
}
const double *const pt_x = gpt.x;
const double *const jac = gpt.jac;
const double *const hes = gpt.hes;
double resid[sDIM], steep, sr;
resid[0] = fpt->x[0] - pt_x[0];
resid[1] = fpt->x[1] - pt_x[1];
resid[2] = fpt->x[2] - pt_x[2];
steep = jac[0]*resid[0] + jac[1]*resid[1] +
jac[2]*resid[2];
sr = steep*tmp->r;
if (!reject_prior_step_q(fpt, resid, tmp, tol))
{
if (sr<0)
{
const double rhess = resid[0]*hes[0] +
resid[1]*hes[1] +
resid[2]*hes[2];
newton_edge(fpt, jac, rhess,
resid, 0, tmp, tol);
}
else // sr==0
{
fpt->r = tmp->r;
fpt->dist2p = 0;
fpt->flags = tmp->flags | CONVERGED_FLAG;
}
}
}
MFEM_SYNC_THREAD;
break;
} // case 1
} //switch
if (fpt->flags & CONVERGED_FLAG)
{
break;
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
*tmp = *fpt;
}
MFEM_SYNC_THREAD;
} // for step<50
} // findpts_el
bool converged_internal =
((fpt->flags&FLAG_MASK) == CONVERGED_FLAG) &&
(fpt->dist2<dist2tol);
if (*code_i==CODE_NOT_FOUND || converged_internal ||
fpt->dist2<*dist2_i)
{
MFEM_FOREACH_THREAD(j,x,1)
{
*(el_base+i) = el;
*code_i = converged_internal?CODE_INTERNAL:CODE_BORDER;
*dist2_i = fpt->dist2;
*(r_base+i) = fpt->r;
}
MFEM_SYNC_THREAD;
if (converged_internal)
{
break;
}
}
} // findpts_local
} // obbox_test
} // elp
});
}
void FindPointsGSLIB::FindPointsEdgeLocal3(const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &code,
Array<unsigned int> &elem,
Vector &ref,
Vector &dist,
int npt)
{
if (npt == 0)
{
return;
}
MFEM_VERIFY(spacedim==3 && dim == 1,"Function for 3D edges only");
bool use_dev = point_pos.UseDevice();
auto pp = point_pos.Read(use_dev);
auto pgslm = gsl_mesh.Read(use_dev);
auto pwt = DEV.wtend.Read(use_dev);
auto pbb = DEV.bb.Read(use_dev);
auto plhm = DEV.lh_min.Read(use_dev);
auto plhf = DEV.lh_fac.Read(use_dev);
auto plho = DEV.lh_offset.ReadWrite(use_dev);
auto pcode = code.Write(use_dev);
auto pelem = elem.Write(use_dev);
auto pref = ref.Write(use_dev);
auto pdist = dist.Write(use_dev);
auto pgll1d = DEV.gll1d.ReadWrite(use_dev);
auto plc = DEV.lagcoeff.Read(use_dev);
double dist2tol = DEV.surf_dist_tol;
const bool obb_chk = obb_check;
switch (DEV.dof1d)
{
case 2:
FindPointsEdgeLocal3DKernel<2>(npt, DEV.newt_tol, dist2tol,
pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
case 3:
FindPointsEdgeLocal3DKernel<3>(npt, DEV.newt_tol, dist2tol,
pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
case 4:
FindPointsEdgeLocal3DKernel<4>(npt, DEV.newt_tol, dist2tol,
pp, point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc);
break;
default:
FindPointsEdgeLocal3DKernel(npt, DEV.newt_tol, dist2tol, pp,
point_pos_ordering, pgslm,
NE_split_total, pwt, pbb, obb_chk,
DEV.lh_nx, plhm, plhf, plho,
pcode, pelem, pref, pdist,
pgll1d, plc, DEV.dof1d);
break;
}
}
#undef rDIM2
#undef sDIM2
#undef rDIM
#undef sDIM
#undef CODE_INTERNAL
#undef CODE_BORDER
#undef CODE_NOT_FOUND
#else
void FindPointsGSLIB::FindPointsEdgeLocal3( const Vector &point_pos,
int point_pos_ordering,
Array<unsigned int> &code,
Array<unsigned int> &elem,
Vector &ref,
Vector &dist,
int npt ) {} ;
#endif
} // namespace mfem
#endif //ifdef MFEM_USE_GSLIB
File diff suppressed because it is too large Load Diff
-190
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@@ -1,190 +0,0 @@
#ifndef MFEM_GSLIB_KERNEL_HELPERS_HPP
#define MFEM_GSLIB_KERNEL_HELPERS_HPP
#include "../../config/config.hpp"
#include <cmath>
namespace mfem
{
namespace gslib
{
struct dbl_range_t
{
double min, max;
};
template <int SDIM>
struct obbox_t
{
double c0[SDIM], A[SDIM * SDIM];
dbl_range_t x[SDIM];
};
template <int SDIM>
struct findptsLocalHashData_t
{
int hash_n;
dbl_range_t bnd[SDIM];
double fac[SDIM];
unsigned int *offset;
};
// Eval the ith Lagrange interpolant at x.
