Compare commits
11
Commits
| Author | SHA1 | Date | |
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007183c70a | ||
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0e63fc90e3 | ||
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06cb917637 | ||
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db97637c09 | ||
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cbaf930388 | ||
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b53dd0fea1 | ||
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acf167ed86 | ||
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8a8ac07910 | ||
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c2d5eed541 | ||
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f8e71cf89c |
@@ -94,16 +94,6 @@ inputs:
|
||||
description: If true, do not set any CXXFLAGS or LDFLAGS.
|
||||
default: false
|
||||
|
||||
# Unfortunately, "uses:" fields cannot have references to variables like
|
||||
# ${{env.MFEM_ACTIONS_VERSION}}, so the branch/tag name has to be hard coded.
|
||||
# Therefore, in the future, when updating the version of the
|
||||
# mfem/github-actions to use, we'll have to replace:
|
||||
# - all definitions of MFEM_ACTIONS_VERSION and
|
||||
# - all "uses:" fields that refer to mfem/github-actions.
|
||||
MFEM_ACTIONS_VERSION:
|
||||
description: Version (branch or tag) of the mfem/github-actions to use.
|
||||
default: v2.7
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
@@ -128,7 +118,6 @@ runs:
|
||||
echo UBSAN_LDFLAGS=${{inputs.UBSAN_LDFLAGS}} >> $GITHUB_ENV
|
||||
echo MSAN_CXXFLAGS=${{inputs.MSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
echo MSAN_LDFLAGS=${{inputs.MSAN_LDFLAGS}} >> $GITHUB_ENV
|
||||
echo MFEM_ACTIONS_VERSION=${{inputs.MFEM_ACTIONS_VERSION}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Env (dir)
|
||||
|
||||
@@ -25,7 +25,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v5
|
||||
- uses: actions/cache@v4
|
||||
if: ${{env.DEBUG == 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
@@ -53,7 +53,7 @@ runs:
|
||||
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- uses: mfem/github-actions/build-mfem@v2.7
|
||||
- uses: mfem/github-actions/build-mfem@v2.5
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
env:
|
||||
CXXFLAGS: ${{env.CXXFLAGS}}
|
||||
@@ -82,7 +82,7 @@ runs:
|
||||
run: find . -type f -name '*.o' -delete
|
||||
shell: bash
|
||||
|
||||
- uses: actions/upload-artifact@v7
|
||||
- uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build
|
||||
|
||||
@@ -12,11 +12,6 @@
|
||||
name: 'Install MPI'
|
||||
description: 'Installs MPI and set up its environment variables'
|
||||
|
||||
inputs:
|
||||
NO_FLAGS:
|
||||
description: If true, do not set any CXXFLAGS or LDFLAGS.
|
||||
default: false
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
@@ -32,7 +27,6 @@ runs:
|
||||
shell: bash
|
||||
|
||||
- name: Env (bis)
|
||||
if: ${{ inputs.NO_FLAGS != 'true' }}
|
||||
run: |
|
||||
echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MPI_INC}} >> $GITHUB_ENV
|
||||
echo LDFLAGS=${{env.LDFLAGS}} ${{env.MPI_LIB}} >> $GITHUB_ENV
|
||||
|
||||
@@ -36,7 +36,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v5
|
||||
- uses: actions/cache@v4
|
||||
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
@@ -49,7 +49,7 @@ runs:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
|
||||
- uses: actions/download-artifact@v8
|
||||
- uses: actions/download-artifact@v4
|
||||
with:
|
||||
name: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build
|
||||
|
||||
@@ -23,7 +23,7 @@ inputs:
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: actions/cache/restore@v5 # Cache for LLVM libcxx
|
||||
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
@@ -32,32 +32,32 @@ runs:
|
||||
- uses: ./.github/actions/sanitize/mpi
|
||||
if: ${{inputs.par == 'true'}}
|
||||
|
||||
- uses: actions/cache/restore@v5 # Cache for Hypre
|
||||
- uses: actions/cache/restore@v4 # Cache for Hypre
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-${{env.MFEM_ACTIONS_VERSION}}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
- uses: actions/cache/restore@v5 # Cache for Metis
|
||||
- uses: actions/cache/restore@v4 # Cache for Metis
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-${{env.MFEM_ACTIONS_VERSION}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
|
||||
- name: Hypre/Metis links
|
||||
if: ${{inputs.par == 'true'}}
|
||||
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
|
||||
shell: bash
|
||||
|
||||
- uses: actions/cache/restore@v5 # Cache for LSAN suppression file
|
||||
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
- uses: actions/checkout@v6 # Checkout the repository
|
||||
- uses: actions/checkout@v4 # Checkout the repository
|
||||
with:
|
||||
path: mfem
|
||||
# ref: ${{env.BRANCH}}
|
||||
|
||||
@@ -1,42 +0,0 @@
|
||||
# MFEM Pull Request Review Agent Guide
|
||||
|
||||
## Purpose and scope
|
||||
Review MFEM PRs for correctness, maintainability, performance, portability, test coverage, and MFEM consistency. Use the diff and PR context; reference source files, tests, and CI results when available. Follow `CONTRIBUTING.md`, especially Developer Guidelines, PR rules, checklist, and testing.
|
||||
|
||||
## Critical review pillars
|
||||
- Correctness and numerical behavior
|
||||
- API and user-facing impact
|
||||
- Performance implications
|
||||
- Maintainability and portability
|
||||
|
||||
## Review workflow
|
||||
1. Read the PR description, linked issues, and intended behavior.
|
||||
2. Inspect the diff before commenting.
|
||||
3. Identify affected MFEM components, examples, tests, build or docs changes, and downstream APIs.
|
||||
4. Analyze the code against the critical review pillars.
|
||||
5. Compare the change against nearby code and MFEM patterns; flag unmotivated deviations.
|
||||
6. Check whether tests and documentation were updated appropriately.
|
||||
7. Review CI results and suggest actions.
|
||||
8. Produce a structured review with prioritized findings.
|
||||
9. Always limit conclusions to available evidence.
|
||||
|
||||
## MFEM-specific review checklist
|
||||
- Component-aware scope: identify the touched subsystem (FEM, solvers, preconditioners, linear algebra, mesh, examples, miniapps, build, or docs) and assess its impact against the review pillars.
|
||||
- Numerical and algorithmic behavior: assess issues in convergence, stability, tolerances, precision, iteration limits, and failure handling. If clear opportunities exist to improve the algorithmic approach, call them out with expected impact.
|
||||
- API and user-facing impact: assess backward compatibility, user-visible behavior and default changes, migration impact, deprecations, and whether documentation clearly explains user-facing API changes.
|
||||
- Data structure and memory semantics: assess ownership, lifetime, aliasing, container behavior, and device-host synchronization.
|
||||
- Parallel and serial behavior: assess whether the change preserves equivalent semantics in serial and parallel modes where applicable; if logic is currently mode-specific, check whether extension to the other mode is straightforward (clear abstractions, no hard-wired assumptions), document constraints, and call out expected behavior differences explicitly.
|
||||
- Backend and portability impact: assess likely cross-backend risks in CPU, CUDA, HIP, OCCA, RAJA, partial assembly, fallback paths, compiler compatibility, and platform assumptions.
|
||||
- Build, dependency, and configuration impact: assess CMake or make changes, optional dependency behavior, and feature-flag interactions.
|
||||
- Tests and docs alignment: check available regression or unit coverage evidence for changed behavior, and ensure docs are updated for new flags, APIs, options, or behavior changes.
|
||||
- MFEM developer-guideline fit: keep code lean, simple, general, logically separated, and portable; suggest C++17 improvements when they clearly improve safety, clarity, or maintainability.
|
||||
- New source files, examples, or miniapps: if a PR adds source/header files, verify they are properly wired into the relevant `makefile` and `CMakeLists.txt`, referenced in docs where applicable (including `doc/CodeDocumentation.dox`), and added to top-level `.gitignore` only when generated artifacts require it.
|
||||
- Changelog: verify `CHANGELOG` is updated if the PR introduces significant new features or user-facing changes.
|
||||
- MFEM conventions: use `real_t`; use `mfem::out`/`mfem::err` instead of `std::cout`/`std::cerr` in library code; flag large/binary files; if AI assistance is apparent but undisclosed, suggest following `CONTRIBUTING.md`.
|
||||
- Edge cases: if the PR touches complex or error-prone areas, suggest additional tests for edge cases, failure modes, and parallel behavior.
|
||||
|
||||
## Commenting guidelines
|
||||
- Keep comments concise, actionable, and grounded in the diff.
|
||||
- Focus on correctness, behavior changes, and user impact over style nits.
|
||||
- Be professional, concise, collaborative, technically precise, and avoid unsupported assumptions.
|
||||
|
||||
@@ -13,7 +13,7 @@ Note that some of these scripts use the shared MFEM GitHub Actions from the exte
|
||||
|
||||
<https://github.com/mfem/github-actions>
|
||||
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch (or tag) in the above from which the action is taken.
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch in the above from which the action is taken.
|
||||
|
||||
The current CI workflows are:
|
||||
|
||||
@@ -29,12 +29,16 @@ Runs a number of static repository-level sanity checks.
|
||||
|
||||
- `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
|
||||
|
||||
## `mfem-analysis.yml` (`build-analysis`)
|
||||
|
||||
Checks if the code builds and satisfies minimal requirements.
|
||||
|
||||
- `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
|
||||
|
||||
## `builds-and-tests.yml`
|
||||
|
||||
Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
|
||||
|
||||
One matrix job runs `tests/scripts/gitignore` after `make test-noclean` to check generated artifacts against `.gitignore`.
|
||||
|
||||
Uses the following GitHub Actions from <https://github.com/mfem/github-actions>:
|
||||
|
||||
- `mfem/github-actions/build-hypre`
|
||||
|
||||
@@ -43,7 +43,7 @@ jobs:
|
||||
remove-docker-images: 'true'
|
||||
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Set Environment
|
||||
|
||||
@@ -40,7 +40,6 @@ env:
|
||||
METIS_ARCHIVE_MAC: metis-4.0.3-mac.tgz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
MFEM_TOP_DIR: mfem
|
||||
MFEM_ACTIONS_VERSION: v2.7
|
||||
|
||||
# Note for future improvements:
|
||||
#
|
||||
@@ -111,7 +110,6 @@ jobs:
|
||||
build-system: make
|
||||
hypre-target: int64
|
||||
precision: fp64
|
||||
gitignore-check: YES
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
@@ -142,10 +140,6 @@ jobs:
|
||||
|
||||
continue-on-error: ${{ matrix.enzyme && true || false }}
|
||||
|
||||
# Enable ccache for all jobs except Windows (would need sccache).
|
||||
env:
|
||||
USE_CCACHE: ${{ matrix.os != 'windows-latest' }}
|
||||
|
||||
steps:
|
||||
# Fix 'No space left on device' errors for Ubuntu builds.
|
||||
- name: Run Actions Cleaner
|
||||
@@ -159,7 +153,7 @@ jobs:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
@@ -176,6 +170,20 @@ jobs:
|
||||
env
|
||||
shell: bash
|
||||
|
||||
# For info on Xcode see:
|
||||
# - https://github.com/actions/runner-images/issues/12541
|
||||
# - https://github.com/actions/runner-images/blob/releases/macos-15-arm64/20250811/images/macos/macos-15-arm64-Readme.md#xcode
|
||||
- name: Xcode version setup (MacOS)
|
||||
if: matrix.os == 'macos-latest'
|
||||
run: |
|
||||
XCODE_PATH="/Applications/Xcode_16.4.app"
|
||||
echo "> sudo xcode-select -s ${XCODE_PATH}"
|
||||
sudo xcode-select -s ${XCODE_PATH}
|
||||
echo "> g++ -v"
|
||||
g++ -v
|
||||
echo "> clang++ -v"
|
||||
clang++ -v
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
@@ -217,14 +225,14 @@ jobs:
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-${{ env.MFEM_ACTIONS_VERSION }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.7
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -234,7 +242,7 @@ jobs:
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.7
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -247,14 +255,14 @@ jobs:
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-${{ env.MFEM_ACTIONS_VERSION }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.7
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
@@ -262,7 +270,7 @@ jobs:
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
@@ -287,62 +295,15 @@ jobs:
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew update
|
||||
brew install enzyme
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required.*:.*\(llvm[^ ]*\).*/\1/p')
|
||||
echo "ENZYME_LLVM=$ENZYME_LLVM"
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
|
||||
LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
|
||||
echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
|
||||
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
|
||||
echo "OMPI_CXX=$LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
|
||||
|
||||
# Restore the compiler cache (ccache). The key embeds the run id, so new
|
||||
# runs save a fresh snapshot; the restore-keys prefix warm-starts from the
|
||||
# most recent prior run (incl. the base branch for PRs).
|
||||
- name: cache ccache
|
||||
if: ${{ env.USE_CCACHE == 'true' }}
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: .ccache
|
||||
key: ccache-${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}-${{ github.run_id }}
|
||||
restore-keys: |
|
||||
ccache-${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}-
|
||||
|
||||
# Configure ccache and select how it is injected into the MFEM build:
|
||||
# - make: set CXX="ccache g++"; for MPI, OMPI_CXX="ccache g++" so mpicxx
|
||||
# runs ccache around g++ (not ccache around the mpicxx wrapper).
|
||||
# - cmake: set CMAKE_<LANG>_COMPILER_LAUNCHER=ccache.
|
||||
# - enzyme: wrap the brew clang++ via OMPI_CXX.
|
||||
# The chosen options are passed through build-mfem's 'config-options'
|
||||
# input (see the build step below).
|
||||
- name: configure ccache
|
||||
if: ${{ env.USE_CCACHE == 'true' }}
|
||||
run: |
|
||||
command -v ccache >/dev/null 2>&1 || {
|
||||
if [[ "${{ runner.os }}" == "Linux" ]]; then
|
||||
sudo apt-get update && sudo apt-get install -y ccache
|
||||
else
|
||||
brew install ccache
|
||||
fi
|
||||
}
|
||||
echo "CCACHE_DIR=${{ github.workspace }}/.ccache" >> $GITHUB_ENV
|
||||
echo "CCACHE_MAXSIZE=1G" >> $GITHUB_ENV
|
||||
echo "CCACHE_COMPILERCHECK=content" >> $GITHUB_ENV
|
||||
# Ignore header timestamps (restamped by each checkout) so direct mode hits.
|
||||
echo "CCACHE_SLOPPINESS=include_file_mtime,include_file_ctime,time_macros" >> $GITHUB_ENV
|
||||
# Hash absolute paths relative to the workspace.
|
||||
echo "CCACHE_BASEDIR=${{ github.workspace }}" >> $GITHUB_ENV
|
||||
if [[ "${{ matrix.enzyme }}" == "true" ]]; then
|
||||
echo "OMPI_CXX=ccache $LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
|
||||
elif [[ "${{ matrix.build-system }}" == "cmake" ]]; then
|
||||
echo 'CCACHE_CONFIG_OPTS=-DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_C_COMPILER_LAUNCHER=ccache' >> $GITHUB_ENV
|
||||
else
|
||||
echo "OMPI_CXX=ccache g++" >> $GITHUB_ENV
|
||||
echo 'CCACHE_CONFIG_OPTS=CXX="ccache g++" MPICXX="mpicxx"' >> $GITHUB_ENV
|
||||
fi
|
||||
shell: bash
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.7
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -355,14 +316,9 @@ jobs:
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
precision: ${{ matrix.precision }}
|
||||
config-options: ${{ matrix.config-opts }} ${{ env.CCACHE_CONFIG_OPTS }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
|
||||
|
||||
- name: ccache stats
|
||||
if: ${{ env.USE_CCACHE == 'true' }}
|
||||
run: ccache -s
|
||||
shell: bash
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
- name: checks
|
||||
if: matrix.build-system == 'make' && matrix.target == 'dbg'
|
||||
@@ -373,13 +329,7 @@ jobs:
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }}
|
||||
if [[ "${{ matrix.gitignore-check }}" == "YES" ]]; then
|
||||
make test-noclean
|
||||
else
|
||||
make test
|
||||
fi
|
||||
shell: bash
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make test
|
||||
|
||||
- name: cmake checks
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
|
||||
@@ -424,16 +374,8 @@ jobs:
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.7
|
||||
uses: mfem/github-actions/upload-coverage@v2.5
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
env:
|
||||
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
|
||||
|
||||
- name: gitignore
|
||||
if: matrix.gitignore-check == 'YES'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }}/tests/scripts
|
||||
./runtest gitignore
|
||||
|
||||
@@ -1,42 +0,0 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
# A closed PR's caches can never be restored again, so delete them to free
|
||||
# space against the 10 GB per-repo cache limit.
|
||||
name: Cleanup PR caches
|
||||
|
||||
on:
|
||||
pull_request:
|
||||
types: [closed]
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
jobs:
|
||||
cleanup:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: Delete caches for the closed PR
|
||||
env:
|
||||
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
GH_REPO: ${{ github.repository }}
|
||||
PR_REF: refs/pull/${{ github.event.pull_request.number }}/merge
|
||||
run: |
|
||||
echo "Deleting caches for $PR_REF"
|
||||
while :; do
|
||||
ids=$(gh cache list --ref "$PR_REF" --limit 100 --json id --jq '.[].id')
|
||||
[ -n "$ids" ] || break
|
||||
echo "$ids" | while read -r id; do
|
||||
[ -n "$id" ] || continue
|
||||
echo "Deleting cache $id"
|
||||
gh cache delete "$id" || echo " (already gone)"
|
||||
done
|
||||
done
|
||||
@@ -14,19 +14,9 @@ name: "Static Analysis"
|
||||
on:
|
||||
push:
|
||||
branches: ["master", "next"]
|
||||
paths-ignore: &docs-only-paths
|
||||
- "**/*.md"
|
||||
- "doc/**"
|
||||
- ".binder/**"
|
||||
- "CITATION.cff"
|
||||
- "LICENSE"
|
||||
- "NOTICE"
|
||||
- "CHANGELOG"
|
||||
- "INSTALL"
|
||||
pull_request:
|
||||
# The branches below must be a subset of the branches above
|
||||
branches: ["master"]
|
||||
paths-ignore: *docs-only-paths
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
@@ -50,11 +40,11 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v4
|
||||
uses: github/codeql-action/init@v2
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
@@ -67,7 +57,7 @@ jobs:
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v4
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
@@ -80,4 +70,4 @@ jobs:
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v4
|
||||
uses: github/codeql-action/analyze@v2
|
||||
|
||||
@@ -0,0 +1,100 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Build Analysis"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
cancel-in-progress: true
|
||||
|
||||
env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
COVERAGE_ENV: mfem-coverage
|
||||
|
||||
jobs:
|
||||
gitignore:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v4
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install openmpi-bin libopenmpi-dev
|
||||
export OMPI_MCA_rmaps_base_oversubscribe=1
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: int32
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: mfem
|
||||
|
||||
- name: test (no clean)
|
||||
run: |
|
||||
cd mfem && make test-noclean
|
||||
|
||||
- name: gitignore
|
||||
run: |
|
||||
cd mfem/tests/scripts
|
||||
./runtest gitignore
|
||||
@@ -13,7 +13,6 @@ name: "Checks"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
pull-requests: read
|
||||
|
||||
on:
|
||||
push:
|
||||
@@ -30,11 +29,6 @@ concurrency:
|
||||
# by checking if the workflow trigger is 'push' ("github.event_name == 'push'")
|
||||
# and if we are in a fork ("github.event.pull_request.head.repo.full_name !=
|
||||
# github.repository").
|
||||
#
|
||||
# The logic for the branch-history check is slightly different, since that check
|
||||
# also inspects the PR's labels to allow for overriding failures. In this case,
|
||||
# we run on all 'pull_request' triggers, but only run for 'push' triggers that
|
||||
# do not correspond to any open PRs.
|
||||
|
||||
jobs:
|
||||
file-headers-check:
|
||||
@@ -44,7 +38,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
@@ -99,7 +93,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
@@ -116,7 +110,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
@@ -134,35 +128,18 @@ jobs:
|
||||
|
||||
branch-history:
|
||||
if: |
|
||||
github.ref != 'refs/heads/next' && github.ref != 'refs/heads/master'
|
||||
github.ref != 'refs/heads/next' &&
|
||||
github.ref != 'refs/heads/master' &&
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: check for pull request
|
||||
id: check_pr
|
||||
if: github.event_name == 'push'
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
run: |
|
||||
pr_exists=$(gh pr list --repo "$GITHUB_REPOSITORY" \
|
||||
--head "$GITHUB_REF_NAME" \
|
||||
--state open \
|
||||
--json number \
|
||||
--jq 'length > 0')
|
||||
echo "pr_exists=$pr_exists" >> "$GITHUB_OUTPUT"
|
||||
|
||||
- name: branch-history
|
||||
id: branch_history
|
||||
if: |
|
||||
(github.event_name == 'pull_request' ||
|
||||
github.event_name == 'workflow_dispatch' ||
|
||||
steps.check_pr.outputs.pr_exists == 'false')
|
||||
continue-on-error: ${{ contains(github.event.pull_request.labels.*.name,
|
||||
'branch-history-override') }}
|
||||
run: |
|
||||
# We override origin to make sure we point to the main repo.
|
||||
# This is to have consistent test results on PRs from forks.
|
||||
@@ -170,9 +147,3 @@ jobs:
|
||||
git remote add origin https://github.com/mfem/mfem.git
|
||||
git checkout -b gh-actions-branch-history
|
||||
./config/githooks/pre-push --history
|
||||
|
||||
- name: report branch-history override
|
||||
if: steps.branch_history.outcome == 'failure'
|
||||
run: |
|
||||
echo "::warning::branch-history check failed, but the" \
|
||||
"'branch-history-override' label is set."
|
||||
|
||||
@@ -17,24 +17,20 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 2.19.0
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-${{ env.MFEM_ACTIONS_VERSION }}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
- name: Setup
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: ./.github/actions/sanitize/mpi
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Build
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.7
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{env.HYPRE_TGZ}}
|
||||
dir: ${{env.HYPRE_DIR}}
|
||||
|
||||
@@ -27,13 +27,13 @@ jobs:
|
||||
llvm_use_sanitizer: "Undefined"
|
||||
name: ${{matrix.sanitizer}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: lsan.supp
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
@@ -17,24 +17,20 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 4.0.3
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v5
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-${{env.MFEM_ACTIONS_VERSION}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
- name: Setup
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: ./.github/actions/sanitize/mpi
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Build
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.7
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{env.METIS_TGZ}}
|
||||
dir: ${{env.METIS_DIR}}
|
||||
|
||||
@@ -28,7 +28,7 @@ jobs:
|
||||
build:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/mfem
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
@@ -40,7 +40,7 @@ jobs:
|
||||
env:
|
||||
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -58,7 +58,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -82,7 +82,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -107,7 +107,7 @@ jobs:
|
||||
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
|
||||
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -131,7 +131,7 @@ jobs:
|
||||
env:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -146,7 +146,7 @@ jobs:
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build/tests/unit
|
||||
run: find . -type f -name '*.o' -delete
|
||||
- uses: actions/upload-artifact@v7
|
||||
- uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
@@ -165,14 +165,14 @@ jobs:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
np: ${{inputs.par && '_np=2' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
- uses: actions/download-artifact@v8
|
||||
- uses: actions/download-artifact@v4
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
with:
|
||||
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
|
||||
@@ -17,17 +17,7 @@ permissions:
|
||||
on:
|
||||
push:
|
||||
branches: ["master", "next"]
|
||||
paths-ignore: &docs-only-paths
|
||||
- "**/*.md"
|
||||
- "doc/**"
|
||||
- ".binder/**"
|
||||
- "CITATION.cff"
|
||||
- "LICENSE"
|
||||
- "NOTICE"
|
||||
- "CHANGELOG"
|
||||
- "INSTALL"
|
||||
pull_request:
|
||||
paths-ignore: *docs-only-paths
|
||||
workflow_dispatch:
|
||||
|
||||
concurrency:
|
||||
|
||||
@@ -260,7 +260,6 @@ miniapps/meshing/polar-nc
|
||||
miniapps/meshing/mesh-quality
|
||||
miniapps/meshing/hpref
|
||||
miniapps/meshing/phpref
|
||||
miniapps/meshing/pref321
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
@@ -444,10 +443,6 @@ miniapps/diag-smoothers/mg-abs-l1-jacobi
|
||||
miniapps/contact/contact
|
||||
miniapps/contact/ParaView
|
||||
|
||||
miniapps/plasma/pic/electrostatic-*
|
||||
!miniapps/plasma/pic/electrostatic-*.cpp
|
||||
miniapps/plasma/pic/*.csv
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -102,14 +102,12 @@ report_baseline:
|
||||
mkdir -p ${MACHINE_NAME}
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
status=0
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir} || { status=1; }
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ $status -ne 0 ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${MACHINE_NAME}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
|
||||
@@ -85,8 +85,3 @@ opt_par_gcc_10_pumi:
|
||||
extends: .mfem_job_on_dane
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
|
||||
opt_par_gcc_10_gslib:
|
||||
extends: .mfem_job_on_dane
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +gslib"
|
||||
|
||||
@@ -63,8 +63,3 @@ opt_mpi_cuda_hypre_cuda_gcc:
|
||||
extends: .mfem_job_on_matrix
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90 ^hypre+cuda"
|
||||
|
||||
opt_mpi_cuda_gcc_gslib:
|
||||
extends: .mfem_job_on_matrix
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +mpi +cuda +gslib cuda_arch=90 ^hypre+cuda"
|
||||
|
||||
@@ -32,9 +32,9 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "dane" ]]; then
|
||||
srun --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
salloc --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
srun --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
|
||||
@@ -11,160 +11,21 @@
|
||||
Version 4.9.1 (development)
|
||||
===========================
|
||||
|
||||
- Added policy for AI-assisted contribution to CONTRIBUTING.md.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Improved FindPointsGSLIB surface mesh capability with support for simplices
|
||||
and an option to specify axis-aligned bounding box padding for near-surface
|
||||
point queries.
|
||||
|
||||
- Added GPU-enabled partial assembly for simplicial Bernstein H1 basis based on
|
||||
ragged tensor algorithms (see DOI: 10.1137/11082539X) for mass and diffusion
|
||||
integrators.
|
||||
|
||||
- Replaced legacy simplex quadrature rules with symmetric positive weight rules
|
||||
for triangles (orders 0-25) and tetrahedra (orders 0-20). These rules
|
||||
guarantee all-positive weights and interior quadrature points, improving
|
||||
numerical stability. Higher orders fall back to Grundmann-Moller.
|
||||
* Triangle rules: Witherden and Vincent, DOI: 10.1016/j.camwa.2015.03.017
|
||||
* Tet rules (d=1-13): Witherden and Vincent (same as above)
|
||||
* Tet rules (d=14-20): Chuluunbaatar et al., DOI: 10.1016/j.camwa.2022.08.016
|
||||
|
||||
- Added support for general 1D Gauss-Jacobi quadrature rules and Stroud conical
|
||||
quadrature rules on triangles and tetrahedra.
|
||||
|
||||
- Improved the GridFunction projection routines. Projections work for Scalar,
|
||||
- Improved the gridfunction projection routines. Projections work for Scalar,
|
||||
Vector and VectorFE, also NURBS versions. Optionally different types of
|
||||
projections can be selected, default behavior has not changed.
|
||||
|
||||
- Added GridFunction projection methods for trace spaces, i.e., project
|
||||
coefficients on the mesh skeleton.
|
||||
|
||||
- Added methods to estimate function extremum using piecewise linear bounds plus
|
||||
recursive subdivision.
|
||||
|
||||
- Extend FindPointsGSLIB to support surface meshes.
|
||||
|
||||
- Added support for complex-valued mixed bilinear forms via the new classes
|
||||
MixedSesquilinearForm and ParMixedSesquilinearForm, mirroring the existing
|
||||
SesquilinearForm classes. Rectangular complex operators are now also
|
||||
handled correctly by ComplexSparseMatrix::GetSystemMatrix and
|
||||
ComplexHypreParMatrix::GetSystemMatrix, which previously assumed equal
|
||||
trial and test spaces.
|
||||
|
||||
- Added FiniteElementSpace::GetBoundaryLoopEdgeDofs to extract the edge DOFs on
|
||||
the perimeter loop of a set of boundary elements, with a ParFiniteElementSpace
|
||||
overload that reconciles the selection across processor boundaries so the
|
||||
result is partition invariant. This is useful for imposing boundary conditions
|
||||
on boundary edge DOFs.
|
||||
|
||||
- Added a MaxAbs reduction to GroupCommunicator that selects the signed value of
|
||||
largest magnitude across a group, keeping its sign. Equal-magnitude ties
|
||||
resolve deterministically to the positive value.
|
||||
projections can be selected, default behaviour has not changed.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added support for nonuniform anisotropic mesh refinement on parallel quad/hex
|
||||
meshes with arbitrary spacing in each direction. This enables in particular
|
||||
3:1 refinement in parallel, as demonstrated in the new meshing miniapp pref321.
|
||||
|
||||
- Added option to guarantee mesh validity during TMOP-based r-adaptivity, using
|
||||
bounds on the determinant of the mesh transformation Jacobian.
|
||||
|
||||
- Added PA support for TMOP's adaptive limiting functionality. Multiple
|
||||
GridFunctions and Coefficients can be combined to form a composite term.
|
||||
|
||||
- Improved support for 1D NURBS meshes with variable order, including using
|
||||
the patches construct for 1D NURBS meshes.
|
||||
|
||||
- Added the option to include material interfaces (faces separating elements
|
||||
with different element attributes) as additional boundary elements, for
|
||||
parallel visualization, e.g. with GLVis. This is supported by both the Print
|
||||
and PrintAsOne methods of ParMesh. See ParMesh::SetPrintInterfaces().
