Compare commits

..
Author SHA1 Message Date
Socratis Petrides bc39660801 minor bug 2023-05-31 11:00:58 -07:00
Frank Wang a72cd6b7a8 remove comments 2023-04-07 18:43:48 -07:00
Frank Wang bcc308b263 fixing bugs 2023-04-07 18:43:09 -07:00
nychiang 23b5e402e3 clean code 2023-04-04 16:40:28 -07:00
nychiang ee0dd42064 code style 2023-04-04 12:14:57 -07:00
nychiang 39a78ff3df IPOPT in mfem 2023-04-04 00:09:53 -07:00
Frank Wang 20460cafda add bc 2023-03-31 10:57:16 -07:00
Frank Wang 2f188e9fcf fix bug 2023-03-29 10:29:51 -07:00
Frank Wang e772d71ecb update 2023-03-24 21:43:41 -07:00
Frank Wang d9c4cad220 latest update 2023-03-21 12:35:20 -07:00
Frank Wang 0c572d4779 comment out nodepair for now 2023-03-16 13:44:16 -07:00
Frank Wang 4320ad2272 adding things needed for Jacobian computation 2023-03-16 13:42:17 -07:00
Dylan Copeland 5c09d2b4c9 Added computation of face reference coordinates, as well as the global vertex indices corresponding to the corners of the face. 2023-03-15 20:16:36 -07:00
Dylan Copeland 65e75e271b Enabling an example with points outside domain 1. 2023-03-15 17:35:55 -07:00
Frank Wang f8e5fe77e6 update contact 2023-03-12 19:07:25 -07:00
Frank Wang 4ff880f0cf remove binary 2023-03-10 11:04:44 -08:00
Frank Wang a1f57a6375 adding x field 2023-03-10 10:28:01 -08:00
Dylan Copeland 5ffb605333 Fixing contact example. 2023-03-08 18:52:04 -08:00
Frank Wang f8ea695e13 add contactcpp 2023-03-08 12:02:01 -08:00
932 changed files with 22382 additions and 46468 deletions
+8 -14
View File
@@ -31,7 +31,7 @@ install:
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
- cmake -H. -Bbuild
# -DCMAKE_BUILD_TYPE=Release
- cmake --build build --target metis -j 4
- cmake --build build
- set METIS_PATH=%cd%
- cd ..
@@ -40,7 +40,7 @@ install:
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild
- cmake --build build -j 4
- cmake --build build
- cmake --build build --target install
- cd ../..
@@ -49,20 +49,14 @@ install:
# MFEM
before_build:
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
build_script:
- cmake --build build_parallel --config Debug -j 4
# - cmake --build build_serial --config Release -j 4
# - cmake --build build_serial --target exec --config Release -j 4
- cmake --build build_shared_serial --config Release -j 4
- cmake --build build_shared_serial --target exec --config Release -j 4
- cmake --build build_parallel --config Release -j 4
- cmake --build build_serial --config Release -j 4
- cmake --build build_serial --target exec --config Release -j 4
after_build:
# - cd build_serial
# - ctest -C Release --output-on-failure
# - cd ..
- cd build_shared_serial
- cd build_serial
- ctest -C Release --output-on-failure
+8 -17
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -74,19 +74,12 @@ jobs:
codecov: YES
- os: windows-latest
codecov: NO
- os: windows-latest
target: opt
mpi: par
config-opts: '-DBUILD_SHARED_LIBS=ON'
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: cmake
hypre-target: int32
# This option can be set to pass additional configuration options to
# the MFEM configuration command.
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
- os: ubuntu-latest
target: opt
codecov: NO
@@ -162,7 +155,7 @@ jobs:
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.4
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -171,7 +164,7 @@ jobs:
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.4
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -190,7 +183,7 @@ jobs:
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.4
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
@@ -217,7 +210,7 @@ jobs:
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.4
uses: mfem/github-actions/build-mfem@v2.2
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
@@ -229,7 +222,7 @@ jobs:
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
config-options: ${{ matrix.config-opts }}
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
library-only: ${{ matrix.target == 'dbg' }}
# Run checks (and only checks) on debug targets
@@ -263,15 +256,13 @@ jobs:
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && \
ctest --output-on-failure -C ${CTEST_CONFIG} || \
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.4
uses: mfem/github-actions/upload-coverage@v2.2
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
+4 -4
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -57,7 +57,7 @@ jobs:
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.4
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -72,14 +72,14 @@ jobs:
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.4
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.4
uses: mfem/github-actions/build-mfem@v2.2
with:
os: ${{ runner.os }}
target: opt
-70
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@@ -1,70 +0,0 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Sanitizer"
permissions:
actions: write
on:
push:
branches:
- master
- next
pull_request:
workflow_dispatch:
jobs:
Serial:
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
- name: MFEM Checkout
uses: actions/checkout@v3
with:
path: mfem
- name: MFEM Build
uses: mfem/github-actions/build-mfem@v2.4
with:
os: ${{ runner.os }}
target: opt
mpi: seq
hypre-dir: unused-hypre-dir
metis-dir: unused-metis-dir
mfem-dir: mfem
build-system: make
library-only: false
config-options:
CXX="clang++-14"
CXXFLAGS="-g -O1 -std=c++11
-fsanitize=address
-fno-omit-frame-pointer
-fsanitize-address-use-after-scope"
- name: MFEM Info
working-directory: mfem
run: make info
- name: MFEM Sanitize
working-directory: mfem
run:
ASAN_OPTIONS="detect_leaks=1,
strict_init_order=1,
strict_string_checks=1,
check_initialization_order=1,
detect_stack_use_after_return=1"
make test
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+13 -33
View File
@@ -21,15 +21,11 @@ CMakeFiles/
# Default install location
/mfem/
# Typical build directory
/build/
# Generated files in main directory, config/ and docs/
/deps.mk
config/_config.hpp
config/config.mk
config/sample-runs-build.log
config/user.cmake
config/user.mk
doc/CodeDocumentation.conf
doc/CodeDocumentation.html
@@ -122,9 +118,11 @@ examples/amgx/sol.gf
examples/amgx/mesh.*
examples/amgx/sol.*
examples/ginkgo/ex1
examples/ginkgo/refined.mesh
examples/ginkgo/sol.gf
examples/gingko/ex1
examples/gingko/refined.mesh
examples/gingko/sol.gf
examples/gingko/mesh.*
examples/gingko/sol.*
examples/hiop/ex9
examples/hiop/ex9p
@@ -133,6 +131,12 @@ examples/hiop/ex9-mesh.*
examples/hiop/ex9-init.*
examples/hiop/ex9-final.*
examples/ipopt/exContactBlockTL
examples/ipopt/exContactBlockTL.mesh
examples/ipopt/exContactBlockTL-mesh.*
examples/ipopt/exContactBlockTL-init.*
examples/ipopt/exContactBlockTL-final.*
examples/petsc/ex[1-69]p
examples/petsc/ex1[0-1]p
examples/petsc/mesh.*
@@ -150,8 +154,8 @@ examples/petsc/velocity.*
examples/petsc/elastic_energy.*
examples/petsc/mode_*
examples/pumi/ex[12]
examples/pumi/ex[16]p
examples/pumi/ex1
examples/pumi/ex[126]p
examples/pumi/refined.mesh
examples/pumi/sol.gf
examples/pumi/mesh.*
@@ -196,9 +200,6 @@ miniapps/gslib/field-diff
miniapps/gslib/field-interp
miniapps/gslib/findpts
miniapps/gslib/pfindpts
miniapps/gslib/schwarz_ex1
miniapps/gslib/schwarz_ex1p
miniapps/gslib/interpolated.gf
miniapps/meshing/mobius-strip
miniapps/meshing/klein-bottle
@@ -211,11 +212,9 @@ miniapps/meshing/trimmer
miniapps/meshing/reflector
miniapps/meshing/mesh-optimizer
miniapps/meshing/pmesh-optimizer
miniapps/meshing/pmesh-fitting
miniapps/meshing/minimal-surface
miniapps/meshing/pminimal-surface
miniapps/meshing/polar-nc
miniapps/meshing/mesh-quality
miniapps/meshing/mobius-strip.mesh
miniapps/meshing/klein-bottle.mesh
miniapps/meshing/toroid-*.mesh
@@ -252,7 +251,6 @@ miniapps/navier/navier_tgv
miniapps/navier/navier_shear
miniapps/navier/navier_3dfoc
miniapps/navier/navier_turbchan
miniapps/navier/navier_cht
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
@@ -318,28 +316,12 @@ miniapps/solvers/ParaView
miniapps/solvers/mesh.*
miniapps/solvers/sol.*
miniapps/hdiv-linear-solver/darcy
miniapps/hdiv-linear-solver/grad_div
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/multidomain/multidomain
miniapps/hooke/hooke
miniapps/dpg/diffusion
miniapps/dpg/pdiffusion
miniapps/dpg/convection-diffusion
miniapps/dpg/pconvection-diffusion
miniapps/dpg/acoustics
miniapps/dpg/pacoustics
miniapps/dpg/maxwell
miniapps/dpg/pmaxwell
miniapps/dpg/ParaView
miniapps/spde/generate_random_field
miniapps/spde/ParaView
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
@@ -352,8 +334,6 @@ tests/unit/tmop_pa_tests_*
tests/unit/ptmop_pa_tests_*
tests/unit/ceed_tests
tests/unit/debug_device_tests
tests/unit/parallel_in_serial.mesh
tests/unit/parallel_in_serial.gf
# Benchmark binaries
tests/benchmarks/bench_ceed
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+11 -7
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,10 +22,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -55,10 +57,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+6 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -47,10 +47,12 @@ setup_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+12 -8
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,11 +35,13 @@ setup:
(
date
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
# try every 5 seconds; we may want to add a counter for the number of
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/mfem-data.lock'"
date
@@ -67,10 +69,12 @@ setup:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -4
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,14 +14,14 @@ stages:
- build_and_test
- report
opt_mpi_cuda_xl_16_1_1_12:
opt_mpi_cuda_xl_16_1_1_8:
variables:
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
extends: .build_and_test_on_lassen
opt_mpi_cuda_hypre_cuda_xl:
variables:
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
extends: .build_and_test_on_lassen