MFEM_HOST_DEVICE inline void lagrange_eval(double *p0, double x,
int i, int p_Nq,
double *z, double *lagrangeCoeff)
{
double p_i = (1 << (p_Nq - 1));
for (int j = 0; j < p_Nq; ++j)
{
const double d_j = x - z[j];
p_i *= j == i ? 1 : d_j;
}
p0[i] = lagrangeCoeff[i] * p_i;
}
// Eval the ith Lagrange interpolant and its first derivative at x.
MFEM_HOST_DEVICE inline void lag_eval_first_der(double *p0, double x,
int i, const double *z,
const double *lCoeff,
int pN)
{
double u0 = 1, u1 = 0;
for (int j = 0; j < pN; ++j)
{
if (i != j)
{
const double d_j = 2 * (x - z[j]);
u1 = d_j * u1 + u0;
u0 = d_j * u0;
}
}
p0[i] = lCoeff[i] * u0;
p0[pN + i] = 2.0 * lCoeff[i] * u1;
}
// Eval the ith Lagrange interpolant and its first and second derivative at x.
MFEM_HOST_DEVICE inline void lag_eval_second_der(double *p0, double x,
int i, const double *z,
const double *lCoeff,
int pN)
{
double u0 = 1, u1 = 0, u2 = 0;
for (int j = 0; j < pN; ++j)
{
if (i != j)
{
const double d_j = 2 * (x - z[j]);
u2 = d_j * u2 + u1;
u1 = d_j * u1 + u0;
u0 = d_j * u0;
}
}
p0[i] = lCoeff[i] * u0;
p0[pN + i] = 2.0 * lCoeff[i] * u1;
p0[2 * pN + i] = 8.0 * lCoeff[i] * u2;
}
// Solve Ax=y where A is a symmetric 2x2 matrix packed as {a00, a01, a11}.
MFEM_HOST_DEVICE inline void lin_solve_sym_2(double x[2],
const double A[3],
const double y[2])
{
const double idet = 1 / (A[0] * A[2] - A[1] * A[1]);
x[0] = idet * (A[2] * y[0] - A[1] * y[1]);
x[1] = idet * (A[0] * y[1] - A[1] * y[0]);
}
// Positive when the point is inside the axis-aligned bounding box.
template <int SDIM>
MFEM_HOST_DEVICE inline double AABB_test(const obbox_t<SDIM> *const b,
const double (&x)[SDIM])
{
double test = 1.0;
for (int d = 0; d < SDIM; ++d)
{
const double b_d = (x[d] - b->x[d].min) * (b->x[d].max - x[d]);
test = test < 0.0 ? test : b_d;
}
return test;
}
// Positive when the point is inside the oriented bounding box.