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Added support for trace spaces in PRefinementTransferOperator. This is used in
|
||||
PRefinement multigrid methods for problems posed on trace spaces (see e.g. the
|
||||
DPG miniapps).
|
||||
|
||||
- Added new class MultiVector: an array of Vectors of different sizes where each
|
||||
Vector can be allocated independently. Also, added associated methods in class
|
||||
Operator: MultMV, MultTransposeMV, and GetGradientMV, that use MultiVector
|
||||
objects for input and/or output parameters. [PR #5249]
|
||||
|
||||
GPU computing
|
||||
-------------
|
||||
- Improved partial assembly for VectorDivergenceIntegrator with shared-memory
|
||||
kernels, kernel registration, and transpose support.
|
||||
|
||||
- Improved partial-assembly diagonal kernels for VectorMassIntegrator (shared-
|
||||
memory specializations) and ElasticityIntegrator (no scratch Q-vector).
|
||||
|
||||
- Added PA gradient and diagonal support for VectorConvectionNLFIntegrator
|
||||
(AssembleGradPA, AddMultGradPA, AssembleGradDiagonalPA).
|
||||
|
||||
- Added device assembly support for 3D H(curl) VectorFEDomainLFIntegrator.
|
||||
|
||||
- Added partial assembly support for MixedScalarWeakGradientIntegrator.
|
||||
|
||||
- Added partial assembly support for MixedDotProductIntegrator.
|
||||
|
||||
- Added partial assembly support for MixedScalarCrossProductIntegrator.
|
||||
|
||||
- Added partial assembly support for MixedScalarWeakCrossProductIntegrator.
|
||||
|
||||
- Added partial assembly support for MixedVectorGradientIntegrator for H1->RT.
|
||||
|
||||
- Added support for device partial assembly CurlInterpolator.
|
||||
This supports 2D and 3D variants:
|
||||
2D H1 (out-of-plane) to RT (in-plane)
|
||||
2D ND (in-plane) to Integral L2 (out-of-plane)
|
||||
3D ND to RT
|
||||
|
||||
- Added NVIDIA cuDSS library interface. Implementation examples have been
|
||||
added to ex1 and ex1p. See https://developer.nvidia.com/cudss for more
|
||||
details. Supported versions >= 0.6.0.
|
||||
|
||||
- Allow specifying GPU kernel launch bounds for native and RAJA GPU backends.
|
||||
|
||||
- Changed VectorFEMassIntegrator to use kernel specialization dispatch for
|
||||
partial assembly.
|
||||
|
||||
- Added support for FiniteElement::MapType::INTEGRAL spaces to
|
||||
QuadratureInterpolator.
|
||||
|
||||
- Added support for FiniteElement::MapType::INTEGRAL spaces to
|
||||
MixedScalarCurlIntegrator.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- The Lorentz miniapp (in miniapps/electromagnetics) has been updated to
|
||||
leverage the ParticleSet capability.
|
||||
|
||||
- Added (Complex)PRefinementMultigrid solver option in the DPG miniapps.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Fixed signed DOF handling in ParGridFunction reading (read constructor) and
|
||||
saving via SaveAsOne(). Simplified the process of applying the DOF signs by
|
||||
using the new method ApplyDofSigns() in class ParFiniteElementSpace: the
|
||||
method will return immediately if no sign flips are needed.
|
||||
|
||||
- Added support for coefficient-weighted LOR transfer in
|
||||
L2ProjectionGridTransfer. The transfer conserves the weighted mass, for
|
||||
example when transferring velocity while conserving density-weighted momentum.
|
||||
This is illustrated in the lor-transfer and plor-transfer miniapps.
|
||||
|
||||
- Added support for saving DataCollection output on the node-local storage,
|
||||
instead of requiring that the filesystem is shared among all the ranks.
|
||||
|
||||
API changes
|
||||
-----------
|
||||
- Removed ProjectGrad from 2D RT elements. Users should use ProjectCurl instead.
|
||||
This also fixes a bug where ProjectCurl was returning the negative curl,
|
||||
identical to ProjectGrad.
|
||||
- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
|
||||
capability.
|
||||
|
||||
|
||||
Version 4.9, released on Dec 11, 2025
|
||||
|
||||
+14
-25
@@ -88,9 +88,18 @@ if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
# RAJA requires C++20:
|
||||
if ((MFEM_USE_UMPIRE OR MFEM_USE_RAJA) AND ("${CMAKE_CXX_STANDARD}" LESS "20"))
|
||||
set(CMAKE_CXX_STANDARD 20 CACHE STRING "C++ standard to use." FORCE)
|
||||
# Ginkgo requires C++17:
|
||||
if ((MFEM_USE_GINKGO) AND ("${CMAKE_CXX_STANDARD}" LESS "17"))
|
||||
set(CMAKE_CXX_STANDARD 17 CACHE STRING "C++ standard to use." FORCE)
|
||||
# Google Benchmark, SUNDIALS, STRUMPACK, Tribol, RAJA and Umpire require C++14:
|
||||
elseif ((MFEM_USE_BENCHMARK OR
|
||||
MFEM_USE_SUNDIALS OR
|
||||
MFEM_USE_STRUMPACK OR
|
||||
MFEM_USE_TRIBOL OR
|
||||
MFEM_USE_RAJA OR
|
||||
MFEM_USE_UMPIRE) AND
|
||||
("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
set(CMAKE_CXX_STANDARD 14 CACHE STRING "C++ standard to use." FORCE)
|
||||
endif()
|
||||
|
||||
# Include xSDK default CMake file.
|
||||
@@ -230,13 +239,6 @@ else()
|
||||
set(MFEM_DEBUG OFF)
|
||||
endif()
|
||||
|
||||
# Shadow warnings for clang only; GCC's -Wshadow flags more.
|
||||
if (CMAKE_CXX_COMPILER_ID MATCHES "Clang")
|
||||
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pedantic -Wall -Wshadow")
|
||||
elseif (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
|
||||
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pedantic -Wall")
|
||||
endif()
|
||||
|
||||
# Shared build on Windows
|
||||
if (WIN32 AND BUILD_SHARED_LIBS)
|
||||
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
|
||||
@@ -431,15 +433,6 @@ if (MFEM_USE_STRUMPACK)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# cuDSS can only be enabled in CUDA
|
||||
if (MFEM_USE_CUDSS)
|
||||
if (MFEM_USE_CUDA)
|
||||
find_package(CUDSS REQUIRED)
|
||||
else()
|
||||
message(FATAL_ERROR " *** cuDSS requires that CUDA be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# GnuTLS
|
||||
if (MFEM_USE_GNUTLS)
|
||||
find_package(_GnuTLS REQUIRED)
|
||||
@@ -638,7 +631,7 @@ find_package(Threads REQUIRED)
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB HDF5
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CUDSS CALIPER CODIPACK
|
||||
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CALIPER CODIPACK
|
||||
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
|
||||
ALGOIM ENZYME CUDA::cudart)
|
||||
|
||||
@@ -659,8 +652,6 @@ foreach(TPL IN LISTS MFEM_TPLS)
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
|
||||
# reverse to remove the first instance of entries in TPL_LIBRARIES
|
||||
# so later duplicates are kept (for dependency ordering)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_LIBRARIES)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
@@ -1024,7 +1015,5 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
|
||||
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
|
||||
# define install rules for 'config.mk' and 'test.mk'
|
||||
#-------------------------------------------------------------------------------
|
||||
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
|
||||
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
|
||||
endif()
|
||||
|
||||
mfem_export_mk_files()
|
||||
|
||||
+65
-72
@@ -3,12 +3,12 @@
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-blue.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/releases/latest"><img alt="GitHub release" src="https://img.shields.io/github/v/release/mfem/mfem"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions/workflows/repo-check.yml?query=branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml?query=branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
|
||||
<a href="https://docs.mfem.org/html/index.html"><img alt="Documentation" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
</p>
|
||||
|
||||
|
||||
@@ -24,14 +24,6 @@ must be made under this license.
|
||||
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
|
||||
in the MFEM community, you agree to abide by its rules.
|
||||
|
||||
## AI Policy
|
||||
- Use of AI code generation in MFEM is allowed but must be disclosed, e.g. by
|
||||
selecting the `AI-assisted` label on the PR.
|
||||
- By submitting a PR, the author acknowledges that they have reviewed and
|
||||
understand the changes they are proposing.
|
||||
- PR authors are still responsible for correctness, licensing, and attribution
|
||||
of all changes.
|
||||
|
||||
If you plan on contributing to MFEM, consider reviewing the
|
||||
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
|
||||
already exists for your desired feature or the bug you ran into. Use a pull
|
||||
@@ -84,7 +76,7 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
follow the [MFEM PR Rules](#mfem-pr-rules).
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
- PRs are treated similarly to journal submission, with an "editor" assigning two
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning two
|
||||
reviewers to evaluate the changes.
|
||||
- The reviewers have 3 weeks to evaluate the PR and work with the author to
|
||||
fix issues and implement improvements.
|
||||
@@ -125,7 +117,7 @@ The MFEM source code has the following structure:
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
│ └── superlu
|
||||
| └── superlu
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── dfem
|
||||
@@ -137,6 +129,10 @@ The MFEM source code has the following structure:
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
│ └── tmop
|
||||
│ | ├── assemble
|
||||
│ | ├── metrics
|
||||
│ | ├── mult
|
||||
│ | └── tools
|
||||
├── general
|
||||
├── linalg
|
||||
│ ├── batched
|
||||
@@ -149,10 +145,11 @@ The MFEM source code has the following structure:
|
||||
│ ├── common
|
||||
│ ├── contact
|
||||
│ ├── dfem
|
||||
│ ├── diag-smoothers
|
||||
│ ├── dpg
|
||||
│ ├── electromagnetics
|
||||
│ ├── fluids
|
||||
│ │ ├── navier
|
||||
│ │ └── schrodinger-flow
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
@@ -162,7 +159,6 @@ The MFEM source code has the following structure:
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
│ ├── performance
|
||||
│ ├── plasma
|
||||
│ ├── shifted
|
||||
│ ├── solvers
|
||||
│ ├── spde
|
||||
@@ -193,15 +189,15 @@ respectively.
|
||||
|
||||
- The main finite element classes are:
|
||||
+ [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElementCollection.html)
|
||||
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
|
||||
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
|
||||
|
||||
- The main linear algebra classes and sources are
|
||||
+ [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1Vector.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
|
||||
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
|
||||
|
||||
@@ -213,8 +209,8 @@ shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
|
||||
- The main parallel classes are
|
||||
+ [`ParMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParNCMesh.html)
|
||||
+ [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
|
||||
@@ -224,14 +220,14 @@ have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
#### GPU and general device support
|
||||
|
||||
GPU and multi-core CPU support is based on device kernels supporting different
|
||||
backends (CUDA, HIP, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html), [`hip.hpp`](https://docs.mfem.org/html/hip_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
- The `general/` directory contains C++ classes that serve as utilities for
|
||||
@@ -245,8 +241,8 @@ device/host memory manager.
|
||||
- `examples` and `miniapps` respectively gather simple and more fully-featured
|
||||
demonstrations of the usage on MFEM. They both rely on `data/` for the
|
||||
collection of meshes.
|
||||
- The `tests/` directory contains a unit test suite, additional tests, and
|
||||
benchmarks.
|
||||
- The `tests/` directory contains a unit test suite and will later contain more
|
||||
tests that run example codes.
|
||||
|
||||
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
|
||||
website.
|
||||
@@ -280,8 +276,8 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
the top of https://github.com/mfem.
|
||||
- Consider making your membership public by going to https://github.com/orgs/mfem/people
|
||||
and clicking on the organization visibility drop box next to your name.
|
||||
- Project discussions and announcements will be posted at https://github.com/orgs/mfem/discussions,
|
||||
tagging the `@mfem/everyone` team when appropriate.
|
||||
- Project discussions and announcements will be posted at
|
||||
https://github.com/orgs/mfem/teams/everyone.
|
||||
|
||||
#### Structure
|
||||
- The MFEM source code is in the [mfem](https://github.com/mfem/mfem)
|
||||
@@ -341,12 +337,11 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- Well-designed simple code is frequently more general and powerful.
|
||||
- Lean code base is easier to understand by new collaborators.
|
||||
- New features should be added only if they are necessary or generally useful.
|
||||
- Introduction of language constructs not currently used in MFEM should be
|
||||
- Introduction of language constructions not currently used in MFEM should be
|
||||
justified and generally avoided (to maintain portability to various systems
|
||||
and compilers, including early access hardware).
|
||||
- We prefer basic C++. Use C++17 features judiciously, prioritizing readability,
|
||||
consistency with existing MFEM code, and portability to different systems,
|
||||
compilers and device backends.
|
||||
- We prefer basic C++ and the C++03 standard, to keep the code readable by
|
||||
a large audience and to make sure it compiles anywhere.
|
||||
|
||||
- *Keep the code general and reasonably efficient*
|
||||
- The main goal is fast prototyping for research and application development.
|
||||
@@ -389,7 +384,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- When your branch is ready for other developers to review / comment on
|
||||
the code, create a pull request towards `mfem:master`.
|
||||
|
||||
- Pull requests typically have titles like:
|
||||
- Pull request typically have titles like:
|
||||
|
||||
`Description [new-feature-dev]`
|
||||
|
||||
@@ -410,12 +405,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- Add a description, appropriate labels and assign yourself to the PR. The MFEM
|
||||
team will add reviewers as appropriate.
|
||||
|
||||
- List outstanding TODO items in the description.
|
||||
- List outstanding TODO items in the description, see PR #222 for an example.
|
||||
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
or request the `ready-for-review` label.
|
||||
the `ready-for-review` label.
|
||||
|
||||
- PRs are treated similarly to journal submission, with an "editor" assigning
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning
|
||||
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
|
||||
the PR and work with the author to implement improvements and fix issues.
|
||||
|
||||
@@ -441,7 +436,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
checks in GitHub Actions enforce MFEM-specific rules which are explained in
|
||||
the error messages and the `tests/scripts` directory.
|
||||
|
||||
- Also note that the tests `branch-history` and `repo-check` found in GitHub
|
||||
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
|
||||
Actions can be triggered automatically before each push using git hooks. See
|
||||
the [git hooks README](config/githooks/README.md) for a detailed explanation.
|
||||
|
||||
@@ -498,15 +493,15 @@ Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their a
|
||||
|
||||
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
|
||||
|
||||
4. To seek help from the editors in case of difficulties.
|
||||
3. To seek help from the editors in case of difficulties.
|
||||
|
||||
5. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
4. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
|
||||
6. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
7. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
|
||||
8. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
|
||||
#### Responsibilities of Authors
|
||||
|
||||
@@ -532,30 +527,30 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Code builds.
|
||||
- [ ] Code passes `make style`.
|
||||
- [ ] Update `CHANGELOG`:
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Update `INSTALL`:
|
||||
- [ ] Has a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
|
||||
- [ ] Have the version ranges for any required or optional libraries changed?
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
|
||||
- [ ] Have the version ranges for any required or optional libraries changed?
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update `.gitignore`:
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
- [ ] New examples:
|
||||
- [ ] All sample runs at the top of the example source file work.
|
||||
- [ ] Update `examples/makefile`:
|
||||
- [ ] All sample runs at the top of the example source file work.
|
||||
- [ ] Update `examples/makefile`:
|
||||
- [ ] Add the example code to the appropriate `SEQ_EXAMPLES` and `PAR_EXAMPLES` variables.
|
||||
- [ ] Add any files generated by it to the `clean` target.
|
||||
- [ ] Add the example binary and any files generated by it to the top-level `.gitignore` file.
|
||||
- [ ] Update `examples/CMakeLists.txt`:
|
||||
- [ ] Update `examples/CMakeLists.txt`:
|
||||
- [ ] Add the example code to the `ALL_EXE_SRCS` variable.
|
||||
- [ ] Make sure `THIS_TEST_OPTIONS` is set correctly for the new example.
|
||||
- [ ] List the new example in `doc/CodeDocumentation.dox`.
|
||||
- [ ] If new examples directory (e.g. `examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] If new examples directory (e.g.`examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add example-specific documentation, see e.g. the `src/examples.md`.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
@@ -572,13 +567,13 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
|
||||
- [ ] Consider adding a new test for the new miniapp.
|
||||
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
|
||||
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New capability:
|
||||
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
|
||||
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
|
||||
@@ -680,7 +675,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] Update URL shortlinks:
|
||||
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Add the new shortlinks to the MFEM package in `spack`.
|
||||
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
|
||||
- [ ] Update website in `mfem/web` repo:
|
||||
- Update version and shortlinks in `src/index.md` and `src/download.md`.
|
||||
- Use [cloc-1.62.pl](http://cloc.sourceforge.net/) and `ls -lh` to estimate the SLOC and the tarball size in `src/download.md`.
|
||||
@@ -732,24 +727,22 @@ commit or push, see the [README](config/githooks/README.md) in the `config/githo
|
||||
directory.
|
||||
|
||||
|
||||
### GitHub Actions smoke tests
|
||||
|
||||
### Linux and Mac smoke tests
|
||||
We use GitHub Actions to drive the default tests on the `master` and `next`
|
||||
branches. See the `.github/workflows` files and the logs at
|
||||
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
|
||||
|
||||
GitHub Actions testing should be kept lightweight, as there is a time
|
||||
constraint on jobs. The current workflows cover Linux, macOS, and Windows
|
||||
configurations.
|
||||
Testing using GitHub Actions should be kept lightweight, as there is a time
|
||||
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
|
||||
|
||||
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
|
||||
- Tests on the `next` branch are currently scheduled to run each night.
|
||||
|
||||
### Additional Windows smoke test
|
||||
|
||||
We also use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor.yml` file
|
||||
and the build logs at
|
||||
### Windows smoke test
|
||||
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor` file and the
|
||||
build logs at
|
||||
[https://ci.appveyor.com/project/mfem/mfem](https://ci.appveyor.com/project/mfem/mfem).
|
||||
|
||||
CMake is used to generate the MSVC Project files and drive the build. A release
|
||||
|
||||
@@ -38,13 +38,14 @@ the option MFEM_USE_METIS.
|
||||
MFEM also includes support for devices such as GPUs, and programming models such
|
||||
as CUDA, HIP, OCCA, OpenMP and RAJA.
|
||||
|
||||
- Starting with version 4.9, MFEM requires a C++17 compiler.
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler. We recommend using
|
||||
a newer compiler, e.g. GCC version 4.9 or higher.
|
||||
|
||||
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- HIP support requires an AMD GPU and an installation of the ROCm software stack
|
||||
https://rocm.docs.amd.com
|
||||
https://rocmdocs.amd.com
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
@@ -82,9 +83,9 @@ Serial build:
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
make parallel -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
@@ -114,14 +115,14 @@ Serial build:
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
|
||||
make -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
Parallel build with fetching of hypre and METIS:
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
mkdir <mfem-buil-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DMFEM_FETCH_TPLS=YES
|
||||
make -j 4
|
||||
|
||||
@@ -133,8 +134,7 @@ CUDA build:
|
||||
|
||||
HIP build:
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 \
|
||||
-DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
|
||||
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 -DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
|
||||
make -j 4
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
@@ -269,7 +269,6 @@ Compilers:
|
||||
CXX - C++ compiler, serial build
|
||||
MPICXX - MPI C++ compiler, parallel build
|
||||
CUDA_CXX - The CUDA compiler, 'nvcc' or 'clang++'
|
||||
HIP_CXX - The HIP compiler, e.g. 'hipcc'
|
||||
|
||||
Compiler options:
|
||||
OPTIM_FLAGS - Options for optimized build
|
||||
@@ -396,11 +395,6 @@ MFEM_USE_STRUMPACK = YES/NO
|
||||
classes. When enabled, this option uses the STRUMPACK_* library options, see
|
||||
below.
|
||||
|
||||
MFEM_USE_CUDSS = YES/NO
|
||||
Enable MFEM functionality based on the cuDSS library. When using cuDSS, CUDA
|
||||
support must be also enabled in MFEM, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
When enabled, this option uses the CUDSS_* library options, see below.
|
||||
|
||||
MFEM_USE_GINKGO = YES/NO
|
||||
Enable MFEM functionality based on the Ginkgo library, which provides
|
||||
iterative linear solvers and preconditioners with OpenMP, CUDA backends, see
|
||||
@@ -560,13 +554,13 @@ MFEM_USE_RAJA = YES/NO
|
||||
MFEM_USE_OCCA = YES/NO
|
||||
Enables support for the OCCA library in MFEM. OCCA is an open-source library
|
||||
which aims to make it easy to program different types of devices (e.g. CPU,
|
||||
GPU, FPGA) by providing a unified API for interacting with JIT-compiled
|
||||
GPU, FPGA) by providing an unified API for interacting with JIT-compiled
|
||||
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
|
||||
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_USE_GSLIB = YES/NO
|
||||
Enables MFEM functionality based on the GSLIB library, and specifically its
|
||||
FindPoints component, which provides robust algorithms to evaluate finite
|
||||
FindPoints component, which provides a robust algorithms to evaluate finite
|
||||
element functions in a collection of points in physical space. When enabled,
|
||||
the user can use the GSLIB-FindPoints methods as shown in miniapps/gslib.
|
||||
|
||||
@@ -725,18 +719,9 @@ The specific libraries and their options are:
|
||||
Options: STRUMPACK_OPT, STRUMPACK_LIB.
|
||||
Versions: STRUMPACK >= 3.0.0.
|
||||
|
||||
- CUDSS (optional), used when MFEM_USE_CUDSS = YES. Note that CUDSS requires
|
||||
CUDA 12.x toolkit and the cuDSS libraries. The supported communication backend
|
||||
is OpenMPI 4.x (default), and OpenMPI 4.x or a later version must be pre-built.
|
||||
The source files in the cuDSS tarball provide guidance for developing custom
|
||||
MPI implementations.
|
||||
URL: https://developer.nvidia.com/cudss
|
||||
https://docs.nvidia.com/cuda/cudss/advanced_features.html#communication-layer-library-in-cudss
|
||||
Options: CUDSS_OPT, CUDSS_LIB.
|
||||
Versions: cuDSS >= 0.6.0.
|
||||
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Ginkgo may have additional
|
||||
requirements and module-specific dependencies; see the webpage below.
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
|
||||
C++ compiler that supports the C++-17 standard. For additional requirements
|
||||
and dependencies of specific modules, see the Ginkgo webpage below.
|
||||
URL: https://ginkgo-project.github.io
|
||||
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
|
||||
Debug).
|
||||
@@ -808,7 +793,7 @@ The specific libraries and their options are:
|
||||
Options: CONDUIT_OPT, CONDUIT_LIB.
|
||||
Versions: Conduit >= 0.3.1.
|
||||
|
||||
- ADIOS2 (optional), used when MFEM_USE_ADIOS2 = YES.
|
||||
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
|
||||
URL: https://adios2.readthedocs.io/
|
||||
Versions: ADIOS >= 2.5.0.
|
||||
|
||||
@@ -884,7 +869,7 @@ The specific libraries and their options are:
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 2022.10.3.
|
||||
|
||||
- Moonolith (optional), used when MFEM_USE_MOONOLITH = YES.
|
||||
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
|
||||
URL: https://bitbucket.org/zulianp/par_moonolith
|
||||
Options: MOONOLITH_DIR
|
||||
Versions: MOONOLITH >= 1.1.0.
|
||||
@@ -972,7 +957,7 @@ CMAKE_BUILD_TYPE which can be set to standard values like "Debug", and "Release"
|
||||
To use a specific generator use the "-G <generator>" option of cmake:
|
||||
|
||||
cmake <mfem-source-dir> -G "Xcode"
|
||||
cmake <mfem-source-dir> -G "Visual Studio 17 2022"
|
||||
cmake <mfem-source-dir> -G "Visual Studio 12 2013"
|
||||
cmake <mfem-source-dir> -G "MinGW Makefiles"
|
||||
|
||||
With CMake it is possible to build MFEM as a shared library using the standard
|
||||
@@ -1217,7 +1202,7 @@ larger problems, there are two options:
|
||||
Specific options for HIP
|
||||
========================
|
||||
MFEM expects the `ROCM_PATH` environment variable to be set to the path of the
|
||||
ROCm install, as well as having `$ROCM_PATH/bin` in `PATH`.
|
||||
ROCM install, as well as having `$ROCM_PATH/bin` in `PATH`.
|
||||
|
||||
Specific options for RAJA+HIP+MPI
|
||||
=================================
|
||||
|
||||
@@ -28,7 +28,6 @@ license files. These software products and their licenses are as follows:
|
||||
* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
|
||||
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
|
||||
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
|
||||
* gslib (fem/gslib.{cpp,hpp}, mesh/bb_grid_map.{cpp,hpp}) -- BSD 3-clause license
|
||||
* Picojson (fem/picojson.h) -- Custom 2-clause license
|
||||
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
|
||||
* Zstr (general/zstr.hpp) -- MIT license
|
||||
|
||||
@@ -35,7 +35,6 @@ set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
|
||||
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
|
||||
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
|
||||
set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
|
||||
set(MFEM_USE_CUDSS @MFEM_USE_CUDSS@)
|
||||
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
|
||||
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
|
||||
set(MFEM_USE_MAGMA @MFEM_USE_MAGMA@)
|
||||
@@ -110,14 +109,6 @@ if (MFEM_USE_RAJA)
|
||||
find_dependency(RAJA)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CUDSS)
|
||||
find_dependency(cudss)
|
||||
endif (MFEM_USE_CUDSS)
|
||||
|
||||
if (MFEM_USE_UMPIRE)
|
||||
find_dependency(umpire)
|
||||
endif()
|
||||
|
||||
if (NOT TARGET mfem)
|
||||
include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
|
||||
endif (NOT TARGET mfem)
|
||||
|
||||
@@ -108,15 +108,6 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM functionality based on the cuDSS library.
|
||||
#cmakedefine MFEM_USE_CUDSS
|
||||
|
||||
// CUDSS communication layer library path
|
||||
#cmakedefine MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
|
||||
|
||||
// CUDSS threading layer library path
|
||||
#cmakedefine MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
|
||||
@@ -1,68 +0,0 @@
|
||||
if (NOT cudss_DIR AND CUDSS_DIR)
|
||||
set(cudss_DIR ${CUDSS_DIR}/lib/cmake/cudss)
|
||||
endif()
|
||||
message(STATUS "Looking for CUDSS ...")
|
||||
message(STATUS " in CUDSS_DIR = ${CUDSS_DIR}")
|
||||
message(STATUS " cudss_DIR = ${cudss_DIR}")
|
||||
find_package(cudss)
|
||||
set(CUDSS_FOUND ${cudss_FOUND})
|
||||
set(CUDSS_LIBRARIES "cudss")
|
||||
if (CUDSS_FOUND)
|
||||
message(STATUS
|
||||
"Found CUDSS target: ${CUDSS_LIBRARIES} (version: ${cudss_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (CUDSS_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
endif()
|
||||
message(${msg}
|
||||
"CUDSS not found. Please set CUDSS_DIR to the install prefix.")
|
||||
endif()
|
||||
|
||||
if(CUDSS_FOUND AND TARGET cudss)
|
||||
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION)
|
||||
if(NOT CUDSS_LIBRARY_LOCATION)
|
||||
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION_RELEASE)
|
||||
endif()
|
||||
if(CUDSS_LIBRARY_LOCATION)
|
||||
get_filename_component(CUDSS_LIBRARY_DIR "${CUDSS_LIBRARY_LOCATION}" DIRECTORY)
|
||||
else()
|
||||
message(WARNING "Could not determine the location of the cuDSS library.")
|
||||
endif()
|
||||
else()
|
||||
message(WARNING "cuDSS target not available; cannot determine library directory.")
|
||||
endif()
|
||||
|
||||
# Set the full name of the cuDSS threading library if OpenMP is enabled.
|
||||
# The threading layer library (libcudss_mtlayer_gomp.so) is located under the
|
||||
# cuDSS library directory by default.
|
||||
if (MFEM_USE_OPENMP)
|
||||
find_file(
|
||||
CUDSS_THREADING_LIB
|
||||
NAMES libcudss_mtlayer_gomp.so
|
||||
PATHS ${CUDSS_LIBRARY_DIR}
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if (NOT DEFINED MFEM_CUDSS_THREADING_LIB AND CUDSS_THREADING_LIB)
|
||||
set(MFEM_CUDSS_THREADING_LIB "${CUDSS_THREADING_LIB}")
|
||||
endif()
|
||||
message(STATUS "CUDSS threading layer library: ${MFEM_CUDSS_THREADING_LIB}")
|
||||
endif()
|
||||
|
||||
# Set the full name of the cuDSS communication library if MFEM use OpenMPI.
|
||||
# The communication layer library (libcudss_commlayer_mpi.so) is located under the
|
||||
# cuDSS library directory by default.
|
||||
# The communication layer library is used pre-built communication layers for OpenMPI
|
||||
# by default.
|
||||
if (MFEM_USE_MPI)
|
||||
find_file(
|
||||
CUDSS_COMM_LIB
|
||||
NAMES libcudss_commlayer_openmpi.so
|
||||
PATHS ${CUDSS_LIBRARY_DIR}
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if (NOT DEFINED MFEM_CUDSS_COMM_LIB AND CUDSS_COMM_LIB)
|
||||
set(MFEM_CUDSS_COMM_LIB "${CUDSS_COMM_LIB}")
|
||||
endif()
|
||||
message(STATUS "CUDSS communication layer library: ${MFEM_CUDSS_COMM_LIB}")
|
||||
endif()
|
||||
@@ -18,17 +18,19 @@
|
||||
|
||||
if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
|
||||
enable_language(C)
|
||||
set(GSLIB_FETCH_VERSION 1.0.9)
|
||||
add_library(GSLIB STATIC IMPORTED)
|
||||
# set options (technically flags because GSLIB does not use cmake)
|
||||
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
|
||||
set(GSLIB_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
|
||||
if (BUILD_SHARED_LIBS)
|
||||
set(GSLIB_FLAGS "${GSLIB_FLAGS} -fPIC")
|
||||
set(GSLIB_FETCH_VERSION 1.0.9)
|
||||
set(GSLIB_C_FLAGS ${CMAKE_C_FLAGS_${BUILD_TYPE}})
|
||||
if (CMAKE_C_FLAGS)
|
||||
set(GSLIB_C_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
|
||||
endif()
|
||||
if (BUILD_SHARED_LIBS)
|
||||
set(GSLIB_C_FLAGS "${GSLIB_C_FLAGS} -fPIC")
|
||||
endif()
|
||||
add_library(GSLIB STATIC IMPORTED)
|
||||
# define external project and create future include directory so it is present
|
||||
# to pass CMake checks at end of MFEM configuration step
|
||||
message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_FLAGS}")
|
||||
message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_C_FLAGS}")
|
||||
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/gslib)
|
||||
include(ExternalProject)
|
||||
ExternalProject_Add(gslib
|
||||
@@ -38,7 +40,7 @@ if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
|
||||
UPDATE_DISCONNECTED TRUE
|
||||
PREFIX ${PREFIX}
|
||||
CONFIGURE_COMMAND ""
|
||||
BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS=${GSLIB_FLAGS}"
|
||||
BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS= ${GSLIB_C_FLAGS}"
|
||||
INSTALL_COMMAND "")
|
||||
file(MAKE_DIRECTORY ${PREFIX}/include)
|
||||
# set imported library target properties
|
||||
|
||||
@@ -44,9 +44,6 @@ if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
|
||||
# set options and associated dependencies
|
||||
set(HYPRE_CMAKE_OPTIONS "")
|
||||
list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
|
||||
if (BUILD_SHARED_LIBS)
|
||||
list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON)
|
||||
endif()
|
||||
# collect all HYPRE_ENABLE variables and pass them to hypre, assuming they are BOOL.
|
||||
get_cmake_property(all_vars VARIABLES)
|
||||
foreach(var ${all_vars})
|
||||
@@ -98,6 +95,7 @@ if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
|
||||
UPDATE_DISCONNECTED TRUE
|
||||
SOURCE_SUBDIR src
|
||||
PREFIX ${HYPRE_INSTALL}
|
||||
BUILD_COMMAND ${CMAKE_COMMAND} --build . -- -j${CMAKE_BUILD_PARALLEL_LEVEL}
|
||||
CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${HYPRE_INSTALL} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${HYPRE_CMAKE_OPTIONS})
|
||||
file(MAKE_DIRECTORY ${HYPRE_INSTALL}/include)
|
||||
# set imported library target properties
|
||||
|
||||
@@ -19,18 +19,10 @@
|
||||
# - METIS_VERSION_5 (cache variable)
|
||||
|
||||
if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
|
||||
enable_language(C)
|
||||
set(METIS_FETCH_VERSION 4.0.3)
|
||||
add_library(METIS STATIC IMPORTED)
|
||||
# set options (technically flags because METIS does not use cmake)
|
||||
set(METIS_FLAGS "-Wno-implicit-int -Wno-incompatible-pointer-types")
|
||||
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
|
||||
set(METIS_FLAGS "${METIS_FLAGS} ${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
|
||||
if (BUILD_SHARED_LIBS)
|
||||
set(METIS_FLAGS "${METIS_FLAGS} -fPIC")
|
||||
endif()
|
||||
# define external project
|
||||
message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with ${METIS_FLAGS}")
|
||||
message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with default options")
|
||||
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/metis)
|
||||
include(ExternalProject)
|
||||
ExternalProject_Add(metis
|
||||
@@ -40,7 +32,7 @@ if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
|
||||
UPDATE_DISCONNECTED TRUE
|
||||
PREFIX ${PREFIX}
|
||||
CONFIGURE_COMMAND tar -xzf ../metis/metis-${METIS_FETCH_VERSION}-mac.tgz --strip=1
|
||||
BUILD_COMMAND $(MAKE) clean && $(MAKE) "OPTFLAGS=${METIS_FLAGS}"
|
||||
BUILD_COMMAND $(MAKE) COPTIONS=-Wno-incompatible-pointer-types
|
||||
INSTALL_COMMAND mkdir -p ${PREFIX}/lib && cp libmetis.a ${PREFIX}/lib/)
|
||||
# set imported library target properties
|
||||
add_dependencies(METIS metis)
|
||||
|
||||
@@ -22,15 +22,15 @@ include(MfemCmakeUtilities)
|
||||
mfem_find_package(SuiteSparse SuiteSparse SuiteSparse_DIR "" "" "" ""
|
||||
"Paths to headers required by SuiteSparse."
|
||||
"Libraries required by SuiteSparse."