# Jobs report
+10 -12
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -51,8 +51,6 @@ cleanup:
script:
- echo "BUILD_ROOT=${BUILD_ROOT}"
- rm -rf "${BUILD_ROOT}" || true
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
- make -C "${CI_PROJECT_DIR}" distclean
report_baseline:
extends: [.on_quartz]
@@ -68,10 +66,12 @@ report_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -82,14 +82,12 @@ report_baseline:
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
fi
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
>> ${rundir}/pipeline.txt
# We create an autotest-email.html file, because that's how we signal
# that there was an error / diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
fi
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
+20 -15
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -27,39 +27,44 @@ allocate_resource:
timeout: 6h
# GitLab jobs for the Quartz machine at LLNL
debug_ser_gcc_10:
debug_ser_gcc_4_9_3:
variables:
SPEC: "%gcc@10.3.1 +debug~mpi"
SPEC: "%gcc@4.9.3 +debug~mpi"
extends: .build_and_test_on_quartz
debug_par_gcc_10:
debug_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +debug+mpi"
SPEC: "%gcc@6.1.0 +debug~mpi"
extends: .build_and_test_on_quartz
opt_ser_gcc_10:
debug_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 ~mpi"
SPEC: "%gcc@6.1.0 +debug+mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10:
opt_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1"
SPEC: "%gcc@6.1.0 ~mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10_sundials:
opt_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +sundials"
SPEC: "%gcc@6.1.0"
extends: .build_and_test_on_quartz
opt_par_gcc_10_petsc:
opt_par_gcc_6_1_0_sundials:
variables:
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
SPEC: "%gcc@6.1.0 +sundials"
extends: .build_and_test_on_quartz
opt_par_gcc_10_pumi:
opt_par_gcc_6_1_0_petsc:
variables:
SPEC: "%gcc@10.3.1 +pumi"
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
extends: .build_and_test_on_quartz
opt_par_gcc_6_1_0_pumi:
variables:
SPEC: "%gcc@6.1.0 +pumi"
extends: .build_and_test_on_quartz
# Release
+29 -16
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -42,34 +42,47 @@ fi
# post
mkdir ${artifacts_path}
status=0
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
if [[ -s ${glob_err} ]]; then
echo "ERROR during ${BASELINE_TEST} execution"
echo "Here is the ${glob_err} file content"
if [[ -s ${glob_err} ]]
then
echo "ERROR during ${BASELINE_TEST} execution";
echo "Here is the ${glob_err} file content";
cat ${glob_err}
cp ${glob_err} ${artifacts_path}/${glob_err}
status=1
fi
if [[ -f ${base_patch} ]]; then
exit 1;
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
then
echo "Something went WRONG in ${BASELINE_TEST}:";
echo "Either ${base_patch} or ${base_out} should exists";
exit 1;
elif [[ -f ${base_patch} ]]
then
echo "${BASELINE_TEST}: Differences found, patch generated"
cp ${base_patch} ${artifacts_path}/${base_patch}
elif [[ -f ${base_out} ]]; then
elif [[ -f ${base_out} ]]
then
echo "${BASELINE_TEST}: Differences found, replacement file generated"
cp ${base_out} ${artifacts_path}/${base_out}
fi
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
# base_diff won't even exist if there is no difference.
if [[ -f ${base_diff} ]]; then
if [[ -f ${base_diff} ]]
then
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
cat ${base_diff}
cp ${base_diff} ${artifacts_path}/${base_diff}
status=1
# We create a .err file, because that's how we signal that there was a diff.
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
fi
if [[ $status -eq 0 ]]; then
if [[ ! -s ${base_diff} ]]
then
echo "${BASELINE_TEST}: PASSED"
true
else
echo "${BASELINE_TEST}: FAILED"
false
fi
exit $status
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+36 -103
View File
@@ -8,126 +8,61 @@
https://mfem.org
Version 4.5.3 (development)
Version 4.5.1 (development)
===========================
New and updated examples and miniapps
-------------------------------------
- Added a new miniapp, Mesh Quality, for evaluating mesh quality using size,
skewness, and aspect-ratio computed from the Jacobian of the transformation.
- Added a new miniapp for interface and boundary fitting to implicit domains
defined using level-set functions. See miniapps/meshing/pmesh-fitting.cpp
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
and parallel examples for diffusion, convection-diffusion, acoustics and
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
integrators are added in support of DPG systems: TraceIntegrator,
NormalTraceIntegrator and TangentTraceIntegrator.
- Added a new H(div) solvers miniapp in miniapps/hdiv-linear-solver,
demonstrating the use of a matrix-free saddle-point solver methodology,
suitable for high-order discretizations and for GPU acceleration. Examples
illustrating the solution of Darcy and grad-div problems are included.
- Added a random refinement option to the mesh-explorer miniapp to assist users
in experimenting with nonconforming meshes.
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
Meshing improvements
--------------------
- Added new methods in the Mesh class to set and get attributes on NURBS patches
and patch boundaries.
- Added HIP support to the SUNDIALS interface.
- TMOP improvement: added asymptotically-balanced compound metrics 90, 94, 328,
338. Added the tmop-metric-magnitude tool for tracking how metrics change
under geometric perturbations.
Discretization improvements
---------------------------
- Face restriction operators for Nedelec and Raviart-Thomas finite element
spaces are now supported through the ConformingFaceRestriction class.
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
- Added support for p-refined meshes in FindPointsGSLIB.
- Added radial basis functions and reproducing kernels as alternatives to
polynomial functions. These are accessed through the LocalKernelFECollection.
Linear and nonlinear solvers
----------------------------
- Updated interface to MUMPS direct solver to support multiple right-hand
sides, block low-rank compression, builds using 64-bit integers, and other
improvements.
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
This interface provides a serial (OpenMP shared memory) version of Pardiso for
use with SparseMatrix. This complements the existing parallel (MPI distributed
memory) version already available through the CPardiso MFEM integration.
Integrations, testing and documentation
---------------------------------------
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
Miscellaneous
-------------
- Improved lambda body debugging with the addition of mfem::forall functions.
These functions can take the place of the MFEM_FORALL macros, which have been
preserved for backwards compatibility.
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
in the fem/integ/ subdirectory.
Version 4.5.2, released on March 23, 2023
=========================================
- Added support for pyramids in non-conforming meshes. Currently only isotropic
refinement is supported in this case.
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
domain boundary.
- Added an option to auto-balance compound TMOP metrics.
- Added support for pyramids in Gmsh meshes.
- Fixed a bug in TMOP metric 301.
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
- Added an option to auto-balance compound TMOP metrics.
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
face-neighbor elements.
Discretization improvements
---------------------------
- TBD
- Added support for pyramids in Gmsh meshes.
Linear and nonlinear solvers
----------------------------
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection. See option 'D' in the menu.
New and updated examples and miniapps
-------------------------------------
- Added a new meshing miniapp, reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
- VisItDataCollection now correctly handles data collection names containing
underscores.
- The mesh-explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection objects. See option 'D' in the
main menu.
- Added support for shared Windows builds with MSVC through CMake.
Developers note: this enhancement is facilitated by the addition of the macro
MFEM_EXPORT, see config.hpp for more details on its usage.
Integrations, testing and documentation
---------------------------------------
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- The following integrations have updated minimum version requirements:
* RAJA >= 2022.10.3
Miscellaneous
-------------
- VisItDataCollection now correctly handles collection names containing
underscores.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with
VisItDataCollection::SetPadDigitsRank().
API changes
-----------
- The implicit cast methods of class Vector to 'double *' and 'const double *'
@@ -138,11 +73,6 @@ API changes
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
should be used instead.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with SetPadDigitsRank().
Version 4.5, released on October 22, 2022
=========================================
@@ -186,6 +116,9 @@ Discretization improvements
- Added a class CoefficientVector for efficient access of variable coefficient
values at quadrature points (in particular for GPU/device kernels).
- Added support for GridFunction::GetGradients() and
GriFunction::GetVectorGradient() on face-neighbor elements.
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
spatial Gaussian white noise.
+22 -56
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -13,7 +13,6 @@
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
# Version 3.8 or newer is required for direct CUDA support.
cmake_minimum_required(VERSION 3.8)
message(STATUS "CMake version: ${CMAKE_VERSION}")
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
"Path to optional user configuration file.")