template <int SDIM>
MFEM_HOST_DEVICE inline double bbox_test(const obbox_t<SDIM> *const b,
const double (&x)[SDIM])
{
const double bxyz = AABB_test(b, x);
if (bxyz < 0.0)
{
return bxyz;
}
double dxyz[SDIM];
for (int d = 0; d < SDIM; ++d)
{
dxyz[d] = x[d] - b->c0[d];
}
double test = 1.0;
for (int d = 0; d < SDIM; ++d)
{
double rst = 0.0;
for (int e = 0; e < SDIM; ++e)
{
rst += b->A[d * SDIM + e] * dxyz[e];
}
const double brst = (rst + 1.0) * (1.0 - rst);
test = test < 0.0 ? test : brst;
}
return test;
}
// Hash index in the hash table for the point x.
template <int SDIM>
MFEM_HOST_DEVICE inline int hash_index(
const findptsLocalHashData_t<SDIM> *const p,
const double (&x)[SDIM])
{
const int n = p->hash_n;
int sum = 0;
for (int d = SDIM - 1; d >= 0; --d)
{
sum *= n;
const int i = (int)floor((x[d] - p->bnd[d].min) * p->fac[d]);
sum += i < 0 ? 0 : (n - 1 < i ? n - 1 : i);
}
return sum;
}
// Squared Euclidean norm.
template <int SDIM>
MFEM_HOST_DEVICE inline double l2norm2(const double (&x)[SDIM])
{
double sum = 0.0;
for (int d = 0; d < SDIM; ++d)
{
sum += x[d] * x[d];
}
return sum;
}
template <int SDIM>
MFEM_HOST_DEVICE inline double l2norm2(const double *x)
{
double sum = 0.0;
for (int d = 0; d < SDIM; ++d)
{
sum += x[d] * x[d];
}
return sum;
}
} // namespace gslib
} // namespace mfem
#endif
-152
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@@ -1,152 +0,0 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#ifdef MFEM_USE_GSLIB
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wunused-function"
#endif
#include "gslib.h"
#ifndef GSLIB_RELEASE_VERSION //gslib v1.0.7
#define GSLIB_RELEASE_VERSION 10007
#endif
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
namespace mfem
{
#if GSLIB_RELEASE_VERSION >= 10009
#define CODE_INTERNAL 0
#define CODE_BORDER 1
#define CODE_NOT_FOUND 2
using gslib::lagrange_eval;
template<int T_D1D = 0>
static void InterpolateLocal1DKernel(const double *const gf_in,
int *const el,
double *const r,
double *const int_out,
const int npt,
const int nfields,
double *gll1D,
double *lagcoeff,
const int pN = 0)
{
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
const int D1D = T_D1D ? T_D1D : pN;
const int p_Nq = D1D;
MFEM_VERIFY(MD1 <= DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(D1D != 0, "Polynomial order not specified.");
// for each point of the npt points, create a thread block of size dof1Dsol
mfem::forall_2D(npt, D1D, 1, [=] MFEM_HOST_DEVICE (int i)
{
MFEM_SHARED double wtr[MD1];
MFEM_SHARED double sums[MD1];
// Evaluate basis functions at the reference space coordinates
MFEM_FOREACH_THREAD(j,x,D1D)
{
lagrange_eval(wtr, r[i], j, p_Nq, gll1D, lagcoeff);
}
MFEM_SYNC_THREAD;
for (int fld=0; fld<nfields; ++fld)
{
// If using GetNodalValues, ordering is NDOFS x NEL x VDIM and the
// offset would be `el[i] * p_Nq + fld * gf_offset`.