|
||||
ADD_COMPONENT "UMFPACK" "include;include/suitesparse;suitesparse" umfpack.h "lib" umfpack
|
||||
ADD_COMPONENT "KLU" "include;include/suitesparse;suitesparse" klu.h "lib" klu
|
||||
ADD_COMPONENT "AMD" "include;include/suitesparse;suitesparse" amd.h "lib" amd
|
||||
ADD_COMPONENT "BTF" "include;include/suitesparse;suitesparse" btf.h "lib" btf
|
||||
ADD_COMPONENT "CHOLMOD" "include;include/suitesparse;suitesparse" cholmod.h "lib" cholmod
|
||||
ADD_COMPONENT "COLAMD" "include;include/suitesparse;suitesparse" colamd.h "lib" colamd
|
||||
ADD_COMPONENT "CAMD" "include;include/suitesparse;suitesparse" camd.h "lib" camd
|
||||
ADD_COMPONENT "CCOLAMD" "include;include/suitesparse;suitesparse" ccolamd.h "lib" ccolamd
|
||||
ADD_COMPONENT "config" "include;include/suitesparse;suitesparse" SuiteSparse_config.h "lib"
|
||||
ADD_COMPONENT "UMFPACK" "include;suitesparse" umfpack.h "lib" umfpack
|
||||
ADD_COMPONENT "KLU" "include;suitesparse" klu.h "lib" klu
|
||||
ADD_COMPONENT "AMD" "include;suitesparse" amd.h "lib" amd
|
||||
ADD_COMPONENT "BTF" "include;suitesparse" btf.h "lib" btf
|
||||
ADD_COMPONENT "CHOLMOD" "include;suitesparse" cholmod.h "lib" cholmod
|
||||
ADD_COMPONENT "COLAMD" "include;suitesparse" colamd.h "lib" colamd
|
||||
ADD_COMPONENT "CAMD" "include;suitesparse" camd.h "lib" camd
|
||||
ADD_COMPONENT "CCOLAMD" "include;suitesparse" ccolamd.h "lib" ccolamd
|
||||
ADD_COMPONENT "config" "include;suitesparse" SuiteSparse_config.h "lib"
|
||||
suitesparseconfig)
|
||||
|
||||
if (SuiteSparse_FOUND AND METIS_VERSION_5)
|
||||
|
||||
@@ -14,12 +14,12 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_ROOT AND UMPIRE_DIR)
|
||||
set(umpire_ROOT ${UMPIRE_DIR})
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_ROOT = ${umpire_ROOT}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
find_package(umpire CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
|
||||
@@ -701,6 +701,7 @@ endfunction(mfem_find_library)
|
||||
# Extract compile and link options needed by the given target.
|
||||
#
|
||||
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
|
||||
if (NOT TARGET ${Target})
|
||||
return()
|
||||
endif()
|
||||
@@ -798,12 +799,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
if(NOT ("${Lib}" STREQUAL "dl"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
# for some reason libdl doesn't include the "-l"
|
||||
list(APPEND LinkOpts "-ldl")
|
||||
endif()
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
endif()
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
@@ -892,18 +888,9 @@ function(mfem_export_mk_files)
|
||||
set(${var} NO)
|
||||
endif()
|
||||
endforeach()
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
|
||||
if(MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
|
||||
else()
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
else()
|
||||
# mfem doesn't use enable_language(HIP)
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
# TODO: Add support for MFEM_USE_CUDA=YES
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${MFEM_CXX})
|
||||
set(MFEM_CPPFLAGS "")
|
||||
get_target_property(cxx_std mfem CXX_STANDARD)
|
||||
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
|
||||
@@ -913,50 +900,6 @@ function(mfem_export_mk_files)
|
||||
string(STRIP
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
if(MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
|
||||
# The following intentionally hides CUDA deprecation warnings
|
||||
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
|
||||
endforeach()
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
|
||||
else()
|
||||
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS
|
||||
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
# TODO: not supported
|
||||
else()
|
||||
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
elseif (MFEM_USE_HIP)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
|
||||
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
@@ -987,9 +930,6 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_SHARED NO)
|
||||
set(MFEM_STATIC YES)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
|
||||
endif()
|
||||
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
|
||||
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
|
||||
# For the next 4 variables, these are the values for the build-tree version of
|
||||
@@ -998,15 +938,8 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
|
||||
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_XLINKER "-Xlinker=")
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
# TODO: CUDA/HIP support:
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
set(MFEM_MPIEXEC ${MPIEXEC})
|
||||
if (NOT MFEM_MPIEXEC)
|
||||
set(MFEM_MPIEXEC "mpirun")
|
||||
@@ -1054,21 +987,16 @@ function(mfem_export_mk_files)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
|
||||
elseif (TARGET "${lib}")
|
||||
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
|
||||
# remove generator expressions
|
||||
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
|
||||
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
|
||||
mfem_get_target_options(${lib} CompileOpts LinkOpts)
|
||||
# Removing duplicates may lead to issues:
|
||||
# list(REMOVE_DUPLICATES CompileOpts)
|
||||
# list(REMOVE_DUPLICATES LinkOpts)
|
||||
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
|
||||
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
|
||||
foreach(LOpt IN LISTS LinkOpts)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
|
||||
endforeach()
|
||||
foreach(COpt IN LISTS CompileOpts)
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
|
||||
endforeach()
|
||||
string(REPLACE ";" " " COpts "${CompileOpts}")
|
||||
string(REPLACE ";" " " LOpts "${LinkOpts}")
|
||||
# message(STATUS "${lib}[COpts]: '${COpts}'")
|
||||
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
|
||||
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
@@ -1076,7 +1004,7 @@ function(mfem_export_mk_files)
|
||||
get_filename_component(fullLibName ${lib} NAME_WE)
|
||||
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
|
||||
set(MFEM_EXT_LIBS
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
else()
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
|
||||
endif()
|
||||
@@ -1085,7 +1013,7 @@ function(mfem_export_mk_files)
|
||||
# Create the build-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk")
|
||||
# Copy 'test.mk' from the source-tree to the build-tree
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/test.mk"
|
||||
@@ -1103,7 +1031,7 @@ function(mfem_export_mk_files)
|
||||
# Create the install-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk")
|
||||
|
||||
# Install rules for 'config.mk' and 'test.mk'
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
|
||||
|
||||
@@ -157,10 +157,4 @@ constexpr real_t operator""_r(unsigned long long v)
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
#ifndef MFEM_USE_CUDA
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
#error Building with cuDSS (MFEM_USE_CUDSS=YES) requires CUDA (MFEM_USE_CUDA=YES)
|
||||
#endif
|
||||
#endif // MFEM_USE_CUDSS not defined
|
||||
|
||||
#endif // MFEM_CONFIG_HPP
|
||||
|
||||
@@ -108,15 +108,6 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM functionality based on the cuDSS library.
|
||||
// #define MFEM_USE_CUDSS
|
||||
|
||||
// CUDSS communication layer library path
|
||||
// #define MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
|
||||
|
||||
// CUDSS threading layer library path
|
||||
// #define MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
|
||||
@@ -36,9 +36,6 @@ MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
|
||||
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
|
||||
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
|
||||
MFEM_USE_CUDSS = @MFEM_USE_CUDSS@
|
||||
MFEM_CUDSS_COMM_LIB = @MFEM_CUDSS_COMM_LIB@
|
||||
MFEM_CUDSS_THREADING_LIB = @MFEM_CUDSS_THREADING_LIB@
|
||||
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
|
||||
MFEM_USE_AMGX = @MFEM_USE_AMGX@
|
||||
MFEM_USE_MAGMA = @MFEM_USE_MAGMA@
|
||||
|
||||
@@ -38,7 +38,6 @@ option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
|
||||
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
|
||||
option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
|
||||
option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
|
||||
option(MFEM_USE_CUDSS "Enable cuDSS usage" OFF)
|
||||
option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
|
||||
option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
|
||||
option(MFEM_USE_MAGMA "Enable MAGMA usage" OFF)
|
||||
|
||||
+4
-49
@@ -27,10 +27,7 @@ MPICXX = mpicxx
|
||||
|
||||
BASE_FLAGS = -std=c++17
|
||||
OPTIM_FLAGS = -O3 $(BASE_FLAGS)
|
||||
|
||||
# The variable WARNING_FLAGS depends on which compiler is used, and is defined
|
||||
# later in this file.
|
||||
DEBUG_FLAGS = $(strip -g $(addprefix $(XCOMPILER),$(WARNING_FLAGS)) $(BASE_FLAGS))
|
||||
DEBUG_FLAGS = -g $(XCOMPILER)-Wall $(BASE_FLAGS)
|
||||
|
||||
# Prefixes for passing flags to the compiler and linker when using CXX or MPICXX
|
||||
CXX_XCOMPILER =
|
||||
@@ -49,10 +46,6 @@ SHARED = NO
|
||||
#
|
||||
# If you set MFEM_USE_ENZYME=YES, must use CUDA_CXX=clang++
|
||||
CUDA_CXX = nvcc
|
||||
# CUDA compute capability used during compilation, e.g. sm_60. Multiple
|
||||
# architectures can be requested as a comma-separated list, e.g. sm_70,sm_80.
|
||||
# A single value may also be one of the nvcc special values "all",
|
||||
# "all-major", or "native".
|
||||
CUDA_ARCH = sm_60
|
||||
# Base CUDA install directory, only needed if building with clang+cuda:
|
||||
# The default setting is:
|
||||
@@ -61,23 +54,11 @@ CUDA_ARCH = sm_60
|
||||
# 3. Use /usr/local/cuda
|
||||
CUDA_DIR = $(or $(CUDA_HOME),$(patsubst %/,%,$(dir \
|
||||
$(patsubst %/,%,$(dir $(shell command -v nvcc))))),/usr/local/cuda)
|
||||
# Derive nvcc/clang architecture flags from CUDA_ARCH. A comma-separated list
|
||||
# expands into one -gencode / --cuda-gpu-arch flag per architecture; otherwise
|
||||
# use the -arch / --cuda-gpu-arch shorthand.
|
||||
MFEM_COMMA := ,
|
||||
CUDA_ARCH_NUMS = $(patsubst sm_%,%,$(subst $(MFEM_COMMA), ,$(CUDA_ARCH)))
|
||||
NVCC_ARCH_FLAGS = $(strip $(if $(findstring $(MFEM_COMMA),$(CUDA_ARCH)),\
|
||||
$(foreach arch,$(CUDA_ARCH_NUMS),\
|
||||
-gencode arch=compute_$(arch)$(MFEM_COMMA)code=sm_$(arch)),\
|
||||
-arch=$(CUDA_ARCH)))
|
||||
CLANG_ARCH_FLAGS = $(strip $(if $(findstring $(MFEM_COMMA),$(CUDA_ARCH)),\
|
||||
$(foreach arch,$(CUDA_ARCH_NUMS),--cuda-gpu-arch=sm_$(arch)),\
|
||||
--cuda-gpu-arch=$(CUDA_ARCH)))
|
||||
# flags for clang+cuda
|
||||
CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) $(CLANG_ARCH_FLAGS)
|
||||
CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) --cuda-gpu-arch=$(CUDA_ARCH)
|
||||
# flags for nvcc
|
||||
NVCC_FLAGS = -x=cu --expt-extended-lambda --expt-relaxed-constexpr \
|
||||
$(NVCC_ARCH_FLAGS) -isystem "$(CUDA_DIR)/include"
|
||||
-arch=$(CUDA_ARCH) -isystem "$(CUDA_DIR)/include"
|
||||
# Prefixes for passing flags to the host compiler and linker when using
|
||||
# CUDA_CXX=nvcc
|
||||
CUDA_XCOMPILER = -Xcompiler=
|
||||
@@ -172,7 +153,6 @@ MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_SUPERLU5 = NO
|
||||
MFEM_USE_MUMPS = NO
|
||||
MFEM_USE_STRUMPACK = NO
|
||||
MFEM_USE_CUDSS = NO
|
||||
MFEM_USE_GINKGO = NO
|
||||
MFEM_USE_AMGX = NO
|
||||
MFEM_USE_MAGMA = NO
|
||||
@@ -388,19 +368,6 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
|
||||
$(SCOTCH_LIB) $(SCALAPACK_LIB)
|
||||
|
||||
# CUDSS library configuration
|
||||
CUDSS_DIR = @MFEM_DIR@/../cudss
|
||||
CUDSS_INCLUDE_DIR = $(CUDSS_DIR)/include
|
||||
CUDSS_LIBRARY_DIR = $(CUDSS_DIR)/lib
|
||||
CUDSS_OPT = -I$(CUDSS_INCLUDE_DIR)
|
||||
CUDSS_LIB = \
|
||||
$(XLINKER)-rpath,$(CUDSS_LIBRARY_DIR) -L$(CUDSS_LIBRARY_DIR) -lcudss
|
||||
# The cuDSS communication and threading libraries.
|
||||
MFEM_CUDSS_COMM_LIB = $(abspath $(wildcard $(or $(CUDSS_COMM_LIB),\
|
||||
$(subst @MFEM_DIR@,$(MFEM_DIR), $(CUDSS_LIBRARY_DIR)/libcudss_commlayer_openmpi.so))))
|
||||
MFEM_CUDSS_THREADING_LIB = $(abspath $(wildcard $(or $(CUDSS_THREADING_LIB),\
|
||||
$(subst @MFEM_DIR@,$(MFEM_DIR),$(CUDSS_LIBRARY_DIR)/libcudss_mtlayer_gomp.so))))
|
||||
|
||||
# Ginkgo library configuration
|
||||
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
|
||||
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
|
||||
@@ -654,7 +621,7 @@ PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
AXOM_DIR = @MFEM_DIR@/../axom
|
||||
TRIBOL_DIR = @MFEM_DIR@/../tribol
|
||||
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
|
||||
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -ltribol_shared -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
|
||||
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
|
||||
-laxom_slam -laxom_slic -laxom_core
|
||||
|
||||
# Enzyme configuration
|
||||
@@ -678,15 +645,3 @@ VERBOSE = NO
|
||||
|
||||
# Optional build tag
|
||||
MFEM_BUILD_TAG = $(shell uname -snm)
|
||||
|
||||
# Enable -pedantic flag only for gcc or clang. nvcc complains with -pedantic
|
||||
# because of line directives.
|
||||
PEDANTIC_FLAG = $(if \
|
||||
$(findstring NVIDIA,$(shell $(MFEM_CXX) --version 2>&1)),, \
|
||||
$(if $(or \
|
||||
$(findstring gcc version,$(shell $(MFEM_CXX) -v 2>&1)), \
|
||||
$(findstring clang version,$(shell $(MFEM_CXX) -v 2>&1))),-pedantic,))
|
||||
# Enable shadow warnings for clang only; GCC's -Wshadow flags more.
|
||||
SHADOW_WARNING_FLAG = $(if $(findstring clang,\
|
||||
$(shell $(MFEM_HOST_CXX) --version 2>/dev/null)),-Wshadow,)
|
||||
WARNING_FLAGS = $(PEDANTIC_FLAG) -Wall $(SHADOW_WARNING_FLAG)
|
||||
|
||||
@@ -39,8 +39,3 @@ when a picture was added for documentation.
|
||||
If that is the case, make sure the failure is indeed justified, and rerun the
|
||||
push command with the `--no-verify` option. This will skip the hooks, allowing
|
||||
you to push those changes.
|
||||
|
||||
The `branch-history` check is run automatically through GitHub Actions. If a
|
||||
branch is known to have a large number of changes that are legitimate, the
|
||||
check can be overridden by setting the label 'branch-history-override' on the
|
||||
pull request.
|
||||
|
||||
@@ -1,131 +0,0 @@
|
||||
// Define the cube sizes
|
||||
L_outer = 1.0;
|
||||
L_inner = 0.5;
|
||||
|
||||
// Set mesh size and algorithm
|
||||
mesh_size = 0.4;
|
||||
Mesh.Algorithm3D = 1; // Delaunay algorithm for 3D mesh
|
||||
Mesh.CharacteristicLengthFactor = 1.0;
|
||||
Mesh.MshFileVersion = 2.2;
|
||||
|
||||
// Define center point for concentric cubes
|
||||
cx = 0.5;
|
||||
cy = 0.5;
|
||||
cz = 0.5;
|
||||
|
||||
// Define the points (vertices of the outer cube)
|
||||
Point(1) = {cx-L_outer/2, cy-L_outer/2, cz-L_outer/2, mesh_size};
|
||||
Point(2) = {cx+L_outer/2, cy-L_outer/2, cz-L_outer/2, mesh_size};
|
||||
Point(3) = {cx+L_outer/2, cy+L_outer/2, cz-L_outer/2, mesh_size};
|
||||
Point(4) = {cx-L_outer/2, cy+L_outer/2, cz-L_outer/2, mesh_size};
|
||||
Point(5) = {cx-L_outer/2, cy-L_outer/2, cz+L_outer/2, mesh_size};
|
||||
Point(6) = {cx+L_outer/2, cy-L_outer/2, cz+L_outer/2, mesh_size};
|
||||
Point(7) = {cx+L_outer/2, cy+L_outer/2, cz+L_outer/2, mesh_size};
|
||||
Point(8) = {cx-L_outer/2, cy+L_outer/2, cz+L_outer/2, mesh_size};
|
||||
|
||||
// Define the points (vertices of the inner cube)
|
||||
Point(9) = {cx-L_inner/2, cy-L_inner/2, cz-L_inner/2, mesh_size};
|
||||
Point(10) = {cx+L_inner/2, cy-L_inner/2, cz-L_inner/2, mesh_size};
|
||||
Point(11) = {cx+L_inner/2, cy+L_inner/2, cz-L_inner/2, mesh_size};
|
||||
Point(12) = {cx-L_inner/2, cy+L_inner/2, cz-L_inner/2, mesh_size};
|
||||
Point(13) = {cx-L_inner/2, cy-L_inner/2, cz+L_inner/2, mesh_size};
|
||||
Point(14) = {cx+L_inner/2, cy-L_inner/2, cz+L_inner/2, mesh_size};
|
||||
Point(15) = {cx+L_inner/2, cy+L_inner/2, cz+L_inner/2, mesh_size};
|
||||
Point(16) = {cx-L_inner/2, cy+L_inner/2, cz+L_inner/2, mesh_size};
|
||||
|
||||
// Define the lines (edges of the outer cube)
|
||||
Line(1) = {1, 2};
|
||||
Line(2) = {2, 3};
|
||||
Line(3) = {3, 4};
|
||||
Line(4) = {4, 1};
|
||||
Line(5) = {5, 6};
|
||||
Line(6) = {6, 7};
|
||||
Line(7) = {7, 8};
|
||||
Line(8) = {8, 5};
|
||||
Line(9) = {1, 5};
|
||||
Line(10) = {2, 6};
|
||||
Line(11) = {3, 7};
|
||||
Line(12) = {4, 8};
|
||||
|
||||
// Define the lines (edges of the inner cube)
|
||||
Line(13) = {9, 10};
|
||||
Line(14) = {10, 11};
|
||||
Line(15) = {11, 12};
|
||||
Line(16) = {12, 9};
|
||||
Line(17) = {13, 14};
|
||||
Line(18) = {14, 15};
|
||||
Line(19) = {15, 16};
|
||||
Line(20) = {16, 13};
|
||||
Line(21) = {9, 13};
|
||||
Line(22) = {10, 14};
|
||||
Line(23) = {11, 15};
|
||||
Line(24) = {12, 16};
|
||||
|
||||
// Define the surfaces (faces of the outer cube)
|
||||
Line Loop(1) = {1, 2, 3, 4};
|
||||
Plane Surface(1) = {1};
|
||||
|
||||
Line Loop(2) = {5, 6, 7, 8};
|
||||
Plane Surface(2) = {2};
|
||||
|
||||
Line Loop(3) = {9, 5, -10, -1};
|
||||
Plane Surface(3) = {3};
|
||||
|
||||
Line Loop(4) = {10, 6, -11, -2};
|
||||
Plane Surface(4) = {4};
|
||||
|
||||
Line Loop(5) = {11, 7, -12, -3};
|
||||
Plane Surface(5) = {5};
|
||||
|
||||
Line Loop(6) = {12, 8, -9, -4};
|
||||
Plane Surface(6) = {6};
|
||||
|
||||
// Define the surfaces (faces of the inner cube)
|
||||
Line Loop(7) = {13, 14, 15, 16};
|
||||
Plane Surface(7) = {7};
|
||||
|
||||
Line Loop(8) = {17, 18, 19, 20};
|
||||
Plane Surface(8) = {8};
|
||||
|
||||
Line Loop(9) = {21, 17, -22, -13};
|
||||
Plane Surface(9) = {9};
|
||||
|
||||
Line Loop(10) = {22, 18, -23, -14};
|
||||
Plane Surface(10) = {10};
|
||||
|
||||
Line Loop(11) = {23, 19, -24, -15};
|
||||
Plane Surface(11) = {11};
|
||||
|
||||
Line Loop(12) = {24, 20, -21, -16};
|
||||
Plane Surface(12) = {12};
|
||||
|
||||
// Define the volumes
|
||||
Surface Loop(1) = {1, 2, 3, 4, 5, 6};
|
||||
Surface Loop(2) = {7, 8, 9, 10, 11, 12};
|
||||
Volume(1) = {1, 2}; // Outer volume with inner hole
|
||||
Volume(2) = {2}; // Inner volume
|
||||
|
||||
// Assign physical groups
|
||||
Physical Volume(1) = {1}; // Outer volume
|
||||
Physical Volume(2) = {2}; // Inner volume
|
||||
|
||||
// Outer cube surfaces
|
||||
Physical Surface(1) = {1}; // Outer bottom
|
||||
Physical Surface(2) = {2}; // Outer top
|
||||
Physical Surface(3) = {3}; // Outer front
|
||||
Physical Surface(4) = {4}; // Outer right
|
||||
Physical Surface(5) = {5}; // Outer back
|
||||
Physical Surface(6) = {6}; // Outer left
|
||||
|
||||
// Inner cube surfaces
|
||||
Physical Surface(7) = {7}; // Inner bottom (-xy)
|
||||
Physical Surface(8) = {8}; // Inner top (+xy)
|
||||
Physical Surface(9) = {9}; // Inner front (-xz)
|
||||
Physical Surface(10) = {10}; // Inner right (+yz)
|
||||
Physical Surface(11) = {11}; // Inner back (+xz)
|
||||
Physical Surface(12) = {12}; // Inner left (-yz)
|
||||
|
||||
// Mesh control
|
||||
Mesh.OptimizeNetgen = 1;
|
||||
Mesh.Optimize = 1;
|
||||
Mesh.ElementOrder = 1;
|
||||
@@ -1,907 +0,0 @@
|
||||
$MeshFormat
|
||||
2.2 0 8
|
||||
$EndMeshFormat
|
||||
$Nodes
|
||||
138
|
||||
1 0 0 0
|
||||
2 1 0 0
|
||||
3 1 1 0
|
||||
4 0 1 0
|
||||
5 0 0 1
|
||||
6 1 0 1
|
||||
7 1 1 1
|
||||
8 0 1 1
|
||||
9 0.25 0.25 0.25
|
||||
10 0.75 0.25 0.25
|
||||
11 0.75 0.75 0.25
|
||||
12 0.25 0.75 0.25
|
||||
13 0.25 0.25 0.75
|
||||
14 0.75 0.25 0.75
|
||||
15 0.75 0.75 0.75
|
||||
16 0.25 0.75 0.75
|
||||
17 0.3333333333325025 0 0
|
||||
18 0.6666666666657889 0 0
|
||||
19 1 0.3333333333325025 0
|
||||
20 1 0.6666666666657889 0
|
||||
21 0.6666666666675911 1 0
|
||||
22 0.3333333333347203 1 0
|
||||
23 0 0.6666666666675911 0
|
||||
24 0 0.3333333333347203 0
|
||||
25 0.3333333333325025 0 1
|
||||
26 0.6666666666657889 0 1
|
||||
27 1 0.3333333333325025 1
|
||||
28 1 0.6666666666657889 1
|
||||
29 0.6666666666675911 1 1
|
||||
30 0.3333333333347203 1 1
|
||||
31 0 0.6666666666675911 1
|
||||
32 0 0.3333333333347203 1
|
||||
33 0 0 0.3333333333325025
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||||
34 0 0 0.6666666666657889
|
||||
35 1 0 0.3333333333325025
|
||||
36 1 0 0.6666666666657889
|
||||
37 1 1 0.3333333333325025
|
||||
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||||
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||||
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||||
41 0.5000000000003468 0.25 0.25
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||||
42 0.75 0.5000000000003468 0.25
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||||
43 0.5000000000013763 0.75 0.25
|
||||
44 0.25 0.5000000000013763 0.25
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||||
45 0.5000000000003468 0.25 0.75
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||||
46 0.75 0.5000000000003468 0.75
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||||
47 0.5000000000013763 0.75 0.75
|
||||
48 0.25 0.5000000000013763 0.75
|
||||
49 0.25 0.25 0.5000000000003468
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||||
50 0.75 0.25 0.5000000000003468
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||||
51 0.75 0.75 0.5000000000003468
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||||
52 0.25 0.75 0.5000000000003468
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||||
53 0.7113248654055673 0.4999999999991457 0
|
||||
54 0.2886751345942123 0.5000000000011557 0
|
||||
55 0.5000000000006117 0.7525600817161773 0
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||||
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||||
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||||
58 0.757680245147464 0.2423197548520695 0
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||||
59 0.2423197548507857 0.2423197548513912 0
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||||
60 0.7576802451491019 0.7576802451486099 0
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||||
61 0.7113248654055673 0.4999999999991457 1
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||||
62 0.2886751345942123 0.5000000000011557 1
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||||
63 0.5000000000006117 0.7525600817161773 1
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||||
64 0.4999999999993867 0.2474399182839603 1
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||||
65 0.2423197548524782 0.7576802451481532 1
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||||
66 0.757680245147464 0.2423197548520695 1
|
||||
67 0.2423197548507857 0.2423197548513912 1
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||||
68 0.7576802451491019 0.7576802451486099 1
|
||||
69 0.4999999999993203 0 0.301447615129799
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||||
70 0.4999999999992795 0 0.7028666213189801
|
||||
71 0.7525600817158393 0 0.5007190394076877
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||||
72 0.2474399182836191 0 0.5007190394076877
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||||
73 0.7576802451479793 0 0.7576802451479793
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||||
74 0.2423197548517962 0 0.7576802451477375
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||||
75 0.7576802451484569 0 0.2423197548510767
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||||
76 0.2423197548513188 0 0.2423197548513187
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||||
77 1 0.4999999999993203 0.301447615129799
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||||
78 1 0.4999999999992795 0.7028666213189801
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||||
79 1 0.7525600817158394 0.5007190394076877
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||||
80 1 0.2474399182836191 0.5007190394076877
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||||
81 1 0.7576802451479794 0.7576802451479794
|
||||
82 1 0.2423197548517962 0.7576802451477376
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||||
83 1 0.7576802451484569 0.2423197548510768
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||||
84 1 0.2423197548513188 0.2423197548513188
|
||||
85 0.5000000000008327 1 0.3014476151298047
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||||
86 0.500000000000961 1 0.7028666213191928
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||||
87 0.2474399182842484 1 0.5007190394077241
|
||||
88 0.7525600817164384 1 0.5007190394078933
|
||||
89 0.2423197548520873 1 0.7576802451480517
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||||
90 0.7576802451481496 1 0.2423197548518761
|
||||
91 0.2423197548516099 1 0.2423197548510044
|
||||
92 0.7576802451486874 1 0.7576802451481952
|
||||
93 0 0.5000000000008327 0.3014476151298047
|
||||
94 0 0.500000000000961 0.7028666213191928
|
||||
95 0 0.2474399182842484 0.5007190394077241
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||||
96 0 0.7525600817164384 0.5007190394078933
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||||
97 0 0.2423197548520873 0.7576802451480517
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||||
98 0 0.7576802451481496 0.2423197548518761
|
||||
99 0 0.2423197548516099 0.2423197548510044
|
||||
100 0 0.7576802451486874 0.7576802451481952
|
||||
101 0.3968750000003409 0.603125000000244 0.25
|
||||
102 0.4374999999998713 0.4375000000001287 0.25
|
||||
103 0.5739583333335919 0.5718750000001767 0.25
|
||||
104 0.6093749999999631 0.3906250000003402 0.25
|
||||
105 0.3968750000003409 0.603125000000244 0.75
|
||||
106 0.4374999999998713 0.4375000000001287 0.75
|
||||
107 0.5739583333335919 0.5718750000001767 0.75
|
||||
108 0.6093749999999631 0.3906250000003402 0.75
|
||||
109 0.3806942419826734 0.25 0.3806942419826734
|
||||
110 0.5625000000001735 0.25 0.4375000000000001
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||||
111 0.4254282069971791 0.25 0.5712615403304835
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||||
112 0.6093749999998808 0.25 0.6093749999998808
|
||||
113 0.75 0.3806942419826734 0.3806942419826734
|
||||
114 0.75 0.5625000000001735 0.4375000000000001
|
||||
115 0.75 0.4254282069971791 0.5712615403304835
|
||||
116 0.75 0.6093749999998808 0.6093749999998808
|
||||
117 0.3968750000004991 0.75 0.3968750000002804
|
||||
118 0.4375000000000001 0.75 0.5625000000004308
|
||||
119 0.5739583333336153 0.75 0.4281250000000707
|
||||
120 0.6093749999998166 0.75 0.6093749999993661
|
||||
121 0.25 0.3968750000004991 0.3968750000002804
|
||||
122 0.25 0.4375000000000001 0.5625000000004308
|
||||
123 0.25 0.5739583333336153 0.4281250000000707
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||||
124 0.25 0.6093749999998166 0.6093749999993661
|
||||
125 0.4962939304035875 0.5214350017087855 0.4925553109323813
|
||||
126 0.3432581985549767 0.6471275530923523 0.3554206606168006
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||||
127 0.6442168181713744 0.5929232373214773 0.3593785632300704
|
||||
128 0.625174517421737 0.3491579444372839 0.3604636129462503
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||||
129 0.6130544111091688 0.6576364353993367 0.5046720648819553
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||||
130 0.4281518698369243 0.3632662294430484 0.3548726263205102
|
||||
131 0.3639383531355198 0.3520949250221278 0.4978389662613994
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||||
132 0.629585530087249 0.3489878162230438 0.5124654846339122
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||||
133 0.3710853378652663 0.6517586292698121 0.6382643241302075
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||||
134 0.5917018263727056 0.6522525456211955 0.6390764961119443
|
||||
135 0.3530810314228338 0.4582477062424107 0.6430239639637545
|
||||
136 0.6571010904289998 0.5300774811423468 0.6603970500567977
|
||||
137 0.6484596018596915 0.361399676127967 0.6360267588157177
|
||||
138 0.4782020887035478 0.3534611476388013 0.6141275027013793
|
||||
$EndNodes
|
||||
$Elements
|
||||
760
|
||||
1 2 2 1 1 1 17 59
|
||||
2 2 2 1 1 24 1 59
|
||||
3 2 2 1 1 18 2 58
|
||||
4 2 2 1 1 2 19 58
|
||||
5 2 2 1 1 20 3 60
|
||||
6 2 2 1 1 3 21 60
|
||||
7 2 2 1 1 22 4 57
|
||||
8 2 2 1 1 4 23 57
|
||||
9 2 2 1 1 17 18 56
|
||||
10 2 2 1 1 17 56 59
|
||||
11 2 2 1 1 56 18 58
|
||||
12 2 2 1 1 19 20 53
|
||||
13 2 2 1 1 19 53 58
|
||||
14 2 2 1 1 53 20 60
|
||||
15 2 2 1 1 21 22 55
|
||||
16 2 2 1 1 21 55 60
|
||||
17 2 2 1 1 55 22 57
|
||||
