Compare commits
19
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
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bc39660801 | ||
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a72cd6b7a8 | ||
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bcc308b263 | ||
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23b5e402e3 | ||
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ee0dd42064 | ||
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39a78ff3df | ||
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20460cafda | ||
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2f188e9fcf | ||
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e772d71ecb | ||
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d9c4cad220 | ||
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0c572d4779 | ||
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4320ad2272 | ||
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5c09d2b4c9 | ||
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65e75e271b | ||
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f8e5fe77e6 | ||
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4ff880f0cf | ||
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a1f57a6375 | ||
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5ffb605333 | ||
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f8ea695e13 |
+8
-14
@@ -31,7 +31,7 @@ install:
|
||||
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
|
||||
- cmake -H. -Bbuild
|
||||
# -DCMAKE_BUILD_TYPE=Release
|
||||
- cmake --build build --target metis -j 4
|
||||
- cmake --build build
|
||||
- set METIS_PATH=%cd%
|
||||
- cd ..
|
||||
|
||||
@@ -40,7 +40,7 @@ install:
|
||||
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.19.0/src
|
||||
- cmake -H. -Bbuild
|
||||
- cmake --build build -j 4
|
||||
- cmake --build build
|
||||
- cmake --build build --target install
|
||||
- cd ../..
|
||||
|
||||
@@ -49,20 +49,14 @@ install:
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
|
||||
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
|
||||
build_script:
|
||||
- cmake --build build_parallel --config Debug -j 4
|
||||
# - cmake --build build_serial --config Release -j 4
|
||||
# - cmake --build build_serial --target exec --config Release -j 4
|
||||
- cmake --build build_shared_serial --config Release -j 4
|
||||
- cmake --build build_shared_serial --target exec --config Release -j 4
|
||||
- cmake --build build_parallel --config Release -j 4
|
||||
- cmake --build build_serial --config Release -j 4
|
||||
- cmake --build build_serial --target exec --config Release -j 4
|
||||
|
||||
after_build:
|
||||
# - cd build_serial
|
||||
# - ctest -C Release --output-on-failure
|
||||
# - cd ..
|
||||
- cd build_shared_serial
|
||||
- cd build_serial
|
||||
- ctest -C Release --output-on-failure
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -74,19 +74,12 @@ jobs:
|
||||
codecov: YES
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
target: opt
|
||||
mpi: par
|
||||
config-opts: '-DBUILD_SHARED_LIBS=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
# This option can be set to pass additional configuration options to
|
||||
# the MFEM configuration command.
|
||||
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
@@ -162,7 +155,7 @@ jobs:
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -171,7 +164,7 @@ jobs:
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -190,7 +183,7 @@ jobs:
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
@@ -217,7 +210,7 @@ jobs:
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -229,7 +222,7 @@ jobs:
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
|
||||
library-only: ${{ matrix.target == 'dbg' }}
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
@@ -263,15 +256,13 @@ jobs:
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && \
|
||||
ctest --output-on-failure -C ${CTEST_CONFIG} || \
|
||||
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
uses: mfem/github-actions/upload-coverage@v2.2
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -57,7 +57,7 @@ jobs:
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -72,14 +72,14 @@ jobs:
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Sanitizer"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
jobs:
|
||||
Serial:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: MFEM Checkout
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
mpi: seq
|
||||
hypre-dir: unused-hypre-dir
|
||||
metis-dir: unused-metis-dir
|
||||
mfem-dir: mfem
|
||||
build-system: make
|
||||
library-only: false
|
||||
config-options:
|
||||
CXX="clang++-14"
|
||||
CXXFLAGS="-g -O1 -std=c++11
|
||||
-fsanitize=address
|
||||
-fno-omit-frame-pointer
|
||||
-fsanitize-address-use-after-scope"
|
||||
|
||||
- name: MFEM Info
|
||||
working-directory: mfem
|
||||
run: make info
|
||||
|
||||
- name: MFEM Sanitize
|
||||
working-directory: mfem
|
||||
run:
|
||||
ASAN_OPTIONS="detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1"
|
||||
make test
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
+13
-33
@@ -21,15 +21,11 @@ CMakeFiles/
|
||||
# Default install location
|
||||
/mfem/
|
||||
|
||||
# Typical build directory
|
||||
/build/
|
||||
|
||||
# Generated files in main directory, config/ and docs/
|
||||
/deps.mk
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.cmake
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
@@ -122,9 +118,11 @@ examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/ginkgo/ex1
|
||||
examples/ginkgo/refined.mesh
|
||||
examples/ginkgo/sol.gf
|
||||
examples/gingko/ex1
|
||||
examples/gingko/refined.mesh
|
||||
examples/gingko/sol.gf
|
||||
examples/gingko/mesh.*
|
||||
examples/gingko/sol.*
|
||||
|
||||
examples/hiop/ex9
|
||||
examples/hiop/ex9p
|
||||
@@ -133,6 +131,12 @@ examples/hiop/ex9-mesh.*
|
||||
examples/hiop/ex9-init.*
|
||||
examples/hiop/ex9-final.*
|
||||
|
||||
examples/ipopt/exContactBlockTL
|
||||
examples/ipopt/exContactBlockTL.mesh
|
||||
examples/ipopt/exContactBlockTL-mesh.*
|
||||
examples/ipopt/exContactBlockTL-init.*
|
||||
examples/ipopt/exContactBlockTL-final.*
|
||||
|
||||
examples/petsc/ex[1-69]p
|
||||
examples/petsc/ex1[0-1]p
|
||||
examples/petsc/mesh.*
|
||||
@@ -150,8 +154,8 @@ examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex[12]
|
||||
examples/pumi/ex[16]p
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
@@ -196,9 +200,6 @@ miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
miniapps/gslib/findpts
|
||||
miniapps/gslib/pfindpts
|
||||
miniapps/gslib/schwarz_ex1
|
||||
miniapps/gslib/schwarz_ex1p
|
||||
miniapps/gslib/interpolated.gf
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
@@ -211,11 +212,9 @@ miniapps/meshing/trimmer
|
||||
miniapps/meshing/reflector
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/pmesh-fitting
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
miniapps/meshing/mesh-quality
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
@@ -252,7 +251,6 @@ miniapps/navier/navier_tgv
|
||||
miniapps/navier/navier_shear
|
||||
miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/navier_turbchan
|
||||
miniapps/navier/navier_cht
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
|
||||
@@ -318,28 +316,12 @@ miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/hdiv-linear-solver/darcy
|
||||
miniapps/hdiv-linear-solver/grad_div
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/hooke/hooke
|
||||
|
||||
miniapps/dpg/diffusion
|
||||
miniapps/dpg/pdiffusion
|
||||
miniapps/dpg/convection-diffusion
|
||||
miniapps/dpg/pconvection-diffusion
|
||||
miniapps/dpg/acoustics
|
||||
miniapps/dpg/pacoustics
|
||||
miniapps/dpg/maxwell
|
||||
miniapps/dpg/pmaxwell
|
||||
miniapps/dpg/ParaView
|
||||
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
@@ -352,8 +334,6 @@ tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
tests/unit/parallel_in_serial.mesh
|
||||
tests/unit/parallel_in_serial.gf
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,10 +22,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -55,10 +57,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -47,10 +47,12 @@ setup_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,11 +35,13 @@ setup:
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
|
||||
# try every 5 seconds; we may want to add a counter for the number of
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
@@ -67,10 +69,12 @@ setup:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,14 +14,14 @@ stages:
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
opt_mpi_cuda_xl_16_1_1_8:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
|
||||
+10
-12
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -51,8 +51,6 @@ cleanup:
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
|
||||
- make -C "${CI_PROJECT_DIR}" distclean
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
@@ -68,10 +66,12 @@ report_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -82,14 +82,12 @@ report_baseline:
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
|
||||
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
|
||||
fi
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -27,39 +27,44 @@ allocate_resource:
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_10:
|
||||
debug_ser_gcc_4_9_3:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug~mpi"
|
||||
SPEC: "%gcc@4.9.3 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_10:
|
||||
debug_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug+mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_10:
|
||||
debug_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 ~mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10:
|
||||
opt_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1"
|
||||
SPEC: "%gcc@6.1.0 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_sundials:
|
||||
opt_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +sundials"
|
||||
SPEC: "%gcc@6.1.0"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_petsc:
|
||||
opt_par_gcc_6_1_0_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
|
||||
SPEC: "%gcc@6.1.0 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_pumi:
|
||||
opt_par_gcc_6_1_0_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
|
||||
+29
-16
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -42,34 +42,47 @@ fi
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
status=0
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
if [[ -s ${glob_err} ]]; then
|
||||
echo "ERROR during ${BASELINE_TEST} execution"
|
||||
echo "Here is the ${glob_err} file content"
|
||||
if [[ -s ${glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${glob_err} file content";
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
status=1
|
||||
fi
|
||||
if [[ -f ${base_patch} ]]; then
|
||||
exit 1;
|
||||
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${base_patch} or ${base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]; then
|
||||
elif [[ -f ${base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]; then
|
||||
if [[ -f ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
status=1
|
||||
# We create a .err file, because that's how we signal that there was a diff.
|
||||
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
|
||||
fi
|
||||
if [[ $status -eq 0 ]]; then
|
||||
|
||||
if [[ ! -s ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
exit $status
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -8,126 +8,61 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.5.3 (development)
|
||||
Version 4.5.1 (development)
|
||||
===========================
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new miniapp, Mesh Quality, for evaluating mesh quality using size,
|
||||
skewness, and aspect-ratio computed from the Jacobian of the transformation.