// R->Mult produces element vectors in NDOFS x VDIM x NEL layout.
const int elemOffset = el[i]*nfields*p_Nq + fld*p_Nq;
MFEM_FOREACH_THREAD(j,x,D1D)
{
sums[j] = wtr[j] * gf_in[elemOffset + j];
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(j,x,1)
{
double sumv = 0.0;
// sum the contributions of each lagrange polynomial
for (int jj=0; jj<D1D; ++jj)
{
sumv += sums[jj];
}
int_out[fld*npt + i] = sumv;
}
MFEM_SYNC_THREAD;
}
});
}
void FindPointsGSLIB::InterpolateLocal1( const Vector &field_in,
Array<int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &field_out,
int npt,
int ncomp,
int dof1Dsol )
{
MFEM_VERIFY(dim == 1, "Kernel for edges only.");
if (npt == 0) { return; }
bool use_dev = field_in.UseDevice();
auto pfin = field_in.Read(use_dev);
auto pgsl = gsl_elem_dev_l.ReadWrite(use_dev);
auto pgslr = gsl_ref_l.ReadWrite(use_dev);
auto pfout = field_out.Write(use_dev);
auto pgll = DEV.gll1d_sol.ReadWrite(use_dev);
auto plcf = DEV.lagcoeff_sol.ReadWrite(use_dev);
switch (dof1Dsol)
{
case 2:
InterpolateLocal1DKernel<2>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 3:
InterpolateLocal1DKernel<3>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 4:
InterpolateLocal1DKernel<4>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 5:
InterpolateLocal1DKernel<5>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
default:
InterpolateLocal1DKernel(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf, dof1Dsol);
break;
}
}
#undef CODE_INTERNAL
#undef CODE_BORDER
#undef CODE_NOT_FOUND
#else
void FindPointsGSLIB::InterpolateLocal1(const Vector &field_in,
Array<int> &gsl_elem_dev_l,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1Dsol) {};
#endif
} // namespace mfem
#endif //ifdef MFEM_USE_GSLIB
+41 -36
View File
@@ -11,7 +11,6 @@
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#ifdef MFEM_USE_GSLIB
@@ -33,7 +32,18 @@ namespace mfem
#define CODE_BORDER 1
#define CODE_NOT_FOUND 2
using gslib::lagrange_eval;
static MFEM_HOST_DEVICE void lagrange_eval(double *p0, double x,
int i, int p_Nq,
double *z, double *lagrangeCoeff)
{
double p_i = (1 << (p_Nq - 1));
for (int j = 0; j < p_Nq; ++j)
{
double d_j = x - z[j];
p_i *= j == i ? 1 : d_j;
}
p0[i] = lagrangeCoeff[i] * p_i;
}
template<int T_D1D = 0>
static void InterpolateLocal2DKernel(const double *const gf_in,
@@ -42,6 +52,8 @@ static void InterpolateLocal2DKernel(const double *const gf_in,
double *const int_out,
const int npt,
const int ncomp,
const int nel,
const int gf_offset,
double *gll1D,
double *lagcoeff,
const int pN = 0)
@@ -52,8 +64,6 @@ static void InterpolateLocal2DKernel(const double *const gf_in,
const int p_Np = D1D*D1D;
MFEM_VERIFY(MD1 <= DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
"Increase Max allowable polynomial order.");
MFEM_VERIFY(D1D != 0, "Polynomial order not specified.");
mfem::forall_2D(npt, D1D, D1D, [=] MFEM_HOST_DEVICE (int i)
{
@@ -72,9 +82,9 @@ static void InterpolateLocal2DKernel(const double *const gf_in,
for (int fld = 0; fld < Nfields; ++fld)
{
// If using GetNodalValues, ordering is NDOFS x NEL x VDIM and the
// offset would be `el[i] * p_Np + fld * gf_offset`.
// R->Mult produces element vectors in NDOFS x VDIM x NEL layout.