@@ -25,11 +24,8 @@ set(CMAKE_CXX_EXTENSIONS OFF)
# Load user settings before the defaults - this way the defaults will not
# overwrite the user set options. If the user has not set all options, we still
# have the defaults.
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
if (USER_CONFIG_LOADED)
set(USER_CONFIG_LOADED "LOADED")
endif()
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
include("${USER_CONFIG}" OPTIONAL)
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
@@ -57,7 +53,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.5.3)
set(${PROJECT_NAME}_VERSION 4.5.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -82,7 +78,7 @@ if (MFEM_USE_CONDUIT OR
# * find_package(PETSc REQUIRED)
set(XSDK_ENABLE_C ON)
endif()
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
if (MFEM_USE_STRUMPACK)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
@@ -187,23 +183,6 @@ else()
set(MFEM_DEBUG OFF)
endif()
# Shared build on Windows
if (WIN32 AND BUILD_SHARED_LIBS)
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
"Automatically export symbols for shared Windows DLL build")
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
# the build directory, so that the .exe files can find the .dll files at
# runtime:
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
# Note: CMake tests are run from the build-tree sub-directory where the test
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
# work fine.
# Not strictly necessary:
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
endif()
# AMD HIP
if (MFEM_USE_HIP)
if (HIP_ARCH)
@@ -317,9 +296,6 @@ if (MFEM_USE_SUNDIALS)
if (MFEM_USE_CUDA)
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
endif()
if (MFEM_USE_HIP)
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
endif()
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
endif()
@@ -336,7 +312,6 @@ endif()
if (MFEM_USE_MUMPS)
if (MFEM_USE_MPI)
find_package(MUMPS REQUIRED mumps_common pord)
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
else()
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
endif()
@@ -429,6 +404,15 @@ if (MFEM_USE_HIOP)
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
endif()
# IpOpt optimizer
if (MFEM_USE_IPOPT)
find_package(IPOPT REQUIRED)
message(
STATUS
"IPOPT_INCLUDE_DIRS=${IPOPT_INCLUDE_DIRS}, IPOPT_LIBRARIES=${IPOPT_LIBRARIES}, IPOPT_DIR=${IPOPT_DIR}")
# find_package updates IPOPT_FOUND, IPOPT_INCLUDE_DIRS, IPOPT_LIBRARIES
endif()
# CoDiPack package
if (MFEM_USE_CODIPACK)
find_package(CODIPACK REQUIRED)
@@ -470,18 +454,12 @@ if (MFEM_USE_ADIOS2)
find_package(ADIOS2 REQUIRED)
endif()
# MKL CPardiso
if (MFEM_USE_MKL_CPARDISO)
if (MFEM_USE_MPI)
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
endif()
endif()
# MKL Pardiso
if (MFEM_USE_MKL_PARDISO)
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
endif()
# PARELAG
if (MFEM_USE_PARELAG)
find_package(PARELAG REQUIRED)
@@ -530,9 +508,9 @@ find_package(Threads REQUIRED)
# be before SuiteSparse.
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
NETCDF MPFR PUMI HIOP IPOPT POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
@@ -550,7 +528,6 @@ list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
@@ -606,19 +583,7 @@ target_include_directories(mfem
PUBLIC
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
# The INSTALL_INTERFACE is handled below
${TPL_INCLUDE_DIRS})
if (MFEM_USE_MPI)
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
endif()
endif()
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
@@ -630,7 +595,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
endif()
# Generate configuration file in the build directory: config/_config.hpp.
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
configure_file(
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
"${PROJECT_BINARY_DIR}/config/_config.hpp")
@@ -750,7 +714,7 @@ set(INSTALL_LIB_DIR lib
set(INSTALL_CMAKE_DIR lib/cmake/mfem
CACHE PATH "Relative path for installing cmake config files.")
target_include_directories(mfem BEFORE
target_include_directories(mfem
PUBLIC
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
@@ -802,8 +766,10 @@ endif()
# Install the configuration header files
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
${PROJECT_SOURCE_DIR}/config/config.hpp
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
RENAME config.hpp)
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
# Package the whole thing up nicely
+2 -3
View File
@@ -112,6 +112,7 @@ The MFEM source code has the following structure:
│ ├── caliper
│ ├── ginkgo
│ ├── hiop
│ ├── ipopt
│ ├── jupyter
│ ├── moonolith
│ ├── petsc
@@ -121,7 +122,6 @@ The MFEM source code has the following structure:
├── fem
│ ├── ceed
│ ├── fe
│ ├── integ
│ ├── lor
│ ├── moonolith
│ ├── qinterp
@@ -137,7 +137,6 @@ The MFEM source code has the following structure:
│ ├── common
│ ├── electromagnetics
│ ├── gslib
│ ├── hdiv-linear-solver
│ ├── hooke
│ ├── meshing
│ ├── mtop
@@ -211,7 +210,7 @@ device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
#### Utilities, building and documentation
+12 -6
View File
@@ -471,6 +471,9 @@ MFEM_USE_HIOP = YES/NO
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
HPC solver for nonlinear optimization problems.
MFEM_USE_IPOPT = YES/NO
Enable the usage of Ipopt in MFEM.
MFEM_USE_CODIPACK = YES/NO
Enable automatic differentiation using the CoDiPack library.
www.scicomp.uni-kl.de/codi/
@@ -628,13 +631,9 @@ The specific libraries and their options are:
both MPI and hypre.
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
for CUDA.
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
for HIP.
URL: http://computing.llnl.gov/projects/sundials/sundials-software
URL: http://computation.llnl.gov/projects/sundials/sundials-software
Options: SUNDIALS_OPT, SUNDIALS_LIB.
Versions: SUNDIALS >= 5.0.0,
SUNDIALS >= 5.4.0 for CUDA support, and
SUNDIALS >= 5.7.0 for HIP support.
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
@@ -742,6 +741,11 @@ The specific libraries and their options are:
Options: HIOP_OPT, HIOP_LIB.
Versions: HIOP >= 0.4.6.
- Ipopt (optional), used when MFEM_USE_IPOPT = YES.
URL: https://github.com/coin-or/Ipopt
Options: IPOPT_OPT, IPOPT_LIB.
Versions: IPOPT >= 3.14
- CoDiPack (optional), used with MFEM_USE_CODIPACK = YES
URL: https://www.scicomp.uni-kl.de/codi/
Options: CODIPACK_OPT
@@ -976,6 +980,7 @@ MFEM_USE_MPFR
MFEM_USE_ZLIB
MFEM_USE_PUMI
MFEM_USE_HIOP
MFEM_USE_IPOPT
MFEM_USE_CODIPACK
MFEM_USE_ADFORWARD
MFEM_USE_CUDA
@@ -1039,6 +1044,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
- POSIXCLOCKS
- PUMI
- HIOP
- IPOPT
- CoDiPack
- OCCA
- RAJA
+1 -1
View File
@@ -1,6 +1,6 @@
BSD 3-Clause License
Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
All rights reserved.
Redistribution and use in source and binary forms, with or without
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -36,6 +36,7 @@ set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
set(MFEM_USE_IPOPT @MFEM_USE_IPOPT@)
set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
@@ -55,8 +56,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
+62 -70
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -39,9 +39,6 @@
// Description of the git commit used to build MFEM.
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
#cmakedefine MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
#cmakedefine MFEM_USE_MPI
@@ -80,102 +77,100 @@
// Internal MFEM option: enable group/batch allocation for some small objects.
#cmakedefine MFEM_USE_MEMALLOC
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Enable MFEM functionality based on the SuiteSparse library.
#cmakedefine MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
#cmakedefine MFEM_USE_SUPERLU
#cmakedefine MFEM_USE_SUPERLU5
// Enable MFEM functionality based on the MUMPS library.
#cmakedefine MFEM_USE_MUMPS
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
// Enable MFEM functionality based on the STRUMPACK library.
#cmakedefine MFEM_USE_STRUMPACK
// Enable functionality based on the Ginkgo library.
// Enable functionality based on the Ginkgo library
#cmakedefine MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// Enable MFEM functionality based on the AmgX library
#cmakedefine MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable MFEM functionality based on the GnuTLS library
#cmakedefine MFEM_USE_GNUTLS
// Enable Sidre support.
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
#cmakedefine MFEM_USE_SIMD
// Enable FMS support.
#cmakedefine MFEM_USE_FMS
// Enable Conduit support.
#cmakedefine MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
#cmakedefine MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
#cmakedefine MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
#cmakedefine MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
#cmakedefine MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
#cmakedefine MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HIOP library.
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the GSLIB library
#cmakedefine MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
// Enable MFEM functionality based on the NetCDF library
#cmakedefine MFEM_USE_NETCDF
// Enable MFEM functionality based on the PETSc library
#cmakedefine MFEM_USE_PETSC
// Enable MFEM functionality based on the SLEPc library
#cmakedefine MFEM_USE_SLEPC
// Enable MFEM functionality based on the Sidre library
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes
#cmakedefine MFEM_USE_SIMD
// Enable MFEM functionality based on the FMS library
#cmakedefine MFEM_USE_FMS
// Enable MFEM functionality based on Conduit
#cmakedefine MFEM_USE_CONDUIT
// Enable MFEM functionality based on the PUMI library
#cmakedefine MFEM_USE_PUMI
// Enable MFEM functionality based on the Moonolith library
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HiOp library
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the Ipopt library
#cmakedefine MFEM_USE_IPOPT
// Build the GPU/CUDA-enabled version of the MFEM library.
// Requires a CUDA compiler (nvcc).
#cmakedefine MFEM_USE_CUDA
// Build the AMD GPU/HIP-enabled version of the MFEM library.
// Build the HIP-enabled version of the MFEM library.
// Requires a HIP compiler (hipcc).
#cmakedefine MFEM_USE_HIP
// Enable functionality based on the RAJA library.
// Enable MFEM functionality based on the RAJA library
#cmakedefine MFEM_USE_RAJA
// Enable functionality based on the OCCA library.
// Enable MFEM functionality based on the OCCA library
#cmakedefine MFEM_USE_OCCA
// Enable functionality based on the libCEED library.
// Enable MFEM functionality based on the libCEED library
#cmakedefine MFEM_USE_CEED
// Enable functionality based on the Caliper library.
#cmakedefine MFEM_USE_CALIPER
// Enable functionality based on the Algoim library.
#cmakedefine MFEM_USE_ALGOIM
// Enable functionality based on the Umpire library.
// Enable MFEM functionality based on the Umpire library
#cmakedefine MFEM_USE_UMPIRE
// Enable IO functionality based on the ADIOS2 library.
// Enable MFEM functionality based on the ADIOS2 library
#cmakedefine MFEM_USE_ADIOS2
// Enable MFEM functionality based on the Caliper library
#cmakedefine MFEM_USE_CALIPER
// Enable MFEM functionality based on the Algoim library
#cmakedefine MFEM_USE_ALGOIM
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Version of HYPRE used for building MFEM.
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
@@ -186,16 +181,13 @@
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
#cmakedefine MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
#cmakedefine MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
#cmakedefine MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
// Enable Enzyme for AD
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -11
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
# we only need HDF5 if Conduit was built with HDF5 support
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
"Additional packages required by Conduit.")