|
||||
|
||||
- Added a new miniapp for interface and boundary fitting to implicit domains
|
||||
defined using level-set functions. See miniapps/meshing/pmesh-fitting.cpp
|
||||
|
||||
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
|
||||
and parallel examples for diffusion, convection-diffusion, acoustics and
|
||||
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
|
||||
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
|
||||
integrators are added in support of DPG systems: TraceIntegrator,
|
||||
NormalTraceIntegrator and TangentTraceIntegrator.
|
||||
|
||||
- Added a new H(div) solvers miniapp in miniapps/hdiv-linear-solver,
|
||||
demonstrating the use of a matrix-free saddle-point solver methodology,
|
||||
suitable for high-order discretizations and for GPU acceleration. Examples
|
||||
illustrating the solution of Darcy and grad-div problems are included.
|
||||
|
||||
- Added a random refinement option to the mesh-explorer miniapp to assist users
|
||||
in experimenting with nonconforming meshes.
|
||||
|
||||
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
|
||||
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
|
||||
as the coarsening operator for non-conforming AMR meshes.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added new methods in the Mesh class to set and get attributes on NURBS patches
|
||||
and patch boundaries.
|
||||
|
||||
- Added HIP support to the SUNDIALS interface.
|
||||
|
||||
- TMOP improvement: added asymptotically-balanced compound metrics 90, 94, 328,
|
||||
338. Added the tmop-metric-magnitude tool for tracking how metrics change
|
||||
under geometric perturbations.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Face restriction operators for Nedelec and Raviart-Thomas finite element
|
||||
spaces are now supported through the ConformingFaceRestriction class.
|
||||
|
||||
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
|
||||
|
||||
- Added support for p-refined meshes in FindPointsGSLIB.
|
||||
|
||||
- Added radial basis functions and reproducing kernels as alternatives to
|
||||
polynomial functions. These are accessed through the LocalKernelFECollection.
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Updated interface to MUMPS direct solver to support multiple right-hand
|
||||
sides, block low-rank compression, builds using 64-bit integers, and other
|
||||
improvements.
|
||||
|
||||
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
|
||||
This interface provides a serial (OpenMP shared memory) version of Pardiso for
|
||||
use with SparseMatrix. This complements the existing parallel (MPI distributed
|
||||
memory) version already available through the CPardiso MFEM integration.
|
||||
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
|
||||
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Improved lambda body debugging with the addition of mfem::forall functions.
|
||||
These functions can take the place of the MFEM_FORALL macros, which have been
|
||||
preserved for backwards compatibility.
|
||||
|
||||
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
|
||||
in the fem/integ/ subdirectory.
|
||||
|
||||
|
||||
Version 4.5.2, released on March 23, 2023
|
||||
=========================================
|
||||
|
||||
- Added support for pyramids in non-conforming meshes. Currently only isotropic
|
||||
refinement is supported in this case.
|
||||
|
||||
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
|
||||
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
|
||||
|
||||
- Added a fast normalization-based distance solver, see the Distance miniapp
|
||||
in the miniapps/shifted/ directory.
|
||||
|
||||
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
|
||||
hexahedral mesh about a plane.
|
||||
|
||||
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
|
||||
domain boundary.
|
||||
|
||||
- Added an option to auto-balance compound TMOP metrics.
|
||||
- Added support for pyramids in Gmsh meshes.
|
||||
|
||||
- Fixed a bug in TMOP metric 301.
|
||||
|
||||
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
|
||||
as the coarsening operator for non-conforming AMR meshes.
|
||||
- Added an option to auto-balance compound TMOP metrics.
|
||||
|
||||
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
|
||||
face-neighbor elements.
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- TBD
|
||||
|
||||
- Added support for pyramids in Gmsh meshes.
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Added a fast normalization-based distance solver, see the Distance miniapp
|
||||
in the miniapps/shifted/ directory.
|
||||
|
||||
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
|
||||
formats using the corresponding DataCollection. See option 'D' in the menu.
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new meshing miniapp, reflector, which reflects a high-order or NURBS
|
||||
hexahedral mesh about a plane.
|
||||
|
||||
- VisItDataCollection now correctly handles data collection names containing
|
||||
underscores.
|
||||
- The mesh-explorer miniapp can now save mesh files in the VisIt or ParaView
|
||||
formats using the corresponding DataCollection objects. See option 'D' in the
|
||||
main menu.
|
||||
|
||||
- Added support for shared Windows builds with MSVC through CMake.
|
||||
Developers note: this enhancement is facilitated by the addition of the macro
|
||||
MFEM_EXPORT, see config.hpp for more details on its usage.
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
|
||||
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
|
||||
|
||||
- The following integrations have updated minimum version requirements:
|
||||
* RAJA >= 2022.10.3
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- VisItDataCollection now correctly handles collection names containing
|
||||
underscores.
|
||||
|
||||
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
|
||||
used to represent the MPI rank because VisIt seems to require 6 digits.
|
||||
This parameter can still be explicitly overridden with
|
||||
VisItDataCollection::SetPadDigitsRank().
|
||||
|
||||
API changes
|
||||
-----------
|
||||
- The implicit cast methods of class Vector to 'double *' and 'const double *'
|
||||
@@ -138,11 +73,6 @@ API changes
|
||||
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
|
||||
should be used instead.
|
||||
|
||||
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
|
||||
used to represent the MPI rank because VisIt seems to require 6 digits.
|
||||
This parameter can still be explicitly overridden with SetPadDigitsRank().
|
||||
|
||||
|
||||
Version 4.5, released on October 22, 2022
|
||||
=========================================
|
||||
|
||||
@@ -186,6 +116,9 @@ Discretization improvements
|
||||
- Added a class CoefficientVector for efficient access of variable coefficient
|
||||
values at quadrature points (in particular for GPU/device kernels).
|
||||
|
||||
- Added support for GridFunction::GetGradients() and
|
||||
GriFunction::GetVectorGradient() on face-neighbor elements.
|
||||
|
||||
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
|
||||
spatial Gaussian white noise.