18 2 2 1 1 23 24 54
|
||||
19 2 2 1 1 23 54 57
|
||||
20 2 2 1 1 54 24 59
|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
29 2 2 2 2 26 6 66
|
||||
30 2 2 2 2 6 27 66
|
||||
31 2 2 2 2 28 7 68
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
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|
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|
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|
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|
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|
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|
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47 2 2 2 2 62 61 63
|
||||
48 2 2 2 2 61 62 64
|
||||
49 2 2 2 2 63 61 68
|
||||
50 2 2 2 2 61 64 66
|
||||
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|
||||
52 2 2 2 2 64 62 67
|
||||
53 2 2 3 3 17 1 76
|
||||
54 2 2 3 3 1 33 76
|
||||
55 2 2 3 3 2 18 75
|
||||
56 2 2 3 3 35 2 75
|
||||
57 2 2 3 3 5 25 74
|
||||
58 2 2 3 3 34 5 74
|
||||
59 2 2 3 3 26 6 73
|
||||
60 2 2 3 3 6 36 73
|
||||
61 2 2 3 3 18 17 69
|
||||
62 2 2 3 3 69 17 76
|
||||
63 2 2 3 3 18 69 75
|
||||
64 2 2 3 3 25 26 70
|
||||
65 2 2 3 3 25 70 74
|
||||
66 2 2 3 3 70 26 73
|
||||
67 2 2 3 3 33 34 72
|
||||
68 2 2 3 3 33 72 76
|
||||
69 2 2 3 3 72 34 74
|
||||
70 2 2 3 3 36 35 71
|
||||
71 2 2 3 3 71 35 75
|
||||
72 2 2 3 3 36 71 73
|
||||
73 2 2 3 3 69 70 71
|
||||
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|
||||
75 2 2 3 3 69 71 75
|
||||
76 2 2 3 3 72 69 76
|
||||
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|
||||
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|
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102 2 2 4 4 80 77 84
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103 2 2 4 4 79 78 81
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112 2 2 5 5 8 40 89
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|
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|
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
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|
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|
||||
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|
||||
153 2 2 6 6 93 95 99
|
||||
154 2 2 6 6 96 93 98
|
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|
||||
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|
||||
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|
||||
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||||
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|
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|
||||
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||||
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|
||||
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|
||||
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|
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|
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|
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|
||||
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|
||||
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|
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|
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|
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|
||||
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|
||||
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
||||
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|
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|
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|
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|
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|
||||
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|
||||
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|
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|
||||
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|
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|
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|
||||
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|
||||
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|
||||
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|
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|
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|
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|
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|
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|
||||
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|
||||
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|
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387 4 2 1 1 114 11 79 83
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|
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389 4 2 1 1 34 13 74 72
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391 4 2 1 1 34 97 13 95
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392 4 2 1 1 20 19 42 53
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432 4 2 1 1 14 27 66 6
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436 4 2 1 1 22 12 91 4
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437 4 2 1 1 20 11 83 3
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439 4 2 1 1 18 10 75 2
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|
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441 4 2 1 1 18 17 41 56
|
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|
||||
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|
||||
446 4 2 1 1 104 58 42 10
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||||
447 4 2 1 1 29 63 30 47
|
||||
448 4 2 1 1 77 78 79 114
|
||||
449 4 2 1 1 71 69 70 110
|
||||
450 4 2 1 1 42 103 11 53
|
||||
451 4 2 1 1 93 94 95 122
|
||||
452 4 2 1 1 118 87 86 85
|
||||
453 4 2 1 1 61 62 106 64
|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
464 4 2 1 1 77 83 20 42
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||||
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|
||||
466 4 2 1 1 43 85 90 21
|
||||
467 4 2 1 1 91 43 117 12
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||||
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|
||||
469 4 2 1 1 27 66 61 46
|
||||
470 4 2 1 1 68 28 61 46
|
||||
471 4 2 1 1 54 24 59 44
|
||||
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|
||||
473 4 2 1 1 23 54 57 44
|
||||
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|
||||
475 4 2 1 1 99 44 121 9
|
||||
476 4 2 1 1 42 58 104 53
|
||||
477 4 2 1 1 21 43 22 55
|
||||
478 4 2 1 1 53 20 11 42
|
||||
479 4 2 1 1 53 11 20 60
|
||||
480 4 2 1 1 106 67 48 13
|
||||
481 4 2 1 1 36 71 50 35
|
||||
482 4 2 1 1 52 87 39 40
|
||||
483 4 2 1 1 48 67 106 62
|
||||
484 4 2 1 1 72 70 13 74
|
||||
485 4 2 1 1 9 33 99 1
|
||||
486 4 2 1 1 3 37 11 83
|
||||
487 4 2 1 1 13 34 5 97
|
||||
488 4 2 1 1 12 39 4 98
|
||||
489 4 2 1 1 14 36 6 73
|
||||
490 4 2 1 1 15 38 92 7
|
||||
491 4 2 1 1 8 40 89 16
|
||||
492 4 2 1 1 75 35 2 10
|
||||
493 4 2 1 1 30 16 65 8
|
||||
494 4 2 1 1 14 27 6 82
|
||||
495 4 2 1 1 26 14 66 6
|
||||
496 4 2 1 1 16 31 8 100
|
||||
497 4 2 1 1 32 13 67 5
|
||||
498 4 2 1 1 13 67 5 25
|
||||
499 4 2 1 1 68 7 28 15
|
||||
500 4 2 1 1 29 15 7 68
|
||||
501 4 2 1 1 57 4 23 12
|
||||
502 4 2 1 1 22 12 4 57
|
||||
503 4 2 1 1 10 19 84 2
|
||||
504 4 2 1 1 9 59 1 24
|
||||
505 4 2 1 1 17 9 59 1
|
||||
506 4 2 1 1 18 10 2 58
|
||||
507 4 2 1 1 11 21 90 3
|
||||
508 4 2 1 1 20 11 3 60
|
||||
509 4 2 1 1 16 62 63 65
|
||||
510 4 2 1 1 11 53 55 60
|
||||
511 4 2 1 1 78 81 79 116
|
||||
512 4 2 1 1 71 112 70 73
|
||||
513 4 2 1 1 86 88 92 120
|
||||
514 4 2 1 1 96 94 124 100
|
||||
515 4 2 1 1 94 97 95 122
|
||||
516 4 2 1 1 89 118 87 86
|
||||
517 4 2 1 1 15 38 7 81
|
||||
518 4 2 1 1 102 44 59 9
|
||||
519 4 2 1 1 59 44 102 54
|
||||
520 4 2 1 1 110 71 69 75
|
||||
521 4 2 1 1 79 77 114 83
|
||||
522 4 2 1 1 76 69 109 72
|
||||
523 4 2 1 1 113 77 80 84
|
||||
524 4 2 1 1 93 99 121 95
|
||||
525 4 2 1 1 87 117 91 85
|
||||
526 4 2 1 1 90 119 43 11
|
||||
527 4 2 1 1 80 78 115 82
|
||||
528 4 2 1 1 88 119 85 90
|
||||
529 4 2 1 1 90 43 119 85
|
||||
530 4 2 1 1 46 108 66 61
|
||||
531 4 2 1 1 46 66 108 14
|
||||
532 4 2 1 1 26 14 6 73
|
||||
533 4 2 1 1 44 101 57 12
|
||||
534 4 2 1 1 44 57 101 54
|
||||
535 4 2 1 1 46 107 68 15
|
||||
536 4 2 1 1 46 68 107 61
|
||||
537 4 2 1 1 9 33 1 76
|
||||
538 4 2 1 1 100 124 48 94
|
||||
539 4 2 1 1 100 48 124 16
|
||||
540 4 2 1 1 25 70 13 45
|
||||
541 4 2 1 1 56 53 104 58
|
||||
542 4 2 1 1 61 64 108 66
|
||||
543 4 2 1 1 106 62 67 64
|
||||
544 4 2 1 1 102 59 54 56
|
||||
545 4 2 1 1 32 13 5 97
|
||||
546 4 2 1 1 30 16 8 89
|
||||
547 4 2 1 1 13 70 25 74
|
||||
548 4 2 1 1 97 122 48 13
|
||||
549 4 2 1 1 75 110 41 69
|
||||
550 4 2 1 1 54 57 101 55
|
||||
551 4 2 1 1 97 48 122 94
|
||||
552 4 2 1 1 47 118 89 86
|
||||
553 4 2 1 1 47 89 118 16
|
||||
554 4 2 1 1 17 9 1 76
|
||||
555 4 2 1 1 11 21 3 60
|
||||
556 4 2 1 1 10 19 2 58
|
||||
557 4 2 1 1 75 41 110 10
|
||||
558 4 2 1 1 61 63 68 107
|
||||
559 4 2 1 1 70 111 45 112
|
||||
560 4 2 1 1 78 115 46 116
|
||||
561 4 2 1 1 77 114 42 113
|
||||
562 4 2 1 1 69 41 109 110
|
||||
563 4 2 1 1 107 61 108 46
|
||||
564 4 2 1 1 103 42 104 53
|
||||
565 4 2 1 1 118 86 47 120
|
||||
566 4 2 1 1 94 124 48 122
|
||||
567 4 2 1 1 117 119 43 85
|
||||
568 4 2 1 1 123 44 121 93
|
||||
569 4 2 1 1 101 54 102 44
|
||||
570 4 2 1 1 48 105 62 106
|
||||
571 4 2 1 1 91 43 12 22
|
||||
572 4 2 1 1 91 43 22 85
|
||||
573 4 2 1 1 93 12 23 98
|
||||
574 4 2 1 1 93 23 12 44
|
||||
575 4 2 1 1 46 81 116 15
|
||||
576 4 2 1 1 46 116 81 78
|
||||
577 4 2 1 1 92 47 120 15
|
||||
578 4 2 1 1 120 47 92 86
|
||||
579 4 2 1 1 46 82 115 78
|
||||
580 4 2 1 1 46 115 82 14
|
||||
581 4 2 1 1 73 45 112 70
|
||||
582 4 2 1 1 73 112 45 14
|
||||
583 4 2 1 1 99 44 9 24
|
||||
584 4 2 1 1 99 44 24 93
|
||||
585 4 2 1 1 84 42 113 77
|
||||
586 4 2 1 1 84 113 42 10
|
||||
587 4 2 1 1 76 41 109 69
|
||||
588 4 2 1 1 109 41 76 9
|
||||
589 4 2 1 1 42 83 114 77
|
||||
590 4 2 1 1 42 114 83 11
|
||||
591 4 2 2 2 135 13 122 131
|
||||
592 4 2 2 2 132 138 125 110
|
||||
593 4 2 2 2 138 108 125 106
|
||||
594 4 2 2 2 136 108 125 137
|
||||
595 4 2 2 2 110 138 125 131
|
||||
596 4 2 2 2 136 107 134 125
|
||||
597 4 2 2 2 122 135 131 125
|
||||
598 4 2 2 2 13 49 122 131
|
||||
599 4 2 2 2 136 108 137 46
|
||||
600 4 2 2 2 110 138 131 111
|
||||
601 4 2 2 2 132 138 110 112
|
||||
602 4 2 2 2 106 107 108 125
|
||||
603 4 2 2 2 138 112 137 45
|
||||
604 4 2 2 2 104 127 125 128
|
||||
605 4 2 2 2 113 115 114 125
|
||||
606 4 2 2 2 131 122 125 121
|
||||
607 4 2 2 2 112 45 14 137
|
||||
608 4 2 2 2 110 131 125 130
|
||||
609 4 2 2 2 115 116 114 125
|
||||
610 4 2 2 2 132 138 112 137
|
||||
611 4 2 2 2 50 137 115 132
|
||||
612 4 2 2 2 104 127 128 42
|
||||
613 4 2 2 2 105 134 125 133
|
||||
614 4 2 2 2 129 120 51 119
|
||||
615 4 2 2 2 104 130 128 125
|
||||
616 4 2 2 2 105 134 133 47
|
||||
617 4 2 2 2 135 106 138 125
|
||||
618 4 2 2 2 106 105 107 125
|
||||
619 4 2 2 2 138 108 106 45
|
||||
620 4 2 2 2 104 130 125 102
|
||||
621 4 2 2 2 104 127 42 103
|
||||
622 4 2 2 2 109 131 49 111
|
||||
623 4 2 2 2 106 135 48 105
|
||||
624 4 2 2 2 126 101 43 125
|
||||
625 4 2 2 2 138 137 125 108
|
||||
626 4 2 2 2 104 127 103 125
|
||||
627 4 2 2 2 116 114 129 51
|
||||
628 4 2 2 2 136 108 46 107
|
||||
629 4 2 2 2 136 108 107 125
|
||||
630 4 2 2 2 52 124 123 125
|
||||
631 4 2 2 2 132 112 110 50
|
||||
632 4 2 2 2 44 121 125 123
|
||||
633 4 2 2 2 131 122 121 49
|
||||
634 4 2 2 2 105 134 47 107
|
||||
635 4 2 2 2 106 13 135 138
|
||||
636 4 2 2 2 52 133 125 118
|
||||
637 4 2 2 2 103 43 101 125
|
||||
638 4 2 2 2 117 43 119 125
|
||||
639 4 2 2 2 105 134 107 125
|
||||
640 4 2 2 2 137 115 132 125
|
||||
641 4 2 2 2 50 137 132 112
|
||||
642 4 2 2 2 106 135 105 125
|
||||
643 4 2 2 2 102 101 44 125
|
||||
644 4 2 2 2 104 130 102 41
|
||||
645 4 2 2 2 138 45 13 111
|
||||
646 4 2 2 2 131 138 135 13
|
||||
647 4 2 2 2 138 112 45 111
|
||||
648 4 2 2 2 131 138 13 111
|
||||
649 4 2 2 2 107 134 15 136
|
||||
650 4 2 2 2 118 52 117 125
|
||||
651 4 2 2 2 101 126 12 44
|
||||
652 4 2 2 2 104 130 41 128
|
||||
653 4 2 2 2 138 137 108 45
|
||||
654 4 2 2 2 133 118 16 47
|
||||
655 4 2 2 2 44 101 126 125
|
||||
656 4 2 2 2 133 134 118 47
|
||||
657 4 2 2 2 133 134 125 118
|
||||
658 4 2 2 2 124 122 123 125
|
||||
659 4 2 2 2 129 118 119 125
|
||||
660 4 2 2 2 102 104 103 125
|
||||
661 4 2 2 2 135 48 13 106
|
||||
662 4 2 2 2 123 122 121 125
|
||||
663 4 2 2 2 103 127 43 125
|
||||
664 4 2 2 2 106 45 13 138
|
||||
665 4 2 2 2 103 11 127 42
|
||||
666 4 2 2 2 127 51 129 114
|
||||
667 4 2 2 2 13 49 131 111
|
||||
668 4 2 2 2 137 108 14 46
|
||||
669 4 2 2 2 15 47 134 107
|
||||
670 4 2 2 2 10 41 128 104
|
||||
671 4 2 2 2 16 118 133 52
|
||||
672 4 2 2 2 46 107 15 136
|
||||
673 4 2 2 2 41 102 9 130
|
||||
674 4 2 2 2 128 50 132 110
|
||||
675 4 2 2 2 10 41 110 128
|
||||
676 4 2 2 2 50 137 112 14
|
||||
677 4 2 2 2 130 102 9 44
|
||||
678 4 2 2 2 105 133 16 47
|
||||
679 4 2 2 2 127 11 103 43
|
||||
680 4 2 2 2 128 130 41 110
|
||||
681 4 2 2 2 116 134 15 51
|
||||
682 4 2 2 2 137 45 14 108
|
||||
683 4 2 2 2 12 126 101 43
|
||||
684 4 2 2 2 133 48 135 105
|
||||
685 4 2 2 2 128 42 10 104
|
||||
686 4 2 2 2 131 9 109 49
|
||||
687 4 2 2 2 118 117 119 125
|
||||
688 4 2 2 2 102 103 101 125
|
||||
689 4 2 2 2 129 118 125 134
|
||||
690 4 2 2 2 125 129 116 114
|
||||
691 4 2 2 2 117 126 43 125
|
||||
692 4 2 2 2 126 117 12 52
|
||||
693 4 2 2 2 52 126 117 125
|
||||
694 4 2 2 2 12 117 126 43
|
||||
695 4 2 2 2 127 51 114 11
|
||||
696 4 2 2 2 114 129 127 125
|
||||
697 4 2 2 2 127 119 43 125
|
||||
698 4 2 2 2 119 11 127 43
|
||||
699 4 2 2 2 127 113 114 125
|
||||
700 4 2 2 2 127 113 42 114
|
||||
701 4 2 2 2 128 130 110 125
|
||||
702 4 2 2 2 15 47 120 134
|
||||
703 4 2 2 2 127 11 114 42
|
||||
704 4 2 2 2 120 47 118 134
|
||||
705 4 2 2 2 44 130 102 125
|
||||
706 4 2 2 2 44 126 12 123
|
||||
707 4 2 2 2 123 44 126 125
|
||||
708 4 2 2 2 129 118 134 120
|
||||
709 4 2 2 2 110 132 128 125
|
||||
710 4 2 2 2 128 127 125 113
|
||||
711 4 2 2 2 128 127 113 42
|
||||
712 4 2 2 2 128 50 110 10
|
||||
713 4 2 2 2 113 42 10 128
|
||||
714 4 2 2 2 129 134 125 116
|
||||
715 4 2 2 2 127 51 11 119
|
||||
716 4 2 2 2 129 134 116 51
|
||||
717 4 2 2 2 127 51 119 129
|
||||
718 4 2 2 2 129 119 127 125
|
||||
719 4 2 2 2 110 131 130 109
|
||||
720 4 2 2 2 109 130 9 131
|
||||
721 4 2 2 2 121 130 9 44
|
||||
722 4 2 2 2 122 48 13 135
|
||||
723 4 2 2 2 44 121 130 125
|
||||
724 4 2 2 2 110 138 111 112
|
||||
725 4 2 2 2 131 138 125 135
|
||||
726 4 2 2 2 115 137 14 46
|
||||
727 4 2 2 2 126 52 12 123
|
||||
728 4 2 2 2 123 126 52 125
|
||||
729 4 2 2 2 50 137 14 115
|
||||
730 4 2 2 2 136 137 115 46
|
||||
731 4 2 2 2 121 9 131 49
|
||||
732 4 2 2 2 121 131 130 125
|
||||
733 4 2 2 2 131 130 9 121
|
||||
734 4 2 2 2 113 132 115 125
|
||||
735 4 2 2 2 113 50 115 132
|
||||
736 4 2 2 2 128 50 10 113
|
||||
737 4 2 2 2 132 113 128 125
|
||||
738 4 2 2 2 128 50 113 132
|
||||
739 4 2 2 2 133 105 135 125
|
||||
740 4 2 2 2 52 124 125 133
|
||||
741 4 2 2 2 133 48 105 16
|
||||
742 4 2 2 2 16 133 124 52
|
||||
743 4 2 2 2 136 137 125 115
|
||||
744 4 2 2 2 132 138 137 125
|
||||
745 4 2 2 2 41 130 9 109
|
||||
746 4 2 2 2 134 120 15 51
|
||||
747 4 2 2 2 129 118 120 119
|
||||
748 4 2 2 2 129 120 134 51
|
||||
749 4 2 2 2 135 122 124 125
|
||||
750 4 2 2 2 135 48 124 122
|
||||
751 4 2 2 2 133 48 16 124
|
||||
752 4 2 2 2 133 135 124 125
|
||||
753 4 2 2 2 133 48 124 135
|
||||
754 4 2 2 2 116 136 134 125
|
||||
755 4 2 2 2 115 136 116 125
|
||||
756 4 2 2 2 46 115 136 116
|
||||
757 4 2 2 2 136 134 15 116
|
||||
758 4 2 2 2 46 136 15 116
|
||||
759 4 2 2 2 109 41 130 110
|
||||
760 4 2 2 2 110 131 109 111
|
||||
$EndElements
|
||||
@@ -1,77 +0,0 @@
|
||||
// Square-in-square 2D geometry for MFEM
|
||||
// Creates concentric squares with different material attributes
|
||||
|
||||
// Define the square sizes
|
||||
L_outer = 2.0;
|
||||
L_inner = 0.5;
|
||||
|
||||
// Set mesh size and algorithm
|
||||
mesh_size = 1.0;
|
||||
Mesh.Algorithm = 6; // Frontal-Delaunay for 2D triangular mesh
|
||||
Mesh.CharacteristicLengthFactor = 1.0;
|
||||
Mesh.MshFileVersion = 2.2;
|
||||
|
||||
// Define center point for concentric squares
|
||||
cx = 0.0;
|
||||
cy = 0.0;
|
||||
|
||||
// Define the points (vertices of the outer square)
|
||||
Point(1) = {cx-L_outer/2, cy-L_outer/2, 0, mesh_size}; // bottom-left outer
|
||||
Point(2) = {cx+L_outer/2, cy-L_outer/2, 0, mesh_size}; // bottom-right outer
|
||||
Point(3) = {cx+L_outer/2, cy+L_outer/2, 0, mesh_size}; // top-right outer
|
||||
Point(4) = {cx-L_outer/2, cy+L_outer/2, 0, mesh_size}; // top-left outer
|
||||
|
||||
// Define the points (vertices of the inner square)
|
||||
Point(5) = {cx-L_inner/2, cy-L_inner/2, 0, mesh_size}; // bottom-left inner
|
||||
Point(6) = {cx+L_inner/2, cy-L_inner/2, 0, mesh_size}; // bottom-right inner
|
||||
Point(7) = {cx+L_inner/2, cy+L_inner/2, 0, mesh_size}; // top-right inner
|
||||
Point(8) = {cx-L_inner/2, cy+L_inner/2, 0, mesh_size}; // top-left inner
|
||||
|
||||
// Define the lines (edges of the outer square)
|
||||
Line(1) = {1, 2}; // bottom edge
|
||||
Line(2) = {2, 3}; // right edge
|
||||
Line(3) = {3, 4}; // top edge
|
||||
Line(4) = {4, 1}; // left edge
|
||||
|
||||
// Define the lines (edges of the inner square)
|
||||
Line(5) = {5, 6}; // bottom edge
|
||||
Line(6) = {6, 7}; // right edge
|
||||
Line(7) = {7, 8}; // top edge
|
||||
Line(8) = {8, 5}; // left edge
|
||||
|
||||
// Define the surfaces
|
||||
// Outer square boundary
|
||||
Line Loop(1) = {1, 2, 3, 4};
|
||||
|
||||
// Inner square boundary (hole in the outer region)
|
||||
Line Loop(2) = {5, 6, 7, 8};
|
||||
|
||||
// Define the surface areas
|
||||
// Outer region (annular region between squares)
|
||||
Plane Surface(1) = {1, 2}; // Outer loop minus inner loop (creates hole)
|
||||
|
||||
// Inner region (solid inner square)
|
||||
Plane Surface(2) = {2}; // Inner loop only
|
||||
|
||||
// Assign physical groups for materials
|
||||
Physical Surface(1) = {1}; // Outer material (annular region)
|
||||
Physical Surface(2) = {2}; // Inner material (solid square)
|
||||
|
||||
// Physical lines for boundary conditions
|
||||
// Outer square boundary edges
|
||||
Physical Line(1) = {1}; // outer bottom
|
||||
Physical Line(2) = {2}; // outer right
|
||||
Physical Line(3) = {3}; // outer top
|
||||
Physical Line(4) = {4}; // outer left
|
||||
|
||||
// Inner square boundary edges
|
||||
Physical Line(5) = {5}; // inner bottom
|
||||
Physical Line(6) = {6}; // inner right
|
||||
Physical Line(7) = {7}; // inner top
|
||||
Physical Line(8) = {8}; // inner left
|
||||
|
||||
// Mesh control for quality
|
||||
Mesh.OptimizeNetgen = 1;
|
||||
Mesh.Optimize = 1;
|
||||
Mesh.ElementOrder = 1;
|
||||
Mesh.RecombineAll = 0; // Keep triangular elements (don't recombine to quads)
|
||||
@@ -1,50 +0,0 @@
|
||||
$MeshFormat
|
||||
2.2 0 8
|
||||
$EndMeshFormat
|
||||
$Nodes
|
||||
13
|
||||
1 -1 -1 0
|
||||
2 1 -1 0
|
||||
3 1 1 0
|
||||
4 -1 1 0
|
||||
5 -0.25 -0.25 0
|
||||
6 0.25 -0.25 0
|
||||
7 0.25 0.25 0
|
||||
8 -0.25 0.25 0
|
||||
9 -2.752797989558076e-12 -1 0
|
||||
10 1 -2.752797989558076e-12 0
|
||||
11 2.752797989558076e-12 1 0
|
||||
12 -1 2.752797989558076e-12 0
|
||||
13 0 0 0
|
||||
$EndNodes
|
||||
$Elements
|
||||
28
|
||||
1 1 2 1 1 1 9
|
||||
2 1 2 1 1 9 2
|
||||
3 1 2 2 2 2 10
|
||||
4 1 2 2 2 10 3
|
||||
5 1 2 3 3 3 11
|
||||
6 1 2 3 3 11 4
|
||||
7 1 2 4 4 4 12
|
||||
8 1 2 4 4 12 1
|
||||
9 1 2 5 5 5 6
|
||||
10 1 2 6 6 6 7
|
||||
11 1 2 7 7 7 8
|
||||
12 1 2 8 8 8 5
|
||||
13 2 2 1 1 6 5 9
|
||||
14 2 2 1 1 5 8 12
|
||||
15 2 2 1 1 7 6 10
|
||||
16 2 2 1 1 8 7 11
|
||||
17 2 2 1 1 9 5 1
|
||||
18 2 2 1 1 5 12 1
|
||||
19 2 2 1 1 6 9 2
|
||||
20 2 2 1 1 10 6 2
|
||||
21 2 2 1 1 7 10 3
|
||||
22 2 2 1 1 11 7 3
|
||||
23 2 2 1 1 8 11 4
|
||||
24 2 2 1 1 8 4 12
|
||||
25 2 2 2 2 5 6 13
|
||||
26 2 2 2 2 8 5 13
|
||||
27 2 2 2 2 6 7 13
|
||||
28 2 2 2 2 7 8 13
|
||||
$EndElements
|
||||
@@ -1,38 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see fem/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
# PYRAMID = 7
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
2
|
||||
1 3 0 1 4 3
|
||||
1 2 1 2 4
|
||||
|
||||
boundary
|
||||
5
|
||||
1 1 0 1
|
||||
1 1 1 2
|
||||
1 1 2 4
|
||||
1 1 4 3
|
||||
1 1 3 0
|
||||
|
||||
vertices
|
||||
5
|
||||
2
|
||||
0 0
|
||||
1 0
|
||||
2 0
|
||||
0 1
|
||||
1 1
|
||||
@@ -1083,8 +1083,7 @@ EXCLUDE_PATTERNS =
|
||||
# ANamespace::AClass, ANamespace::*Test
|
||||
|
||||
EXCLUDE_SYMBOLS = mfem::internal \
|
||||
mfem::kernels::internal \
|
||||
mfem::future::detail
|
||||
mfem::kernels::internal
|
||||
|
||||
# The EXAMPLE_PATH tag can be used to specify one or more files or directories
|
||||
# that contain example code fragments that are included (see the \include
|
||||
|
||||
@@ -201,7 +201,6 @@ namespace mfem {
|
||||
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
|
||||
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
|
||||
* - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
|
||||
* - <a class="el" href="nurbs__surface_8cpp_source.html">NURBS Surface</a>: interpolate a 3D Surface in a NURBS Patch
|
||||
*
|
||||
* <H3>Miniapps</H3>
|
||||
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
|
||||
@@ -246,9 +245,6 @@ namespace mfem {
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
* - <a class="el" href="lor__elast_8cpp_source.html">LOR Elasticity</a>: solve linear elasticity with LOR preconditioning on GPUs
|
||||
* - <a class="el" href="reflector_8cpp_source.html">Reflector Miniapp</a>: reflect a mesh about a plane
|
||||
* - <a class="el" href="ref321_8cpp_source.html">3:1 Refinement Miniapp</a>: perform 3:1 anisotropic mesh refinements
|
||||
* - <a class="el" href="pref321_8cpp_source.html">3:1 Refinement Miniapp</a>: parallel 3:1 anisotropic mesh refinements
|
||||
*
|
||||
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
|
||||
*/
|
||||
|
||||
@@ -215,7 +215,7 @@ if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME ex1p_ceed_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex1p> "-no-vis" "-d" "ceed-cpu" "-pa" "-a"
|
||||
$<TARGET_FILE:ex1p> "-no-vis" "-d ceed-cpu" "-pa" "-a"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -64,7 +64,7 @@ PARALLEL_NAME := Parallel AMGX example
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not build)
|
||||
|
||||
clean: clean-build clean-exec
|
||||
clean: clean-build
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
|
||||
@@ -64,12 +64,12 @@ ex1p-test-par: ex1p
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not built)
|
||||
|
||||
clean: clean-build clean-exec
|
||||
clean: clean-build clean-exec $(SUBDIRS_CLEAN)
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh mesh.*
|
||||
@rm -f sol.*
|
||||
@rm -f refined.mesh displaced.mesh mesh.* ex5.mesh
|
||||
@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.*
|
||||
|
||||
+21
-34
@@ -50,10 +50,6 @@
|
||||
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
|
||||
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
|
||||
//
|
||||
// Device simplices sample runs:
|
||||
// ex1 -pa -d gpu -m ../data/inline-tet.mesh
|
||||
// ex1 -pa -d gpu -m ../data/inline-tri.mesh
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// simple finite element discretization of the Poisson problem
|
||||
// -Delta u = 1 with homogeneous Dirichlet boundary conditions.
|
||||
@@ -142,25 +138,25 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use continuous
|
||||
// Lagrange finite elements of the specified order.
|
||||
// - If order < 1, we instead use an isoparametric/isogeometric space.
|
||||
// - If the mesh is simplicial and partial assembly is requested,
|
||||
// we use the positive basis, which supports device execution.
|
||||
// Lagrange finite elements of the specified order. If order < 1, we
|
||||
// instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
auto basis_type = (pa && mesh.IsSimplexMesh()) ?
|
||||
BasisType::Positive : BasisType::GaussLobatto;
|
||||
bool delete_fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim, basis_type);
|
||||
fec = new H1_FECollection(order, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
else if (mesh.GetNodes())
|
||||
{
|
||||
fec = mesh.GetNodes()->OwnFEC();
|
||||
delete_fec = false;
|
||||
cout << "Using isoparametric FEs: " << fec->Name() << endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim, basis_type);
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
FiniteElementSpace fespace(&mesh, fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
@@ -228,29 +224,17 @@ int main(int argc, char *argv[])
|
||||
// 11. Solve the linear system A X = B.
|
||||
if (!pa)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
if (Device::Allows(Backend::CUDA_MASK))
|
||||
{
|
||||
// Use cuDSS to solve the system.
|
||||
CuDSSSolver cudss_solver;
|
||||
cudss_solver.SetOperator(*A);
|
||||
cudss_solver.Mult(B, X);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
#else
|
||||
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
#endif
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -289,14 +273,17 @@ int main(int argc, char *argv[])
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << x << flush;
|
||||
}
|
||||
|
||||
// 15. Free the used memory.
|
||||
if (order > 0) { delete fec; }
|
||||
if (delete_fec)
|
||||
{
|
||||
delete fec;
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+2
-2
@@ -5,9 +5,9 @@
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh
|
||||
|
||||
+34
-60
@@ -42,11 +42,7 @@
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/beam-tet.mesh
|
||||
//
|
||||
// Device simplices sample runs:
|
||||
// mpirun -np 4 ex1p -pa -d gpu -m ../data/inline-tet.mesh
|
||||
// mpirun -np 4 ex1p -pa -d gpu -m ../data/inline-tri.mesh
|
||||
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// simple finite element discretization of the Poisson problem
|
||||
@@ -87,9 +83,6 @@ int main(int argc, char *argv[])
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
bool algebraic_ceed = false;
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
bool cudss_solver = false;
|
||||
#endif
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -109,10 +102,6 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&algebraic_ceed, "-a", "--algebraic",
|
||||
"-no-a", "--no-algebraic",
|
||||
"Use algebraic Ceed solver");
|
||||
#endif
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
args.AddOption(&cudss_solver, "-cudss", "--cudss-solver", "-no-cudss",
|
||||
"--no-cudss-solver", "Use the cuDSS Solver.");
|
||||
#endif
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
@@ -169,20 +158,19 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange finite elements of the specified order.
|
||||
// - If order < 1, we instead use an isoparametric/isogeometric space.
|
||||
// - If the mesh is simplicial and partial assembly is requested,
|
||||
// we use the positive basis, which supports device execution.
|
||||
// use continuous Lagrange finite elements of the specified order. If
|
||||
// order < 1, we instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
auto basis_type = (pa && pmesh.IsSimplexMesh()) ?
|
||||
BasisType::Positive : BasisType::GaussLobatto;
|
||||
bool delete_fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim, basis_type);
|
||||
fec = new H1_FECollection(order, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
else if (pmesh.GetNodes())
|
||||
{
|
||||
fec = pmesh.GetNodes()->OwnFEC();
|
||||
delete_fec = false;
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Using isoparametric FEs: " << fec->Name() << endl;
|
||||
@@ -190,7 +178,8 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim, basis_type);
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
delete_fec = true;
|
||||
}
|
||||
ParFiniteElementSpace fespace(&pmesh, fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
@@ -259,51 +248,33 @@ int main(int argc, char *argv[])
|
||||
// 13. Solve the linear system A X = B.
|
||||
// * With full assembly, use the BoomerAMG preconditioner from hypre.
|
||||
// * With partial assembly, use Jacobi smoothing, for now.