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
# MFEM's FindHDF5.cmake is not used.
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
endif()
include(MfemCmakeUtilities)
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
ADD_COMPONENT relay
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
ADD_COMPONENT blueprint
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+23
View File
@@ -0,0 +1,23 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Sets the following variables:
# - IPOPT_FOUND
# - IPOPT_INCLUDE_DIRS
# - IPOPT_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(IPOPT IPOPT IPOPT_DIR
"include" "IpTNLP.hpp"
"lib" "ipopt"
"Paths to headers required by IPOPT."
"Libraries required by IPOPT.")
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,27 +0,0 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - MKL_PARDISO_FOUND
# - MKL_PARDISO_LIBRARIES
# - MKL_PARDISO_INCLUDE_DIRS
if(NOT MKL_LIBRARY_DIR)
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
set(MKL_LIBRARY_DIR "lib/intel64")
endif()
include(MfemCmakeUtilities)
mfem_find_package(MKL_PARDISO MKL_PARDISO
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -18
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -11,9 +11,8 @@
# Sets the following variables:
# - MUMPS_FOUND
# - MUMPS_LIBRARIES
# - MUMPS_INCLUDE_DIRS
# - MUMPS_VERSION
# - MUMPS_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(MUMPS MUMPS MUMPS_DIR
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
"Libraries required by MUMPS."
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
${CMAKE_CURRENT_BINARY_DIR}/config
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
else()
message(FATAL_ERROR "Unable to determine MUMPS version.")
endif()
endif()
+6 -17
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,17 +14,11 @@
# - NETCDF_LIBRARIES
# - NETCDF_INCLUDE_DIRS
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
include(MfemCmakeUtilities)
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# We need to guard against the case where HDF5 was already found but without
# the HL extensions (in which case mfem_find_package will treat the package
@@ -41,11 +35,6 @@ mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
# The netcdf library will always be the first element of NETCDF_LIBRARIES
# and we need to insert after that library but before the hdf5 library, so
# position 1 is used
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
if (HDF5_C_LIBRARY_hdf5_hl)
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
if (NOT NetCDF_FIND_QUIETLY)
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
endif()
endif()
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
# is already added to NETCDF_LIBRARIES)
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
ADD_COMPONENT NVector_Cuda
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
ADD_COMPONENT NVector_Hip
"include" nvector/nvector_hip.h "lib" sundials_nvechip
ADD_COMPONENT NVector_ParHyp
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
ADD_COMPONENT NVector_Parallel
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
ADD_COMPONENT NVector_MPIPlusX
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+56 -35
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -103,6 +103,25 @@ macro(add_mfem_examples EXE_SRCS)
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
target_link_libraries(${EXE_NAME} mfem)
if (MFEM_USE_MPI)
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
# Language-specific include directories:
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endforeach(SRC_FILE)
endmacro()
@@ -153,6 +172,26 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
if (EXTRA_DEFINES_LIST)
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
endif()
# Handle the MPI separately
if (MFEM_USE_MPI)
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endmacro()
@@ -397,9 +436,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
break()
endif()
endforeach()
if (Required AND NOT ${ReqPack}_FOUND)
if (${Required} AND NOT ${ReqPack}_FOUND)
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
endif()
endif()
endif()
@@ -465,18 +504,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
endif()
get_target_property(IsImported ${TargetName} IMPORTED)
if (IsImported)
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
if (NOT ImportConfig)
set(ImportConfig RELEASE)
list(FIND ImpConfigs ${ImportConfig} _Index)
if (_Index EQUAL -1)
list(GET ImpConfigs 0 ImportConfig)
endif()
endif()
set(ImportConfigSuffix "_${ImportConfig}")
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
list(FIND ImpConfigs ${ImportConfig} _Index)
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
set(ImportConfig "NO_CONFIG")
set(ImportConfigSuffix "")
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
@@ -494,8 +529,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
else()
# Set _Pack_LIBS from the target properties for ImportConfig
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
INTERFACE_LINK_LIBRARIES)
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
get_target_property(_value ${TargetName} ${_prop})
if (_value)
list(APPEND _Pack_LIBS ${_value})
@@ -746,7 +780,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
endforeach()
endif()
set(AddInterfaceLinkLibs TRUE)
if ("${type}" STREQUAL "STATIC_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
@@ -768,27 +801,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
# The INTERFACE_LINK_LIBRARIES property is handled below.
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
set(AddInterfaceLinkLibs FALSE)
endif()
if (AddInterfaceLinkLibs)
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
if (Libs)
foreach(Lib ${Libs})
if (NOT (TARGET ${Lib}))
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
endif()
list(APPEND LinkOpts "${Lib}")
else()
mfem_get_target_options(${Lib} COpts LOpts)
list(APPEND CompileOpts ${COpts})
@@ -796,6 +813,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
endif()
endforeach()
endif()
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
endif()
# Other potentially relevant properties:
@@ -819,9 +843,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
endfunction(mfem_get_target_options)
@@ -848,7 +869,7 @@ function(mfem_export_mk_files)
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_IPOPT MFEM_USE_GSLIB MFEM_USE_CUDA
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
@@ -873,7 +894,7 @@ function(mfem_export_mk_files)
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
endforeach()
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
+3 -22
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@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,30 +30,11 @@
#endif
// Windows specific options
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
#ifdef _WIN32
#ifndef _USE_MATH_DEFINES
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
#define _USE_MATH_DEFINES
#endif
// Macro MFEM_EXPORT: this macro is used when declaring exported global
// variables and static class variables in public header files, e.g.:
// extern MFEM_EXPORT Geometry Geometries;
// static MFEM_EXPORT Device device_singleton;
// In cases where a class contains multiple static variables, instead of marking
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
// e.g.:
// class MFEM_EXPORT MemoryManager ...
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
// variable that needs MFEM_EXPORT does not have it. However, builds with
// optional external libraries are not tested and may require separate checks to
// determine the necessity of MFEM_EXPORT.
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
#ifdef mfem_EXPORTS
#define MFEM_EXPORT __declspec(dllexport)
#else
#define MFEM_EXPORT __declspec(dllimport)
#endif
#else
#define MFEM_EXPORT
#endif
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
// the following macro allows us to get M_PI and some needed functions, e.g.
+20 -23
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,18 +30,15 @@
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
// The absolute path of the MFEM source prefix.
// The absolute path of the MFEM source prefix
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
// The absolute path of the MFEM installation prefix.
// The absolute path of the MFEM installation prefix
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
// Description of the git commit used to build MFEM.
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
// #define MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
// #define MFEM_USE_MPI
@@ -91,7 +88,7 @@
// Enable MFEM functionality based on the SuiteSparse library.
// #define MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
// Enable MFEM functionality based on the SuperLU library.
// #define MFEM_USE_SUPERLU
// #define MFEM_USE_SUPERLU5
@@ -102,40 +99,40 @@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
// Enable MFEM features based on the Ginkgo library.
// Enable MFEM features based on the Ginkgo library
// #define MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// #define MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable secure socket streams based on the GNUTLS library
// #define MFEM_USE_GNUTLS
// Enable Sidre support.
// Enable Sidre support
// #define MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
// Enable the use of SIMD in the high performance templated classes
// #define MFEM_USE_SIMD
// Enable FMS support.
// Enable FMS support
// #define MFEM_USE_FMS
// Enable Conduit support.
// Enable Conduit support
// #define MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
// Enable functionality based on the NetCDF library (reading CUBIT files)
// #define MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
// Enable functionality based on the PETSc library
// #define MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
// Enable functionality based on the SLEPc library
// #define MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
// #define MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
// Enable MFEM functionality based on the PUMI library
// #define MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
@@ -144,7 +141,10 @@
// Enable MFEM functionality based on the HIOP library.
// #define MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the IPOPT library.
// #define MFEM_USE_IPOPT
// Enable MFEM functionality based on the GSLIB library
// #define MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
@@ -186,13 +186,10 @@
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
// #define MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
// #define MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
// #define MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
+2 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -46,6 +46,7 @@ MFEM_USE_FMS = @MFEM_USE_FMS@
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
MFEM_USE_PUMI = @MFEM_USE_PUMI@
MFEM_USE_HIOP = @MFEM_USE_HIOP@
MFEM_USE_IPOPT = @MFEM_USE_IPOPT@
MFEM_USE_GSLIB = @MFEM_USE_GSLIB@
MFEM_USE_CUDA = @MFEM_USE_CUDA@
MFEM_USE_HIP = @MFEM_USE_HIP@
@@ -57,7 +58,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
+11 -12
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
endif()
# MFEM options. Set to mimic the default "defaults.mk" file.
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
@@ -49,6 +48,7 @@ option(MFEM_USE_FMS "Enable FMS usage" OFF)
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
option(MFEM_USE_PUMI "Enable PUMI" OFF)
option(MFEM_USE_HIOP "Enable HiOp" OFF)
option(MFEM_USE_IPOPT "Enable Ipopt" OFF)
option(MFEM_USE_CUDA "Enable CUDA" OFF)
option(MFEM_USE_HIP "Enable HIP" OFF)
option(MFEM_USE_OCCA "Enable OCCA" OFF)
@@ -60,7 +60,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
@@ -135,18 +134,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
"Additional packages required by ParMETIS.")
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
"Path to the SuperLU_DIST library.")
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
"LAPACK" "BLAS" CACHE STRING
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
"Additional packages required by SuperLU_DIST.")
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
"Path to the MUMPS library.")
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
# Packages required by MUMPS, depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
"Additional packages required by MUMPS.")