|
||||
|
||||
|
||||
+22
-56
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -13,7 +13,6 @@
|
||||
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
|
||||
# Version 3.8 or newer is required for direct CUDA support.
|
||||
cmake_minimum_required(VERSION 3.8)
|
||||
message(STATUS "CMake version: ${CMAKE_VERSION}")
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
@@ -25,11 +24,8 @@ set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
# Load user settings before the defaults - this way the defaults will not
|
||||
# overwrite the user set options. If the user has not set all options, we still
|
||||
# have the defaults.
|
||||
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
|
||||
if (USER_CONFIG_LOADED)
|
||||
set(USER_CONFIG_LOADED "LOADED")
|
||||
endif()
|
||||
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
|
||||
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
|
||||
include("${USER_CONFIG}" OPTIONAL)
|
||||
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
|
||||
|
||||
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
|
||||
@@ -57,7 +53,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.5.3)
|
||||
set(${PROJECT_NAME}_VERSION 4.5.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -82,7 +78,7 @@ if (MFEM_USE_CONDUIT OR
|
||||
# * find_package(PETSc REQUIRED)
|
||||
set(XSDK_ENABLE_C ON)
|
||||
endif()
|
||||
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
@@ -187,23 +183,6 @@ else()
|
||||
set(MFEM_DEBUG OFF)
|
||||
endif()
|
||||
|
||||
# Shared build on Windows
|
||||
if (WIN32 AND BUILD_SHARED_LIBS)
|
||||
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
|
||||
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
|
||||
"Automatically export symbols for shared Windows DLL build")
|
||||
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
|
||||
# the build directory, so that the .exe files can find the .dll files at
|
||||
# runtime:
|
||||
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
|
||||
# Note: CMake tests are run from the build-tree sub-directory where the test
|
||||
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
|
||||
# work fine.
|
||||
# Not strictly necessary:
|
||||
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
endif()
|
||||
|
||||
# AMD HIP
|
||||
if (MFEM_USE_HIP)
|
||||
if (HIP_ARCH)
|
||||
@@ -317,9 +296,6 @@ if (MFEM_USE_SUNDIALS)
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
if (MFEM_USE_HIP)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
@@ -336,7 +312,6 @@ endif()
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
@@ -429,6 +404,15 @@ if (MFEM_USE_HIOP)
|
||||
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
|
||||
endif()
|
||||
|
||||
# IpOpt optimizer
|
||||
if (MFEM_USE_IPOPT)
|
||||
find_package(IPOPT REQUIRED)
|
||||
message(
|
||||
STATUS
|
||||
"IPOPT_INCLUDE_DIRS=${IPOPT_INCLUDE_DIRS}, IPOPT_LIBRARIES=${IPOPT_LIBRARIES}, IPOPT_DIR=${IPOPT_DIR}")
|
||||
# find_package updates IPOPT_FOUND, IPOPT_INCLUDE_DIRS, IPOPT_LIBRARIES
|
||||
endif()
|
||||
|
||||
# CoDiPack package
|
||||
if (MFEM_USE_CODIPACK)
|
||||
find_package(CODIPACK REQUIRED)
|
||||
@@ -470,18 +454,12 @@ if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
# MKL CPardiso
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MKL Pardiso
|
||||
if (MFEM_USE_MKL_PARDISO)
|
||||
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
@@ -530,9 +508,9 @@ find_package(Threads REQUIRED)
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
NETCDF MPFR PUMI HIOP IPOPT POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
|
||||
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
@@ -550,7 +528,6 @@ list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
|
||||
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
|
||||
|
||||
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
|
||||
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
|
||||
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
@@ -606,19 +583,7 @@ target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
|
||||
# The INSTALL_INTERFACE is handled below
|
||||
${TPL_INCLUDE_DIRS})
|
||||
if (MFEM_USE_MPI)
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
@@ -630,7 +595,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
|
||||
"${PROJECT_BINARY_DIR}/config/_config.hpp")
|
||||
@@ -750,7 +714,7 @@ set(INSTALL_LIB_DIR lib
|
||||
set(INSTALL_CMAKE_DIR lib/cmake/mfem
|
||||
CACHE PATH "Relative path for installing cmake config files.")
|
||||
|
||||
target_include_directories(mfem BEFORE
|
||||
target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
|
||||
|
||||
@@ -802,8 +766,10 @@ endif()
|
||||
|
||||
# Install the configuration header files
|
||||
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
|
||||
RENAME config.hpp)
|
||||
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
|
||||
|
||||
# Package the whole thing up nicely
|
||||
|
||||
+2
-3
@@ -112,6 +112,7 @@ The MFEM source code has the following structure:
|
||||
│ ├── caliper
|
||||
│ ├── ginkgo
|
||||
│ ├── hiop
|
||||
│ ├── ipopt
|
||||
│ ├── jupyter
|
||||
│ ├── moonolith
|
||||
│ ├── petsc
|
||||
@@ -121,7 +122,6 @@ The MFEM source code has the following structure:
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── integ
|
||||
│ ├── lor
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
@@ -137,7 +137,6 @@ The MFEM source code has the following structure:
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
@@ -211,7 +210,7 @@ device/host memory manager.
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
|
||||
@@ -471,6 +471,9 @@ MFEM_USE_HIOP = YES/NO
|
||||
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
|
||||
HPC solver for nonlinear optimization problems.
|
||||
|
||||
MFEM_USE_IPOPT = YES/NO
|
||||
Enable the usage of Ipopt in MFEM.
|
||||
|
||||
MFEM_USE_CODIPACK = YES/NO
|
||||
Enable automatic differentiation using the CoDiPack library.
|
||||
www.scicomp.uni-kl.de/codi/
|
||||
@@ -628,13 +631,9 @@ The specific libraries and their options are:
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
|
||||
for HIP.
|
||||
URL: http://computing.llnl.gov/projects/sundials/sundials-software
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0,
|
||||
SUNDIALS >= 5.4.0 for CUDA support, and
|
||||
SUNDIALS >= 5.7.0 for HIP support.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
@@ -742,6 +741,11 @@ The specific libraries and their options are:
|
||||
Options: HIOP_OPT, HIOP_LIB.
|
||||
Versions: HIOP >= 0.4.6.
|
||||
|
||||
- Ipopt (optional), used when MFEM_USE_IPOPT = YES.
|
||||
URL: https://github.com/coin-or/Ipopt
|
||||
Options: IPOPT_OPT, IPOPT_LIB.
|
||||
Versions: IPOPT >= 3.14
|
||||
|
||||
- CoDiPack (optional), used with MFEM_USE_CODIPACK = YES
|
||||
URL: https://www.scicomp.uni-kl.de/codi/
|
||||
Options: CODIPACK_OPT
|
||||
@@ -976,6 +980,7 @@ MFEM_USE_MPFR
|
||||
MFEM_USE_ZLIB
|
||||
MFEM_USE_PUMI
|
||||
MFEM_USE_HIOP
|
||||
MFEM_USE_IPOPT
|
||||
MFEM_USE_CODIPACK
|
||||
MFEM_USE_ADFORWARD
|
||||
MFEM_USE_CUDA
|
||||
@@ -1039,6 +1044,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
- POSIXCLOCKS
|
||||
- PUMI
|
||||
- HIOP
|
||||
- IPOPT
|
||||
- CoDiPack
|
||||
- OCCA
|
||||
- RAJA
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
BSD 3-Clause License
|
||||
|
||||
Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
|
||||
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
|
||||
All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -36,6 +36,7 @@ set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
|
||||
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
|
||||
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
|
||||
set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
|
||||
set(MFEM_USE_IPOPT @MFEM_USE_IPOPT@)
|
||||
set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
|
||||
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
|
||||
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
|
||||
@@ -55,8 +56,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
|
||||
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
|
||||
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
|
||||
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
|
||||
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
|
||||
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
|
||||
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
|
||||
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
|
||||
+62
-70
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -39,9 +39,6 @@
|
||||
// Description of the git commit used to build MFEM.
|
||||
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
#cmakedefine MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
#cmakedefine MFEM_USE_MPI
|
||||
@@ -80,102 +77,100 @@
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
#cmakedefine MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
#cmakedefine MFEM_USE_SUPERLU
|
||||
#cmakedefine MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
#cmakedefine MFEM_USE_MUMPS
|
||||
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
// Enable functionality based on the Ginkgo library
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// Enable MFEM functionality based on the AmgX library
|
||||
#cmakedefine MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable MFEM functionality based on the GnuTLS library
|
||||
#cmakedefine MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
#cmakedefine MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
#cmakedefine MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Enable MFEM functionality based on the NetCDF library
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable MFEM functionality based on the FMS library
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the Moonolith library
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HiOp library
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the Ipopt library
|
||||
#cmakedefine MFEM_USE_IPOPT
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Build the HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
#cmakedefine MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable functionality based on the libCEED library.
|
||||
// Enable MFEM functionality based on the libCEED library
|
||||
#cmakedefine MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Algoim library.
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// Enable MFEM functionality based on the Umpire library
|
||||
#cmakedefine MFEM_USE_UMPIRE
|
||||
|
||||
// Enable IO functionality based on the ADIOS2 library.
|
||||
// Enable MFEM functionality based on the ADIOS2 library
|
||||
#cmakedefine MFEM_USE_ADIOS2
|
||||
|
||||
// Enable MFEM functionality based on the Caliper library
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable MFEM functionality based on the Algoim library
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
@@ -186,16 +181,13 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
#cmakedefine MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
#cmakedefine MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// Enable MFEM functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable Enzyme for AD
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
|
||||
# we only need HDF5 if Conduit was built with HDF5 support
|
||||
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
|
||||
"Additional packages required by Conduit.")