// If using GetNodalValues, ordering is NDOFSxNELxVDIM
// const int elemOffset = el[i] * p_Np + fld * gf_offset;
//if using R->Mult for L -> E-Vec use below: NDOFSxVDIMxNEL
const int elemOffset = el[i] * p_Np * Nfields + fld * p_Np;
MFEM_FOREACH_THREAD(j,x,D1D)
{
@@ -110,38 +120,33 @@ void FindPointsGSLIB::InterpolateLocal2(const Vector &field_in,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1Dsol)
int nel, int dof1Dsol)
{
if (npt == 0) { return; }
bool use_dev = field_in.UseDevice();
auto pfin = field_in.Read(use_dev);
auto pgsl = gsl_elem_dev_l.ReadWrite(use_dev);
auto pgslr = gsl_ref_l.ReadWrite(use_dev);
auto pfout = field_out.Write(use_dev);
auto pgll = DEV.gll1d_sol.ReadWrite(use_dev);
auto plcf = DEV.lagcoeff_sol.ReadWrite(use_dev);
const int gf_offset = field_in.Size()/ncomp;
auto pfin = field_in.Read();
auto pgsl = gsl_elem_dev_l.ReadWrite();
auto pgslr = gsl_ref_l.ReadWrite();
auto pfout = field_out.Write();
auto pgll = DEV.gll1d_sol.ReadWrite();
auto plcf = DEV.lagcoeff_sol.ReadWrite();
switch (dof1Dsol)
{
case 2:
InterpolateLocal2DKernel<2>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 3:
InterpolateLocal2DKernel<3>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 4:
InterpolateLocal2DKernel<4>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 5:
InterpolateLocal2DKernel<5>(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
default:
InterpolateLocal2DKernel(pfin, pgsl, pgslr, pfout,
npt, ncomp, pgll, plcf, dof1Dsol);
break;
case 2: return InterpolateLocal2DKernel<2>(pfin, pgsl, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
case 3: return InterpolateLocal2DKernel<3>(pfin, pgsl, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
case 4: return InterpolateLocal2DKernel<4>(pfin, pgsl, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
case 5: return InterpolateLocal2DKernel<5>(pfin, pgsl, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
default: return InterpolateLocal2DKernel(pfin, pgsl, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf, dof1Dsol);
}
}
@@ -155,7 +160,7 @@ void FindPointsGSLIB::InterpolateLocal2(const Vector &field_in,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1Dsol) {};
int nel, int dof1Dsol) {};
#endif
} // namespace mfem
+41 -35
View File
@@ -11,7 +11,6 @@
#include "../gslib.hpp"
#include "../../general/forall.hpp"
#include "gslib_kernel_helpers.hpp"
#ifdef MFEM_USE_GSLIB
@@ -33,7 +32,18 @@ namespace mfem
#define CODE_BORDER 1
#define CODE_NOT_FOUND 2
using gslib::lagrange_eval;
static MFEM_HOST_DEVICE void lagrange_eval(double *p0, double x,
int i, int p_Nq,
double *z, double *lagrangeCoeff)
{
double p_i = (1 << (p_Nq - 1));
for (int j = 0; j < p_Nq; ++j)
{
double d_j = x - z[j];
p_i *= j == i ? 1 : d_j;
}
p0[i] = lagrangeCoeff[i] * p_i;
}
template<int T_D1D = 0>
static void InterpolateLocal3DKernel(const double *const gf_in,
@@ -42,6 +52,8 @@ static void InterpolateLocal3DKernel(const double *const gf_in,
double *const int_out,
const int npt,
const int ncomp,
const int nel,
const int gf_offset,
double *gll1D,
double *lagcoeff,
const int pN = 0)
@@ -72,9 +84,9 @@ static void InterpolateLocal3DKernel(const double *const gf_in,
for (int fld = 0; fld < Nfields; ++fld)
{
// If using GetNodalValues, ordering is NDOFS x NEL x VDIM and the
// offset would be `el[i] * p_Np + fld * gf_offset`.
// R->Mult produces element vectors in NDOFS x VDIM x NEL layout.