# If the MPI package does not find all required Fortran libraries:
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -224,13 +221,15 @@ set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
"Directory where HiOp is installed")
set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that HiOp depends on.")
set(IPOPT_DIR "${MFEM_DIR}/../ipopt/install" CACHE STRING
"Directory where IpOpt is installed")
set(IPOPT_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that IpOpt depends on.")
set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
+12 -17
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
# gfx900, gfx1010, etc.
HIP_ARCH = gfx900
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
HIP_XCOMPILER =
HIP_XLINKER = -Wl,
@@ -148,6 +148,7 @@ MFEM_USE_FMS = NO
MFEM_USE_CONDUIT = NO
MFEM_USE_PUMI = NO
MFEM_USE_HIOP = NO
MFEM_USE_IPOPT = NO
MFEM_USE_GSLIB = NO
MFEM_USE_CUDA = NO
MFEM_USE_HIP = NO
@@ -160,7 +161,6 @@ MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_MKL_PARDISO = NO
MFEM_USE_MOONOLITH = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
@@ -267,9 +267,6 @@ endif
ifeq ($(MFEM_USE_CUDA),YES)
SUNDIALS_LIB += -lsundials_nveccuda
endif
ifeq ($(MFEM_USE_HIP),YES)
SUNDIALS_LIB += -lsundials_nvechip
endif
# If SUNDIALS was built with KLU:
# MFEM_USE_SUITESPARSE = YES
@@ -288,10 +285,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
-lsuperlu_dist_5.1.0
else
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
-lsuperlu_dist $(LAPACK_LIB)
-lsuperlu_dist -lblas
endif
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
@@ -315,7 +312,7 @@ MPI_FORTRAN_LIB = -lmpifort
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
MUMPS_OPT = -I$(MUMPS_DIR)/include
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
@@ -451,6 +448,11 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
HIOP_OPT = -I$(HIOP_DIR)/include
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
# IPOPT
IPOPT_DIR = @MFEM_DIR@/../ipopt/install
IPOPT_OPT = -I$(IPOPT_DIR)/include
IPOPT_LIB = -L$(IPOPT_DIR)/lib -lipopt $(LAPACK_LIB)
# CoDiPack
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
CODIPACK_OPT = -I$(CODIPACK_DIR)
@@ -488,6 +490,7 @@ ifdef GOTCHA_DIR
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
endif
# BLITZ library configuration
BLITZ_DIR = @MFEM_DIR@/../blitz
BLITZ_OPT = -I$(BLITZ_DIR)/include
@@ -542,14 +545,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# MKL Pardiso library configuration
MKL_PARDISO_DIR ?=
MKL_LIBRARY_SUBDIR ?= lib
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# PARELAG library configuration
PARELAG_DIR = @MFEM_DIR@/../parelag
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
+1 -1
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@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
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@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+3 -3
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@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
# copyright check
copyright=true
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^3]\|[^2].\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2023:"
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2022:"
cat matches.txt
copyright=false
fi
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+11 -3
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@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,6 +58,10 @@ groups_serial=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp"'
'"ipopt"
"IpOpt examples:"
"examples/ipopt"
"ex10.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -138,7 +142,7 @@ groups_parallel=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
"pmesh-optimizer.cpp pminimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
@@ -215,6 +219,10 @@ groups_all=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp ex9p.cpp"'
'"ipopt"
"IpOpt examples:"
"examples/ipopt"
"ex10.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -227,7 +235,7 @@ groups_all=(
"Meshing miniapps:"
"miniapps/meshing"
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
+1 -1
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@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
-46
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@@ -1,46 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
1
1 1 0 1
boundary
2
1 0 0
2 0 1
edges
1
0 0 1
vertices
2
knotvectors
1
1 2 0 0 1 1
weights
1
1
FiniteElementSpace
FiniteElementCollection: NURBS1
VDim: 1
Ordering: 1
0
1
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -6
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@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = v4.5.3
PROJECT_NUMBER = v4.5.1
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
@@ -785,6 +785,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/examples/caliper \
@MFEM_SOURCE_DIR@/examples/ginkgo \
@MFEM_SOURCE_DIR@/examples/hiop \
@MFEM_SOURCE_DIR@/examples/ipopt \
@MFEM_SOURCE_DIR@/examples/moonolith \
@MFEM_SOURCE_DIR@/examples/petsc \
@MFEM_SOURCE_DIR@/examples/pumi \
@@ -795,7 +796,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/common \
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
@MFEM_SOURCE_DIR@/miniapps/gslib \
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
@MFEM_SOURCE_DIR@/miniapps/hooke \
@MFEM_SOURCE_DIR@/miniapps/hooke/kernels \
@MFEM_SOURCE_DIR@/miniapps/hooke/materials \
@@ -811,10 +811,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/shifted \
@MFEM_SOURCE_DIR@/miniapps/solvers \
@MFEM_SOURCE_DIR@/miniapps/tools \
@MFEM_SOURCE_DIR@/miniapps/toys \
@MFEM_SOURCE_DIR@/miniapps/spde \
@MFEM_SOURCE_DIR@/miniapps/dpg \
@MFEM_SOURCE_DIR@/miniapps/dpg/util
@MFEM_SOURCE_DIR@/miniapps/toys
# This tag can be used to specify the character encoding of the source files
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
+2 -6
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@@ -39,7 +39,7 @@ namespace mfem {
* - Device
* - Memory
* - MemoryManager
* - mfem::forall functions in forall.hpp
* - MFEM_FORALL macro in forall.hpp
*
* <H3>Example codes</H3>
* - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
@@ -186,7 +186,6 @@ namespace mfem {
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
* - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
* - <a class="el" href="mesh-quality_8cpp_source.html">Mesh Quality</a>: visualize and check mesh quality
* - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
* - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
* - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
@@ -199,15 +198,12 @@ namespace mfem {
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
* - <a class="el" href="extrapolate_8cpp_source.html">Extrapolation</a>: PDE-based extrapolation of finite element functions
* - <a class="el" href="block-solvers_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
* - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
* - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
*
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
*/
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+6 -10
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -161,15 +161,6 @@ if (MFEM_ENABLE_TESTING)
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
${MPIEXEC_POSTFLAGS})
endif()
# If MUMPS is enabled, add a test run that uses it.
if (MFEM_USE_MUMPS)
add_test(NAME ex25p_mumps_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
${MPIEXEC_POSTFLAGS})
endif()
endif()
# Include the examples/amgx directory if AmgX is enabled
@@ -187,6 +178,11 @@ if (MFEM_USE_HIOP)
add_subdirectory(hiop)
endif()
# Include the examples/ipopt directory if IpOpt is enabled
if (MFEM_USE_IPOPT)
add_subdirectory(ipopt)
endif()
# Include the examples/petsc directory if PETSc is enabled.
if (MFEM_USE_PETSC)
add_subdirectory(petsc)
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+810
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@@ -0,0 +1,810 @@
// Contact example
//
// Compile with: make contact
//
// Sample runs: ./contact -m1 block1.mesh -m2 block2.mesh -at "5 6 7 8"
// Sample runs: ./contact -m1 block1_d.mesh -m2 block2_d.mesh -at "5 6 7 8"
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include "nodepair.hpp"
using namespace std;
using namespace mfem;
bool ifequalarray(const Array<int> a1, const Array<int> a2)
{
if (a1.Size()!=a2.Size())
{
return false;
}
for (int i=0; i<a1.Size(); i++)
{
if (a1[i] != a2[i])
{
return false;
}
}
return true;
}
void FindSurfaceToProject(Mesh& mesh, const int elem, int& cbdrface)
{
Array<int> attr;
attr.Append(2);
Array<int> faces;
Array<int> ori;
std::vector<Array<int> > facesVertices;
std::vector<int > faceid;
mesh.GetElementFaces(elem, faces, ori);
int face = -1;
for (int i=0; i<faces.Size(); i++)
{
face = faces[i];
Array<int> faceVert;
if (!mesh.FaceIsInterior(face)) // if on the boundary
{
mesh.GetFaceVertices(face, faceVert);
faceVert.Sort();
facesVertices.push_back(faceVert);
faceid.push_back(face);
}
}
int bdrface = facesVertices.size();
Array<int> bdryFaces;
// This shoulnd't need to be rebuilt
std::vector<Array<int> > bdryVerts;
for (int b=0; b<mesh.GetNBE(); ++b)
{
if (attr.FindSorted(mesh.GetBdrAttribute(b)) >= 0) // found the contact surface
{
bdryFaces.Append(b);
Array<int> vert;
mesh.GetBdrElementVertices(b, vert);
vert.Sort();
bdryVerts.push_back(vert);
}
}
int bdrvert = bdryVerts.size();
cbdrface = -1; // the face number of the contact surface element
int count_cbdrface = 0; // the number of matching surfaces, used for checks
for (int i=0; i<bdrface; i++)
{
for (int j=0; j<bdrvert; j++)
{
if (ifequalarray(facesVertices[i], bdryVerts[j]))
{
cbdrface = faceid[i];
count_cbdrface += 1;
}
}
}
MFEM_VERIFY(count_cbdrface == 1,"projection surface not found");
};
Vector GetNormalVector(Mesh & mesh, const int elem, const double *ref,
int & refFace, int & refNormal, bool & interior)
{
ElementTransformation *trans = mesh.GetElementTransformation(elem);
const int dim = mesh.Dimension();
const int spaceDim = trans->GetSpaceDim();
MFEM_VERIFY(spaceDim == 3, "");
Vector n(spaceDim);
IntegrationPoint ip;
ip.Set(ref, dim);
trans->SetIntPoint(&ip);
//CalcOrtho(trans->Jacobian(), n); // Works only for face transformations
const DenseMatrix jac = trans->Jacobian();
int dimNormal = -1;
int normalSide = -1;
const double tol = 1.0e-8;
for (int i=0; i<dim; ++i)
{
const double d0 = std::abs(ref[i]);
const double d1 = std::abs(ref[i] - 1.0);
const double d = std::min(d0, d1);
// TODO: this works only for hexahedral meshes!