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
|
||||
# MFEM's FindHDF5.cmake is not used.
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
|
||||
ADD_COMPONENT relay
|
||||
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -0,0 +1,23 @@
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Sets the following variables:
|
||||
# - IPOPT_FOUND
|
||||
# - IPOPT_INCLUDE_DIRS
|
||||
# - IPOPT_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(IPOPT IPOPT IPOPT_DIR
|
||||
"include" "IpTNLP.hpp"
|
||||
"lib" "ipopt"
|
||||
"Paths to headers required by IPOPT."
|
||||
"Libraries required by IPOPT.")
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,27 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MKL_PARDISO_FOUND
|
||||
# - MKL_PARDISO_LIBRARIES
|
||||
# - MKL_PARDISO_INCLUDE_DIRS
|
||||
|
||||
if(NOT MKL_LIBRARY_DIR)
|
||||
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
|
||||
set(MKL_LIBRARY_DIR "lib/intel64")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MKL_PARDISO MKL_PARDISO
|
||||
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
|
||||
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
|
||||
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
|
||||
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -11,9 +11,8 @@
|
||||
|
||||
# Sets the following variables:
|
||||
# - MUMPS_FOUND
|
||||
# - MUMPS_LIBRARIES
|
||||
# - MUMPS_INCLUDE_DIRS
|
||||
# - MUMPS_VERSION
|
||||
# - MUMPS_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
${CMAKE_CURRENT_BINARY_DIR}/config
|
||||
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
|
||||
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
|
||||
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
|
||||
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
|
||||
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
|
||||
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
|
||||
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unable to determine MUMPS version.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,17 +14,11 @@
|
||||
# - NETCDF_LIBRARIES
|
||||
# - NETCDF_INCLUDE_DIRS
|
||||
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
|
||||
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
|
||||
# We need to guard against the case where HDF5 was already found but without
|
||||
# the HL extensions (in which case mfem_find_package will treat the package
|
||||
@@ -41,11 +35,6 @@ mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
|
||||
# The netcdf library will always be the first element of NETCDF_LIBRARIES
|
||||
# and we need to insert after that library but before the hdf5 library, so
|
||||
# position 1 is used
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
if (HDF5_C_LIBRARY_hdf5_hl)
|
||||
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
if (NOT NetCDF_FIND_QUIETLY)
|
||||
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
|
||||
endif()
|
||||
endif()
|
||||
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
|
||||
# is already added to NETCDF_LIBRARIES)
|
||||
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
|
||||
ADD_COMPONENT NVector_Cuda
|
||||
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
|
||||
ADD_COMPONENT NVector_Hip
|
||||
"include" nvector/nvector_hip.h "lib" sundials_nvechip
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT NVector_Parallel
|
||||
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
|
||||
ADD_COMPONENT NVector_MPIPlusX
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -103,6 +103,25 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
|
||||
|
||||
target_link_libraries(${EXE_NAME} mfem)
|
||||
if (MFEM_USE_MPI)
|
||||
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
|
||||
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
|
||||
|
||||
# Language-specific include directories:
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endforeach(SRC_FILE)
|
||||
endmacro()
|
||||
|
||||
@@ -153,6 +172,26 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
if (EXTRA_DEFINES_LIST)
|
||||
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
|
||||
endif()
|
||||
|
||||
# Handle the MPI separately
|
||||
if (MFEM_USE_MPI)
|
||||
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
|
||||
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
|
||||
@@ -397,9 +436,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
break()
|
||||
endif()
|
||||
endforeach()
|
||||
if (Required AND NOT ${ReqPack}_FOUND)
|
||||
if (${Required} AND NOT ${ReqPack}_FOUND)
|
||||
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
|
||||
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
@@ -465,18 +504,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
endif()
|
||||
get_target_property(IsImported ${TargetName} IMPORTED)
|
||||
if (IsImported)
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
|
||||
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
|
||||
if (NOT ImportConfig)
|
||||
set(ImportConfig RELEASE)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if (_Index EQUAL -1)
|
||||
list(GET ImpConfigs 0 ImportConfig)
|
||||
endif()
|
||||
endif()
|
||||
set(ImportConfigSuffix "_${ImportConfig}")
|
||||
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
set(ImportConfig "NO_CONFIG")
|
||||
set(ImportConfigSuffix "")
|
||||
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
|
||||
@@ -494,8 +529,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
else()
|
||||
# Set _Pack_LIBS from the target properties for ImportConfig
|
||||
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
|
||||
INTERFACE_LINK_LIBRARIES)
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
|
||||
get_target_property(_value ${TargetName} ${_prop})
|
||||
if (_value)
|
||||
list(APPEND _Pack_LIBS ${_value})
|
||||
@@ -746,7 +780,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
|
||||
endforeach()
|
||||
endif()
|
||||
set(AddInterfaceLinkLibs TRUE)
|
||||
if ("${type}" STREQUAL "STATIC_LIBRARY")
|
||||
get_target_property(Location ${tgt} LOCATION)
|
||||
if (Location)
|
||||
@@ -768,27 +801,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
|
||||
endif()
|
||||
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
|
||||
# The INTERFACE_LINK_LIBRARIES property is handled below.
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
set(AddInterfaceLinkLibs FALSE)
|
||||
endif()
|
||||
if (AddInterfaceLinkLibs)
|
||||
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
|
||||
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
|
||||
if (Libs)
|
||||
foreach(Lib ${Libs})
|
||||
if (NOT (TARGET ${Lib}))
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
endif()
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
list(APPEND CompileOpts ${COpts})
|
||||
@@ -796,6 +813,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
endif()
|
||||
endforeach()
|
||||
endif()
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
endif()
|
||||
|
||||
# Other potentially relevant properties:
|
||||
@@ -819,9 +843,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
|
||||
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
|
||||
|
||||
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
|
||||
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
|
||||
|
||||
endfunction(mfem_get_target_options)
|
||||
|
||||
|
||||
@@ -848,7 +869,7 @@ function(mfem_export_mk_files)
|
||||
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
|
||||
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_IPOPT MFEM_USE_GSLIB MFEM_USE_CUDA
|
||||
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
|
||||
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
|
||||
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
|
||||
@@ -873,7 +894,7 @@ function(mfem_export_mk_files)
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
endforeach()
|
||||
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
|
||||
|
||||
+3
-22
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,30 +30,11 @@
|
||||
#endif
|
||||
|
||||
// Windows specific options
|
||||
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
|
||||
#ifdef _WIN32
|
||||
#ifndef _USE_MATH_DEFINES
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
// Macro MFEM_EXPORT: this macro is used when declaring exported global
|
||||
// variables and static class variables in public header files, e.g.:
|
||||
// extern MFEM_EXPORT Geometry Geometries;
|
||||
// static MFEM_EXPORT Device device_singleton;
|
||||
// In cases where a class contains multiple static variables, instead of marking
|
||||
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
|
||||
// e.g.:
|
||||
// class MFEM_EXPORT MemoryManager ...
|
||||
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
|
||||
// variable that needs MFEM_EXPORT does not have it. However, builds with
|
||||
// optional external libraries are not tested and may require separate checks to
|
||||
// determine the necessity of MFEM_EXPORT.
|
||||
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
|
||||
#ifdef mfem_EXPORTS
|
||||
#define MFEM_EXPORT __declspec(dllexport)
|
||||
#else
|
||||
#define MFEM_EXPORT __declspec(dllimport)
|
||||
#endif
|
||||
#else
|
||||
#define MFEM_EXPORT
|
||||
#endif
|
||||
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
|
||||
// the following macro allows us to get M_PI and some needed functions, e.g.
|
||||
|
||||
+20
-23
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,18 +30,15 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// The absolute path of the MFEM source prefix.
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix.