// If using GetNodalValues, ordering is NDOFSxNELxVDIM
// const int elemOffset = el[i] * p_Np + fld * gf_offset;
//if using R->Mult for L -> E-Vec use below.
const int elemOffset = el[i] * p_Np * Nfields + fld * p_Np;
MFEM_FOREACH_THREAD(j,x,D1D)
{
@@ -113,43 +125,37 @@ void FindPointsGSLIB::InterpolateLocal3(const Vector &field_in,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1Dsol)
int nel, int dof1Dsol)
{
if (npt == 0) { return; }
bool use_dev = field_in.UseDevice();
auto pfin = field_in.Read(use_dev);
auto pgsle = gsl_elem_dev_l.ReadWrite(use_dev);
auto pgslr = gsl_ref_l.ReadWrite(use_dev);
auto pfout = field_out.Write(use_dev);
auto pgll = DEV.gll1d_sol.ReadWrite(use_dev);
auto plcf = DEV.lagcoeff_sol.ReadWrite(use_dev);
const int gf_offset = field_in.Size()/ncomp;
auto pfin = field_in.Read();
auto pgsle = gsl_elem_dev_l.ReadWrite();
auto pgslr = gsl_ref_l.ReadWrite();
auto pfout = field_out.Write();
auto pgll = DEV.gll1d_sol.ReadWrite();
auto plcf = DEV.lagcoeff_sol.ReadWrite();
switch (dof1Dsol)
{
case 2:
InterpolateLocal3DKernel<2>(pfin, pgsle, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 3:
InterpolateLocal3DKernel<3>(pfin, pgsle, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 4:
InterpolateLocal3DKernel<4>(pfin, pgsle, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
case 5:
InterpolateLocal3DKernel<5>(pfin, pgsle, pgslr, pfout,
npt, ncomp, pgll, plcf);
break;
default:
InterpolateLocal3DKernel(pfin, pgsle, pgslr, pfout,
npt, ncomp, pgll, plcf, dof1Dsol);
break;
case 2: return InterpolateLocal3DKernel<2>(pfin, pgsle, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
case 3: return InterpolateLocal3DKernel<3>(pfin, pgsle, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
case 4: return InterpolateLocal3DKernel<4>(pfin, pgsle, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
case 5: return InterpolateLocal3DKernel<5>(pfin, pgsle, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf);
default: return InterpolateLocal3DKernel(pfin, pgsle, pgslr, pfout,
npt, ncomp, nel, gf_offset,
pgll, plcf, dof1Dsol);
}
}
#undef MAXC
#undef CODE_INTERNAL
#undef CODE_BORDER
#undef CODE_NOT_FOUND
@@ -159,7 +165,7 @@ void FindPointsGSLIB::InterpolateLocal3(const Vector &field_in,
Vector &gsl_ref_l,
Vector &field_out,
int npt, int ncomp,
int dof1Dsol) {};
int nel, int dof1Dsol) {};
#endif
} // namespace mfem
-2
View File
@@ -178,8 +178,6 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
// Assumes tensor-product elements
Mesh *mesh = fes.GetMesh();
const FiniteElement &el = *fes.GetTypicalFE();
MFEM_VERIFY(el.GetMapType() == FiniteElement::VALUE,
"Only value map type currently supported");
ElementTransformation &Trans = *mesh->GetTypicalElementTransformation();
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, Trans);
if (DeviceCanUseCeed())
@@ -10,7 +10,6 @@
// CONTRIBUTING.md for details.