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
if (!pa && (Device::Allows(Backend::CUDA_MASK) && cudss_solver))
|
||||
Solver *prec = NULL;
|
||||
if (pa)
|
||||
{
|
||||
// Solve using a direct solver with cuDSS
|
||||
CuDSSSolver cudss_solver(MPI_COMM_WORLD);
|
||||
cudss_solver.SetMatrixSymType(
|
||||
CuDSSSolver::SYMMETRIC_POSITIVE_DEFINITE);
|
||||
cudss_solver.SetMatrixViewType(CuDSSSolver::UPPER);
|
||||
cudss_solver.SetOperator(*A);
|
||||
cudss_solver.Mult(B, X);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
Solver *prec = NULL;
|
||||
if (pa)
|
||||
if (UsesTensorBasis(fespace))
|
||||
{
|
||||
if (UsesTensorBasis(fespace))
|
||||
if (algebraic_ceed)
|
||||
{
|
||||
if (algebraic_ceed)
|
||||
{
|
||||
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
|
||||
}
|
||||
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new HypreBoomerAMG;
|
||||
}
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
if (prec)
|
||||
{
|
||||
cg.SetPreconditioner(*prec);
|
||||
}
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
delete prec;
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new HypreBoomerAMG;
|
||||
}
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
if (prec) { cg.SetPreconditioner(*prec); }
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
delete prec;
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
@@ -337,7 +308,10 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
if (order > 0) { delete fec; }
|
||||
if (delete_fec)
|
||||
{
|
||||
delete fec;
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+9
-27
@@ -302,21 +302,15 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Exact: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
|
||||
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
@@ -540,21 +534,15 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u.real()
|
||||
<< "window_title 'Solution: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u.imag()
|
||||
<< "window_title 'Solution: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization && exact_sol)
|
||||
{
|
||||
@@ -563,21 +551,15 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Error: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Error: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
|
||||
@@ -95,15 +95,6 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
if (amg_elast && !static_cond && reorder_space)
|
||||
{
|
||||
if (myid == 0)
|
||||
cerr << "\nThe AMG elasticity solver requires ordering byVDIM! "
|
||||
<< "Ignoring the specified option -nodes/--by-nodes.\n"
|
||||
<< endl;
|
||||
reorder_space = false;
|
||||
}
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
|
||||
+52
-11
@@ -5,8 +5,8 @@
|
||||
// Sample runs:
|
||||
// ex37 -alpha 10
|
||||
// ex37 -alpha 10 -pv
|
||||
// ex37 -lambda 0.1 -mu 0.1 -growth 1
|
||||
// ex37 -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// ex37 -lambda 0.1 -mu 0.1
|
||||
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -55,6 +55,53 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
LinearForm int_sigmoid_psi(psi.FESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
LinearForm int_der_sigmoid_psi(psi.FESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
const real_t f = int_sigmoid_psi.Sum() - target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
const real_t df = int_der_sigmoid_psi.Sum();
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
return int_sigmoid_psi.Sum();
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -133,11 +180,10 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-2;
|
||||
real_t itol = 1e-1;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -152,8 +198,6 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -288,7 +332,6 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
BilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -342,7 +385,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
|
||||
mfem::out << "\nStep = " << k << std::endl;
|
||||
|
||||
@@ -379,9 +422,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
GridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
+23
-183
@@ -137,7 +137,7 @@ public:
|
||||
exponent(exponent_), rho_min(rho_min_)
|
||||
{
|
||||
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be < 1");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
|
||||
MFEM_ASSERT(u, "displacement field is not set");
|
||||
MFEM_ASSERT(rho_filter, "density field is not set");
|
||||
}
|
||||
@@ -231,12 +231,9 @@ private:
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
FiniteElementSpace * fes = nullptr;
|
||||
Array<int> ess_bdr;
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> neumann_bdr;
|
||||
GridFunction * u = nullptr;
|
||||
LinearForm * b = nullptr;
|
||||
BilinearForm * a = nullptr;
|
||||
OperatorPtr A;
|
||||
bool parallel;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParMesh * pmesh = nullptr;
|
||||
@@ -270,8 +267,6 @@ public:
|
||||
void ResetFEM();
|
||||
void SetupFEM();
|
||||
|
||||
void UpdateEssentialTDofs();
|
||||
void AssembleDiffusionBilinear(bool update_ess_tdofs=true);
|
||||
void Solve();
|
||||
GridFunction * GetFEMSolution();
|
||||
LinearForm * GetLinearForm() {return b;}
|
||||
@@ -376,130 +371,6 @@ public:
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* using the Illinois method
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param alpha_grad alpha multiplied by gradient
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Illinois iteration tolerance
|
||||
* @param max_its Illinois maximum iteration number
|
||||
* @return real_t Final volume (∫_Ω sigmoid(ψ) dx)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, GridFunction &alpha_grad, real_t target_volume,
|
||||
real_t tol = 1e-12, int max_its = 100)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
FiniteElementSpace *fes = psi.FESpace();
|
||||
ParFiniteElementSpace *pfes = dynamic_cast<ParFiniteElementSpace*>(fes);
|
||||
#endif
|
||||
ConstantCoefficient zero_cf(0.0);
|
||||
real_t a = -alpha_grad.ComputeMaxError(zero_cf);
|
||||
real_t b = -a;
|
||||
real_t y = 0.0;
|
||||
|
||||
MappedGridFunctionCoefficient sigmoid_psi(
|
||||
&psi, [&y](const real_t x) { return sigmoid(x + y); });
|
||||
std::unique_ptr<LinearForm> int_sigmoid_psi;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction *par_psi = dynamic_cast<ParGridFunction *>(&psi);
|
||||
if (par_psi)
|
||||
{
|
||||
int_sigmoid_psi.reset(new ParLinearForm(par_psi->ParFESpace()));
|
||||
}
|
||||
else
|
||||
{
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
}
|
||||
#else
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
#endif
|
||||
int_sigmoid_psi->AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
|
||||
y = a;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_a = int_sigmoid_psi->Sum(); // f_a := f(a) + θ vol(Ω)
|
||||
|
||||
y = b;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_b = int_sigmoid_psi->Sum(); // f_b := f(b) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_a, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_b, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_a -= target_volume; // f_a := f(a)
|
||||
f_b -= target_volume; // f_b := f(b)
|
||||
real_t c = 0.0;
|
||||
real_t f_c = 0.0;
|
||||
int side = 0;
|
||||
|
||||
bool done = false;
|
||||
for (int k=0; k < max_its; k++)
|
||||
{
|
||||
c = (f_a * b - f_b * a) / (f_a - f_b);
|
||||
|
||||
if (abs(b - a) < tol * abs(b + a)) { done = true; break; }
|
||||
|
||||
y = c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
f_c = int_sigmoid_psi->Sum(); // f_c := f(c) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_c, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_c -= target_volume; // f_c := f(c)
|
||||
|
||||
if (f_c * f_b > 0)
|
||||
{
|
||||
b = c;
|
||||
f_b = f_c;
|
||||
if (side == -1) { f_a /= 2.0; }
|
||||
side = -1;
|
||||
}
|
||||
else if (f_c * f_a > 0)
|
||||
{
|
||||
a = c;
|
||||
f_a = f_c;
|
||||
if (side == 1) { f_b /= 2.0; }
|
||||
side = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
done = true; break;
|
||||
}
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
y = 0.0;
|
||||
psi += c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t material_volume = int_sigmoid_psi->Sum();
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
// Poisson solver
|
||||
|
||||
@@ -551,8 +422,12 @@ void DiffusionSolver::SetupFEM()
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionSolver::UpdateEssentialTDofs()
|
||||
void DiffusionSolver::Solve()
|
||||
{
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
@@ -565,39 +440,7 @@ void DiffusionSolver::UpdateEssentialTDofs()
|
||||
#else
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
#endif
|
||||
}
|
||||
|
||||
void DiffusionSolver::AssembleDiffusionBilinear(bool update_ess_tdofs)
|
||||
{
|
||||
if (update_ess_tdofs)
|
||||
{
|
||||
UpdateEssentialTDofs();
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
a->FormSystemMatrix(ess_tdof_list, A);
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
{
|
||||
Vector B, X;
|
||||
|
||||
*u=0.0;
|
||||
if (b)
|
||||
{
|
||||
delete b;
|
||||
@@ -632,33 +475,31 @@ void DiffusionSolver::Solve()
|
||||
|
||||
b->Assemble();
|
||||
|
||||
*u=0.0;
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
BilinearForm * a = nullptr;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
X.SetSize(pfes->TrueVSize());
|
||||
B.SetSize(pfes->TrueVSize());
|
||||
dynamic_cast<ParGridFunction*>(u)->ParallelAssemble(X);
|
||||
dynamic_cast<ParLinearForm*>(b)->ParallelAssemble(B);
|
||||
dynamic_cast<ParBilinearForm*>(a)->ParallelEliminateTDofsInRHS(
|
||||
ess_tdof_list, X, B);
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
|
||||
|
||||
CGSolver * cg = nullptr;
|
||||
Solver * M = nullptr;
|
||||
@@ -687,6 +528,7 @@ void DiffusionSolver::Solve()
|
||||
delete M;
|
||||
delete cg;
|
||||
a->RecoverFEMSolution(X, *b, *u);
|
||||
delete a;
|
||||
}
|
||||
|
||||
GridFunction * DiffusionSolver::GetFEMSolution()
|
||||
@@ -718,8 +560,6 @@ DiffusionSolver::~DiffusionSolver()
|
||||
#endif
|
||||
delete fec; fec = nullptr;
|
||||
delete b;
|
||||
A.Clear();
|
||||
delete a;
|
||||
}
|
||||
|
||||
|
||||
|
||||
+60
-11
@@ -4,8 +4,8 @@
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex37p -alpha 10 -pv
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1 -growth 1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -54,6 +54,61 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
real_t f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
f -= target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
real_t df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
real_t material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -138,11 +193,10 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-2;
|
||||
real_t itol = 1e-1;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -157,8 +211,6 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -307,7 +359,6 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
ParBilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -361,7 +412,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -401,9 +452,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
ParGridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
@@ -76,4 +76,4 @@ clean-build:
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh sol.gf mesh.* sol.*
|
||||
@rm -f refined.mesh sol.gf
|
||||
|
||||
+2
-7
@@ -71,7 +71,6 @@ endif
|
||||
|
||||
SUBDIRS_ALL = $(addsuffix /all,$(SUBDIRS))
|
||||
SUBDIRS_TEST = $(addsuffix /test,$(SUBDIRS))
|
||||
SUBDIRS_TEST_NOCLEAN = $(addsuffix /test-noclean,$(SUBDIRS))
|
||||
SUBDIRS_CLEAN = $(addsuffix /clean,$(SUBDIRS))
|
||||
SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
|
||||
|
||||
@@ -88,9 +87,8 @@ SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
|
||||
|
||||
all: $(EXAMPLES) $(SUBDIRS_ALL)
|
||||
|
||||
.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_TEST_NOCLEAN) \
|
||||
$(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
|
||||
$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_TEST_NOCLEAN) $(SUBDIRS_CLEAN):
|
||||
.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
|
||||
$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN):
|
||||
$(MAKE) -C $(@D) $(@F)
|
||||
$(SUBDIRS_TPRINT):
|
||||
@$(MAKE) -C $(@D) $(@F)
|
||||
@@ -109,7 +107,6 @@ endif
|
||||
MFEM_TESTS = EXAMPLES
|
||||
include $(MFEM_TEST_MK)
|
||||
test: $(SUBDIRS_TEST)
|
||||
test-noclean: $(SUBDIRS_TEST_NOCLEAN)
|
||||
test-print: $(SUBDIRS_TPRINT)
|
||||
|
||||
# Testing: Parallel vs. serial runs
|
||||
@@ -160,8 +157,6 @@ ex37-test-seq: ex37
|
||||
@$(call mfem-test,$<,, Serial example,-mi 3)
|
||||
ex37p-test-par: ex37p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
|
||||
ex39-test-seq: ex39
|
||||
@$(call mfem-test,$<,, Serial example,-m ../data/compass.mesh)
|
||||
ex41-test-seq: ex41
|
||||
@$(call mfem-test,$<,, Serial example,-tf 1.0)
|
||||
ex41p-test-par: ex41p
|
||||
|
||||
+1
-14
@@ -57,8 +57,6 @@ set(SRCS
|
||||
integ/lininteg_domain_grad.cpp
|
||||
integ/lininteg_domain_vectorfe.cpp
|
||||
integ/nonlininteg_vecconvection_pa.cpp
|
||||
integ/nonlininteg_vecconvection_pa_diag.cpp
|
||||
integ/nonlininteg_vecconvection_pa_grad.cpp
|
||||
integ/nonlininteg_vecconvection_mf.cpp
|
||||
coefficient.cpp
|
||||
complex_fem.cpp
|
||||
@@ -135,7 +133,7 @@ set(SRCS
|
||||
tmop/assemble/diag2.cpp
|
||||
tmop/assemble/grad2_limit.cpp
|
||||
tmop/assemble/grad2.cpp
|
||||
tmop/assemble/diag3_limit.cpp
|
||||
tmop/assemble/diag3_limit.cpp
|
||||
tmop/assemble/diag3.cpp
|
||||
tmop/assemble/grad3_limit.cpp
|
||||
tmop/assemble/grad3.cpp
|
||||
@@ -173,12 +171,8 @@ set(SRCS
|
||||
tmop_tools.cpp
|
||||
tmop_amr.cpp
|
||||
gslib.cpp
|
||||
gslib/findptsedge_local_2.cpp
|
||||
gslib/findptsedge_local_3.cpp
|
||||
gslib/findptssurf_local_3.cpp
|
||||
gslib/findpts_local_2.cpp
|
||||
gslib/findpts_local_3.cpp
|
||||
gslib/interpolate_local_1.cpp
|
||||
gslib/interpolate_local_2.cpp
|
||||
gslib/interpolate_local_3.cpp
|
||||
transfer.cpp
|
||||
@@ -197,20 +191,14 @@ set(HDRS
|
||||
integ/bilininteg_dgtrace_kernels.hpp
|
||||
integ/bilininteg_vecdiffusion_kernels.hpp
|
||||
integ/bilininteg_convection_kernels.hpp
|
||||
integ/bilininteg_diffusion_pa_simplices.hpp
|
||||
integ/bilininteg_diffusion_kernels.hpp
|
||||
integ/bilininteg_elasticity_kernels.hpp
|
||||
integ/bilininteg_hcurl_kernels.hpp
|
||||
integ/bilininteg_hdiv_kernels.hpp
|
||||
integ/bilininteg_hcurlhdiv_kernels.hpp
|
||||
integ/bilininteg_mass_kernels.hpp
|
||||
integ/bilininteg_mass_pa_simplices.hpp
|
||||
integ/bilininteg_vecdiffusion_pa.hpp
|
||||
integ/bilininteg_vecdiv_pa.hpp
|
||||
integ/bilininteg_vecmass_pa.hpp
|
||||
integ/nonlininteg_vecconvection_pa.hpp
|
||||
integ/nonlininteg_vecconvection_pa_diag.hpp
|
||||
integ/nonlininteg_vecconvection_pa_grad.hpp
|
||||
coefficient.hpp
|
||||
complex_fem.hpp
|
||||
convergence.hpp
|
||||
@@ -317,7 +305,6 @@ set(HDRS
|
||||
tmop_tools.hpp
|
||||
tmop_amr.hpp
|
||||
gslib.hpp
|
||||
gslib/gslib_kernel_helpers.hpp
|
||||
transfer.hpp
|
||||
hyperbolic.hpp
|
||||
integrator.hpp
|
||||
|
||||
+3
-32
@@ -729,8 +729,7 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
tr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
fe1 = fes -> GetFE (tr -> Elem1No);
|
||||
// The fe2 object is really a dummy and not used on the boundaries,
|
||||
// but we can't dereference a NULL pointer, and we don't want to
|
||||
@@ -744,7 +743,6 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
|
||||
boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
|
||||
elemmat);
|
||||
doftrans.TransformDual(elemmat);
|
||||
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
@@ -1255,31 +1253,6 @@ void BilinearForm::Mult(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::AddMult(const Vector &x, Vector &y, const real_t a) const
|
||||
{
|
||||
if (ext)
|
||||
{
|
||||
ext->AddMult(x, y, a);
|
||||
}
|
||||
else
|
||||
{
|
||||
mat->AddMult(x, y, a);
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::AddMultTranspose(const Vector &x, Vector &y,
|
||||
const real_t a) const
|
||||
{
|
||||
if (ext)
|
||||
{
|
||||
ext->AddMultTranspose(x, y, a);
|
||||
}
|
||||
else
|
||||
{
|
||||
mat->AddMultTranspose(x, y, a);
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::MultTranspose(const Vector & x, Vector & y) const
|
||||
{
|
||||
if (ext)
|
||||
@@ -1750,7 +1723,6 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
}
|
||||
}
|
||||
|
||||
DofTransformation dom_dof_trans, ran_dof_trans;
|
||||
for (int i = 0; i < trial_fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
@@ -1759,8 +1731,8 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
ftr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (ftr != NULL)
|
||||
{
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs, dom_dof_trans);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs, ran_dof_trans);
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
|
||||
trial_fe1 = trial_fes->GetFE(ftr->Elem1No);
|
||||
test_fe1 = test_fes->GetFE(ftr->Elem1No);
|
||||
// The test_fe2 object is really a dummy and not used on the
|
||||
@@ -1776,7 +1748,6 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
boundary_face_integs[k]->AssembleFaceMatrix(*trial_fe1, *test_fe1, *trial_fe2,
|
||||
*test_fe2,
|
||||
*ftr, elemmat);
|
||||
TransformDual(ran_dof_trans, dom_dof_trans, elemmat);
|
||||
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -307,8 +307,8 @@ public:
|
||||
{ mat->Mult(x, y); mat_e->AddMult(x, y); }
|
||||
|
||||
/// Add the matrix vector multiple to a vector: $ y += a M x $
|
||||
void AddMult(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const override;
|
||||
void AddMult(const Vector &x, Vector &y, const real_t a = 1.0) const override
|
||||
{ mat -> AddMult (x, y, a); }
|
||||
|
||||
/** @brief Add the original uneliminated matrix vector multiple to a vector.
|
||||
The original matrix is $ M + Me $ so we have:
|
||||
@@ -318,7 +318,8 @@ public:
|
||||
|
||||
/// Add the matrix transpose vector multiplication: $ y += a M^T x $
|
||||
void AddMultTranspose(const Vector & x, Vector & y,
|
||||
const real_t a = 1.0) const override;
|
||||
const real_t a = 1.0) const override
|
||||
{ mat->AddMultTranspose(x, y, a); }
|
||||
|
||||
/** @brief Add the original uneliminated matrix transpose vector
|
||||
multiple to a vector. The original matrix is $ M + M_e $
|
||||
|
||||
@@ -1997,11 +1997,7 @@ void PADiscreteLinearOperatorExtension::Assemble()
|
||||
}
|
||||
else
|
||||
{
|
||||
const L2ElementRestriction* l2_elem_restrict =
|
||||
dynamic_cast<const L2ElementRestriction*>(elem_restrict_test);
|
||||
MFEM_VERIFY(l2_elem_restrict,
|
||||
"A real ElementRestriction is required in this setting!");
|
||||
test_multiplicity = 1.0;
|
||||
mfem_error("A real ElementRestriction is required in this setting!");
|
||||
}
|
||||
|
||||
auto tm = test_multiplicity.ReadWrite();
|
||||
@@ -2040,13 +2036,7 @@ void PADiscreteLinearOperatorExtension::AddMult(
|
||||
}
|
||||
else
|
||||
{
|
||||
const L2ElementRestriction* l2_elem_restrict =
|
||||
dynamic_cast<const L2ElementRestriction*>(elem_restrict_test);
|
||||
MFEM_VERIFY(l2_elem_restrict,
|
||||
"In this setting you need a real ElementRestriction!");
|
||||
tempY.SetSize(y.Size());
|
||||
l2_elem_restrict->MultTranspose(localTest, tempY);
|
||||
y += tempY;
|
||||
mfem_error("In this setting you need a real ElementRestriction!");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+4
-22
@@ -1345,8 +1345,7 @@ real_t DiffusionIntegrator::ComputeFluxEnergy
|
||||
}
|
||||
|
||||
const IntegrationRule &DiffusionIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe, const FiniteElement &test_fe,
|
||||
const bool stroud)
|
||||
const FiniteElement &trial_fe, const FiniteElement &test_fe)
|
||||
{
|
||||
int order;
|
||||
if (trial_fe.Space() == FunctionSpace::Pk)
|
||||
@@ -1363,15 +1362,7 @@ const IntegrationRule &DiffusionIntegrator::GetRule(
|
||||
{
|
||||
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
if (stroud)
|
||||
{
|
||||
return StroudIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
MassIntegrator::MassIntegrator(const IntegrationRule *ir)
|
||||
@@ -1458,8 +1449,7 @@ void MassIntegrator::AssembleElementMatrix2(
|
||||
|
||||
const IntegrationRule &MassIntegrator::GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
const ElementTransformation &Trans,
|
||||
const bool stroud)
|
||||
const ElementTransformation &Trans)
|
||||
{
|
||||
// int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
const int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderW();
|
||||
@@ -1468,15 +1458,7 @@ const IntegrationRule &MassIntegrator::GetRule(const FiniteElement &trial_fe,
|
||||
{
|
||||
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
if (stroud)
|
||||
{
|
||||
return StroudIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
|
||||
|
||||
+335
-535
File diff suppressed because it is too large
Load Diff
+28
-67
@@ -39,8 +39,8 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
b_type = b_type_i;
|
||||
cp_type = cp_type_i;
|
||||
tol = tol_i;
|
||||
lbound.SetSize(ncp, nb);
|
||||
ubound.SetSize(ncp, nb);
|
||||
lbound.SetSize(nb, ncp);
|
||||
ubound.SetSize(nb, ncp);
|
||||
nodes.SetSize(nb);
|
||||
weights.SetSize(nb);
|
||||
control_points.SetSize(ncp);
|
||||
@@ -125,25 +125,21 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
{
|
||||
if (j == 0)
|
||||
{
|
||||
lbound(j,i) = bv(i);
|
||||
ubound(j,i) = bv(i);
|
||||
lbound(i, j) = bv(i);
|
||||
ubound(i, j) = bv(i);
|
||||
}
|
||||
else if (j == ncp-1)
|
||||
{
|
||||
lbound(j,i) = bv(i);
|
||||
ubound(j,i) = bv(i);
|
||||
lbound(i, j) = bv(i);
|
||||
ubound(i, j) = bv(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
vals(0) = bv(i);
|
||||
vals(1) = bmv(i) + dm*bdmv(i);
|
||||
vals(2) = bpv(i) + dp*bdpv(i);
|
||||
lbound(j,i) = vals.Min()-tol; // tolerance for good measure
|
||||
ubound(j,i) = vals.Max()+tol; // tolerance for good measure
|
||||
if (b_type == 2)
|
||||
{
|
||||
lbound(j,i) = std::max(lbound(j,i),0_r);
|
||||
}
|
||||
lbound(i, j) = vals.Min()-tol; // tolerance for good measure
|
||||
ubound(i, j) = vals.Max()+tol; // tolerance for good measure
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -277,7 +273,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
|
||||
intmax.SetSize(ncp);
|
||||
intmin = 0.0;
|
||||
intmax = 0.0;
|
||||
Vector coeffm;
|
||||
Vector coeffm(nb);
|
||||
coeffm = 0.0;
|
||||
|
||||
real_t a0 = 0.0;
|
||||
real_t a1 = 0.0;
|
||||
@@ -305,8 +302,6 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
|
||||
// compute L2 projection for linear bases: a0 + a1*x
|
||||
if (proj)
|
||||
{
|
||||
coeffm.SetSize(nb);
|
||||
coeffm = 0.0;
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes_int(i)-1;
|
||||
@@ -347,8 +342,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
|
||||
real_t c = coeffm(i);
|
||||
for (int j = 0; j < ncp; j++)
|
||||
{
|
||||
intmin(j) += min(lbound(j,i)*c, ubound(j,i)*c);
|
||||
intmax(j) += max(lbound(j,i)*c, ubound(j,i)*c);
|
||||
intmin(j) += min(lbound(i,j)*c, ubound(i,j)*c);
|
||||
intmax(j) += max(lbound(i,j)*c, ubound(i,j)*c);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -479,10 +474,10 @@ void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
|
||||
real_t w1 = intmaxT(id2++);
|
||||
for (int k = 0; k < ncp; k++) // kth row
|
||||
{
|
||||
vals(0) = w0*lbound(k,j);
|
||||
vals(1) = w0*ubound(k,j);
|
||||
vals(2) = w1*lbound(k,j);
|
||||
vals(3) = w1*ubound(k,j);
|
||||
vals(0) = w0*lbound(j,k);
|
||||
vals(1) = w0*ubound(j,k);
|
||||
vals(2) = w1*lbound(j,k);
|
||||
vals(3) = w1*ubound(j,k);
|
||||
intmin(k*ncp+i) += vals.Min();
|
||||
intmax(k*ncp+i) += vals.Max();
|
||||
}
|
||||
@@ -558,17 +553,17 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes(i)-1; // x-coordinate
|
||||
minNodalVals(i) -= a0V(j) + a1V(j)*x;
|
||||
maxNodalVals(i) -= a0V(j) + a1V(j)*x;
|
||||
minBounds(i) -= a0V(j) + a1V(j)*x;
|
||||
maxBounds(i) -= a0V(j) + a1V(j)*x;
|
||||
}
|
||||
// Compute Bernstein coefficients
|
||||
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
|
||||
lu.Solve(nb, 1, minNodalVals.GetData());
|
||||
lu.Solve(nb, 1, maxNodalVals.GetData());
|
||||
lu.Solve(nb, 1, minBounds.GetData());
|
||||
lu.Solve(nb, 1, maxBounds.GetData());
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
intminT(i*ncp2+j) = minNodalVals(i);
|
||||
intmaxT(i*ncp2+j) = maxNodalVals(i);
|
||||
intminT(i*ncp2+j) = minBounds(i);
|
||||
intmaxT(i*ncp2+j) = maxBounds(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -622,10 +617,10 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
|
||||
real_t w1 = intmaxT(id2++);
|
||||
for (int k = 0; k < ncp; k++) // kth slice
|
||||
{
|
||||
vals(0) = w0*lbound(k,j);
|
||||
vals(1) = w0*ubound(k,j);
|
||||
vals(2) = w1*lbound(k,j);
|
||||
vals(3) = w1*ubound(k,j);
|
||||
vals(0) = w0*lbound(j,k);
|
||||
vals(1) = w0*ubound(j,k);
|
||||
vals(2) = w1*lbound(j,k);
|
||||
vals(3) = w1*ubound(j,k);
|
||||
intmin(k*ncp2+i) += vals.Min();
|
||||
intmax(k*ncp2+i) += vals.Max();
|
||||
}
|
||||
@@ -658,8 +653,7 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
|
||||
Vector &nodesBern) const
|
||||
{
|
||||
const int nbern = nodesBern.Size();
|
||||
L2_SegmentElement el(nbern-1, 2);
|
||||
// we use L2 to leverage lexicographic order
|
||||
L2_SegmentElement el(nbern-1, 2); // we use L2 to leverage lexicographic order
|
||||
Array<int> ordering = el.GetLexicographicOrdering();
|
||||
basisMat.SetSize(nbern, nbern);
|
||||
Vector shape(nbern);
|
||||
@@ -672,39 +666,6 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
|
||||
}
|
||||
}
|
||||
|
||||
DenseMatrix PLBound::GetBoundingMatrix(int dim, bool is_lower) const
|
||||
{
|
||||
if (dim > 1)
|
||||
{
|
||||
const int ncpd = static_cast<int>(std::pow(ncp, dim));
|
||||
const int nbd = static_cast<int>(std::pow(nb, dim));
|
||||
DenseMatrix boundND(ncpd, nbd);
|
||||
Vector phimin, phimax, col;
|
||||
Vector coeffs(nbd);
|
||||
coeffs = 0.0;
|
||||
for (int j = 0; j < nbd; j++)
|
||||
{
|
||||
coeffs(j) = 1.0;
|
||||
boundND.GetColumnReference(j, col);
|
||||
GetNDBounds(dim, coeffs, phimin, phimax);
|
||||
col = is_lower ? phimin : phimax;
|
||||
coeffs(j) = 0.0;
|
||||
}
|
||||
return boundND;
|
||||
}
|
||||
return is_lower ? lbound : ubound;
|
||||
}
|
||||
|
||||
DenseMatrix PLBound::GetLowerBoundMatrix(int dim) const
|
||||
{
|
||||
return GetBoundingMatrix(dim, true);
|
||||
}
|
||||
|
||||
DenseMatrix PLBound::GetUpperBoundMatrix(int dim) const
|
||||
{
|
||||
return GetBoundingMatrix(dim, false);
|
||||
}
|
||||
|
||||
constexpr int PLBound::min_ncp_gl_x[2][11];
|
||||
constexpr int PLBound::min_ncp_gll_x[2][11];
|
||||
constexpr int PLBound::min_ncp_pos_x[2][11];
|
||||
@@ -755,4 +716,4 @@ void PLBound::Print(std::ostream &outp) const
|
||||
ubound.Print(outp);
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
+20
-71
@@ -19,18 +19,14 @@ namespace mfem
|
||||
{
|
||||
|
||||
/** @name Piecewise linear bounds of bases
|
||||
\brief Piecewise linear bounds of bases can be used to compute bounds on
|
||||
the grid function in each element. The bounds for the bases are constructed
|
||||
based on the following parameters:
|
||||
\brief Piecewise linear bounds of bases can be used to compute bounds on the grid function in each element. The bounds for the bases are constructed based on the following parameters:
|
||||
|
||||
(i) @b nb: number of bases/nodes in 1D (i.e. polynomial order+1),
|
||||
|
||||
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre
|
||||
nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
|
||||
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
|
||||
2 - Positive/Bernstein bases on uniformly distributed nodes,
|
||||
|
||||
(iii) @b ncp: number of control points used to construct the piecewise
|
||||
linear bounds
|
||||
(iii) @b ncp: number of control points used to construct the piecewise linear bounds
|
||||
|
||||
(iv) @b cp_type: control point distribution. 0 - GL + end-points,
|
||||
1 - Chebyshev.
|
||||
@@ -39,9 +35,7 @@ namespace mfem
|
||||
|
||||
If the user does not specify @b ncp and @b cp_type, the minimum value of
|
||||
@b ncp is used that would bound the bases for the @b cp_type. We default
|
||||
to @b cp_type = 0 as it requires fewer number of points to bound the bases.
|
||||
Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and
|
||||
increasing @b ncp results in tighter bounds.
|
||||
to @b cp_type = 0 as it requires fewer number of points to bound the bases. Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and increasing @b ncp results in tighter bounds.
|
||||
|
||||
Finally, only tensor-product elements are currently supported.
|
||||
|
||||
@@ -60,7 +54,7 @@ private:
|
||||
bool proj = true; // Use linear projection to compute bounds.
|
||||
real_t tol = 0.0; // offset bounds to avoid round-off errors
|
||||
Vector nodes, weights, control_points;
|
||||
DenseMatrix lbound, ubound; // ncp x nb matrices with bounds of all bases
|
||||
DenseMatrix lbound, ubound; // nb x ncp matrices with bounds of all bases
|
||||
// Some auxillary storage for computing the bounds with Bernstein
|
||||
DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
|
||||
DenseMatrix basisMatInt; // Bernstein bases at GLL nodes
|
||||
@@ -86,9 +80,6 @@ private:
|
||||
{3,5,8,9,11,12,13,13,14,15,16}
|
||||
};
|
||||
|
||||
/// Helper function to extract lower or upper bounding matrix
|
||||
DenseMatrix GetBoundingMatrix(int dim, bool is_lower) const;
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PLBound(const int nb_i, const int ncp_i, const int b_type_i,
|
||||
@@ -101,82 +92,40 @@ public:
|
||||
PLBound(const FiniteElementSpace *fes,
|
||||
const int ncp_i = -1, const int cp_type_i = 0);
|
||||
|
||||
/// Get minimum number of control points needed to bound the given bases
|
||||
// Get minimum number of control points needed to bound the given bases
|
||||
int GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
|
||||
int cp_type_i) const;
|
||||
|
||||
/// Print information about the bounds
|
||||
// Print information about the bounds
|
||||
void Print(std::ostream &outp = mfem::out) const;
|
||||
|
||||
/** @brief Enable (default) or disable linear projection before bounding.
|
||||
*
|
||||
* @details This projection increases the computational cost but results in
|
||||
* tighter bounds.
|
||||
*/
|
||||
// Enable (default) or disable linear projection before bounding.
|
||||
// This projection increases the computational cost but results in tighter
|
||||
// bounds.
|
||||
void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
|
||||
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 1D/2D/3D.
|
||||
*
|
||||
* @param[in] rdim The spatial dimension of the element (1, 2, or 3).
|
||||
* @param[in] coeff The vector of lexicographically-ordered coefficients.
|
||||
* Should be of size nb^rdim, where nb is the number of
|
||||
* bases/nodes in 1D. These coefficients must correspond
|
||||
* to the bases type and number of bases, used in the
|
||||
* constructor of PLBound.
|
||||
*
|
||||
* @param[out] intmin The vector of minimum bound for all control points.
|
||||
* @param[out] intmax The vector of maximum bound for all control points.
|
||||
* Both intmin and intmax are of size ncp^rdim, where
|
||||
* ncp is the number of control points in 1D, and are
|
||||
* ordered lexicographically.
|
||||
*/
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 1D/2D/3D.
|
||||
void GetNDBounds(const int rdim, const Vector &coeff,
|
||||
Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Get number of control points used to compute the bounds.
|
||||
int GetNControlPoints() const { return ncp; }
|
||||
|
||||
/// Get 1D control point locations (lexicographic order) in [0,1].
|
||||
const Vector &GetControlPoints() const { return control_points; }
|
||||
|
||||
/** @brief Get lower and upper bounding matrix (ncp^dim x nb^dim)
|
||||
*
|
||||
* @details The matrices can be used to compute the bounds at control points
|
||||
* by a simple matrix-vector product with the
|
||||
* lexicographically-ordered nodal coefficients.
|
||||
* The resulting output is also lexicographically-ordered.
|
||||
*
|
||||
* @note These matrices do not account for the linear projection step that
|
||||
* is optionally done in GetNDBounds before bounding the function.
|
||||
*/
|
||||
///@{
|
||||
DenseMatrix GetLowerBoundMatrix(int dim = 1) const;
|
||||
DenseMatrix GetUpperBoundMatrix(int dim = 1) const;
|
||||
///@}
|
||||
|
||||
private:
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 1D.
|
||||
* See GetNDBounds for details of the input and output parameters.
|
||||
*/
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 1D.
|
||||
void Get1DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 2D.
|
||||
* See GetNDBounds for details of the input and output parameters.
|
||||
*/
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 2D.
|
||||
void Get2DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 3D.
|
||||
* See GetNDBounds for details of the input and output parameters.
|
||||
*/
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 3D.
|
||||
void Get3DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/** @brief Setup matrix used to compute values at given 1D locations in [0,1]
|
||||
* for Bernstein bases.
|
||||
*/
|
||||
/// Setup matrix used to compute values at given 1D locations in [0,1]
|
||||
/// for Bernstein bases.
|
||||
void SetupBernsteinBasisMat(DenseMatrix &basisMat, Vector &nodesBern) const;
|
||||
|
||||
void Setup(const int nb_i, const int ncp_i, const int b_type_i,
|
||||
|
||||
@@ -54,8 +54,6 @@ void Coefficient::Project(QuadratureFunction &qf)
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
Vector values;
|
||||
// GetValues makes a reference, but we need it to be valid on Host
|
||||
qf.HostWrite();
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
@@ -329,8 +327,6 @@ void VectorCoefficient::Project(QuadratureFunction &qf)
|
||||
const int ne = qspace.GetNE();
|
||||
DenseMatrix values;
|
||||
Vector col;
|
||||
// GetValues makes a reference, but we need it to be valid on Host
|
||||
qf.HostWrite();
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
@@ -699,8 +695,6 @@ void MatrixCoefficient::Project(QuadratureFunction &qf, bool transpose)
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
DenseMatrix values, matrix;
|
||||
// GetValues makes a reference, but we need it to be valid on Host
|
||||
qf.HostWrite();
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
|
||||
+1
-8
@@ -52,9 +52,6 @@ public:
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/// Returns dimension of the vector.