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
// #define MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
@@ -91,7 +88,7 @@
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
// #define MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
// Enable MFEM functionality based on the SuperLU library.
|
||||
// #define MFEM_USE_SUPERLU
|
||||
// #define MFEM_USE_SUPERLU5
|
||||
|
||||
@@ -102,40 +99,40 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// Enable MFEM features based on the Ginkgo library
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// #define MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable secure socket streams based on the GNUTLS library
|
||||
// #define MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
// Enable Sidre support
|
||||
// #define MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
// #define MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
// Enable FMS support
|
||||
// #define MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
// Enable Conduit support
|
||||
// #define MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files)
|
||||
// #define MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
@@ -144,7 +141,10 @@
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
// #define MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the IPOPT library.
|
||||
// #define MFEM_USE_IPOPT
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
// #define MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
@@ -186,13 +186,10 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
// #define MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
// #define MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
// #define MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
// #define MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
|
||||
+2
-2
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -46,6 +46,7 @@ MFEM_USE_FMS = @MFEM_USE_FMS@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_PUMI = @MFEM_USE_PUMI@
|
||||
MFEM_USE_HIOP = @MFEM_USE_HIOP@
|
||||
MFEM_USE_IPOPT = @MFEM_USE_IPOPT@
|
||||
MFEM_USE_GSLIB = @MFEM_USE_GSLIB@
|
||||
MFEM_USE_CUDA = @MFEM_USE_CUDA@
|
||||
MFEM_USE_HIP = @MFEM_USE_HIP@
|
||||
@@ -57,7 +58,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
|
||||
MFEM_USE_SIMD = @MFEM_USE_SIMD@
|
||||
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
|
||||
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
|
||||
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
|
||||
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
|
||||
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
|
||||
+11
-12
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
|
||||
endif()
|
||||
|
||||
# MFEM options. Set to mimic the default "defaults.mk" file.
|
||||
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
|
||||
@@ -49,6 +48,7 @@ option(MFEM_USE_FMS "Enable FMS usage" OFF)
|
||||
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
|
||||
option(MFEM_USE_PUMI "Enable PUMI" OFF)
|
||||
option(MFEM_USE_HIOP "Enable HiOp" OFF)
|
||||
option(MFEM_USE_IPOPT "Enable Ipopt" OFF)
|
||||
option(MFEM_USE_CUDA "Enable CUDA" OFF)
|
||||
option(MFEM_USE_HIP "Enable HIP" OFF)
|
||||
option(MFEM_USE_OCCA "Enable OCCA" OFF)
|
||||
@@ -60,7 +60,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
|
||||
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
|
||||
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
|
||||
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
|
||||
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
|
||||
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
@@ -135,18 +134,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
|
||||
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
|
||||
"Additional packages required by ParMETIS.")
|
||||
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
|
||||
"Path to the SuperLU_DIST library.")
|
||||
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
|
||||
"LAPACK" "BLAS" CACHE STRING
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
"Additional packages required by SuperLU_DIST.")
|
||||
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
|
||||
"Path to the MUMPS library.")
|
||||
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
|
||||
# Packages required by MUMPS, depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
|
||||
"Additional packages required by MUMPS.")
|
||||
# If the MPI package does not find all required Fortran libraries:
|
||||
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
@@ -224,13 +221,15 @@ set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
|
||||
"Directory where HiOp is installed")
|
||||
set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
|
||||
"Packages that HiOp depends on.")
|
||||
set(IPOPT_DIR "${MFEM_DIR}/../ipopt/install" CACHE STRING
|
||||
"Directory where IpOpt is installed")
|
||||
set(IPOPT_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
|
||||
"Packages that IpOpt depends on.")
|
||||
|
||||
set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
|
||||
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
|
||||
|
||||
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
|
||||
|
||||
+12
-17
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
|
||||
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
|
||||
# gfx900, gfx1010, etc.
|
||||
HIP_ARCH = gfx900
|
||||
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
|
||||
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
|
||||
HIP_XCOMPILER =
|
||||
HIP_XLINKER = -Wl,
|
||||
|
||||
@@ -148,6 +148,7 @@ MFEM_USE_FMS = NO
|
||||
MFEM_USE_CONDUIT = NO
|
||||
MFEM_USE_PUMI = NO
|
||||
MFEM_USE_HIOP = NO
|
||||
MFEM_USE_IPOPT = NO
|
||||
MFEM_USE_GSLIB = NO
|
||||
MFEM_USE_CUDA = NO
|
||||
MFEM_USE_HIP = NO
|
||||
@@ -160,7 +161,6 @@ MFEM_USE_UMPIRE = NO
|
||||
MFEM_USE_SIMD = NO
|
||||
MFEM_USE_ADIOS2 = NO
|
||||
MFEM_USE_MKL_CPARDISO = NO
|
||||
MFEM_USE_MKL_PARDISO = NO
|
||||
MFEM_USE_MOONOLITH = NO
|
||||
MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
@@ -267,9 +267,6 @@ endif
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
SUNDIALS_LIB += -lsundials_nveccuda
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvechip
|
||||
endif
|
||||
# If SUNDIALS was built with KLU:
|
||||
# MFEM_USE_SUITESPARSE = YES
|
||||
|
||||
@@ -288,10 +285,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
|
||||
-lsuperlu_dist_5.1.0
|
||||
else
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
|
||||
-lsuperlu_dist $(LAPACK_LIB)
|
||||
-lsuperlu_dist -lblas
|
||||
endif
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
@@ -315,7 +312,7 @@ MPI_FORTRAN_LIB = -lmpifort
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
@@ -451,6 +448,11 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
|
||||
HIOP_OPT = -I$(HIOP_DIR)/include
|
||||
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
|
||||
|
||||
# IPOPT
|
||||
IPOPT_DIR = @MFEM_DIR@/../ipopt/install
|
||||
IPOPT_OPT = -I$(IPOPT_DIR)/include
|
||||
IPOPT_LIB = -L$(IPOPT_DIR)/lib -lipopt $(LAPACK_LIB)
|
||||
|
||||
# CoDiPack
|
||||
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
|
||||
CODIPACK_OPT = -I$(CODIPACK_DIR)
|
||||
@@ -488,6 +490,7 @@ ifdef GOTCHA_DIR
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
|
||||
endif
|
||||
|
||||
|
||||
# BLITZ library configuration
|
||||
BLITZ_DIR = @MFEM_DIR@/../blitz
|
||||
BLITZ_OPT = -I$(BLITZ_DIR)/include
|
||||
@@ -542,14 +545,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# MKL Pardiso library configuration
|
||||
MKL_PARDISO_DIR ?=
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
|
||||
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# PARELAG library configuration
|
||||
PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
|
||||
# copyright check
|
||||
copyright=true
|
||||
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
|
||||
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^3]\|[^2].\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2023:"
|
||||
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2022:"
|
||||
cat matches.txt
|
||||
copyright=false
|
||||
fi
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
+11
-3
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -58,6 +58,10 @@ groups_serial=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp"'
|
||||
'"ipopt"
|
||||
"IpOpt examples:"
|
||||
"examples/ipopt"
|
||||
"ex10.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
@@ -138,7 +142,7 @@ groups_parallel=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp pminimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
@@ -215,6 +219,10 @@ groups_all=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp ex9p.cpp"'
|
||||
'"ipopt"
|
||||
"IpOpt examples:"
|
||||
"examples/ipopt"
|
||||
"ex10.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
@@ -227,7 +235,7 @@ groups_all=(
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
|
||||
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,46 +0,0 @@
|
||||
MFEM NURBS mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# SEGMENT = 1
|
||||
# SQUARE = 3
|
||||
# CUBE = 5
|
||||
#
|
||||
|
||||
dimension
|
||||
1
|
||||
|
||||
elements
|
||||
1
|
||||
1 1 0 1
|
||||
|
||||
boundary
|
||||
2
|
||||
1 0 0
|
||||
2 0 1
|
||||
|
||||
edges
|
||||
1
|
||||
0 0 1
|
||||
|
||||
vertices
|
||||
2
|
||||
|
||||
knotvectors
|
||||
1
|
||||
1 2 0 0 1 1
|
||||
|
||||
weights
|
||||
1
|
||||
1
|
||||
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: NURBS1
|
||||
VDim: 1
|
||||
Ordering: 1
|
||||
|
||||
0
|
||||
1
|
||||
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v4.5.3
|
||||
PROJECT_NUMBER = v4.5.1
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
@@ -785,6 +785,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/examples/caliper \
|
||||
@MFEM_SOURCE_DIR@/examples/ginkgo \
|
||||
@MFEM_SOURCE_DIR@/examples/hiop \
|
||||
@MFEM_SOURCE_DIR@/examples/ipopt \
|
||||
@MFEM_SOURCE_DIR@/examples/moonolith \
|
||||
@MFEM_SOURCE_DIR@/examples/petsc \
|
||||
@MFEM_SOURCE_DIR@/examples/pumi \
|
||||
@@ -795,7 +796,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/common \
|
||||
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
|
||||
@MFEM_SOURCE_DIR@/miniapps/gslib \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/kernels \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/materials \
|
||||
@@ -811,10 +811,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/shifted \
|
||||
@MFEM_SOURCE_DIR@/miniapps/solvers \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tools \
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys \
|
||||
@MFEM_SOURCE_DIR@/miniapps/spde \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg/util
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys
|
||||
|
||||
# This tag can be used to specify the character encoding of the source files
|
||||
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
|
||||
|
||||
@@ -39,7 +39,7 @@ namespace mfem {
|
||||
* - Device
|
||||
* - Memory
|
||||
* - MemoryManager
|
||||
* - mfem::forall functions in forall.hpp
|
||||
* - MFEM_FORALL macro in forall.hpp
|
||||
*
|
||||
* <H3>Example codes</H3>
|
||||
* - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
|
||||
@@ -186,7 +186,6 @@ namespace mfem {
|
||||
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
|
||||
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
|
||||
* - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
|
||||
* - <a class="el" href="mesh-quality_8cpp_source.html">Mesh Quality</a>: visualize and check mesh quality
|
||||
* - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
|
||||
* - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
|
||||
* - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
|
||||
@@ -199,15 +198,12 @@ namespace mfem {
|
||||
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
|
||||
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
|
||||
* - <a class="el" href="extrapolate_8cpp_source.html">Extrapolation</a>: PDE-based extrapolation of finite element functions
|
||||
* - <a class="el" href="block-solvers_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
|
||||
* - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
|
||||
* - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
*
|
||||
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
|
||||
*/
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
+6
-10
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -161,15 +161,6 @@ if (MFEM_ENABLE_TESTING)