#include "bilininteg_diffusion_kernels.hpp"
#include "bilininteg_diffusion_pa_simplices.hpp" // IWYU pragma: keep
namespace mfem
{
@@ -20,13 +19,6 @@ namespace mfem
DiffusionIntegrator::Kernels::Kernels()
{
// 2D
// Q = P, only for simplex
DiffusionIntegrator::AddSimplexSpecialization<2,2,1>();
DiffusionIntegrator::AddSimplexSpecialization<2,3,2>();
DiffusionIntegrator::AddSimplexSpecialization<2,4,3>();
DiffusionIntegrator::AddSimplexSpecialization<2,5,4>();
DiffusionIntegrator::AddSimplexSpecialization<2,6,5>();
DiffusionIntegrator::AddSimplexSpecialization<2,7,6>();
// Q = P+1
DiffusionIntegrator::AddSpecialization<2,1,1>();
DiffusionIntegrator::AddSpecialization<2,2,2>();
@@ -48,18 +40,7 @@ DiffusionIntegrator::Kernels::Kernels()
DiffusionIntegrator::AddSpecialization<2,8,9>();
DiffusionIntegrator::AddSpecialization<2,9,10>();
// others
DiffusionIntegrator::AddSimplexSpecialization<2,2,5>();
DiffusionIntegrator::AddSimplexSpecialization<2,3,6>();
// 3D
// Q = P, only for simplex
DiffusionIntegrator::AddSimplexSpecialization<3,2,1>();
DiffusionIntegrator::AddSimplexSpecialization<3,3,2>();
DiffusionIntegrator::AddSimplexSpecialization<3,4,3>();
DiffusionIntegrator::AddSimplexSpecialization<3,5,4>();
DiffusionIntegrator::AddSimplexSpecialization<3,6,5>();
DiffusionIntegrator::AddSimplexSpecialization<3,7,6>();
DiffusionIntegrator::AddSimplexSpecialization<3,8,7>();
// Q = P+1
DiffusionIntegrator::AddSpecialization<3,1,1>();
DiffusionIntegrator::AddSpecialization<3,2,2>();
+16 -21
View File
@@ -12,6 +12,7 @@
#ifndef MFEM_BILININTEG_DIFFUSION_KERNELS_HPP
#define MFEM_BILININTEG_DIFFUSION_KERNELS_HPP
#include "../kernel_dispatch.hpp"
#include "../../config/config.hpp"
#include "../../general/array.hpp"
#include "../../general/forall.hpp"
@@ -19,8 +20,6 @@
#include "../../linalg/vector.hpp"
#include "../bilininteg.hpp"
#include "bilininteg_diffusion_pa_simplices.hpp"
namespace mfem
{
@@ -638,8 +637,8 @@ inline void SmemPADiffusionApply2D(const int NE,
const bool symmetric,
const Array<real_t> &b_,
const Array<real_t> &g_,
const Array<real_t> &,
const Array<real_t> &,
const Array<real_t> &bt_,
const Array<real_t> &gt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
@@ -1219,47 +1218,43 @@ inline void SmemPADiffusionApply3D(const int NE,
namespace
{
using ApplyKernelType = DiffusionIntegrator::ApplyKernelType;
using ApplySimplexKernelType = DiffusionIntegrator::ApplySimplexKernelType;
using DiagonalKernelType = DiffusionIntegrator::DiagonalKernelType;
}
template<int DIM, int D1D, int Q1D>
template<int DIM, int T_D1D, int T_Q1D>
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Kernel()
{
if constexpr (DIM == 2) { return internal::SmemPADiffusionApply2D<D1D, Q1D>; }
else if constexpr (DIM == 3) { return internal::SmemPADiffusionApply3D<D1D, Q1D>; }
else { MFEM_ABORT(""); }
return nullptr;
if constexpr (DIM == 2) { return internal::SmemPADiffusionApply2D<T_D1D,T_Q1D>; }
else if constexpr (DIM == 3) { return internal::SmemPADiffusionApply3D<T_D1D, T_Q1D>; }
MFEM_ABORT("");
}
inline
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Fallback(int dim, int, int)
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Fallback(int DIM, int, int)
{
if (dim == 2) { return internal::PADiffusionApply2D; }
else if (dim == 3) { return internal::PADiffusionApply3D; }
if (DIM == 2) { return internal::PADiffusionApply2D; }
else if (DIM == 3) { return internal::PADiffusionApply3D; }
else { MFEM_ABORT(""); }
}
template<int DIM, int D1D, int Q1D>
DiagonalKernelType DiffusionIntegrator::DiagonalPAKernels::Kernel()
{
if constexpr (DIM == 2) { return internal::SmemPADiffusionDiagonal2D<D1D, Q1D>; }