|
||||
int GetVDim() { return 1; }
|
||||
|
||||
/** @brief Evaluate the coefficient in the element described by @a T at the
|
||||
point @a ip. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
@@ -1055,8 +1052,7 @@ public:
|
||||
|
||||
typedef VectorCoefficient DiagonalMatrixCoefficient;
|
||||
|
||||
/** Base class for matrix-valued coefficients that optionally depend on time
|
||||
and space. */
|
||||
/// Base class for Matrix Coefficients that optionally depend on time and space.
|
||||
class MatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
@@ -1103,9 +1099,6 @@ public:
|
||||
/// the quadrature points. The matrix will be transposed or not according to
|
||||
/// the boolean argument @a transpose.
|
||||
///
|
||||
/// The stored entries use the same row/column convention as `Eval()`,
|
||||
/// unless `transpose == true`, in which case `K^T` is stored instead.
|
||||
///
|
||||
/// The @a vdim of the QuadratureFunction should be equal to the height times
|
||||
/// the width of the matrix.
|
||||
virtual void Project(QuadratureFunction &qf, bool transpose=false);
|
||||
|
||||
+164
-1049
File diff suppressed because it is too large
Load Diff
@@ -82,25 +82,6 @@ public:
|
||||
/// underlying #fes
|
||||
int VectorDim() const;
|
||||
|
||||
/// Copy assignment. Only the data of the base class Vector is copied.
|
||||
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
|
||||
have the same size.
|
||||
|
||||
@note Defining this method overwrites the implicitly defined copy
|
||||
assignment operator. */
|
||||
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
|
||||
{ return operator=((const Vector &)rhs); }
|
||||
|
||||
/// Copy the data from @a v.
|
||||
/** The size of @a v must be equal to double of the size of the associated
|
||||
FiniteElementSpace #fes. */
|
||||
ComplexGridFunction &operator=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
|
||||
Vector::operator=(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
/// Assign constant values to the ComplexGridFunction data.
|
||||
ComplexGridFunction &operator=(const std::complex<real_t> & value)
|
||||
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
|
||||
@@ -166,75 +147,6 @@ public:
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
/// @brief Returns Max|u_ex - u_h| error for complex-valued H1 or L2 elements
|
||||
///
|
||||
/// Compute the $L_\infty$ error across the entire domain.
|
||||
///
|
||||
/// @param[in] exsolr Coefficient object reproducing the real part of the
|
||||
/// anticipated values of the scalar field, Re(u_ex).
|
||||
/// @param[in] exsoli Coefficient object reproducing the imaginary part of
|
||||
/// the anticipated values of the scalar field, Im(u_ex).
|
||||
/// @param[in] irs Optional pointer to an array of custom integration
|
||||
/// rules e.g. higher order than the default rules. If
|
||||
/// present the array will be indexed by
|
||||
/// Geometry::Type.
|
||||
///
|
||||
/// @note Uses ComputeLpError internally. See the ComputeLpError
|
||||
/// documentation for generalizations of this error computation.
|
||||
///
|
||||
/// @note If an array of integration rules is provided through @a irs, be
|
||||
/// sure to include valid rules for each element type that may occur
|
||||
/// in the list of elements.
|
||||
///
|
||||
virtual real_t ComputeMaxError(Coefficient &exsolr,
|
||||
Coefficient &exsoli,
|
||||
const IntegrationRule *irs[] = NULL) const
|
||||
{
|
||||
return ComputeLpError(infinity(), exsolr, exsoli, NULL, irs);
|
||||
}
|
||||
|
||||
/// @brief Returns ||u_ex - u_h||_Lp for complex-valued H1 or L2 elements
|
||||
///
|
||||
/// Computes:
|
||||
/// $$(\sum_{elems} \int_{elem} w \, |u_{ex} - u_h|^p)^{1/p}$$
|
||||
/// Where:
|
||||
/// $$|u_{ex} - u_h| = \sqrt{Re(u_{ex} - u_h)^2 + Im(u_{ex} - u_h)^2}$$
|
||||
///
|
||||
/// @param[in] p Real value indicating the exponent of the $L^p$ norm.
|
||||
/// To avoid domain errors p should have a positive value,
|
||||
/// either finite or infinite.
|
||||
/// @param[in] exsolr Coefficient object reproducing the real part of the
|
||||
/// anticipated values of the scalar field, Re(u_ex).
|
||||
/// @param[in] exsoli Coefficient object reproducing the imaginary part of
|
||||
/// the anticipated values of the scalar field, Im(u_ex).
|
||||
/// @param[in] weight Optional pointer to a Coefficient object reproducing
|
||||
/// a weighting function, w.
|
||||
/// @param[in] irs Optional pointer to an array of custom integration
|
||||
/// rules e.g. higher order than the default rules. If
|
||||
/// present the array will be indexed by Geometry::Type.
|
||||
/// @param[in] elems Optional pointer to a marker array, with a length
|
||||
/// equal to the number of local elements, indicating
|
||||
/// which elements to integrate over. Only those elements
|
||||
/// corresponding to non-zero entries in @a elems will
|
||||
/// contribute to the computed L2 error.
|
||||
///
|
||||
/// @note If an array of integration rules is provided through @a irs, be
|
||||
/// sure to include valid rules for each element type that may occur
|
||||
/// in the list of elements.
|
||||
///
|
||||
/// @note Quadratures with negative weights (as in some simplex integration
|
||||
/// rules in MFEM) can produce negative integrals even with
|
||||
/// non-negative integrands. To avoid returning negative errors this
|
||||
/// function uses the absolute values of the element-wise integrals.
|
||||
/// This may lead to results which are not entirely consistent with
|
||||
/// such integration rules.
|
||||
virtual real_t ComputeLpError(const real_t p,
|
||||
Coefficient &exsolr,
|
||||
Coefficient &exsoli,
|
||||
Coefficient *weight = NULL,
|
||||
const IntegrationRule *irs[] = NULL,
|
||||
const Array<int> *elems = NULL) const;
|
||||
|
||||
/// Save the ComplexGridFunction to an output stream.
|
||||
virtual void Save(std::ostream &out) const;
|
||||
|
||||
@@ -392,9 +304,6 @@ private:
|
||||
bool RealInteg();
|
||||
bool ImagInteg();
|
||||
|
||||
void BuildComplexOperator(OperatorHandle &A_r, OperatorHandle &A_i,
|
||||
OperatorHandle &A) const;
|
||||
|
||||
public:
|
||||
SesquilinearForm(FiniteElementSpace *fes,
|
||||
ComplexOperator::Convention
|
||||
@@ -508,186 +417,6 @@ public:
|
||||
virtual ~SesquilinearForm();
|
||||
};
|
||||
|
||||
/** Class for a mixed sesquilinear form
|
||||
|
||||
A mixed sesquilinear form is a generalization of a mixed bilinear form to
|
||||
complex-valued fields. Mixed sesquilinear forms are linear in the second
|
||||
argument but the first argument involves a complex conjugate in the sense
|
||||
that:
|
||||
|
||||
a(alpha u, beta v) = conj(alpha) beta a(u, v)
|
||||
|
||||
The @a convention argument in the class's constructor is documented in the
|
||||
mfem::ComplexOperator class found in linalg/complex_operator.hpp.
|
||||
|
||||
When supplying integrators to the MixedSesquilinearForm either the real or
|
||||
imaginary integrator can be NULL. This indicates that the corresponding
|
||||
portion of the complex-valued material coefficient is equal to zero.
|
||||
*/
|
||||
class MixedSesquilinearForm
|
||||
{
|
||||
private:
|
||||
ComplexOperator::Convention conv;
|
||||
|
||||
MixedBilinearForm * mblfr;
|
||||
MixedBilinearForm * mblfi;
|
||||
|
||||
/* These methods check if the real/imag parts of the sesqulinear form are not
|
||||
empty */
|
||||
bool RealInteg();
|
||||
bool ImagInteg();
|
||||
|
||||
public:
|
||||
MixedSesquilinearForm(
|
||||
FiniteElementSpace * trial_fes,
|
||||
FiniteElementSpace * test_fes,
|
||||
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
/** @brief Create a MixedSesquilinearForm on the given trial and test
|
||||
FiniteElementSpaces, using the same integrators as the
|
||||
MixedBilinearForms @a bfr and @a bfi.
|
||||
|
||||
The FiniteElementSpace pointers are not owned by the newly constructed
|
||||
object.
|
||||
|
||||
The integrators are copied as pointers and they are not owned by the
|
||||
newly constructed MixedSesquilinearForm. */
|
||||
MixedSesquilinearForm(
|
||||
FiniteElementSpace * trial_fes,
|
||||
FiniteElementSpace * test_fes,
|
||||
MixedBilinearForm * bfr,
|
||||
MixedBilinearForm * bfi,
|
||||
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
ComplexOperator::Convention GetConvention() const { return conv; }
|
||||
void SetConvention(const ComplexOperator::Convention & convention) { conv = convention; }
|
||||
|
||||
/// Set the desired assembly level.
|
||||
/** Valid choices are:
|
||||
|
||||
- AssemblyLevel::LEGACY (default)
|
||||
- AssemblyLevel::FULL
|
||||
- AssemblyLevel::PARTIAL
|
||||
- AssemblyLevel::ELEMENT
|
||||
- AssemblyLevel::NONE
|
||||
|
||||
This method must be called before assembly. */
|
||||
void SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
{
|
||||
mblfr->SetAssemblyLevel(assembly_level);
|
||||
mblfi->SetAssemblyLevel(assembly_level);
|
||||
}
|
||||
|
||||
MixedBilinearForm & real() { return *mblfr; }
|
||||
MixedBilinearForm & imag() { return *mblfi; }
|
||||
const MixedBilinearForm & real() const { return *mblfr; }
|
||||
const MixedBilinearForm & imag() const { return *mblfi; }
|
||||
|
||||
/// Adds new Domain Integrator.
|
||||
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds new Domain Integrator, restricted to specific attributes.
|
||||
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> & elem_marker);
|
||||
|
||||
/// Adds new Boundary Integrator.
|
||||
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/** @brief Adds new boundary Integrator, restricted to specific boundary
|
||||
attributes.
|
||||
|
||||
Assumes ownership of @a bfi.
|
||||
|
||||
The mfem::array @a bdr_marker is stored internally as a pointer to the given
|
||||
mfem::Array<int> object. */
|
||||
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> & bdr_marker);
|
||||
|
||||
/// Adds new interior Face Integrator. Assumes ownership of @a bfi.
|
||||
void AddInteriorFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds new boundary Face Integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/** @brief Adds new boundary Face Integrator, restricted to specific boundary
|
||||
attributes.
|
||||
|
||||
Assumes ownership of @a bfi.
|
||||
|
||||
The mfem::array @a bdr_marker is stored internally as a pointer to the given
|
||||
mfem::Array<int> object. */
|
||||
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> & bdr_marker);
|
||||
|
||||
/** @brief Add a trace face integrator. Assumes ownership of @a bfi.
|
||||
|
||||
This type of integrator assembles terms over all faces of the mesh using
|
||||
the face FE from the trial space and the two adjacent volume FEs from
|
||||
the test space. */
|
||||
void AddTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> &bdr_marker);
|
||||
|
||||
/// Assemble the local matrix
|
||||
void Assemble(int skip_zeros = 1);
|
||||
|
||||
/// Finalizes the matrix initialization.
|
||||
void Finalize(int skip_zeros = 1);
|
||||
|
||||
/// Updates the internal mixed forms with the new finite element space.
|
||||
virtual void Update();
|
||||
|
||||
/** @brief Return a ComplexSparseMatrix wrapping the local (L-dof) real
|
||||
and imaginary matrices of the form.
|
||||
|
||||
The returned wrapper has to be deleted by the caller, but it does not
|
||||
own the wrapped real and imaginary matrices, which remain owned by
|
||||
this form. */
|
||||
ComplexSparseMatrix *AssembleComplexSparseMatrix();
|
||||
|
||||
/// Return the trial FE space associated with the MixedSesquilinearForm.
|
||||
FiniteElementSpace *TrialFESpace() { return mblfr->TrialFESpace(); }
|
||||
|
||||
/// Read-only access to the associated trial FiniteElementSpace.
|
||||
const FiniteElementSpace *TrialFESpace() const { return mblfr->TrialFESpace(); }
|
||||
|
||||
/// Return the test FE space associated with the MixedSesquilinearForm.
|
||||
FiniteElementSpace *TestFESpace() { return mblfr->TestFESpace(); }
|
||||
|
||||
/// Read-only access to the associated test FiniteElementSpace.
|
||||
const FiniteElementSpace *TestFESpace() const { return mblfr->TestFESpace(); }
|
||||
|
||||
|
||||
void FormRectangularLinearSystem(const Array<int> & ess_trial_tdof_list,
|
||||
const Array<int> & ess_test_tdof_list,
|
||||
Vector & x,
|
||||
Vector & b,
|
||||
OperatorHandle & A,
|
||||
Vector & X,
|
||||
Vector & B);
|
||||
|
||||
void FormRectangularSystemMatrix(const Array<int> & ess_trial_tdof_list,
|
||||
const Array<int> & ess_test_tdof_list,
|
||||
OperatorHandle & A);
|
||||
|
||||
virtual ~MixedSesquilinearForm();
|
||||
};
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
/// Class for parallel complex-valued grid function - real + imaginary part
|
||||
@@ -989,12 +718,6 @@ private:
|
||||
bool RealInteg();
|
||||
bool ImagInteg();
|
||||
|
||||
void SetImaginaryEssentialDiagonalToZero(
|
||||
const Array<int> &ess_tdof_list, OperatorHandle &A);
|
||||
|
||||
void BuildComplexOperator(OperatorHandle &A_r, OperatorHandle &A_i,
|
||||
OperatorHandle &A) const;
|
||||
|
||||
public:
|
||||
ParSesquilinearForm(ParFiniteElementSpace *pf,
|
||||
ComplexOperator::Convention
|
||||
@@ -1110,169 +833,6 @@ public:
|
||||
virtual ~ParSesquilinearForm();
|
||||
};
|
||||
|
||||
/** Class for a parallel mixed sesquilinear form
|
||||
|
||||
A mixed sesquilinear form is a generalization of a mixed bilinear form to
|
||||
complex-valued fields. Mixed sesquilinear forms are linear in the second
|
||||
argument but the first argument involves a complex conjugate in the sense
|
||||
that:
|
||||
|
||||
a(alpha u, beta v) = conj(alpha) beta a(u, v)
|
||||
|
||||
The @a convention argument in the class's constructor is documented in the
|
||||
mfem::ComplexOperator class found in linalg/complex_operator.hpp.
|
||||
|
||||
When supplying integrators to the ParMixedSesquilinearForm either the real
|
||||
or imaginary integrator can be NULL. This indicates that the corresponding
|
||||
portion of the complex-valued material coefficient is equal to zero.
|
||||
*/
|
||||
class ParMixedSesquilinearForm
|
||||
{
|
||||
private:
|
||||
ComplexOperator::Convention conv;
|
||||
|
||||
ParMixedBilinearForm * pmblfr;
|
||||
ParMixedBilinearForm * pmblfi;
|
||||
|
||||
/* These methods check if the real/imag parts of the sesqulinear form are
|
||||
not empty */
|
||||
bool RealInteg();
|
||||
bool ImagInteg();
|
||||
|
||||
public:
|
||||
ParMixedSesquilinearForm(
|
||||
ParFiniteElementSpace * trial_fes,
|
||||
ParFiniteElementSpace * test_fes,
|
||||
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
/** @brief Create a ParMixedSesquilinearForm on the given trial and test
|
||||
ParFiniteElementSpaces, using the same integrators as the
|
||||
ParMixedBilinearForms @a pbfr and @a pbfi.
|
||||
|
||||
The ParFiniteElementSpace pointers are not owned by the newly
|
||||
constructed object.
|
||||
|
||||
The integrators are copied as pointers and they are not owned by the
|
||||
newly constructed ParMixedSesquilinearForm. */
|
||||
ParMixedSesquilinearForm(
|
||||
ParFiniteElementSpace * trial_fes,
|
||||
ParFiniteElementSpace * test_fes,
|
||||
ParMixedBilinearForm * pbfr,
|
||||
ParMixedBilinearForm * pbfi,
|
||||
ComplexOperator::Convention convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
ComplexOperator::Convention GetConvention() const { return conv; }
|
||||
void SetConvention(const ComplexOperator::Convention & convention) { conv = convention; }
|
||||
|
||||
/// Set the desired assembly level.
|
||||
/** Valid choices are:
|
||||
|
||||
- AssemblyLevel::LEGACY (default)
|
||||
- AssemblyLevel::FULL
|
||||
- AssemblyLevel::PARTIAL
|
||||
- AssemblyLevel::ELEMENT
|
||||
- AssemblyLevel::NONE
|
||||
|
||||
This method must be called before assembly. */
|
||||
void SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
{
|
||||
pmblfr->SetAssemblyLevel(assembly_level);
|
||||
pmblfi->SetAssemblyLevel(assembly_level);
|
||||
}
|
||||
|
||||
ParMixedBilinearForm & real() { return *pmblfr; }
|
||||
ParMixedBilinearForm & imag() { return *pmblfi; }
|
||||
const ParMixedBilinearForm & real() const { return *pmblfr; }
|
||||
const ParMixedBilinearForm & imag() const { return *pmblfi; }
|
||||
|
||||
/// Adds new Domain Integrator.
|
||||
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds new Domain Integrator, restricted to specific attributes.
|
||||
void AddDomainIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> & elem_marker);
|
||||
|
||||
/// Adds new Boundary Integrator.
|
||||
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/** @brief Adds new boundary Integrator, restricted to specific boundary
|
||||
attributes.
|
||||
|
||||
Assumes ownership of @a bfi.
|
||||
|
||||
The mfem::array @a bdr_marker is stored internally as a pointer to the given
|
||||
mfem::Array<int> object. */
|
||||
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> & bdr_marker);
|
||||
|
||||
/// Adds new interior Face Integrator. Assumes ownership of @a bfi.
|
||||
void AddInteriorFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds new boundary Face Integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/** @brief Adds new boundary Face Integrator, restricted to specific boundary
|
||||
attributes.
|
||||
|
||||
Assumes ownership of @a bfi.
|
||||
|
||||
The mfem::array @a bdr_marker is stored internally as a pointer to the given
|
||||
mfem::Array<int> object. */
|
||||
void AddBdrFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> & bdr_marker);
|
||||
|
||||
/** @brief Add a trace face integrator. Assumes ownership of @a bfi.
|
||||
|
||||
This type of integrator assembles terms over all faces of the mesh using
|
||||
the face FE from the trial space and the two adjacent volume FEs from
|
||||
the test space. */
|
||||
void AddTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag);
|
||||
|
||||
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi_real,
|
||||
BilinearFormIntegrator * bfi_imag,
|
||||
Array<int> &bdr_marker);
|
||||
|
||||
/// Assemble the local matrix
|
||||
void Assemble(int skip_zeros = 1);
|
||||
|
||||
/// Finalizes the matrix initialization.
|
||||
void Finalize(int skip_zeros = 1);
|
||||
|
||||
/// Updates the internal mixed forms with the new finite element space.
|
||||
virtual void Update();
|
||||
|
||||
/// Returns the matrix assembled on the true dofs, i.e. P^t A P.
|
||||
/** The returned matrix has to be deleted by the caller. */
|
||||
ComplexHypreParMatrix * ParallelAssemble();
|
||||
|
||||
void FormRectangularLinearSystem(const Array<int> & ess_trial_tdof_list,
|
||||
const Array<int> & ess_test_tdof_list,
|
||||
Vector & x,
|
||||
Vector & b,
|
||||
OperatorHandle & A,
|
||||
Vector & X,
|
||||
Vector & B);
|
||||
|
||||
void FormRectangularSystemMatrix(const Array<int> & ess_trial_tdof_list,
|
||||
const Array<int> & ess_test_tdof_list,
|
||||
OperatorHandle & A);
|
||||
|
||||
virtual ~ParMixedSesquilinearForm();
|
||||
};
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
}
|
||||
|
||||
@@ -114,10 +114,6 @@ void ConduitDataCollection::Save()
|
||||
n_mesh["fields"][name]);
|
||||
}
|
||||
|
||||
// TODO: in parallel, we need to call ParFiniteElementSpace::ApplyDofSigns
|
||||
// for all ParGridFunction objects before and after saving, see
|
||||
// ParGridFunction::Save.
|
||||
|
||||
// save mesh data
|
||||
SaveMeshAndFields(myid,
|
||||
n_mesh,
|
||||
|
||||
+10
-41
@@ -38,24 +38,9 @@ int DataCollection::create_directory(const std::string &dir_name,
|
||||
// create directories recursively
|
||||
const char path_delim = '/';
|
||||
std::string::size_type pos = 0;
|
||||
int err_flag = 0;
|
||||
int err_flag;
|
||||
#ifdef MFEM_USE_MPI
|
||||
const ParMesh *pmesh = dynamic_cast<const ParMesh*>(mesh);
|
||||
// In addition to the global root, let the lowest rank on each shared-memory
|
||||
// node create the directory too, so that node-local (non-shared) filesystems
|
||||
// get it on every node rather than only where the global root lives. On a
|
||||
// shared filesystem the extra mkdir() hits EEXIST and is tolerated below.
|
||||
bool node_root = true;
|
||||
if (pmesh)
|
||||
{
|
||||
MPI_Comm node_comm;
|
||||
MPI_Comm_split_type(pmesh->GetComm(), MPI_COMM_TYPE_SHARED, myid,
|
||||
MPI_INFO_NULL, &node_comm);
|
||||
int node_rank;
|
||||
MPI_Comm_rank(node_comm, &node_rank);
|
||||
node_root = (node_rank == 0);
|
||||
MPI_Comm_free(&node_comm);
|
||||
}
|
||||
#endif
|
||||
|
||||
do
|
||||
@@ -67,7 +52,7 @@ int DataCollection::create_directory(const std::string &dir_name,
|
||||
err_flag = mkdir(subdir.c_str(), 0777);
|
||||
err_flag = (err_flag && (errno != EEXIST)) ? 1 : 0;
|
||||
#else
|
||||
if (node_root || pmesh == NULL)
|
||||
if (myid == 0 || pmesh == NULL)
|
||||
{
|
||||
err_flag = mkdir(subdir.c_str(), 0777);
|
||||
err_flag = (err_flag && (errno != EEXIST)) ? 1 : 0;
|
||||
@@ -79,8 +64,7 @@ int DataCollection::create_directory(const std::string &dir_name,
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pmesh)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &err_flag, 1, MPI_INT, MPI_MAX,
|
||||
pmesh->GetComm());
|
||||
MPI_Bcast(&err_flag, 1, MPI_INT, 0, pmesh->GetComm());
|
||||
}
|
||||
#endif
|
||||
|
||||
@@ -508,8 +492,6 @@ void VisItDataCollection::SaveRootFile()
|
||||
to_padded_string(cycle, pad_digits_cycle) +
|
||||
".mfem_root";
|
||||
std::ofstream root_file(root_name);
|
||||
MFEM_VERIFY(root_file.is_open(),
|
||||
"Failed to open ofstream " << root_name);
|
||||
root_file << GetVisItRootString();
|
||||
if (!root_file)
|
||||
{
|
||||
@@ -825,7 +807,7 @@ ParaViewDataCollectionBase::ParaViewDataCollectionBase(
|
||||
|
||||
void ParaViewDataCollectionBase::SetLevelsOfDetail(int levels_of_detail_)
|
||||
{
|
||||
levels_of_detail = std::max(levels_of_detail_, 1);
|
||||
levels_of_detail = levels_of_detail_;
|
||||
}
|
||||
|
||||
void ParaViewDataCollectionBase::SetHighOrderOutput(bool high_order_output_)
|
||||
@@ -995,10 +977,7 @@ void ParaViewDataCollection::Save()
|
||||
// Save the local part of the mesh and grid functions fields to the local
|
||||
// VTU file. Also save coefficient fields.
|
||||
{
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName("proc", myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName("proc", myid));
|
||||
os.precision(precision);
|
||||
SaveDataVTU(os, levels_of_detail);
|
||||
}
|
||||
@@ -1010,10 +989,7 @@ void ParaViewDataCollection::Save()
|
||||
"QuadratureFunction output is not supported for "
|
||||
"ParaViewDataCollection on domain boundary!");
|
||||
const std::string &field_name = qfield.first;
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName(field_name, myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName(field_name, myid));
|
||||
qfield.second->SaveVTU(os, pv_data_format, GetCompressionLevel(), field_name);
|
||||
}
|
||||
|
||||
@@ -1024,10 +1000,7 @@ void ParaViewDataCollection::Save()
|
||||
{
|
||||
// Create the main PVTU file
|
||||
{
|
||||
std::string os_str = vtu_prefix + GeneratePVTUFileName("data");
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
std::ofstream pvtu_out(vtu_prefix + GeneratePVTUFileName("data"));
|
||||
WritePVTUHeader(pvtu_out);
|
||||
|
||||
// Grid function fields and coefficient fields
|
||||
@@ -1082,10 +1055,8 @@ void ParaViewDataCollection::Save()
|
||||
const std::string &q_field_name = q_field.first;
|
||||
std::string q_fname = GeneratePVTUPath() + "/"
|
||||
+ GeneratePVTUFileName(q_field_name);
|
||||
std::string os_str = col_path + "/" + q_fname;
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
|
||||
std::ofstream pvtu_out(col_path + "/" + q_fname);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
int vec_dim = q_field.second->GetVDim();
|
||||
pvtu_out << "<PPointData>\n";
|
||||
@@ -1197,14 +1168,12 @@ void ParaViewDataCollection::SaveGFieldVTU(std::ostream &os, int ref_,
|
||||
DenseMatrix vval, pmat;
|
||||
std::vector<char> buf;
|
||||
int vec_dim = it->second->VectorDim();
|
||||
int map_type = it->second->FESpace()->GetTypicalFE()->GetMapType();
|
||||
os << "<DataArray type=\"" << GetDataTypeString()
|
||||
<< "\" Name=\"" << it->first
|
||||
<< "\" NumberOfComponents=\"" << vec_dim << "\" "
|
||||
<< VTKComponentLabels(vec_dim) << " "
|
||||
<< "format=\"" << GetDataFormatString() << "\" >" << '\n';
|
||||
if (vec_dim == 1 && (map_type == FiniteElement::VALUE ||
|
||||
map_type == FiniteElement::INTEGRAL))
|
||||
if (vec_dim == 1)
|
||||
{
|
||||
for (int i = 0; i < mesh->GetNE(); i++)
|
||||
{
|
||||
|
||||
@@ -51,52 +51,4 @@ DifferentiableOperator::DifferentiableOperator(
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void FDJacobian::Mult(const Vector &v, Vector &y) const
|
||||
{
|
||||
// See [1] for choice of eps.
|
||||
//
|
||||
// [1] Woodward, C.S., Gardner, D.J. and Evans, K.J., 2015. On the use of
|
||||
// finite difference matrix-vector products in Newton-Krylov solvers for
|
||||
// implicit climate dynamics with spectral elements. Procedia Computer
|
||||
// Science, 51, pp.2036-2045.
|
||||
real_t eps;
|
||||
if (fixed_eps > 0.0)
|
||||
{
|
||||
eps = fixed_eps;
|
||||
}
|
||||
else
|
||||
{
|
||||
const real_t vnorm_local = v.Norml2();
|
||||
real_t vnorm;
|
||||
MPI_Allreduce(&vnorm_local, &vnorm, 1, MPITypeMap<real_t>::mpi_type, MPI_SUM,
|
||||
MPI_COMM_WORLD);
|
||||
eps = lambda * (lambda + xnorm / vnorm);
|
||||
}
|
||||
|
||||
// x + eps * v
|
||||
{
|
||||
const auto d_v = v.Read();
|
||||
const auto d_x = x.Read();
|
||||
auto d_xpev = xpev.Write();
|
||||
mfem::forall(x.Size(), [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
d_xpev[i] = d_x[i] + eps * d_v[i];
|
||||
});
|
||||
}
|
||||
|
||||
// y = f(x + eps * v)
|
||||
op.Mult(xpev, y);
|
||||
|
||||
// y = (f(x + eps * v) - f(x)) / eps
|
||||
{
|
||||
const auto d_f = f.Read();
|
||||
auto d_y = y.ReadWrite();
|
||||
mfem::forall(f.Size(), [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
d_y[i] = (d_y[i] - d_f[i]) / eps;
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
+22
-23
@@ -697,18 +697,17 @@ void DifferentiableOperator::AddIntegrator(
|
||||
|
||||
// The explicit captures are necessary to avoid dependency on
|
||||
// the specific instance of this class (this pointer).
|
||||
restriction_callback = [element_dof_ordering,
|
||||
solutions_ = this->solutions,
|
||||
parameters_ = this->parameters]
|
||||
(std::vector<Vector> &sol,
|
||||
const std::vector<Vector> &par,
|
||||
std::vector<Vector> &f)
|
||||
restriction_callback =
|
||||
[=, solutions = this->solutions, parameters = this->parameters]
|
||||
(std::vector<Vector> &sol,
|
||||
const std::vector<Vector> &par,
|
||||
std::vector<Vector> &f)
|
||||
{
|
||||
restriction<entity_t>(solutions_, sol, f,
|
||||
restriction<entity_t>(solutions, sol, f,
|
||||
element_dof_ordering);
|
||||
restriction<entity_t>(parameters_, par, f,
|
||||
restriction<entity_t>(parameters, par, f,
|
||||
element_dof_ordering,
|
||||
solutions_.size());
|
||||
solutions.size());
|
||||
};
|
||||
|
||||
prolongation_transpose = get_prolongation_transpose(
|
||||
@@ -836,19 +835,19 @@ void DifferentiableOperator::AddIntegrator(
|
||||
|
||||
// capture by ref:
|
||||
&restriction_cb = this->restriction_callback,
|
||||
&fields_e_ = this->fields_e,
|
||||
&residual_e_ = this->residual_e,
|
||||
&output_restriction_transpose_ = this->output_restriction_transpose
|
||||
&fields_e = this->fields_e,
|
||||
&residual_e = this->residual_e,
|
||||
&output_restriction_transpose = this->output_restriction_transpose
|
||||
]
|
||||
(std::vector<Vector> &sol, const std::vector<Vector> &par, Vector &res)
|
||||
mutable // mutable: needed to modify 'shmem_cache'
|
||||
{
|
||||
restriction_cb(sol, par, fields_e_);
|
||||
restriction_cb(sol, par, fields_e);
|
||||
|
||||
residual_e_ = 0.0;
|
||||
auto ye = Reshape(residual_e_.ReadWrite(), test_vdim, num_test_dof, num_entities);
|
||||
residual_e = 0.0;
|
||||
auto ye = Reshape(residual_e.ReadWrite(), test_vdim, num_test_dof, num_entities);
|
||||
|
||||
auto wrapped_fields_e = wrap_fields(fields_e_,
|
||||
auto wrapped_fields_e = wrap_fields(fields_e,
|
||||
action_shmem_info.field_sizes,
|
||||
num_entities);
|
||||
|
||||
@@ -879,7 +878,7 @@ void DifferentiableOperator::AddIntegrator(
|
||||
y, fhat, output_fop, output_dtq_shmem[0],
|
||||
scratch_shmem, dimension, use_sum_factorization);
|
||||
}, num_entities, thread_blocks, action_shmem_info.total_size, shmem_cache.ReadWrite());
|
||||
output_restriction_transpose_(residual_e_, res);
|
||||
output_restriction_transpose(residual_e, res);
|
||||
});
|
||||
|
||||
// Without this compile-time check, some valid instantiations of this method
|
||||
@@ -1194,7 +1193,7 @@ void DifferentiableOperator::AddIntegrator(
|
||||
|
||||
// capture by ref:
|
||||
&qpdc_mem = derivative_qp_caches_ref,
|
||||
&fields_ = fields_ref
|
||||
&fields = fields_ref
|
||||
](std::vector<Vector> &f_e, SparseMatrix *&A) mutable
|
||||
{
|
||||
auto wrapped_fields_e = wrap_fields(f_e, shmem_info.field_sizes,
|
||||
@@ -1242,14 +1241,14 @@ void DifferentiableOperator::AddIntegrator(
|
||||
{
|
||||
if (input_is_dependent[s])
|
||||
{
|
||||
trial_field = &fields_[input_to_field[s]];
|
||||
trial_field = &fields[input_to_field[s]];
|
||||
}
|
||||
}
|
||||
|
||||
auto trial_fes = *std::get_if<const ParFiniteElementSpace *>
|
||||
(&trial_field->data);
|
||||
auto test_fes = *std::get_if<const ParFiniteElementSpace *>
|
||||
(&fields_[output_to_field[0]].data);
|
||||
(&fields[output_to_field[0]].data);
|
||||
|
||||
A = new SparseMatrix(test_fes->GetVSize(), trial_fes->GetVSize());
|
||||
|
||||
@@ -1335,7 +1334,7 @@ void DifferentiableOperator::AddIntegrator(
|
||||
input_to_field,
|
||||
output_to_field,
|
||||
&spmatcb = assemble_derivative_sparsematrix_callbacks_ref,
|
||||
&fields_ = fields_ref
|
||||
&fields = fields_ref
|
||||
](std::vector<Vector> &f_e, HypreParMatrix *&A) mutable
|
||||
{
|
||||
SparseMatrix *spmat = nullptr;
|
||||
@@ -1367,14 +1366,14 @@ void DifferentiableOperator::AddIntegrator(
|
||||
{
|
||||
if (input_is_dependent[s])
|
||||
{
|
||||
trial_field = &fields_[input_to_field[s]];
|
||||
trial_field = &fields[input_to_field[s]];
|
||||
}
|
||||
}
|
||||
|
||||
auto trial_fes = *std::get_if<const ParFiniteElementSpace *>
|
||||
(&trial_field->data);
|
||||
auto test_fes = *std::get_if<const ParFiniteElementSpace *>
|
||||
(&fields_[output_to_field[0]].data);
|
||||
(&fields[output_to_field[0]].data);
|
||||
|
||||
if (same_test_and_trial)
|
||||
{
|
||||
|
||||
+8
-11
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor");
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -169,9 +169,8 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
"for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -307,9 +306,8 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -494,9 +492,8 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+768
-742
File diff suppressed because it is too large
Load Diff
+52
-9
@@ -597,7 +597,7 @@ struct ThreadBlocks
|
||||
int z = 1;
|
||||
};
|
||||
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP_LANG)
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP)
|
||||
template <typename func_t>
|
||||
__global__ void forall_kernel_shmem(func_t f, int n)
|
||||
{
|
||||
@@ -617,11 +617,10 @@ void forall(func_t f,
|
||||
int num_shmem = 0,
|
||||
real_t *shmem = nullptr)
|
||||
{
|
||||
internal::RequireKernelCompilation();
|
||||
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP_LANG)
|
||||
if (Device::Allows(Backend::CUDA_MASK | Backend::HIP_MASK))
|
||||
if (Device::Allows(Backend::CUDA_MASK) ||
|
||||
Device::Allows(Backend::HIP_MASK))
|
||||
{
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP)
|
||||
// int gridsize = (N + Z - 1) / Z;
|
||||
int num_bytes = num_shmem * sizeof(decltype(shmem));
|
||||
dim3 block_size(blocks.x, blocks.y, blocks.z);
|
||||
@@ -632,10 +631,9 @@ void forall(func_t f,
|
||||
MFEM_GPU_CHECK(hipGetLastError());
|
||||
#endif
|
||||
MFEM_DEVICE_SYNC;
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
if (Device::Allows(Backend::CPU_MASK))
|
||||
}
|
||||
else if (Device::Allows(Backend::CPU_MASK))
|
||||
{
|
||||
MFEM_ASSERT(!((bool)num_shmem != (bool)shmem),
|
||||
"Backend::CPU needs a pre-allocated shared memory block");
|
||||
@@ -673,7 +671,52 @@ public:
|
||||
MPI_COMM_WORLD);
|
||||
}
|
||||
|
||||
void Mult(const Vector &v, Vector &y) const override;
|
||||
void Mult(const Vector &v, Vector &y) const override
|
||||
{
|
||||
// See [1] for choice of eps.