|
||||
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
|
||||
# If MUMPS is enabled, add a test run that uses it.
|
||||
if (MFEM_USE_MUMPS)
|
||||
add_test(NAME ex25p_mumps_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Include the examples/amgx directory if AmgX is enabled
|
||||
@@ -187,6 +178,11 @@ if (MFEM_USE_HIOP)
|
||||
add_subdirectory(hiop)
|
||||
endif()
|
||||
|
||||
# Include the examples/ipopt directory if IpOpt is enabled
|
||||
if (MFEM_USE_IPOPT)
|
||||
add_subdirectory(ipopt)
|
||||
endif()
|
||||
|
||||
# Include the examples/petsc directory if PETSc is enabled.
|
||||
if (MFEM_USE_PETSC)
|
||||
add_subdirectory(petsc)
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -0,0 +1,810 @@
|
||||
// Contact example
|
||||
//
|
||||
// Compile with: make contact
|
||||
//
|
||||
// Sample runs: ./contact -m1 block1.mesh -m2 block2.mesh -at "5 6 7 8"
|
||||
// Sample runs: ./contact -m1 block1_d.mesh -m2 block2_d.mesh -at "5 6 7 8"
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include "nodepair.hpp"
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
bool ifequalarray(const Array<int> a1, const Array<int> a2)
|
||||
{
|
||||
if (a1.Size()!=a2.Size())
|
||||
{
|
||||
return false;
|
||||
}
|
||||
for (int i=0; i<a1.Size(); i++)
|
||||
{
|
||||
if (a1[i] != a2[i])
|
||||
{
|
||||
return false;
|
||||
}
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
void FindSurfaceToProject(Mesh& mesh, const int elem, int& cbdrface)
|
||||
{
|
||||
Array<int> attr;
|
||||
attr.Append(2);
|
||||
Array<int> faces;
|
||||
Array<int> ori;
|
||||
std::vector<Array<int> > facesVertices;
|
||||
std::vector<int > faceid;
|
||||
mesh.GetElementFaces(elem, faces, ori);
|
||||
int face = -1;
|
||||
for (int i=0; i<faces.Size(); i++)
|
||||
{
|
||||
face = faces[i];
|
||||
Array<int> faceVert;
|
||||
if (!mesh.FaceIsInterior(face)) // if on the boundary
|
||||
{
|
||||
mesh.GetFaceVertices(face, faceVert);
|
||||
faceVert.Sort();
|
||||
facesVertices.push_back(faceVert);
|
||||
faceid.push_back(face);
|
||||
}
|
||||
}
|
||||
int bdrface = facesVertices.size();
|
||||
|
||||
Array<int> bdryFaces;
|
||||
// This shoulnd't need to be rebuilt
|
||||
std::vector<Array<int> > bdryVerts;
|
||||
for (int b=0; b<mesh.GetNBE(); ++b)
|
||||
{
|
||||
if (attr.FindSorted(mesh.GetBdrAttribute(b)) >= 0) // found the contact surface
|
||||
{
|
||||
bdryFaces.Append(b);
|
||||
Array<int> vert;
|
||||
mesh.GetBdrElementVertices(b, vert);
|
||||
vert.Sort();
|
||||
bdryVerts.push_back(vert);
|
||||
}
|
||||
}
|
||||
|
||||
int bdrvert = bdryVerts.size();
|
||||
cbdrface = -1; // the face number of the contact surface element
|
||||
int count_cbdrface = 0; // the number of matching surfaces, used for checks
|
||||
|
||||
for (int i=0; i<bdrface; i++)
|
||||
{
|
||||
for (int j=0; j<bdrvert; j++)
|
||||
{
|
||||
if (ifequalarray(facesVertices[i], bdryVerts[j]))
|
||||
{
|
||||
cbdrface = faceid[i];
|
||||
count_cbdrface += 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_VERIFY(count_cbdrface == 1,"projection surface not found");
|
||||
|
||||
};
|
||||
|
||||
Vector GetNormalVector(Mesh & mesh, const int elem, const double *ref,
|
||||
int & refFace, int & refNormal, bool & interior)
|
||||
{
|
||||
ElementTransformation *trans = mesh.GetElementTransformation(elem);
|
||||
const int dim = mesh.Dimension();
|
||||
const int spaceDim = trans->GetSpaceDim();
|
||||
|
||||
MFEM_VERIFY(spaceDim == 3, "");
|
||||
|
||||
Vector n(spaceDim);
|
||||
|
||||
IntegrationPoint ip;
|
||||
ip.Set(ref, dim);
|
||||
|
||||
trans->SetIntPoint(&ip);
|
||||
//CalcOrtho(trans->Jacobian(), n); // Works only for face transformations
|
||||
const DenseMatrix jac = trans->Jacobian();
|
||||
|
||||
int dimNormal = -1;
|
||||
int normalSide = -1;
|
||||
|
||||
const double tol = 1.0e-8;
|
||||
for (int i=0; i<dim; ++i)
|
||||
{
|
||||
const double d0 = std::abs(ref[i]);
|
||||
const double d1 = std::abs(ref[i] - 1.0);
|
||||
|
||||
const double d = std::min(d0, d1);
|
||||
// TODO: this works only for hexahedral meshes!