if (d < tol)
{
MFEM_VERIFY(dimNormal == -1, "");
dimNormal = i;
if (d0 < tol)
{
normalSide = 0;
}
else
{
normalSide = 1;
}
}
}
// closest point on the boundary
if (dimNormal < 0 || normalSide < 0) // node is inside the element
{
interior = 1;
Vector n(3);
n = 0.0;
return n;
}
MFEM_VERIFY(dimNormal >= 0 && normalSide >= 0, "");
refNormal = dimNormal;
MFEM_VERIFY(dim == 3, "");
{
// Find the reference face
if (dimNormal == 0)
{
refFace = (normalSide == 1) ? 2 : 4;
}
else if (dimNormal == 1)
{
refFace = (normalSide == 1) ? 3 : 1;
}
else
{
refFace = (normalSide == 1) ? 5 : 0;
}
}
std::vector<Vector> tang(2);
int tangDir[2] = {-1, -1};
{
int t = 0;
for (int i=0; i<dim; ++i)
{
if (i != dimNormal)
{
tangDir[t] = i;
t++;
}
}
MFEM_VERIFY(t == 2, "");
}
for (int i=0; i<2; ++i)
{
tang[i].SetSize(3);
Vector tangRef(3);
tangRef = 0.0;
tangRef[tangDir[i]] = 1.0;
jac.Mult(tangRef, tang[i]);
}
Vector c(3); // Cross product
c[0] = (tang[0][1] * tang[1][2]) - (tang[0][2] * tang[1][1]);
c[1] = (tang[0][2] * tang[1][0]) - (tang[0][0] * tang[1][2]);
c[2] = (tang[0][0] * tang[1][1]) - (tang[0][1] * tang[1][0]);
c /= c.Norml2();
Vector nref(3);
nref = 0.0;
nref[dimNormal] = 1.0;
Vector ndir(3);
jac.Mult(nref, ndir);
ndir /= ndir.Norml2();
const double dp = ndir * c;
// TODO: eliminate c?
n = c;
if (dp < 0.0)
{
n *= -1.0;
}
interior = 0;
return n;
}
// WARNING: global variable, just for this little example.
std::array<std::array<int, 3>, 8> HEX_VERT =
{
{ {0,0,0},
{1,0,0},
{1,1,0},
{0,1,0},
{0,0,1},
{1,0,1},
{1,1,1},
{0,1,1}
}
};
int GetHexVertex(int cdim, int c, int fa, int fb, Vector & refCrd)
{
int ref[3];
ref[cdim] = c;
ref[cdim == 0 ? 1 : 0] = fa;
ref[cdim == 2 ? 1 : 2] = fb;
for (int i=0; i<3; ++i) { refCrd[i] = ref[i]; }
int refv = -1;
for (int i=0; i<8; ++i)
{
bool match = true;
for (int j=0; j<3; ++j)
{
if (ref[j] != HEX_VERT[i][j]) { match = false; }
}
if (match) { refv = i; }
}
MFEM_VERIFY(refv >= 0, "");
return refv;
}
// Coordinates in xyz are assumed to be ordered as [X, Y, Z]
// where X is the list of x-coordinates for all points and so on.
// conn: connectivity of the target surface elements
// xi: surface reference cooridnates for the cloest point, involves a linear transformation from [0,1] to [-1,1]
void FindPointsInMesh(Mesh & mesh, Vector const& xyz, Array<int>& conn,
Vector& xi)
{
const int dim = mesh.Dimension();
const int np = xyz.Size() / dim;
MFEM_VERIFY(np * dim == xyz.Size(), "");
mesh.EnsureNodes();
//FindPointsGSLIB finder(MPI_COMM_WORLD);
FindPointsGSLIB finder;
finder.SetDistanceToleranceForPointsFoundOnBoundary(0.5);
const double bb_t = 0.5;
finder.Setup(mesh, bb_t);
finder.FindPoints(xyz);
/// Return code for each point searched by FindPoints: inside element (0), on
/// element boundary (1), or not found (2).
Array<unsigned int> codes = finder.GetCode();
/// Return element number for each point found by FindPoints.
Array<unsigned int> elems = finder.GetElem();
/// Return reference coordinates for each point found by FindPoints.
Vector refcrd = finder.GetReferencePosition();
/// Return distance between the sought and the found point in physical space,
/// for each point found by FindPoints.
Vector dist = finder.GetDist();
MFEM_VERIFY(dist.Size() == np, "");
MFEM_VERIFY(refcrd.Size() == np * dim, "");
MFEM_VERIFY(elems.Size() == np, "");
MFEM_VERIFY(codes.Size() == np, "");
bool allfound = true;
for (auto code : codes)
if (code == 2) { allfound = false; }
MFEM_VERIFY(allfound, "A point was not found");
cout << "Maximum distance of projected points: " << dist.Max() << endl;
// extract information
for (int i=0; i<np; ++i)
{
/*cout << "Point " << i << ": (";
for (int j=0; j<dim; ++j)
{
cout << xyz[i + (j*np)];
if (j == dim-1) {cout << ")" << endl;}
else{cout << ", ";}
}*/
//cout << " element: " << elems[i] << endl;
//cout << " element " << elems[i] << " vertices:" << endl;
//Array<int> vert;
//mesh.GetElementVertices(elems[i], vert);
//for (auto v : vert)
//{
// cout << " " << v << endl;
//}
/*cout << " reference coordinates: (";
for (int j=0; j<dim; ++j)
{
cout << refcrd[(i*dim) + j];
if (j == dim-1)
{
cout << ")" << endl;
}
else
{
cout << ", ";
}
}*/
int refFace, refNormal, refNormalSide;
bool is_interior = -1;
Vector normal = GetNormalVector(mesh, elems[i], refcrd.GetData() + (i*dim),
refFace, refNormal, is_interior);
int phyFace;
if (is_interior)
{
phyFace = -1; // the id of the face that has the closest point
FindSurfaceToProject(mesh, elems[i], phyFace);
Array<int> cbdrVert;
mesh.GetFaceVertices(phyFace, cbdrVert);
Vector xs(dim);
xs[0] = xyz[i + 0*np];
xs[1] = xyz[i + 1*np];
xs[2] = xyz[i + 2*np];
Vector xi_tmp(dim-1);
// get nodes!
GridFunction *nodes = mesh.GetNodes();
DenseMatrix coords(4,3);
for (int i=0; i<4; i++)
{
for (int j=0; j<3; j++)
{
coords(i,j) = (*nodes)[cbdrVert[i]*3+j];
}
}
SlaveToMaster(coords, xs, xi_tmp);
for (int j=0; j<dim-1; ++j)
{
xi[i*(dim-1)+j] = xi_tmp[j];
}
// now get get the projection to the surface
}
else
{
Vector faceRefCrd(dim-1);
{
int fd = 0;
for (int j=0; j<dim; ++j)
{
if (j == refNormal)
{
refNormalSide = (refcrd[(i*dim) + j] > 0.5);
}
else
{
faceRefCrd[fd] = refcrd[(i*dim) + j];
fd++;
}
}
MFEM_VERIFY(fd == dim-1, "");
}
for (int j=0; j<dim-1; ++j)
{
xi[i*(dim-1)+j] = faceRefCrd[j]*2.0 - 1.0;
}
//cout << " face reference coordinates: (";
/*for (int j=0; j<dim-1; ++j)
{
cout << faceRefCrd[j];
if (j == dim-2){cout << ")" << endl;}
else{cout << ", ";}
}*/
}
//cout << " normal vector: ";
//normal.Print();
// ask, does this do anything?
/*
IntegrationPoint ip;
ip.Set(refcrd.GetData() + (i*dim), dim);
ElementTransformation *trans = mesh.GetElementTransformation(elems[i]);
Vector phys(trans->GetSpaceDim());
trans->Transform(ip, phys);
cout << " physical coordinates: ";
phys.Print();
*/
// Get the element face
Array<int> faces;
Array<int> ori;
int face;
if (is_interior)
{
face = phyFace;
}
else
{
mesh.GetElementFaces(elems[i], faces, ori);
face = faces[refFace];
}
Array<int> faceVert;
mesh.GetFaceVertices(face, faceVert);
//cout << " face " << face << " vertices:" << endl;
//for (auto v : faceVert){ cout << " " << v << endl;}
for (int p=0; p<4; p++)
{
conn[4*i+p] = faceVert[p];
}
/*
Vector ref(dim);
for (int p=0; p<2; ++p)
for (int q=0; q<2; ++q)
{
const int refv = GetHexVertex(refNormal, refNormalSide, p, q, ref);
cout << " face reference vertex (" << p << "," << q
<< ") is global vertex " << vert[refv] << endl;
{
// Sanity check
ip.Set(ref.GetData(), dim);
trans->Transform(ip, phys);
for (int j=0; j<dim; ++j)
{
phys[j] -= mesh.GetVertex(vert[refv])[j];
}
phys.Print();
cout<<vert[refv]<<endl;
cout<<mesh.GetVertex(vert[refv])[0]<<endl;
cout<<mesh.GetVertex(vert[refv])[1]<<endl;
cout<<mesh.GetVertex(vert[refv])[2]<<endl;
MFEM_VERIFY(phys.Norml2() < 1.0e-12, "Sanity check failed");
}
}*/
}
}
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file1 = "block1.mesh";
const char *mesh_file2 = "block2.mesh";
Array<int> attr;
Array<int> m_attr;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file1, "-m1", "--mesh1",
"First mesh file to use.");
args.AddOption(&mesh_file2, "-m2", "--mesh2",
"Second mesh file to use.");
args.AddOption(&attr, "-at", "--attributes-surf",
"Attributes of boundary faces on contact surface for mesh 2.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
Mesh mesh1(mesh_file1, 1, 1);
Mesh mesh2(mesh_file2, 1, 1);
{
char vishost[] = "localhost";
int visport = 19916;
socketstream mesh1a_sock(vishost, visport);
mesh1a_sock.precision(8);
mesh1a_sock << "mesh\n" << mesh1 << flush;
socketstream mesh2a_sock(vishost, visport);
mesh2a_sock.precision(8);
mesh2a_sock << "mesh\n" << mesh2 << flush;
}
const int dim = mesh1.Dimension();
MFEM_VERIFY(dim == mesh2.Dimension(), "");
// boundary attribute 2 is the potential contact surface of nodes
attr.Append(2);
// boundary attribute 2 is the potential contact surface for master surface
m_attr.Append(2);
// Define a finite element space on the mesh. Here we use vector finite
// elements, i.e. dim copies of a scalar finite element space. The vector
// dimension is specified by the last argument of the FiniteElementSpace
// constructor.