if constexpr (DIM == 2) { return internal::SmemPADiffusionDiagonal2D<D1D,Q1D>; }
else if constexpr (DIM == 3) { return internal::SmemPADiffusionDiagonal3D<D1D, Q1D>; }
else { MFEM_ABORT(""); }
return nullptr;
MFEM_ABORT("");
}
inline DiagonalKernelType
DiffusionIntegrator::DiagonalPAKernels::Fallback(int dim, int, int)
DiffusionIntegrator::DiagonalPAKernels::Fallback(int DIM, int, int)
{
if (dim == 2) { return internal::PADiffusionDiagonal2D; }
else if (dim == 3) { return internal::PADiffusionDiagonal3D; }
if (DIM == 2) { return internal::PADiffusionDiagonal2D; }
else if (DIM == 3) { return internal::PADiffusionDiagonal3D; }
else { MFEM_ABORT(""); }
return nullptr;
}
/// \endcond DO_NOT_DOCUMENT
} // namespace mfem
#endif
+2 -31
View File
@@ -15,7 +15,6 @@
#include "../../mesh/nurbs.hpp"
#include "../ceed/integrators/diffusion/diffusion.hpp"
#include "bilininteg_diffusion_kernels.hpp"
#include "bilininteg_diffusion_pa_simplices.hpp"
namespace mfem
{
@@ -69,24 +68,6 @@ void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
}
#endif // MFEM_USE_OCCA
if (fespace->UsesRaggedTensorBasis())
{
const auto *rmaps = static_cast<const RaggedDofToQuad*>(maps);
return ApplySimplexPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric,
rmaps->lex_map,
rmaps->forward_map2d_diff,
rmaps->inverse_map2d_diff,
rmaps->forward_map3d_diff,
rmaps->inverse_map3d_diff,
rmaps->Ga1,
rmaps->Ga2,
rmaps->Ga3,
rmaps->Ga1t,
rmaps->Ga2t,
rmaps->Ga3t,
Dv, x, y, dofs1D, quad1D);
}
ApplyPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric, B, G, Bt,
Gt, Dv, x, y, dofs1D, quad1D);
}
@@ -113,8 +94,7 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
fespace = &fes;
Mesh *mesh = fes.GetMesh();
const FiniteElement &el = *fes.GetTypicalFE();
const bool stroud = fes.UsesRaggedTensorBasis();
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, stroud);
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el);
if (DeviceCanUseCeed())
{
delete ceedOp;
@@ -139,22 +119,13 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
dim = mesh->Dimension();
ne = fes.GetNE();
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS, mt);
if (stroud)
{
maps = &el.GetDofToQuad(*ir, DofToQuad::RAGGED_TENSOR);
}
else
{
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
}
const int sdim = mesh->SpaceDimension();
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
dofs1D = maps->ndof;
quad1D = maps->nqpt;
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(qs, CoefficientStorage::COMPRESSED);
// QuadratureSpace expects ir defined in reference simplex for Bernstein
// elements with partial assembly
if (MQ) { coeff.ProjectTranspose(*MQ); }
else if (VQ) { coeff.Project(*VQ); }
File diff suppressed because it is too large Load Diff
+3 -3
View File
@@ -91,15 +91,15 @@ void ElasticityAddMultPA(const int dim, const int nDofs,
void ElasticityAssembleDiagonalPA(const int dim, const int nDofs,
const CoefficientVector &lambda,
const CoefficientVector &mu, const GeometricFactors &geom,
const DofToQuad &maps, const IntegrationRule &ir, Vector &diag)
const DofToQuad &maps, QuadratureFunction &QVec, Vector &diag)
{
switch (dim)
{
case 2:
ElasticityAssembleDiagonalPA_<2>(nDofs, lambda, mu, geom, maps, ir, diag);
ElasticityAssembleDiagonalPA_<2>(nDofs, lambda, mu, geom, maps, QVec, diag);
break;
case 3:
ElasticityAssembleDiagonalPA_<3>(nDofs, lambda, mu, geom, maps, ir, diag);
ElasticityAssembleDiagonalPA_<3>(nDofs, lambda, mu, geom, maps, QVec, diag);
break;
default:
MFEM_ABORT("Only dimensions 2 and 3 supported.");

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