|
||||
//
|
||||
// [1] Woodward, C.S., Gardner, D.J. and Evans, K.J., 2015. On the use of
|
||||
// finite difference matrix-vector products in Newton-Krylov solvers for
|
||||
// implicit climate dynamics with spectral elements. Procedia Computer
|
||||
// Science, 51, pp.2036-2045.
|
||||
real_t eps;
|
||||
if (fixed_eps > 0.0)
|
||||
{
|
||||
eps = fixed_eps;
|
||||
}
|
||||
else
|
||||
{
|
||||
const real_t vnorm_local = v.Norml2();
|
||||
real_t vnorm;
|
||||
MPI_Allreduce(&vnorm_local, &vnorm, 1, MPITypeMap<real_t>::mpi_type, MPI_SUM,
|
||||
MPI_COMM_WORLD);
|
||||
eps = lambda * (lambda + xnorm / vnorm);
|
||||
}
|
||||
|
||||
// x + eps * v
|
||||
{
|
||||
const auto d_v = v.Read();
|
||||
const auto d_x = x.Read();
|
||||
auto d_xpev = xpev.Write();
|
||||
mfem::forall(x.Size(), [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
d_xpev[i] = d_x[i] + eps * d_v[i];
|
||||
});
|
||||
}
|
||||
|
||||
// y = f(x + eps * v)
|
||||
op.Mult(xpev, y);
|
||||
|
||||
// y = (f(x + eps * v) - f(x)) / eps
|
||||
{
|
||||
const auto d_f = f.Read();
|
||||
auto d_y = y.ReadWrite();
|
||||
mfem::forall(f.Size(), [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
d_y[i] = (d_y[i] - d_f[i]) / eps;
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
virtual MemoryClass GetMemoryClass() const override
|
||||
{
|
||||
|
||||
@@ -57,7 +57,7 @@ void DGMassApply(const int e,
|
||||
}
|
||||
else if (DIM == 3)
|
||||
{
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,NBZ,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
|
||||
+6
-6
@@ -320,8 +320,8 @@ public:
|
||||
error estimation procedure where the flux averaging is replaced by a global
|
||||
L2 projection (requiring a mass matrix solve).
|
||||
|
||||
The required BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
The required BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
|
||||
Implemented for the parallel case only.
|
||||
*/
|
||||
@@ -357,8 +357,8 @@ protected:
|
||||
|
||||
public:
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator assumes ownership of this
|
||||
FiniteElementSpace and will call its Update() method when
|
||||
@@ -382,8 +382,8 @@ public:
|
||||
{ }
|
||||
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator does NOT assume ownership
|
||||
of this FiniteElementSpace; will call its Update() method
|
||||
|
||||
+54
-133
@@ -663,59 +663,58 @@ const
|
||||
#pragma omp critical (DofToQuad)
|
||||
#endif
|
||||
{
|
||||
// Do not run if the new Dof2Quad is already present, e.g. added in a
|
||||
// previous call or added by another omp thread.
|
||||
// If the new Dof2Quad is already present, e.g. added in a previous call
|
||||
// or added by another omp thread, return.
|
||||
if (DofToQuad::SearchArray(dof2quad_array, ir,
|
||||
DofToQuad::LEXICOGRAPHIC_FULL) == nullptr)
|
||||
DofToQuad::LEXICOGRAPHIC_FULL))
|
||||
{ return; }
|
||||
|
||||
// Undo the native ordering which is what FiniteElement::GetDofToQuad
|
||||
// returns.
|
||||
auto *d2q_new = new DofToQuad(d2q);
|
||||
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
|
||||
const int b_dim = (range_type == VECTOR) ? dim : 1;
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
// Undo the native ordering which is what FiniteElement::GetDofToQuad
|
||||
// returns.
|
||||
auto *d2q_new = new DofToQuad(d2q);
|
||||
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
|
||||
const int b_dim = (range_type == VECTOR) ? dim : 1;
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
for (int d = 0; d < b_dim; d++)
|
||||
{
|
||||
for (int d = 0; d < b_dim; d++)
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
|
||||
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
|
||||
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
|
||||
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
|
||||
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
|
||||
const int g_dim = [this]()
|
||||
{
|
||||
switch (deriv_type)
|
||||
{
|
||||
case GRAD: return dim;
|
||||
case DIV: return 1;
|
||||
case CURL: return cdim;
|
||||
default: return 0;
|
||||
}
|
||||
}();
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int d = 0; d < g_dim; d++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
|
||||
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
|
||||
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q_new);
|
||||
}
|
||||
|
||||
const int g_dim = [this]()
|
||||
{
|
||||
switch (deriv_type)
|
||||
{
|
||||
case GRAD: return dim;
|
||||
case DIV: return 1;
|
||||
case CURL: return cdim;
|
||||
default: return 0;
|
||||
}
|
||||
}();
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int d = 0; d < g_dim; d++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
|
||||
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
|
||||
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q_new);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1044,50 +1043,9 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
switch (map_type)
|
||||
{
|
||||
case H_DIV:
|
||||
switch (dim)
|
||||
{
|
||||
case 3: // div: 3D H_DIV -> 3D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 2: // div: 2D H_DIV -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case H_CURL:
|
||||
switch (dim)
|
||||
@@ -1105,49 +1063,13 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
break;
|
||||
case 1:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
// curl: 2D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R1D -> H_DIV_R1D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R1D;
|
||||
break;
|
||||
case 0:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid MapType = " << map_type);
|
||||
}
|
||||
@@ -1316,14 +1238,13 @@ void VectorFiniteElement::Project_RT(
|
||||
}
|
||||
}
|
||||
|
||||
void VectorFiniteElement::ProjectCurl2D_RT(
|
||||
void VectorFiniteElement::ProjectGrad_RT(
|
||||
const real_t *nk, const Array<int> &d2n, const FiniteElement &fe,
|
||||
ElementTransformation &Trans, DenseMatrix &grad) const
|
||||
{
|
||||
// 2D "ProjectCurl_RT"
|
||||
if (dim != 2)
|
||||
{
|
||||
mfem_error("VectorFiniteElement::ProjectCurl2D_RT works only in 2D!");
|
||||
mfem_error("VectorFiniteElement::ProjectGrad_RT works only in 2D!");
|
||||
}
|
||||
|
||||
DenseMatrix dshape(fe.GetDof(), fe.GetDim());
|
||||
@@ -1334,8 +1255,8 @@ void VectorFiniteElement::ProjectCurl2D_RT(
|
||||
for (int k = 0; k < dof; k++)
|
||||
{
|
||||
fe.CalcDShape(Nodes.IntPoint(k), dshape);
|
||||
tk[0] = -nk[d2n[k]*dim+1];
|
||||
tk[1] = nk[d2n[k]*dim];
|
||||
tk[0] = nk[d2n[k]*dim+1];
|
||||
tk[1] = -nk[d2n[k]*dim];
|
||||
dshape.Mult(tk, grad_k);
|
||||
for (int j = 0; j < grad_k.Size(); j++)
|
||||
{
|
||||
@@ -1382,7 +1303,7 @@ void VectorFiniteElement::ProjectCurl_ND(
|
||||
}
|
||||
}
|
||||
|
||||
void VectorFiniteElement::ProjectCurl3D_RT(
|
||||
void VectorFiniteElement::ProjectCurl_RT(
|
||||
const real_t *nk, const Array<int> &d2n, const FiniteElement &fe,
|
||||
ElementTransformation &Trans, DenseMatrix &curl) const
|
||||
{
|
||||
|
||||
+11
-83
@@ -167,15 +167,7 @@ public:
|
||||
/** @brief Full multidimensional representation which does not use tensor
|
||||
product structure. The ordering of the degrees of freedom is the
|
||||
same as TENSOR, but the sizes of B and G are the same as FULL.*/
|
||||
LEXICOGRAPHIC_FULL,
|
||||
|
||||
/** @brief Ragged tensor product representation using 1D matrices/tensors
|
||||
with dimensions using 1D number of quadrature points and ragged tensor degrees of
|
||||
freedom. */
|
||||
/** Used only for partial assembly of the H1 positive basis. The
|
||||
size of B is d1d x qnpt x dim. Since different Gauss-Jacobi quadrature rules
|
||||
are employed in each dimension, we need to store dim arrays. */
|
||||
RAGGED_TENSOR
|
||||
LEXICOGRAPHIC_FULL
|
||||
};
|
||||
|
||||
/// Describes the contents of the #B, #Bt, #G, and #Gt arrays, see #Mode.
|
||||
@@ -236,39 +228,6 @@ public:
|
||||
const Array<DofToQuad*> &dof2quad_array,
|
||||
const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode);
|
||||
|
||||
virtual ~DofToQuad() = default;
|
||||
};
|
||||
|
||||
/** @brief Structure representing the matrices/tensors needed to evaluate (in
|
||||
reference space) the values, gradients, divergences, or curls of a positive
|
||||
FiniteElement on simplices at the quadrature points of Stroud conical quadrature. */
|
||||
class RaggedDofToQuad : public DofToQuad
|
||||
{
|
||||
public:
|
||||
/** @brief Special basis function structures for positive (Bernstein) basis with
|
||||
partial assembly. The storage layout of Ba1 is ndof x nqpt for scalar elements.
|
||||
The storage layout of Ba2 is ndof x ndof x nqpt. In particular, we have
|
||||
Ba2(iqpt, a1, a2) = B^{p-a1}_{a2}(x_{iqpt}). */
|
||||
Array<real_t> Ba1, Ba2, Ba3;
|
||||
Array<real_t> Ba1t, Ba2t, Ba3t;
|
||||
|
||||
/** @brief Special structures for gradients of positive basis with partial assembly.
|
||||
The gradient arrays exploit properties of the Bernstein basis which allow grad(B^p_alpha)
|
||||
to be expressed as the sum of products of B^{p-1}_alpha and the barycentric coordinates.
|
||||
Thus, Ga1 and Ga2 simply contain the ragged tensor product components of B^{p-1}_alpha */
|
||||
Array<real_t> Ga1, Ga2, Ga3;
|
||||
Array<real_t> Ga1t, Ga2t, Ga3t;
|
||||
|
||||
/** @brief Mapping from the Bernstein multi-index (a_1, ..., a_d) to the lexicographic
|
||||
dof index. */
|
||||
Array<int> lex_map;
|
||||
|
||||
Array<int> forward_map2d_diff, forward_map3d_diff;
|
||||
Array<int> inverse_map2d_diff, inverse_map3d_diff;
|
||||
|
||||
Array<int> forward_map2d_mass, forward_map3d_mass;
|
||||
Array<int> inverse_map2d_mass, inverse_map3d_mass;
|
||||
};
|
||||
|
||||
/// Describes the function space on each element
|
||||
@@ -336,20 +295,10 @@ public:
|
||||
$ u(x) = (1/w) \hat u(\hat x) $ */
|
||||
H_DIV, /**< For vector fields; preserves surface integrals of the
|
||||
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
|
||||
H_CURL, /**< For vector fields; preserves line integrals of the
|
||||
H_CURL /**< For vector fields; preserves line integrals of the
|
||||
tangential component
|
||||
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
|
||||
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
|
||||
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_DIV basis and an INTEGRAL basis */
|
||||
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_CURL basis and a VALUE basis */
|
||||
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of a VALUE basis and a pair of INTEGRAL
|
||||
bases */
|
||||
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of an INTEGRAL basis and a pair of VALUE
|
||||
bases */
|
||||
};
|
||||
|
||||
/** @brief Enumeration for DerivType: defines which derivative method
|
||||
@@ -381,28 +330,12 @@ public:
|
||||
int GetDim() const { return dim; }
|
||||
|
||||
/** @brief Returns the vector dimension for vector-valued finite elements,
|
||||
which is also the dimension of the interpolation operation and the
|
||||
width of the DenseMatrix argument in
|
||||
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
|
||||
which is also the dimension of the interpolation operation. */
|
||||
int GetRangeDim() const { return vdim; }
|
||||
|
||||
/** @brief Returns the vector dimension, in physical space, for
|
||||
vector-valued finite elements, which is also the width of the
|
||||
DenseMatrix argument in
|
||||
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
|
||||
virtual int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
|
||||
|
||||
/** Returns the dimension of the curl for vector-valued finite elements,
|
||||
which is also the width of the DenseMatrix argument in
|
||||
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
|
||||
/// Returns the dimension of the curl for vector-valued finite elements.
|
||||
int GetCurlDim() const { return cdim; }
|
||||
|
||||
/** Returns the dimension, in physical space, of the curl for vector-valued
|
||||
finite elements, which is also the width of the DenseMatrix argument in
|
||||
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
|
||||
*/
|
||||
virtual int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
|
||||
|
||||
/// Returns the Geometry::Type of the reference element.
|
||||
Geometry::Type GetGeomType() const { return geom_type; }
|
||||
|
||||
@@ -957,11 +890,10 @@ protected:
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &I) const;
|
||||
|
||||
// Input is a scalar representing the Z (out of plane) component, Output is
|
||||
// the X-Y (in-plane) RT curl
|
||||
void ProjectCurl2D_RT(const real_t *nk, const Array<int> &d2n,
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &grad) const;
|
||||
// rotated gradient in 2D
|
||||
void ProjectGrad_RT(const real_t *nk, const Array<int> &d2n,
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &grad) const;
|
||||
|
||||
// Compute the curl as a discrete operator from ND FE (fe) to ND FE (this).
|
||||
// The natural FE for the range is RT, so this is an approximation.
|
||||
@@ -969,9 +901,9 @@ protected:
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const;
|
||||
|
||||
void ProjectCurl3D_RT(const real_t *nk, const Array<int> &d2n,
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const;
|
||||
void ProjectCurl_RT(const real_t *nk, const Array<int> &d2n,
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const;
|
||||
|
||||
/** @brief Project a vector coefficient onto the ND basis functions
|
||||
@param tk Edge tangent vectors for this element type
|
||||
@@ -1058,8 +990,6 @@ protected:
|
||||
public:
|
||||
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
|
||||
int F = FunctionSpace::Pk);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return space_dim; }
|
||||
};
|
||||
|
||||
/// @brief Class for computing 1D special polynomials and their associated basis
|
||||
@@ -1447,8 +1377,6 @@ public:
|
||||
dof2quad_array_open);
|
||||
}
|
||||
|
||||
const Poly_1D::Basis &GetOpenBasis1D() const { return obasis1d; }
|
||||
|
||||
virtual ~VectorTensorFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
@@ -307,12 +307,12 @@ public:
|
||||
|
||||
/** @brief virtual function which evaluates the values of all
|
||||
shape functions at a given point ip and stores
|
||||
them in the vector shape of dimension Dof (6) */
|
||||
them in the vector shape of dimension Dof (4) */
|
||||
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override;
|
||||
|
||||
/** @brief virtual function which evaluates the values of all
|
||||
partial derivatives of all shape functions at a given
|
||||
point ip and stores them in the matrix dshape (Dof x Dim) (6 x 3)
|
||||
point ip and stores them in the matrix dshape (Dof x Dim) (4 x 3)
|
||||
so that each row contains the derivatives of one shape function */
|
||||
void CalcDShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &dshape) const override;
|
||||
@@ -336,12 +336,12 @@ public:
|
||||
|
||||
/** @brief virtual function which evaluates the values of all
|
||||
shape functions at a given point ip and stores
|
||||
them in the vector shape of dimension Dof (5) */
|
||||
them in the vector shape of dimension Dof (4) */
|
||||
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override;
|
||||
|
||||
/** @brief virtual function which evaluates the values of all
|
||||
partial derivatives of all shape functions at a given
|
||||
point ip and stores them in the matrix dshape (Dof x Dim) (5 x 3)
|
||||
point ip and stores them in the matrix dshape (Dof x Dim) (4 x 3)
|
||||
so that each row contains the derivatives of one shape function */
|
||||
void CalcDShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &dshape) const override;
|
||||
|
||||
+58
-131
@@ -589,7 +589,7 @@ void H1_TriangleElement::CalcHessian(const IntegrationPoint &ip,
|
||||
Vector shape_x(p + 1), shape_y(p + 1), shape_l(p + 1);
|
||||
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_l(p + 1);
|
||||
Vector ddshape_x(p + 1), ddshape_y(p + 1), ddshape_l(p + 1);
|
||||
DenseMatrix ddu(dof, (dim*(dim+1))/2);
|
||||
DenseMatrix ddu(dof, dim);
|
||||
#endif
|
||||
|
||||
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x, ddshape_x);
|
||||
@@ -1757,45 +1757,22 @@ H1_BergotPyramidElement::H1_BergotPyramidElement(const int p, const int btype)
|
||||
real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
real_t z = ip.z;
|
||||
|
||||
if (std::abs(z - 1.0) < apex_tol)
|
||||
{
|
||||
// Compute the limit of the basis functions as z->1 with x and y on the
|
||||
// line between the center of the base and the apex
|
||||
o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
if (i == 0 && j == 0)
|
||||
{
|
||||
T(o++, m) = ((k + 3.) * k + 2.) / 2.;
|
||||
}
|
||||
else
|
||||
{
|
||||
T(o++, m) = 0.;
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
|
||||
o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
{
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0, shape_z);
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0, shape_z);
|
||||
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
{
|
||||
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
{
|
||||
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1816,44 +1793,25 @@ void H1_BergotPyramidElement::CalcShape(const IntegrationPoint &ip,
|
||||
Vector u(dof);
|
||||
#endif
|
||||
|
||||
const real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
|
||||
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
const real_t z = ip.z;
|
||||
real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
|
||||
real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
real_t z = ip.z;
|
||||
|
||||
if (std::abs(z - 1.0) < apex_tol)
|
||||
{
|
||||
// Compute the limit of the basis functions as z->1 with x and y on the
|
||||
// line between the center of the base and the apex
|
||||
u = 0.;
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
if (i == 0 && j == 0)
|
||||
{
|
||||
u(o) = ((k + 3.) * k + 2.) / 2.;
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
|
||||
shape_z);
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0, shape_z);
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
}
|
||||
Ti.Mult(u, shape);
|
||||
}
|
||||
|
||||
@@ -1872,68 +1830,37 @@ void H1_BergotPyramidElement::CalcDShape(const IntegrationPoint &ip,
|
||||
Vector dshape_z(order+1);
|
||||
Vector dshape_z_dt(order+1);
|
||||
#endif
|
||||
const real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
|
||||
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
const real_t z = ip.z;
|
||||
real_t x = (ip.z < 1.0) ? (ip.x / (1.0 - ip.z)) : 0.0;
|
||||
real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
real_t z = ip.z;
|
||||
|
||||
if (std::abs(z - 1.0) < apex_tol)
|
||||
{
|
||||
// Compute the limit of the gradients of the basis functions as
|
||||
// z->1 with x and y on the line between the center of the base and the
|
||||
// apex
|
||||
du = 0.;
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
|
||||
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
|
||||
shape_z, dshape_z, dshape_z_dt);
|
||||
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
{
|
||||
if (i == 0 && j == 0)
|
||||
{
|
||||
du(o,2) = (((k + 6.) * k + 11.) * k + 6.) * k / 6.;
|
||||
}
|
||||
else if (i == 1 && j == 0)
|
||||
{
|
||||
du(o,0) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
|
||||
}
|
||||
else if (i == 0 && j == 1)
|
||||
{
|
||||
du(o,1) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
|
||||
}
|
||||
}
|
||||
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
|
||||
pow(1.0 - ip.z, maxij) +
|
||||
(ip.x * dshape_x(i) * shape_y(j) +
|
||||
ip.y * shape_x(i) * dshape_y(j)) *
|
||||
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
|
||||
maxij * shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
|
||||
}
|
||||
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0,
|
||||
shape_z, dshape_z, dshape_z_dt);
|
||||
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
{
|
||||
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
|
||||
pow(1.0 - ip.z, maxij) +
|
||||
(ip.x * dshape_x(i) * shape_y(j) +
|
||||
ip.y * shape_x(i) * dshape_y(j)) *
|
||||
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
|
||||
maxij * shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
(maxij > 0 ? pow(1.0 - ip.z, maxij - 1) : 0.0);
|
||||
}
|
||||
}
|
||||
}
|
||||
Ti.Mult(du, dshape);
|
||||
}
|
||||
|
||||
|
||||
@@ -208,8 +208,6 @@ private:
|
||||
#endif
|
||||
DenseMatrixInverse Ti;
|
||||
|
||||
static constexpr real_t apex_tol = 1e-8;
|
||||
|
||||
public:
|
||||
H1_BergotPyramidElement(const int p,
|
||||
const int btype = BasisType::GaussLobatto);
|
||||
|
||||
+57
-131
@@ -1106,16 +1106,9 @@ L2_BergotPyramidElement::L2_BergotPyramidElement(const int p, const int btype)
|
||||
{
|
||||
const real_t wik = op[i] + op[k] + op[p-i-k];
|
||||
const real_t w = wik * wjk * op[p-k];
|
||||
if (std::abs(w) < apex_tol)
|
||||
{
|
||||
Nodes.IntPoint(o++).Set3(0.,0.,1.);
|
||||
}
|
||||
else
|
||||
{
|
||||
Nodes.IntPoint(o++).Set3(op[i] * (op[j] + op[p-j-k]) / w,
|
||||
op[j] * (op[i] + op[p-i-k]) / w,
|
||||
op[k] * op[p-k] / w);
|
||||
}
|
||||
Nodes.IntPoint(o++).Set3(op[i] * (op[j] + op[p-j-k]) / w,
|
||||
op[j] * (op[j] + op[p-j-k]) / w,
|
||||
op[k] * op[p-k] / w);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1132,45 +1125,22 @@ L2_BergotPyramidElement::L2_BergotPyramidElement(const int p, const int btype)
|
||||
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
const real_t z = ip.z;
|
||||
|
||||
if (std::abs(z - 1.0) < apex_tol)
|
||||
{
|
||||
// Compute the limit of the basis functions as z->1 with x and y on the
|
||||
// line between the center of the base and the apex
|
||||
o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
if (i == 0 && j == 0)
|
||||
{
|
||||
T(o++, m) = ((k + 3.) * k + 2.) / 2.;
|
||||
}
|
||||
else
|
||||
{
|
||||
T(o++, m) = 0.;
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
|
||||
o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
{
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0, shape_z);
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0, shape_z);
|
||||
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
{
|
||||
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
{
|
||||
T(o++, m) = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1195,41 +1165,26 @@ void L2_BergotPyramidElement::CalcShape(const IntegrationPoint &ip,
|
||||
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
const real_t z = ip.z;
|
||||
|
||||
if (std::abs(z - 1.0) < apex_tol)
|
||||
{
|
||||
// Compute the limit of the basis functions as z->1 with x and y on the
|
||||
// line between the center of the base and the apex
|
||||
u = 0.;
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
if (i == 0 && j == 0)
|
||||
{
|
||||
u(o) = ((k + 3.) * k + 2.) / 2.;
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
poly1d.CalcLegendre(p, x, shape_x.GetData());
|
||||
poly1d.CalcLegendre(p, y, shape_y.GetData());
|
||||
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0, shape_z);
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
{
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
|
||||
shape_z);
|
||||
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
for (int k = 0; k <= p - maxij; k++)
|
||||
{
|
||||
u[o++] = shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Ti.Mult(u, shape);
|
||||
}
|
||||
|
||||
@@ -1253,64 +1208,35 @@ void L2_BergotPyramidElement::CalcDShape(const IntegrationPoint &ip,
|
||||
const real_t y = (ip.z < 1.0) ? (ip.y / (1.0 - ip.z)) : 0.0;
|
||||
const real_t z = ip.z;
|
||||
|
||||
if (std::abs(z - 1.0) < apex_tol)
|
||||
{
|
||||
// Compute the limit of the gradients of the basis functions as
|
||||
// z->1 with x and y on the line between the center of the base and the
|
||||
// apex
|
||||
du = 0.;
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
{
|
||||
if (i == 0 && j == 0)
|
||||
{
|
||||
du(o,2) = (((k + 6.) * k + 11.) * k + 6.) * k / 6.;
|
||||
}
|
||||
else if (i == 1 && j == 0)
|
||||
{
|
||||
du(o,0) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
|
||||
}
|
||||
else if (i == 0 && j == 1)
|
||||
{
|
||||
du(o,1) = ((((k + 10.) * k + 35.) * k + 50.) * k + 24.) / 24.;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
Poly_1D::CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
|
||||
Poly_1D::CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
|
||||
Poly_1D::CalcLegendre(p, x, shape_x.GetData(), dshape_x.GetData());
|
||||
Poly_1D::CalcLegendre(p, y, shape_y.GetData(), dshape_y.GetData());
|
||||
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0),
|
||||
z, 1.0,
|
||||
shape_z, dshape_z, dshape_z_dt);
|
||||
int o = 0;
|
||||
for (int i = 0; i <= p; i++)
|
||||
{
|
||||
for (int j = 0; j <= p; j++)
|
||||
{
|
||||
int maxij = std::max(i, j);
|
||||
FuentesPyramid::CalcScaledJacobi(p-maxij, 2.0 * (maxij + 1.0), z, 1.0,
|
||||
shape_z, dshape_z, dshape_z_dt);
|
||||
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
{
|
||||
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
|
||||
pow(1.0 - ip.z, maxij) +
|
||||
(ip.x * dshape_x(i) * shape_y(j) +
|
||||
ip.y * shape_x(i) * dshape_y(j)) *
|
||||
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
|
||||
maxij * shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
(maxij > 0 ? pow(1.0 - ip.z, maxij - 1) : 0.0);
|
||||
}
|
||||
for (int k = 0; k <= p - maxij; k++, o++)
|
||||
{
|
||||
du(o,0) = dshape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,1) = shape_x(i) * dshape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1);
|
||||
du(o,2) = shape_x(i) * shape_y(j) * dshape_z(k) *
|
||||
pow(1.0 - ip.z, maxij) +
|
||||
(ip.x * dshape_x(i) * shape_y(j) +
|
||||
ip.y * shape_x(i) * dshape_y(j)) *
|
||||
shape_z(k) * pow(1.0 - ip.z, maxij - 2) -
|
||||
((maxij > 0) ? (maxij * shape_x(i) * shape_y(j) * shape_z(k) *
|
||||
pow(1.0 - ip.z, maxij - 1)) : 0.0);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Ti.Mult(du, dshape);
|
||||
}
|
||||
|
||||
|
||||
@@ -225,8 +225,6 @@ private:
|
||||
#endif
|
||||
DenseMatrixInverse Ti;
|
||||
|
||||
static constexpr real_t apex_tol = 1e-8;
|
||||
|
||||
public:
|
||||
/// Construct the L2_PyramidElement of order @a p and BasisType @a btype
|
||||
L2_BergotPyramidElement(const int p,
|
||||
|
||||
+5
-42
@@ -1282,49 +1282,12 @@ ND_SegmentElement::ND_SegmentElement(const int p, const int ob_type)
|
||||
}
|
||||
}
|
||||
|
||||
void ND_SegmentElement::CalcShape(const IntegrationPoint &ip,
|
||||
Vector &shape) const
|
||||
{
|
||||
if (obasis1d.IsIntegratedType()) { obasis1d.ScaleIntegrated(false); }
|
||||
obasis1d.Eval(ip.x, shape);
|
||||
}
|
||||
|
||||
void ND_SegmentElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
Vector vshape(shape.Data(), dof);
|
||||
|
||||
CalcShape(ip, vshape);
|
||||
}
|
||||
|
||||
void ND_SegmentElement::ProjectIntegrated(VectorCoefficient &vc,
|
||||
ElementTransformation &Trans,
|
||||
Vector &dofs) const
|
||||
{
|
||||
MFEM_ASSERT(obasis1d.IsIntegratedType(), "Not integrated type");
|
||||
real_t vk[Geometry::MaxDim];
|
||||
Vector xk(vk, vc.GetVDim());
|
||||
|
||||
const real_t *cp = poly1d.ClosedPoints(dof, BasisType::GaussLobatto);
|
||||
const IntegrationRule &ir = IntRules.Get(Geometry::SEGMENT, dof);
|
||||
IntegrationPoint ip;
|
||||
|
||||
for (int i = 0; i < dof; i++)
|
||||
{
|
||||
const real_t h = cp[i+1] - cp[i];
|
||||
real_t val = 0.0;
|
||||
|
||||
for (int q = 0; q < ir.GetNPoints(); q++)
|
||||
{
|
||||
const IntegrationPoint &ip1d = ir.IntPoint(q);
|
||||
ip.x = cp[i] + h*ip1d.x;
|
||||
Trans.SetIntPoint(&ip);
|
||||
vc.Eval(xk, Trans, ip);
|
||||
val += ip1d.weight*Trans.Jacobian().InnerProduct(tk, vk);
|
||||
}
|
||||
|
||||
dofs(i) = val*h;
|
||||
}
|
||||
obasis1d.Eval(ip.x, vshape);
|
||||
}
|
||||
|
||||
const real_t ND_WedgeElement::tk[15] =
|
||||
@@ -2568,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
|
||||
|
||||
ND_R1D_PointElement::ND_R1D_PointElement(int p)
|
||||
: VectorFiniteElement(1, Geometry::POINT, 2, p,
|
||||
H_CURL_R1D, FunctionSpace::Pk)
|
||||
H_CURL, FunctionSpace::Pk)
|
||||
{
|
||||
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
|
||||
// so we mimic a 1D element and then correct the dimension here.