FiniteElementCollection *fec1;
FiniteElementSpace *fespace1;
fec1 = new H1_FECollection(1, dim);
fespace1 = new FiniteElementSpace(&mesh1, fec1, dim, Ordering::byVDIM);
cout << "Number of finite element unknowns for mesh1: "
<< fespace1->GetTrueVSize() << endl;
mesh1.SetNodalFESpace(fespace1);
GridFunction nodes0 = *mesh1.GetNodes(); // undeformed mesh1 nodal grid function
GridFunction *nodes1 = mesh1.GetNodes();
FiniteElementCollection *fec2 = new H1_FECollection(1, dim);
FiniteElementSpace *fespace2 = new FiniteElementSpace(&mesh2, fec2, dim,
Ordering::byVDIM);
cout << "Number of finite element unknowns for mesh2: "
<< fespace2->GetTrueVSize() << endl;
// degrees of freedom of both meshes
int ndof_1 = fespace1->GetTrueVSize();
int ndof_2 = fespace2->GetTrueVSize();
int ndofs = ndof_1 + ndof_2;
// number of nodes for each mesh
int nnd_1 = mesh1.GetNV();
int nnd_2 = mesh2.GetNV();
int nnd = nnd_1 + nnd_2;
// Determine the list of true (i.e. conforming) essential boundary dofs.
// In this example, the boundary conditions are defined by marking only
// boundary attribute 1 from the mesh as essential and converting it to a
// list of true dofs.
Array<int> ess_tdof_list1, ess_bdr1(mesh1.bdr_attributes.Max());
ess_bdr1 = 0;
//ess_bdr1[0] = 1;
// Not ready to be passed on yet
// fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
Array<int> ess_tdof_list2, ess_bdr2(mesh2.bdr_attributes.Max());
ess_bdr2 = 0;
//ess_bdr2[0] = 1;
// Define the displacement vector x as a finite element grid function
// corresponding to fespace. GridFunction is a derived class of Vector.
GridFunction x1(fespace1);
x1 = 0.0;
GridFunction x2(fespace2);
x2 = 0.0;
// Generate force
LinearForm *b1 = new LinearForm(fespace1);
b1->Assemble();
LinearForm *b2 = new LinearForm(fespace2);
b2->Assemble();
// Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
// constants coefficient lambda and mu.
Vector lambda1(mesh1.attributes.Max());
lambda1 = 57.6923076923;
PWConstCoefficient lambda1_func(lambda1);
Vector mu1(mesh1.attributes.Max());
mu1 = 38.4615384615;
PWConstCoefficient mu1_func(mu1);
BilinearForm *a1 = new BilinearForm(fespace1);
a1->AddDomainIntegrator(new ElasticityIntegrator(lambda1_func,mu1_func));
Vector lambda2(mesh2.attributes.Max());
lambda2 = 57.6923076923;
PWConstCoefficient lambda2_func(lambda2);
Vector mu2(mesh2.attributes.Max());
mu2 = 38.4615384615;
PWConstCoefficient mu2_func(mu2);
BilinearForm *a2 = new BilinearForm(fespace2);
a2->AddDomainIntegrator(new ElasticityIntegrator(lambda2_func,mu2_func));
a1->Assemble();
SparseMatrix A1;
Vector B1, X1;
a1->FormLinearSystem(ess_tdof_list1, x1, *b1, A1, X1, B1);
a2->Assemble();
SparseMatrix A2;
Vector B2, X2;
a2->FormLinearSystem(ess_tdof_list2, x2, *b2, A2, X2, B2);
// Combine elasticity operator for two meshes into one.
// Block Matrix
SparseMatrix K(ndofs,ndofs);
for (int i=0; i<A1.Height(); i++)
{
Array<int> col_tmp;
Vector v_tmp;
col_tmp = 0;
v_tmp = 0.0;
A1.GetRow(i, col_tmp, v_tmp);
K.SetRow(i, col_tmp, v_tmp);
}
for (int i=0; i<A2.Height(); i++)
{
Array<int> col_tmp;
Vector v_tmp;
col_tmp = 0;
v_tmp = 0.0;
A2.GetRow(i, col_tmp, v_tmp);
for (int j=0; j<col_tmp.Size(); j++)
{
col_tmp[j] += ndof_1;
}
K.SetRow(i+ndof_1, col_tmp, v_tmp); // mesh1 top left corner
}
// Construct node to segment contact constraint.
attr.Sort();
cout << "Boundary attributes for contact surface faces in mesh 2" << endl;
for (auto a : attr) { cout << a << endl; }
Array<int> bdryFaces2; // TODO: remove this?
std::set<int> bdryVerts2;
for (int b=0; b<mesh2.GetNBE(); ++b)
{
if (attr.FindSorted(mesh2.GetBdrAttribute(b)) >= 0)
{
bdryFaces2.Append(b);
Array<int> vert;
mesh2.GetBdrElementVertices(b, vert);
for (auto v : vert)
{
bdryVerts2.insert(v);
}
}
}
int npoints = bdryVerts2.size();
Array<int> s_conn(npoints); // connectivity of the second/slave mesh
Vector xyz(dim * npoints);
xyz = 0.0;
cout << "Boundary vertices for contact surface vertices in mesh 2" << endl;
// construct the nodal coordinates on mesh2 to be projected, including displacement
int count = 0;
for (auto v : bdryVerts2)
{
cout << v << ": " << mesh2.GetVertex(v)[0] << ", "
<< mesh2.GetVertex(v)[1] << ", "
<< mesh2.GetVertex(v)[2] << endl;
for (int i=0; i<dim; ++i)
{
xyz[count + (i * npoints)] = mesh2.GetVertex(v)[i] + x2[v*dim+i];
}
s_conn[count] = v + nnd_1; // dof1 is the master
count++;
}
MFEM_VERIFY(count == npoints, "");
// gap function
Vector g(npoints*dim);
g = -1.0;
// segment reference coordinates of the closest point
Vector m_xi(npoints*(dim-1));
m_xi = -1.0;
Vector xs(dim*npoints);
xs = 0.0;
for (int i=0; i<npoints; i++)
{
for (int j=0; j<dim; j++)
{
xs[i*dim+j] = xyz[i + (j*npoints)];
}
}
Array<int> m_conn(
npoints*4); // only works for linear elements that have 4 vertices!
DenseMatrix coordsm(npoints*4, dim);
// adding displacement to mesh1 using a fixed grid function from mesh1
x1 = 1e-4; // x1 order: [xyz xyz... xyz]
add(nodes0, x1, *nodes1);
FindPointsInMesh(mesh1, xyz, m_conn, m_xi);
for (int i=0; i<npoints; i++)
{
for (int j=0; j<4; j++)
{
for (int k=0; k<dim; k++)
{
coordsm(i*4+j,k) = mesh1.GetVertex(m_conn[i*4+j])[k]+x1[dim*m_conn[i*4+j]+k];
}
}
}
//coordsm.Print();
SparseMatrix M(nnd,ndofs);
std::vector<SparseMatrix> dM(nnd, SparseMatrix(ndofs,ndofs));
Assemble_Contact(nnd, npoints, ndofs, xs, m_xi, coordsm,
s_conn, m_conn, g, M, dM);
std::set<int> dirbdryv2;
for (int b=0; b<mesh2.GetNBE(); ++b)
{
if (mesh2.GetBdrAttribute(b) == 1)
{
Array<int> vert;
mesh2.GetBdrElementVertices(b, vert);
for (auto v : vert)
{
dirbdryv2.insert(v);
}
}
}
std::set<int> dirbdryv1;
for (int b=0; b<mesh1.GetNBE(); ++b)
{
if (mesh1.GetBdrAttribute(b) == 1)
{
Array<int> vert;
mesh1.GetBdrElementVertices(b, vert);
for (auto v : vert)
{
dirbdryv1.insert(v);
}
}
}
Array<int> Dirichlet_dof;
Array<double> Dirichlet_val;
for (auto v : dirbdryv2)
{
for (int i=0; i<dim; ++i)
{
Dirichlet_dof.Append(v*dim + i + ndof_1);
Dirichlet_val.Append(0.);
}
}
double delta = 0.1;
for (auto v : dirbdryv1)
{
Dirichlet_dof.Append(v*dim + 0);
Dirichlet_val.Append(delta);
Dirichlet_dof.Append(v*dim + 1);
Dirichlet_val.Append(0.);
Dirichlet_dof.Append(v*dim + 2);
Dirichlet_val.Append(0.);
}
{
char vishost[] = "localhost";
int visport = 19916;
socketstream mesh1_sock(vishost, visport);
mesh1_sock.precision(8);
mesh1_sock << "mesh\n" << mesh1 << flush;
socketstream mesh2_sock(vishost, visport);
mesh2_sock.precision(8);
mesh2_sock << "mesh\n" << mesh2 << flush;
}
//M.Print();
/*Vector eps(ndofs);
Vector sol(ndofs); sol = 0.;
for(int i=0;i<ndofs;i++) eps[i] = 1e-5 * i ;
for(int i=0;i<9;i++)
{
cout<<i<<endl;
dM[s_conn[i]].Mult(eps,sol);
sol.Print();
}
*/
return 0;
}
+3 -20
View File
@@ -18,8 +18,6 @@
// ex14 -m ../data/amr-quad.mesh -r 3
// ex14 -m ../data/amr-hex.mesh
// ex14 -m ../data/fichera-amr.mesh
// ex14 -m ../data/inline-quad.mesh -r 2 -rk
// ex14 -m ../data/star.mesh -r 0 -o 3 -rk
//
// Description: This example code demonstrates the use of MFEM to define a
// discontinuous Galerkin (DG) finite element discretization of
@@ -45,11 +43,10 @@ int main(int argc, char *argv[])
const char *mesh_file = "../data/star.mesh";
int ref_levels = -1;
int order = 1;
bool rk = false;
double sigma = -1.0;
double kappa = -1.0;
double eta = 0.0;
bool visualization = true;
bool visualization = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -57,9 +54,7 @@ int main(int argc, char *argv[])
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly, -1 for auto.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) >= 0 OR reproducing kernel order.");
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
"Use reproducing kernel functions");
"Finite element order (polynomial degree) >= 0.");
args.AddOption(&sigma, "-s", "--sigma",
"One of the three DG penalty parameters, typically +1/-1."