|
||||
|
||||
if (d < tol)
|
||||
{
|
||||
MFEM_VERIFY(dimNormal == -1, "");
|
||||
dimNormal = i;
|
||||
|
||||
if (d0 < tol)
|
||||
{
|
||||
normalSide = 0;
|
||||
}
|
||||
else
|
||||
{
|
||||
normalSide = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
// closest point on the boundary
|
||||
if (dimNormal < 0 || normalSide < 0) // node is inside the element
|
||||
{
|
||||
interior = 1;
|
||||
Vector n(3);
|
||||
n = 0.0;
|
||||
return n;
|
||||
}
|
||||
|
||||
MFEM_VERIFY(dimNormal >= 0 && normalSide >= 0, "");
|
||||
refNormal = dimNormal;
|
||||
|
||||
MFEM_VERIFY(dim == 3, "");
|
||||
|
||||
{
|
||||
// Find the reference face
|
||||
if (dimNormal == 0)
|
||||
{
|
||||
refFace = (normalSide == 1) ? 2 : 4;
|
||||
}
|
||||
else if (dimNormal == 1)
|
||||
{
|
||||
refFace = (normalSide == 1) ? 3 : 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
refFace = (normalSide == 1) ? 5 : 0;
|
||||
}
|
||||
}
|
||||
|
||||
std::vector<Vector> tang(2);
|
||||
|
||||
int tangDir[2] = {-1, -1};
|
||||
{
|
||||
int t = 0;
|
||||
for (int i=0; i<dim; ++i)
|
||||
{
|
||||
if (i != dimNormal)
|
||||
{
|
||||
tangDir[t] = i;
|
||||
t++;
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_VERIFY(t == 2, "");
|
||||
}
|
||||
|
||||
for (int i=0; i<2; ++i)
|
||||
{
|
||||
tang[i].SetSize(3);
|
||||
|
||||
Vector tangRef(3);
|
||||
tangRef = 0.0;
|
||||
tangRef[tangDir[i]] = 1.0;
|
||||
|
||||
jac.Mult(tangRef, tang[i]);
|
||||
}
|
||||
|
||||
Vector c(3); // Cross product
|
||||
|
||||
c[0] = (tang[0][1] * tang[1][2]) - (tang[0][2] * tang[1][1]);
|
||||
c[1] = (tang[0][2] * tang[1][0]) - (tang[0][0] * tang[1][2]);
|
||||
c[2] = (tang[0][0] * tang[1][1]) - (tang[0][1] * tang[1][0]);
|
||||
|
||||
c /= c.Norml2();
|
||||
|
||||
Vector nref(3);
|
||||
nref = 0.0;
|
||||
nref[dimNormal] = 1.0;
|
||||
|
||||
Vector ndir(3);
|
||||
jac.Mult(nref, ndir);
|
||||
|
||||
ndir /= ndir.Norml2();
|
||||
|
||||
const double dp = ndir * c;
|
||||
|
||||
// TODO: eliminate c?
|
||||
n = c;
|
||||
if (dp < 0.0)
|
||||
{
|
||||
n *= -1.0;
|
||||
}
|
||||
interior = 0;
|
||||
return n;
|
||||
}
|
||||
|
||||
// WARNING: global variable, just for this little example.
|
||||
std::array<std::array<int, 3>, 8> HEX_VERT =
|
||||
{
|
||||
{ {0,0,0},
|
||||
{1,0,0},
|
||||
{1,1,0},
|
||||
{0,1,0},
|
||||
{0,0,1},
|
||||
{1,0,1},
|
||||
{1,1,1},
|
||||
{0,1,1}
|
||||
}
|
||||
};
|
||||
|
||||
int GetHexVertex(int cdim, int c, int fa, int fb, Vector & refCrd)
|
||||
{
|
||||
int ref[3];
|
||||
ref[cdim] = c;
|
||||
ref[cdim == 0 ? 1 : 0] = fa;
|
||||
ref[cdim == 2 ? 1 : 2] = fb;
|
||||
|
||||
for (int i=0; i<3; ++i) { refCrd[i] = ref[i]; }
|
||||
|
||||
int refv = -1;
|
||||
|
||||
for (int i=0; i<8; ++i)
|
||||
{
|
||||
bool match = true;
|
||||
for (int j=0; j<3; ++j)
|
||||
{
|
||||
if (ref[j] != HEX_VERT[i][j]) { match = false; }
|
||||
}
|
||||
|
||||
if (match) { refv = i; }
|
||||
}
|
||||
|
||||
MFEM_VERIFY(refv >= 0, "");
|
||||
|
||||
return refv;
|
||||
}
|
||||
|
||||
// Coordinates in xyz are assumed to be ordered as [X, Y, Z]
|
||||
// where X is the list of x-coordinates for all points and so on.
|
||||
// conn: connectivity of the target surface elements
|
||||
// xi: surface reference cooridnates for the cloest point, involves a linear transformation from [0,1] to [-1,1]
|
||||
void FindPointsInMesh(Mesh & mesh, Vector const& xyz, Array<int>& conn,
|
||||
Vector& xi)
|
||||
{
|
||||
const int dim = mesh.Dimension();
|
||||
const int np = xyz.Size() / dim;
|
||||
|
||||
MFEM_VERIFY(np * dim == xyz.Size(), "");
|
||||
|
||||
mesh.EnsureNodes();
|
||||
|
||||
//FindPointsGSLIB finder(MPI_COMM_WORLD);
|
||||
FindPointsGSLIB finder;
|
||||
|
||||
finder.SetDistanceToleranceForPointsFoundOnBoundary(0.5);
|
||||
|
||||
const double bb_t = 0.5;
|
||||
finder.Setup(mesh, bb_t);
|
||||
|
||||
finder.FindPoints(xyz);
|
||||
|
||||
/// Return code for each point searched by FindPoints: inside element (0), on
|
||||
/// element boundary (1), or not found (2).
|
||||
Array<unsigned int> codes = finder.GetCode();
|
||||
|
||||
/// Return element number for each point found by FindPoints.
|
||||
Array<unsigned int> elems = finder.GetElem();
|
||||
|
||||
/// Return reference coordinates for each point found by FindPoints.
|
||||
Vector refcrd = finder.GetReferencePosition();
|
||||
|
||||
/// Return distance between the sought and the found point in physical space,
|
||||
/// for each point found by FindPoints.
|
||||
Vector dist = finder.GetDist();
|
||||
|
||||
MFEM_VERIFY(dist.Size() == np, "");
|
||||
MFEM_VERIFY(refcrd.Size() == np * dim, "");
|
||||
MFEM_VERIFY(elems.Size() == np, "");
|
||||
MFEM_VERIFY(codes.Size() == np, "");
|
||||
|
||||
bool allfound = true;
|
||||
for (auto code : codes)
|
||||
if (code == 2) { allfound = false; }
|
||||
|
||||
MFEM_VERIFY(allfound, "A point was not found");
|
||||
|
||||
cout << "Maximum distance of projected points: " << dist.Max() << endl;
|
||||
|
||||
// extract information
|
||||
for (int i=0; i<np; ++i)
|
||||
{
|
||||
/*cout << "Point " << i << ": (";
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
cout << xyz[i + (j*np)];
|
||||
if (j == dim-1) {cout << ")" << endl;}
|
||||
else{cout << ", ";}
|
||||
}*/
|
||||
//cout << " element: " << elems[i] << endl;
|
||||
//cout << " element " << elems[i] << " vertices:" << endl;
|
||||
//Array<int> vert;
|
||||
//mesh.GetElementVertices(elems[i], vert);
|
||||
//for (auto v : vert)
|
||||
//{
|
||||
// cout << " " << v << endl;
|
||||
//}
|
||||
|
||||
/*cout << " reference coordinates: (";
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
cout << refcrd[(i*dim) + j];
|
||||
if (j == dim-1)
|
||||
{
|
||||
cout << ")" << endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << ", ";
|
||||
}
|
||||
}*/
|
||||
|
||||
int refFace, refNormal, refNormalSide;
|
||||
bool is_interior = -1;
|
||||
Vector normal = GetNormalVector(mesh, elems[i], refcrd.GetData() + (i*dim),
|
||||
refFace, refNormal, is_interior);
|
||||
int phyFace;
|
||||
if (is_interior)
|
||||
{
|
||||
phyFace = -1; // the id of the face that has the closest point
|
||||
FindSurfaceToProject(mesh, elems[i], phyFace);
|
||||
|
||||
Array<int> cbdrVert;
|
||||
mesh.GetFaceVertices(phyFace, cbdrVert);
|
||||
Vector xs(dim);
|
||||
xs[0] = xyz[i + 0*np];
|
||||
xs[1] = xyz[i + 1*np];
|
||||
xs[2] = xyz[i + 2*np];
|
||||
Vector xi_tmp(dim-1);
|
||||
// get nodes!