|
||||
@@ -2599,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
|
||||
H_CURL_R1D, FunctionSpace::Pk),
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -2876,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -3060,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
|
||||
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *tk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p,
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
tk(tk_fe),
|
||||
dof_map(dof),
|
||||
dof2tk(dof)
|
||||
|
||||
+3
-16
@@ -303,7 +303,8 @@ public:
|
||||
/** @brief Construct the ND_SegmentElement of order @a p and open
|
||||
BasisType @a ob_type */
|
||||
ND_SegmentElement(const int p, const int ob_type = BasisType::GaussLegendre);
|
||||
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override;
|
||||
void CalcShape(const IntegrationPoint &ip, Vector &shape) const override
|
||||
{ obasis1d.Eval(ip.x, shape); }
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
void CalcVShape(ElementTransformation &Trans,
|
||||
@@ -324,10 +325,7 @@ public:
|
||||
using FiniteElement::Project;
|
||||
void Project(VectorCoefficient &vc,
|
||||
ElementTransformation &Trans, Vector &dofs) const override
|
||||
{
|
||||
if (obasis1d.IsIntegratedType()) { ProjectIntegrated(vc, Trans, dofs); }
|
||||
else { Project_ND(tk, dof2tk, vc, Trans, dofs); }
|
||||
}
|
||||
{ Project_ND(tk, dof2tk, vc, Trans, dofs); }
|
||||
void ProjectMatrixCoefficient(MatrixCoefficient &mc,
|
||||
ElementTransformation &T,
|
||||
Vector &dofs) const override
|
||||
@@ -340,11 +338,6 @@ public:
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &grad) const override
|
||||
{ ProjectGrad_ND(tk, dof2tk, fe, Trans, grad); }
|
||||
|
||||
protected:
|
||||
void ProjectIntegrated(VectorCoefficient &vc,
|
||||
ElementTransformation &Trans,
|
||||
Vector &dofs) const;
|
||||
};
|
||||
|
||||
class ND_WedgeElement : public VectorFiniteElement
|
||||
@@ -670,9 +663,6 @@ public:
|
||||
const int cb_type = BasisType::GaussLobatto,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 1; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -715,9 +705,6 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 3; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
using FiniteElement::CalcPhysCurlShape;
|
||||
|
||||
|
||||
@@ -557,101 +557,6 @@ H1Pos_TriangleElement::H1Pos_TriangleElement(const int p)
|
||||
}
|
||||
}
|
||||
|
||||
const DofToQuad &H1Pos_TriangleElement::GetRaggedTensorDofToQuad(
|
||||
const FiniteElement &fe, const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode,
|
||||
Array<DofToQuad*> &dof2quad_array)
|
||||
{
|
||||
DofToQuad *d2q = nullptr;
|
||||
MFEM_VERIFY(mode == DofToQuad::RAGGED_TENSOR, "invalid mode requested");
|
||||
|
||||
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
|
||||
#pragma omp critical (DofToQuad)
|
||||
#endif
|
||||
{
|
||||
for (int i = 0; i < dof2quad_array.Size(); i++)
|
||||
{
|
||||
d2q = dof2quad_array[i];
|
||||
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
|
||||
}
|
||||
if (!d2q)
|
||||
{
|
||||
d2q = new RaggedDofToQuad;
|
||||
const int ndof = fe.GetOrder() + 1; // verify
|
||||
const int nqpt = (int)floor(pow(ir.GetNPoints(), 1.0/fe.GetDim()) + 0.5);
|
||||
d2q->FE = &fe;
|
||||
d2q->IntRule = &ir;
|
||||
d2q->mode = mode;
|
||||
d2q->ndof = ndof;
|
||||
d2q->nqpt = nqpt;
|
||||
|
||||
RaggedDofToQuad *rd2q = static_cast<RaggedDofToQuad*>(d2q);
|
||||
rd2q->Ba1.SetSize(nqpt*ndof);
|
||||
// second component of ragged tensor basis, technically dof*(dof-1)/2 entries
|
||||
rd2q->Ba2.SetSize((int)nqpt*ndof*ndof);
|
||||
rd2q->Ba1t.SetSize(nqpt*ndof);
|
||||
rd2q->Ba2t.SetSize((int)nqpt*ndof*ndof);
|
||||
// stores first component of ragged tensor basis with order p-1, for gradients only
|
||||
rd2q->Ga1.SetSize(nqpt*(ndof -1));
|
||||
// stores second component of ragged tensor basis with order p-1
|
||||
rd2q->Ga2.SetSize(nqpt*(ndof-1)*(ndof -1));
|
||||
rd2q->Ga1t.SetSize(nqpt*(ndof -1));
|
||||
rd2q->Ga2t.SetSize(nqpt*(ndof-1)*(ndof -1));
|
||||
rd2q->lex_map.SetSize(ndof * ndof);
|
||||
Vector shape_a1(ndof), shape_a2(ndof * ndof);
|
||||
Vector shape_Ga1(ndof-1), shape_Ga2((ndof-1) * (ndof-1));
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
// The first 'nqpt' points in the first dimension 'ir' have the same x-coordinates as those
|
||||
// of the 1D rule (ie. (2,0) Gauss-Jacobi rule). The first 'nqpt' points in the second dimension
|
||||
// 'ir' have the same y-coordinates as those of the 1D rule for second dimension (i.e. (1,0)
|
||||
// Gauss-Jacobi rule). Additionally, the Bernstein PA algorithms expect evaluation of the
|
||||
// component 1D bases at the Stroud nodes pulled back to the unit square, so perform the pullback
|
||||
// on the fly.
|
||||
const real_t x = ir.IntPoint(i).x;
|
||||
const real_t y = ir.IntPoint(nqpt*i).y / (1.0 - ir.IntPoint(nqpt*i).x);
|
||||
|
||||
Poly_1D::CalcBernstein(ndof-1, x, shape_a1);
|
||||
Poly_1D::CalcBernstein(ndof-2, x, shape_Ga1);
|
||||
for (int j = 0; j < ndof; j++)
|
||||
{
|
||||
rd2q->Ba1t[i+nqpt*j] = rd2q->Ba1[j+ndof*i] = shape_a1(j);
|
||||
if (j < ndof-1)
|
||||
{
|
||||
rd2q->Ga1t[i+nqpt*j] = rd2q->Ga1[j+(ndof-1)*i] = shape_Ga1(j);
|
||||
Poly_1D::CalcBernstein(ndof-2-j, y, shape_Ga2);
|
||||
}
|
||||
|
||||
Poly_1D::CalcBernstein(ndof-1-j, y, shape_a2);
|
||||
for (int k = 0; k < ndof-j; k++)
|
||||
{
|
||||
rd2q->Ba2t[i + nqpt*(j + ndof*k)] = rd2q->Ba2[k + ndof*(j + ndof*i)] = shape_a2(
|
||||
k);
|
||||
if (j < ndof-1 && k < ndof-j-1)
|
||||
{
|
||||
rd2q->Ga2t[i + nqpt*(j + (ndof-1)*k)] = rd2q->Ga2[k + (ndof-1)*(j +
|
||||
(ndof-1)*i)] = shape_Ga2(k);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// stores the mapping from 2D Bernstein multi-index (i,j,p-i-j) to the
|
||||
// lexicographic DOF ordering
|
||||
for (int i = 0; i < ndof; i++)
|
||||
{
|
||||
for (int j = 0; j < ndof-i; j++)
|
||||
{
|
||||
int idx = ((2 * (ndof-1) + 3) - j) * j / 2 + i;
|
||||
rd2q->lex_map[j + ndof*i] = idx;
|
||||
}
|
||||
}
|
||||
dof2quad_array.Append(d2q);
|
||||
}
|
||||
}
|
||||
return *d2q;
|
||||
}
|
||||
|
||||
// static method
|
||||
void H1Pos_TriangleElement::CalcShape(
|
||||
const int p, const real_t l1, const real_t l2, real_t *shape)
|
||||
@@ -844,213 +749,6 @@ H1Pos_TetrahedronElement::H1Pos_TetrahedronElement(const int p)
|
||||
}
|
||||
}
|
||||
|
||||
const DofToQuad &H1Pos_TetrahedronElement::GetRaggedTensorDofToQuad(
|
||||
const FiniteElement &fe, const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode,
|
||||
Array<DofToQuad*> &dof2quad_array)
|
||||
{
|
||||
DofToQuad *d2q = nullptr;
|
||||
MFEM_VERIFY(mode == DofToQuad::RAGGED_TENSOR, "invalid mode requested");
|
||||
|
||||
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
|
||||
#pragma omp critical (DofToQuad)
|
||||
#endif
|
||||
{
|
||||
for (int i = 0; i < dof2quad_array.Size(); i++)
|
||||
{
|
||||
d2q = dof2quad_array[i];
|
||||
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
|
||||
}
|
||||
if (!d2q)
|
||||
{
|
||||
d2q = new RaggedDofToQuad;
|
||||
const int ndof = fe.GetOrder() + 1; // verify
|
||||
const int nqpt = (int)floor(pow(ir.GetNPoints(), 1.0/fe.GetDim()) + 0.5);
|
||||
const int basis_dim2d = ndof*(ndof+1) / 2;
|
||||
const int basis_dim3d = ndof*(ndof+1)*(ndof+2) / 6;
|
||||
const int basis_dim2d_diff = (ndof-1)*(ndof) / 2;
|
||||
const int basis_dim3d_diff = (ndof-1)*(ndof)*(ndof+1) / 6;
|
||||
d2q->FE = &fe;
|
||||
d2q->IntRule = &ir;
|
||||
d2q->mode = mode;
|
||||
d2q->ndof = ndof;
|
||||
d2q->nqpt = nqpt;
|
||||
|
||||
RaggedDofToQuad *rd2q = static_cast<RaggedDofToQuad*>(d2q);
|
||||
rd2q->Ba1.SetSize(nqpt * ndof);
|
||||
// second component of ragged tensor basis, technically dof*(dof-1)/2 entries
|
||||
rd2q->Ba2.SetSize(nqpt * basis_dim2d);
|
||||
// third component of ragged tensor basis, technically dof*(dof-1)/2 entries
|
||||
rd2q->Ba3.SetSize(nqpt * basis_dim3d);
|
||||
rd2q->Ba1t.SetSize(nqpt * ndof);
|
||||
rd2q->Ba2t.SetSize(nqpt * basis_dim2d);
|
||||
rd2q->Ba3t.SetSize(nqpt * basis_dim3d);
|
||||
// stores first component of ragged tensor basis with order p-1, for gradients only
|
||||
rd2q->Ga1.SetSize(nqpt * (ndof-1));
|
||||
// stores second component of ragged tensor basis with order p-1
|
||||
rd2q->Ga2.SetSize(nqpt * basis_dim2d_diff);
|
||||
// stores third component of ragged tensor basis with order p-1
|
||||
rd2q->Ga3.SetSize(nqpt * basis_dim3d_diff);
|
||||
rd2q->Ga1t.SetSize(nqpt * (ndof-1));
|
||||
rd2q->Ga2t.SetSize(nqpt * basis_dim2d_diff);
|
||||
rd2q->Ga3t.SetSize(nqpt * basis_dim3d_diff);
|
||||
rd2q->lex_map.SetSize(ndof * ndof * ndof);
|
||||
|
||||
rd2q->forward_map2d_diff.SetSize((ndof-1) * (ndof-1));
|
||||
rd2q->forward_map3d_diff.SetSize((ndof-1) * (ndof-1) * (ndof-1));
|
||||
rd2q->inverse_map2d_diff.SetSize(2 * basis_dim2d_diff);
|
||||
rd2q->inverse_map3d_diff.SetSize(3 * basis_dim3d_diff);
|
||||
|
||||
rd2q->forward_map2d_mass.SetSize(ndof * ndof);
|
||||
rd2q->forward_map3d_mass.SetSize(ndof * ndof * ndof);
|
||||
rd2q->inverse_map2d_mass.SetSize(2 * basis_dim2d);
|
||||
rd2q->inverse_map3d_mass.SetSize(2 * basis_dim3d);
|
||||
|
||||
// forward and inverse maps for multi-index to collpased 1d index for diffusion, can combine
|
||||
// these four loops, but need four idx's and clause for shorter diff loops
|
||||
int idx = 0;
|
||||
for (int i = 0; i < ndof-1; i++)
|
||||
{
|
||||
for (int j = 0; j < ndof-i-1; j++)
|
||||
{
|
||||
rd2q->forward_map2d_diff[j + (ndof-1)*i] = idx;
|
||||
rd2q->inverse_map2d_diff[2*idx] = i;
|
||||
rd2q->inverse_map2d_diff[1 + 2*idx] = j;
|
||||
idx++;
|
||||
}
|
||||
}
|
||||
|
||||
idx = 0;
|
||||
for (int k = 0; k < ndof-1; k++)
|
||||
{
|
||||
for (int j = 0; j < ndof-k-1; j++)
|
||||
{
|
||||
for (int i = 0; i < ndof-k-j-1; i++)
|
||||
{
|
||||
rd2q->forward_map3d_diff[k + (ndof-1)*(j + (ndof-1)*i)] = idx;
|
||||
rd2q->inverse_map3d_diff[3*idx] = i;
|
||||
rd2q->inverse_map3d_diff[1 + 3*idx] = j;
|
||||
rd2q->inverse_map3d_diff[2 + 3*idx] = k;
|
||||
idx++;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// forward and inverse maps for multi-index to collpased 1d index for mass
|
||||
idx = 0;
|
||||
for (int j = 0; j < ndof; j++)
|
||||
{
|
||||
for (int i = 0; i < ndof-j; i++)
|
||||
{
|
||||
rd2q->forward_map2d_mass[j + ndof*i] = idx;
|
||||
rd2q->inverse_map2d_mass[2*idx] = i;
|
||||
rd2q->inverse_map2d_mass[1 + 2*idx] = j;
|
||||
idx++;
|
||||
}
|
||||
}
|
||||
|
||||
idx = 0;
|
||||
for (int k = 0; k < ndof; k++)
|
||||
{
|
||||
for (int j = 0; j < ndof-k; j++)
|
||||
{
|
||||
for (int i = 0; i < ndof-k-j; i++)
|
||||
{
|
||||
rd2q->forward_map3d_mass[k + ndof*(j + ndof*i)] = idx;
|
||||
rd2q->inverse_map3d_mass[2*idx] = i;
|
||||
rd2q->inverse_map3d_mass[1 + 2*idx] = j;
|
||||
// d2q->inverse_map3d_mass[2 + 3*idx] = k;
|
||||
idx++;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Vector shape_a1(ndof), shape_a2(ndof * ndof), shape_a3(ndof * ndof * ndof);
|
||||
Vector shape_Ga1(ndof-1), shape_Ga2(ndof-1), shape_Ga3(ndof-1);
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
// The first 'nqpt' points in the first dimension 'ir' have the same x-coordinates as those
|
||||
// of the 1D rule (ie. (2,0) Gauss-Jacobi rule). The first 'nqpt' points in the second dimension
|
||||
// 'ir' have the same y-coordinates as those of the 1D rule for second dimension (i.e. (1,0)
|
||||
// Gauss-Jacobi rule). The first 'nqpt' points in the third dimension have the same z-coordinates
|
||||
// as those of the 1D rule for the third dimension (i.e. Gauss-Legendre rule). Additionally,
|
||||
// the Bernstein PA algorithms expect evaluation of the component 1D bases at the Stroud nodes
|
||||
// pulled back to the unit cube, so perform the pullback on the fly.
|
||||
const real_t x = ir.IntPoint(i).x;
|
||||
const real_t y = ir.IntPoint(nqpt*i).y / (1.0 - ir.IntPoint(nqpt*i).x);
|
||||
const real_t z = ir.IntPoint(nqpt*nqpt*i).z / (1.0 - ir.IntPoint(
|
||||
nqpt*nqpt*i).x - ir.IntPoint(nqpt*nqpt*i).y);
|
||||
Poly_1D::CalcBernstein(ndof-1, x, shape_a1);
|
||||
Poly_1D::CalcBernstein(ndof-2, x, shape_Ga1);
|
||||
for (int j = 0; j < ndof; j++)
|
||||
{
|
||||
rd2q->Ba1t[i+nqpt*j] = rd2q->Ba1[j+ndof*i] = shape_a1(j);
|
||||
if (j < ndof-1)
|
||||
{
|
||||
rd2q->Ga1t[i+nqpt*j] = rd2q->Ga1[j+(ndof-1)*i] = shape_Ga1(j);
|
||||
Poly_1D::CalcBernstein(ndof-2-j, y, shape_Ga2);
|
||||
}
|
||||
|
||||
Poly_1D::CalcBernstein(ndof-1-j, y, shape_a2);
|
||||
for (int k = 0; k < ndof-j; k++)
|
||||
{
|
||||
const int a_2d_mass = rd2q->forward_map2d_mass[k + ndof*j];
|
||||
rd2q->Ba2t[i + nqpt*a_2d_mass] = rd2q->Ba2[a_2d_mass + basis_dim2d*i] =
|
||||
shape_a2(
|
||||
k);
|
||||
if (j < ndof-1 && k < ndof-j-1)
|
||||
{
|
||||
const int a_2d_diff = rd2q->forward_map2d_diff[k + (ndof-1)*j];
|
||||
rd2q->Ga2t[i + nqpt*a_2d_diff] = rd2q->Ga2[a_2d_diff + basis_dim2d_diff*i] =
|
||||
shape_Ga2(k);
|
||||
Poly_1D::CalcBernstein(ndof-2-j-k, z, shape_Ga3);
|
||||
}
|
||||
|
||||
Poly_1D::CalcBernstein(ndof-1-j-k, z, shape_a3);
|
||||
for (int m = 0; m < ndof-j-k; m++)
|
||||
{
|
||||
const int a_3d_mass = rd2q->forward_map3d_mass[m + ndof*(k + ndof*j)];
|
||||
rd2q->Ba3t[i + nqpt*a_3d_mass] = rd2q->Ba3[a_3d_mass + basis_dim3d*i] =
|
||||
shape_a3(
|
||||
m);
|
||||
if (j < ndof-1 && k < ndof-j-1 && m < ndof-j-k-1)
|
||||
{
|
||||
// // collapsed 1D access
|
||||
// d2q->Ga3[i + nqpt*(m + d2q->offset3d[k + (ndof-1)*j])] = shape_Ga3(m);
|
||||
// collapsed 1D access with forward mapping
|
||||
const int a_3d_diff = rd2q->forward_map3d_diff[m + (ndof-1)*(k + (ndof-1)*j)];
|
||||
rd2q->Ga3t[i + nqpt*a_3d_diff] = rd2q->Ga3[a_3d_diff + basis_dim3d_diff*i] =
|
||||
shape_Ga3(m);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// stores the mapping from 3D Bernstein multi-index (i,j,k,p-i-j-k) to the
|
||||
// lexicographic DOF ordering
|
||||
int p = ndof - 1;
|
||||
for (int i = 0; i < ndof; i++)
|
||||
{
|
||||
for (int j = 0; j < ndof-i; j++)
|
||||
{
|
||||
for (int k = 0; k < ndof-i-j; k++)
|
||||
{
|
||||
int dof = (p+1)*(p+2)*(p+3) / 6;
|
||||
int tet = (p-k)*(p-k+1)*(p-k+2) / 6;
|
||||
int tri = (p+1-k-j)*(p+2-k-j)/2;
|
||||
int multi_idx = dof - tet - tri + i;
|
||||
rd2q->lex_map[k + ndof*(j + ndof*i)] = multi_idx;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q);
|
||||
}
|
||||
}
|
||||
return *d2q;
|
||||
}
|
||||
|
||||
// static method
|
||||
void H1Pos_TetrahedronElement::CalcShape(
|
||||
const int p, const real_t l1, const real_t l2, const real_t l3,
|
||||
|
||||
@@ -191,21 +191,6 @@ public:
|
||||
/// Construct the H1Pos_TriangleElement of order @a p
|
||||
H1Pos_TriangleElement(const int p);
|
||||
|
||||
const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const override
|
||||
{
|
||||
return (mode == DofToQuad::RAGGED_TENSOR) ?
|
||||
GetRaggedTensorDofToQuad(*this, ir, mode, dof2quad_array) :
|
||||
FiniteElement::GetDofToQuad(ir, mode);
|
||||
}
|
||||
|
||||
static const DofToQuad &GetRaggedTensorDofToQuad(
|
||||
const FiniteElement &fe, const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode,
|
||||
Array<DofToQuad*> &dof2quad_array);
|
||||
|
||||
const Array<int> &GetDofMap() const { return dof_map; }
|
||||
|
||||
// The size of shape is (p+1)(p+2)/2 (dof).
|
||||
static void CalcShape(const int p, const real_t x, const real_t y,
|
||||
real_t *shape);
|
||||
@@ -235,21 +220,6 @@ public:
|
||||
/// Construct the H1Pos_TetrahedronElement of order @a p
|
||||
H1Pos_TetrahedronElement(const int p);
|
||||
|
||||
const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const override
|
||||
{
|
||||
return (mode == DofToQuad::RAGGED_TENSOR) ?
|
||||
GetRaggedTensorDofToQuad(*this, ir, mode, dof2quad_array) :
|
||||
FiniteElement::GetDofToQuad(ir, mode);
|
||||
}
|
||||
|
||||
static const DofToQuad &GetRaggedTensorDofToQuad(
|
||||
const FiniteElement &fe, const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode,
|
||||
Array<DofToQuad*> &dof2quad_array);
|
||||
|
||||
const Array<int> &GetDofMap() const { return dof_map; }
|
||||
|
||||
// The size of shape is (p+1)(p+2)(p+3)/6 (dof).
|
||||
static void CalcShape(const int p, const real_t x, const real_t y,
|
||||
const real_t z, real_t *shape);
|
||||
|
||||
@@ -17,12 +17,6 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
struct ScalarPyramid
|
||||
{
|
||||
// Default basis type for H1 and L2 pyramids
|
||||
static inline int DefaultType = 1; // Bergot(0) or Fuentes(1)
|
||||
};
|
||||
|
||||
/** Base class for arbitrary order basis functions on pyramid-shaped elements
|
||||
|
||||
This base class provides a common class to store temporary vectors,
|
||||
|
||||
+3
-3
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
|
||||
H_DIV_R1D, FunctionSpace::Pk),
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
|
||||
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
{
|
||||
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
|
||||
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *nk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p + 1,
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
nk(nk_fe),
|
||||
dof_map(dof),
|
||||
dof2nk(dof)
|
||||
|
||||
+16
-12
@@ -73,11 +73,16 @@ public:
|
||||
void Project(const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &I) const override
|
||||
{ Project_RT(nk, dof2nk, fe, Trans, I); }
|
||||
// Gradient + rotation = Curl: H1 -> H(div)
|
||||
void ProjectGrad(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &grad) const override
|
||||
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, grad); }
|
||||
// Curl = Gradient + rotation: H1 -> H(div)
|
||||
void ProjectCurl(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const override
|
||||
{ ProjectCurl2D_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
|
||||
void GetFaceMap(const int face_id, Array<int> &face_map) const override;
|
||||
|
||||
@@ -143,7 +148,7 @@ public:
|
||||
void ProjectCurl(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const override
|
||||
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
|
||||
/// @brief Return the mapping from lexicographically ordered face DOFs to
|
||||
/// lexicographically ordered element DOFs corresponding to local face
|
||||
@@ -205,11 +210,16 @@ public:
|
||||
void Project(const FiniteElement &fe, ElementTransformation &Trans,
|
||||
DenseMatrix &I) const override
|
||||
{ Project_RT(nk, dof2nk, fe, Trans, I); }
|
||||
// Gradient + rotation = Curl: H1 -> H(div)
|
||||
void ProjectGrad(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &grad) const override
|
||||
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, grad); }
|
||||
// Curl = Gradient + rotation: H1 -> H(div)
|
||||
void ProjectCurl(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const override
|
||||
{ ProjectCurl2D_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
{ ProjectGrad_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
};
|
||||
|
||||
|
||||
@@ -264,7 +274,7 @@ public:
|
||||
void ProjectCurl(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const override
|
||||
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
};
|
||||
|
||||
class RT_WedgeElement : public VectorFiniteElement
|
||||
@@ -322,7 +332,7 @@ public:
|
||||
void ProjectCurl(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const override
|
||||
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
};
|
||||
|
||||
/** Arbitrary order H(Div) basis functions defined on pyramid-shaped elements
|
||||
@@ -418,7 +428,7 @@ public:
|
||||
virtual void ProjectCurl(const FiniteElement &fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &curl) const
|
||||
{ ProjectCurl3D_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
{ ProjectCurl_RT(nk, dof2nk, fe, Trans, curl); }
|
||||
|
||||
void CalcRawVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
@@ -500,9 +510,6 @@ public:
|
||||
RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -540,9 +547,6 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
|
||||
void CalcVShape(ElementTransformation &Trans,
|
||||
|
||||
+30
-88
@@ -228,19 +228,7 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
|
||||
}
|
||||
else if (!strncmp(name, "H1_", 3))
|
||||
{
|
||||
// Parse pyramid basis type if included in the name
|
||||
const char *pyr = strstr(name, "Pyr");
|
||||
if (pyr == NULL)
|
||||
{
|
||||
// Use default pyramid type elements
|
||||
fec = new H1_FECollection(atoi(name + 7), atoi(name + 3));
|
||||
}
|
||||
else
|
||||
{
|
||||
// Use specific pyramid type elements
|
||||
fec = new H1_FECollection(atoi(name + 7), atoi(name + 3),
|
||||
BasisType::GaussLobatto, atoi(pyr + 3));
|
||||
}
|
||||
fec = new H1_FECollection(atoi(name + 7), atoi(name + 3));
|
||||
}
|
||||
else if (!strncmp(name, "H1Pos_Trace_", 12))
|
||||
{
|
||||
@@ -257,44 +245,26 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
|
||||
}
|
||||
else if (!strncmp(name, "H1@", 3))
|
||||
{
|
||||
// Parse pyramid basis type if included in the name
|
||||
const char *pyr = strstr(name, "Pyr");
|
||||
if (pyr == NULL)
|
||||
{
|
||||
// Use default pyramid type elements
|
||||
fec = new H1_FECollection(atoi(name + 9), atoi(name + 5),
|
||||
BasisType::GetType(name[3]));
|
||||
}
|
||||
else
|
||||
{
|
||||
// Use specific pyramid type elements
|
||||
fec = new H1_FECollection(atoi(name + 9), atoi(name + 5),
|
||||
BasisType::GetType(name[3]),
|
||||
atoi(pyr + 3));
|
||||
}
|
||||
fec = new H1_FECollection(atoi(name + 9), atoi(name + 5),
|
||||
BasisType::GetType(name[3]));
|
||||
}
|
||||
else if (!strncmp(name, "L2", 2))
|
||||
else if (!strncmp(name, "L2_T", 4))
|
||||
fec = new L2_FECollection(atoi(name + 10), atoi(name + 6),
|
||||
atoi(name + 4));
|
||||
else if (!strncmp(name, "L2_", 3))
|
||||
{
|
||||
// Parse Map Type
|
||||
const int mtype = strstr(name, "Int") == NULL ?
|
||||
FiniteElement::VALUE : FiniteElement::INTEGRAL;
|
||||
|
||||
// Parse the base order
|
||||
const int p = atoi(strstr(name, "_P") + 2);
|
||||
|
||||
// Parse the mesh dimension
|
||||
const int dim = atoi(strstr(name, "D") - 1);
|
||||
|
||||
// Parse basis type if specified
|
||||
const char *t = strstr(name, "_T");
|
||||
const int btype = t == NULL ? BasisType::GaussLegendre : atoi(t + 2);
|
||||
|
||||
// Parse the pyramid type if specified
|
||||
const char *pyr = strstr(name, "Pyr");
|
||||
const int ptype = pyr == NULL ? 1 : atoi(pyr + 3);
|
||||
|
||||
// Create collection
|
||||
fec = new L2_FECollection(p, dim, btype, mtype, ptype);
|
||||
fec = new L2_FECollection(atoi(name + 7), atoi(name + 3));
|
||||
}
|
||||
else if (!strncmp(name, "L2Int_T", 7))
|
||||
{
|
||||
fec = new L2_FECollection(atoi(name + 13), atoi(name + 9),
|
||||
atoi(name + 7), FiniteElement::INTEGRAL);
|
||||
}
|
||||
else if (!strncmp(name, "L2Int_", 6))
|
||||
{
|
||||
fec = new L2_FECollection(atoi(name + 10), atoi(name + 6),
|
||||
BasisType::GaussLegendre,
|
||||
FiniteElement::INTEGRAL);
|
||||
}
|
||||
else if (!strncmp(name, "RT_Trace_", 9))
|
||||
{
|
||||
@@ -1739,10 +1709,9 @@ const int *RT1_3DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
|
||||
|
||||
|
||||
H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
|
||||
const int pyr_type)
|
||||
const int pyrtype)
|
||||
: FiniteElementCollection(p)
|
||||
, dim(dim)
|
||||
, p_type(pyr_type)
|
||||
{
|
||||
MFEM_VERIFY(p >= 1, "H1_FECollection requires order >= 1.");
|
||||
MFEM_VERIFY(dim >= 0 && dim <= 3, "H1_FECollection requires 0 <= dim <= 3.");
|
||||
@@ -1755,14 +1724,7 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
|
||||
{
|
||||
case BasisType::GaussLobatto:
|
||||
{
|
||||
if (pyr_type == ScalarPyramid::DefaultType)
|
||||
{
|
||||
snprintf(h1_name, 32, "H1_%dD_P%d", dim, p);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(h1_name, 32, "H1_%dD_P%d_Pyr%d", dim, p, pyr_type);
|
||||
}
|
||||
snprintf(h1_name, 32, "H1_%dD_P%d", dim, p);
|
||||
break;
|
||||
}
|
||||
case BasisType::Positive:
|
||||
@@ -1948,11 +1910,11 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
|
||||
H1_dof[Geometry::TETRAHEDRON] = (TriDof*pm3)/3;
|
||||
H1_dof[Geometry::CUBE] = QuadDof*pm1;
|
||||
H1_dof[Geometry::PRISM] = TriDof*pm1;
|
||||
if (pyr_type == 0 || b_type == BasisType::Positive)
|
||||
if (pyrtype == 0 || b_type == BasisType::Positive)
|
||||
{
|
||||
H1_dof[Geometry::PYRAMID] = pm2*pm1*(2*p-3)/6; // Bergot (JSC)
|
||||
}
|
||||
else if (pyr_type == 1)
|
||||
else if (pyrtype == 1)
|
||||
{
|
||||
H1_dof[Geometry::PYRAMID] = pm1*pm1*pm1; // Fuentes
|
||||
}
|
||||
@@ -1973,15 +1935,13 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype,
|
||||
new H1_TetrahedronElement(p, btype);
|
||||
H1_Elements[Geometry::CUBE] = new H1_HexahedronElement(p, btype);
|
||||
H1_Elements[Geometry::PRISM] = new H1_WedgeElement(p, btype);
|
||||
if (pyr_type == 0)
|
||||
if (pyrtype == 0)
|
||||
{
|
||||
H1_Elements[Geometry::PYRAMID] =
|
||||
new H1_BergotPyramidElement(p, btype);
|
||||
H1_Elements[Geometry::PYRAMID] = new H1_BergotPyramidElement(p, btype);
|
||||
}
|
||||
else
|
||||
{
|
||||
H1_Elements[Geometry::PYRAMID] =
|
||||
new H1_FuentesPyramidElement(p, btype);
|
||||
H1_Elements[Geometry::PYRAMID] = new H1_FuentesPyramidElement(p, btype);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -2188,7 +2148,6 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
|
||||
: FiniteElementCollection(p)
|
||||
, dim(dim)
|
||||
, m_type(map_type)
|
||||
, p_type(pyr_type)
|
||||
{
|
||||
MFEM_VERIFY(p >= 0, "L2_FECollection requires order >= 0.");
|
||||
|
||||
@@ -2204,25 +2163,10 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
|
||||
switch (btype)
|
||||
{
|
||||
case BasisType::GaussLegendre:
|
||||
if (pyr_type == ScalarPyramid::DefaultType)
|
||||
{
|
||||
snprintf(d_name, 32, "%s_%dD_P%d", prefix, dim, p);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(d_name, 32, "%s_%dD_P%d_Pyr%d", prefix, dim, p, pyr_type);
|
||||
}
|
||||
snprintf(d_name, 32, "%s_%dD_P%d", prefix, dim, p);
|
||||
break;
|
||||
default:
|
||||
if (pyr_type == ScalarPyramid::DefaultType)
|
||||
{
|
||||
snprintf(d_name, 32, "%s_T%d_%dD_P%d", prefix, btype, dim, p);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(d_name, 32, "%s_T%d_%dD_P%d_Pyr%d",
|
||||
prefix, btype, dim, p, pyr_type);
|
||||
}
|
||||
snprintf(d_name, 32, "%s_T%d_%dD_P%d", prefix, btype, dim, p);
|
||||
}
|
||||
|
||||
for (int g = 0; g < Geometry::NumGeom; g++)
|
||||
@@ -2341,13 +2285,11 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
|
||||
L2_Elements[Geometry::PRISM] = new L2_WedgeElement(p, btype);
|
||||
if (pyr_type == 0)
|
||||
{
|
||||
L2_Elements[Geometry::PYRAMID] =
|
||||
new L2_BergotPyramidElement(p, btype);
|
||||
L2_Elements[Geometry::PYRAMID] = new L2_BergotPyramidElement(p, btype);
|
||||
}
|
||||
else
|
||||
{
|
||||
L2_Elements[Geometry::PYRAMID] =
|
||||
new L2_FuentesPyramidElement(p, btype);
|
||||
L2_Elements[Geometry::PYRAMID] = new L2_FuentesPyramidElement(p, btype);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user