" See the documentation of class DGDiffusionIntegrator.");
@@ -80,10 +75,6 @@ int main(int argc, char *argv[])
{
kappa = (order+1)*(order+1);
}
if (rk && sigma < 0.0)
{
sigma = 1.0;
}
args.PrintOptions(cout);
// 2. Read the mesh from the given mesh file. We can handle triangular,
@@ -113,15 +104,7 @@ int main(int argc, char *argv[])
// 4. Define a finite element space on the mesh. Here we use discontinuous
// finite elements of the specified order >= 0.
FiniteElementCollection *fec;
if (rk)
{
fec = new LocalKernelFECollection(dim, 4, 6, order, 1.01 + order, 0.0);
}
else
{
fec = new DG_FECollection(order, dim);
}
FiniteElementCollection *fec = new DG_FECollection(order, dim);
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
cout << "Number of unknowns: " << fespace->GetVSize() << endl;
+1 -18
View File
@@ -17,8 +17,6 @@
// mpirun -np 4 ex14p -m ../data/inline-segment.mesh -rs 5
// mpirun -np 4 ex14p -m ../data/amr-quad.mesh -rs 3
// mpirun -np 4 ex14p -m ../data/amr-hex.mesh
// mpirun -np 4 ex14p -m ../data/star.mesh -rs 1 -o 2 -rk
// mpirun -np 4 ex14p -m ../data/amr-quad.mesh -rs 2 -rk
//
// Description: This example code demonstrates the use of MFEM to define a
// discontinuous Galerkin (DG) finite element discretization of
@@ -83,7 +81,6 @@ int main(int argc, char *argv[])
int ser_ref_levels = -1;
int par_ref_levels = 2;
int order = 1;
bool rk = false;
double sigma = -1.0;
double kappa = -1.0;
double eta = 0.0;
@@ -99,8 +96,6 @@ int main(int argc, char *argv[])
"Number of times to refine the mesh uniformly in parallel.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) >= 0.");
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
"Use reproducing kernel functions");
args.AddOption(&sigma, "-s", "--sigma",
"One of the three DG penalty parameters, typically +1/-1."
" See the documentation of class DGDiffusionIntegrator.");
@@ -124,10 +119,6 @@ int main(int argc, char *argv[])
{
kappa = (order+1)*(order+1);
}
if (rk && sigma < 0.0)
{
sigma = 1.0;
}
if (myid == 0)
{
args.PrintOptions(cout);
@@ -172,15 +163,7 @@ int main(int argc, char *argv[])
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use discontinuous finite elements of the specified order >= 0.
FiniteElementCollection *fec;
if (rk)
{
fec = new LocalKernelFECollection(dim, 4, 6, order, 1.01 + order, 0.0);
}
else
{
fec = new DG_FECollection(order, dim);
}
FiniteElementCollection *fec = new DG_FECollection(order, dim);
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_BigInt size = fespace->GlobalTrueVSize();
if (myid == 0)
+4 -18
View File
@@ -9,8 +9,6 @@
// ex18 -p 1 -r 0 -o 5 -s 6
// ex18 -p 2 -r 1 -o 1 -s 3
// ex18 -p 2 -r 0 -o 3 -s 3
// ex18 -p 1 -r 1 -o 3 -s 4 -rk
// ex18 -p 2 -r 0 -o 3 -s 3 -rk
//
// Description: This example code solves the compressible Euler system of
// equations, a model nonlinear hyperbolic PDE, with a
@@ -67,7 +65,6 @@ int main(int argc, char *argv[])
const char *mesh_file = "../data/periodic-square.mesh";
int ref_levels = 1;
int order = 3;
bool rk = false;
int ode_solver_type = 4;
double t_final = 2.0;
double dt = -0.01;
@@ -87,8 +84,6 @@ int main(int argc, char *argv[])
"Number of times to refine the mesh uniformly.");
args.AddOption(&order, "-o", "--order",
"Order (degree) of the finite elements.");
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
"Use reproducing kernel functions");
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
"ODE solver: 1 - Forward Euler,\n\t"
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
@@ -144,21 +139,13 @@ int main(int argc, char *argv[])
// 5. Define the discontinuous DG finite element space of the given
// polynomial order on the refined mesh.
FiniteElementCollection *fec;
if (rk)
{
fec = new LocalKernelFECollection(dim, 5, 7, order, 2.01 + order, 1.0);
}
else
{
fec = new DG_FECollection(order, dim);
}
DG_FECollection fec(order, dim);
// Finite element space for a scalar (thermodynamic quantity)
FiniteElementSpace fes(&mesh, fec);
FiniteElementSpace fes(&mesh, &fec);
// Finite element space for a mesh-dim vector quantity (momentum)
FiniteElementSpace dfes(&mesh, fec, dim, Ordering::byNODES);
FiniteElementSpace dfes(&mesh, &fec, dim, Ordering::byNODES);
// Finite element space for all variables together (total thermodynamic state)
FiniteElementSpace vfes(&mesh, fec, num_equation, Ordering::byNODES);
FiniteElementSpace vfes(&mesh, &fec, num_equation, Ordering::byNODES);
// This example depends on this ordering of the space.
MFEM_ASSERT(fes.GetOrdering() == Ordering::byNODES, "");
@@ -317,7 +304,6 @@ int main(int argc, char *argv[])
// Free the used memory.
delete ode_solver;
delete fec;
return 0;
}
+4 -18
View File
@@ -9,8 +9,6 @@
// mpirun -np 4 ex18p -p 1 -rs 1 -rp 1 -o 5 -s 6
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 1 -s 3
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 3 -s 3
// mpirun -np 4 ex18p -p 1 -rs 1 -rp 0 -o 3 -s 4 -rk
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 0 -o 3 -s 3 -rk
//
// Description: This example code solves the compressible Euler system of
// equations, a model nonlinear hyperbolic PDE, with a
@@ -72,7 +70,6 @@ int main(int argc, char *argv[])
int ser_ref_levels = 0;
int par_ref_levels = 1;
int order = 3;
bool rk = false;
int ode_solver_type = 4;
double t_final = 2.0;
double dt = -0.01;
@@ -96,8 +93,6 @@ int main(int argc, char *argv[])
" partitioning.");
args.AddOption(&order, "-o", "--order",
"Order (degree) of the finite elements.");
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
"Use reproducing kernel functions");
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
"ODE solver: 1 - Forward Euler,\n\t"
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
@@ -166,21 +161,13 @@ int main(int argc, char *argv[])
// 7. Define the discontinuous DG finite element space of the given
// polynomial order on the refined mesh.
FiniteElementCollection *fec;
if (rk)
{
fec = new LocalKernelFECollection(dim, 5, 7, order, 2.01 + order, 1.0);
}
else
{
fec = new DG_FECollection(order, dim);
}
DG_FECollection fec(order, dim);
// Finite element space for a scalar (thermodynamic quantity)
ParFiniteElementSpace fes(&pmesh, fec);
ParFiniteElementSpace fes(&pmesh, &fec);
// Finite element space for a mesh-dim vector quantity (momentum)
ParFiniteElementSpace dfes(&pmesh, fec, dim, Ordering::byNODES);
ParFiniteElementSpace dfes(&pmesh, &fec, dim, Ordering::byNODES);
// Finite element space for all variables together (total thermodynamic state)
ParFiniteElementSpace vfes(&pmesh, fec, num_equation, Ordering::byNODES);
ParFiniteElementSpace vfes(&pmesh, &fec, num_equation, Ordering::byNODES);
// This example depends on this ordering of the space.
MFEM_ASSERT(fes.GetOrdering() == Ordering::byNODES, "");
@@ -388,7 +375,6 @@ int main(int argc, char *argv[])
// Free the used memory.
delete ode_solver;
delete fec;
return 0;
}
+7 -13
View File
@@ -246,23 +246,17 @@ int main(int argc, char *argv[])
e_var /= (nsteps + 1);
double e_sd = sqrt(e_var);
double e_loc_stats[2];
double *e_stats = (myid == 0) ? new double[2 * num_procs] : (double*)NULL;
e_loc_stats[0] = e_mean;
e_loc_stats[1] = e_sd;
MPI_Gather(e_loc_stats, 2, MPI_DOUBLE, e_stats, 2, MPI_DOUBLE, 0, comm);
if (myid == 0)
{
cout << endl << "Mean and standard deviation of the energy "
<< "for different initial conditions" << endl;
for (int i = 0; i < num_procs; i++)
cout << endl << "Mean and standard deviation of the energy" << endl;
}
for (int i = 0; i < num_procs; i++)
{
if (myid == i)
{
cout << i << ": " << e_stats[2 * i + 0]
<< "\t" << e_stats[2 * i + 1] << endl;
cout << myid << ": " << e_mean << "\t" << e_sd << endl;
}
delete [] e_stats;
MPI_Barrier(comm);
}
// 9. Finalize the GnuPlot output

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