|
||||
|
||||
GridFunction *nodes = mesh.GetNodes();
|
||||
DenseMatrix coords(4,3);
|
||||
for (int i=0; i<4; i++)
|
||||
{
|
||||
for (int j=0; j<3; j++)
|
||||
{
|
||||
coords(i,j) = (*nodes)[cbdrVert[i]*3+j];
|
||||
}
|
||||
}
|
||||
SlaveToMaster(coords, xs, xi_tmp);
|
||||
|
||||
for (int j=0; j<dim-1; ++j)
|
||||
{
|
||||
xi[i*(dim-1)+j] = xi_tmp[j];
|
||||
}
|
||||
// now get get the projection to the surface
|
||||
}
|
||||
else
|
||||
{
|
||||
Vector faceRefCrd(dim-1);
|
||||
{
|
||||
int fd = 0;
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
if (j == refNormal)
|
||||
{
|
||||
refNormalSide = (refcrd[(i*dim) + j] > 0.5);
|
||||
}
|
||||
else
|
||||
{
|
||||
faceRefCrd[fd] = refcrd[(i*dim) + j];
|
||||
fd++;
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_VERIFY(fd == dim-1, "");
|
||||
}
|
||||
|
||||
for (int j=0; j<dim-1; ++j)
|
||||
{
|
||||
xi[i*(dim-1)+j] = faceRefCrd[j]*2.0 - 1.0;
|
||||
}
|
||||
//cout << " face reference coordinates: (";
|
||||
/*for (int j=0; j<dim-1; ++j)
|
||||
{
|
||||
cout << faceRefCrd[j];
|
||||
if (j == dim-2){cout << ")" << endl;}
|
||||
else{cout << ", ";}
|
||||
}*/
|
||||
}
|
||||
//cout << " normal vector: ";
|
||||
//normal.Print();
|
||||
|
||||
// ask, does this do anything?
|
||||
/*
|
||||
IntegrationPoint ip;
|
||||
ip.Set(refcrd.GetData() + (i*dim), dim);
|
||||
ElementTransformation *trans = mesh.GetElementTransformation(elems[i]);
|
||||
Vector phys(trans->GetSpaceDim());
|
||||
trans->Transform(ip, phys);
|
||||
cout << " physical coordinates: ";
|
||||
phys.Print();
|
||||
*/
|
||||
|
||||
// Get the element face
|
||||
Array<int> faces;
|
||||
Array<int> ori;
|
||||
int face;
|
||||
|
||||
if (is_interior)
|
||||
{
|
||||
face = phyFace;
|
||||
}
|
||||
else
|
||||
{
|
||||
mesh.GetElementFaces(elems[i], faces, ori);
|
||||
face = faces[refFace];
|
||||
}
|
||||
|
||||
Array<int> faceVert;
|
||||
mesh.GetFaceVertices(face, faceVert);
|
||||
|
||||
//cout << " face " << face << " vertices:" << endl;
|
||||
//for (auto v : faceVert){ cout << " " << v << endl;}
|
||||
|
||||
for (int p=0; p<4; p++)
|
||||
{
|
||||
conn[4*i+p] = faceVert[p];
|
||||
}
|
||||
/*
|
||||
Vector ref(dim);
|
||||
|
||||
for (int p=0; p<2; ++p)
|
||||
for (int q=0; q<2; ++q)
|
||||
{
|
||||
const int refv = GetHexVertex(refNormal, refNormalSide, p, q, ref);
|
||||
cout << " face reference vertex (" << p << "," << q
|
||||
<< ") is global vertex " << vert[refv] << endl;
|
||||
|
||||
{
|
||||
// Sanity check
|
||||
ip.Set(ref.GetData(), dim);
|
||||
trans->Transform(ip, phys);
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
phys[j] -= mesh.GetVertex(vert[refv])[j];
|
||||
}
|
||||
phys.Print();
|
||||
cout<<vert[refv]<<endl;
|
||||
cout<<mesh.GetVertex(vert[refv])[0]<<endl;
|
||||
cout<<mesh.GetVertex(vert[refv])[1]<<endl;
|
||||
cout<<mesh.GetVertex(vert[refv])[2]<<endl;
|
||||
MFEM_VERIFY(phys.Norml2() < 1.0e-12, "Sanity check failed");
|
||||
}
|
||||
}*/
|
||||
}
|
||||
}
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file1 = "block1.mesh";
|
||||
const char *mesh_file2 = "block2.mesh";
|
||||
|
||||
Array<int> attr;
|
||||
Array<int> m_attr;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file1, "-m1", "--mesh1",
|
||||
"First mesh file to use.");
|
||||
args.AddOption(&mesh_file2, "-m2", "--mesh2",
|
||||
"Second mesh file to use.");
|
||||
args.AddOption(&attr, "-at", "--attributes-surf",
|
||||
"Attributes of boundary faces on contact surface for mesh 2.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
Mesh mesh1(mesh_file1, 1, 1);
|
||||
Mesh mesh2(mesh_file2, 1, 1);
|
||||
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream mesh1a_sock(vishost, visport);
|
||||
mesh1a_sock.precision(8);
|
||||
mesh1a_sock << "mesh\n" << mesh1 << flush;
|
||||
socketstream mesh2a_sock(vishost, visport);
|
||||
mesh2a_sock.precision(8);
|
||||
mesh2a_sock << "mesh\n" << mesh2 << flush;
|
||||
}
|
||||
|
||||
const int dim = mesh1.Dimension();
|
||||
MFEM_VERIFY(dim == mesh2.Dimension(), "");
|
||||
|
||||
// boundary attribute 2 is the potential contact surface of nodes
|
||||
attr.Append(2);
|
||||
// boundary attribute 2 is the potential contact surface for master surface
|
||||
m_attr.Append(2);
|
||||
|
||||
// Define a finite element space on the mesh. Here we use vector finite
|
||||
// elements, i.e. dim copies of a scalar finite element space. The vector
|
||||
// dimension is specified by the last argument of the FiniteElementSpace
|
||||
// constructor.
|
||||
FiniteElementCollection *fec1;
|
||||
FiniteElementSpace *fespace1;
|
||||
fec1 = new H1_FECollection(1, dim);
|
||||
fespace1 = new FiniteElementSpace(&mesh1, fec1, dim, Ordering::byVDIM);
|
||||
cout << "Number of finite element unknowns for mesh1: "
|
||||
<< fespace1->GetTrueVSize() << endl;
|
||||
mesh1.SetNodalFESpace(fespace1);
|
||||
GridFunction nodes0 = *mesh1.GetNodes(); // undeformed mesh1 nodal grid function
|
||||
GridFunction *nodes1 = mesh1.GetNodes();
|
||||
|
||||
FiniteElementCollection *fec2 = new H1_FECollection(1, dim);
|
||||
FiniteElementSpace *fespace2 = new FiniteElementSpace(&mesh2, fec2, dim,
|
||||
Ordering::byVDIM);
|
||||
cout << "Number of finite element unknowns for mesh2: "
|
||||
<< fespace2->GetTrueVSize() << endl;
|
||||
|
||||
// degrees of freedom of both meshes
|
||||
int ndof_1 = fespace1->GetTrueVSize();
|
||||
int ndof_2 = fespace2->GetTrueVSize();
|
||||
int ndofs = ndof_1 + ndof_2;
|
||||
// number of nodes for each mesh
|
||||
int nnd_1 = mesh1.GetNV();
|
||||
int nnd_2 = mesh2.GetNV();
|
||||
int nnd = nnd_1 + nnd_2;
|
||||
// Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined by marking only
|
||||
// boundary attribute 1 from the mesh as essential and converting it to a
|
||||
// list of true dofs.
|
||||
Array<int> ess_tdof_list1, ess_bdr1(mesh1.bdr_attributes.Max());
|
||||
ess_bdr1 = 0;
|
||||
//ess_bdr1[0] = 1;
|
||||
// Not ready to be passed on yet
|
||||
// fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
Array<int> ess_tdof_list2, ess_bdr2(mesh2.bdr_attributes.Max());
|
||||
ess_bdr2 = 0;
|
||||
//ess_bdr2[0] = 1;
|
||||
|
||||
// Define the displacement vector x as a finite element grid function
|
||||
// corresponding to fespace. GridFunction is a derived class of Vector.
|
||||
GridFunction x1(fespace1);
|
||||
x1 = 0.0;
|
||||
GridFunction x2(fespace2);
|
||||
x2 = 0.0;
|
||||
|
||||
// Generate force
|
||||
LinearForm *b1 = new LinearForm(fespace1);
|
||||
b1->Assemble();
|
||||
|
||||
LinearForm *b2 = new LinearForm(fespace2);
|
||||
b2->Assemble();
|
||||
|
||||
// Set up the bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the linear elasticity integrator with piece-wise
|
||||
// constants coefficient lambda and mu.
|
||||
Vector lambda1(mesh1.attributes.Max());
|
||||
lambda1 = 57.6923076923;
|
||||
PWConstCoefficient lambda1_func(lambda1);
|
||||
Vector mu1(mesh1.attributes.Max());
|
||||
mu1 = 38.4615384615;
|
||||
PWConstCoefficient mu1_func(mu1);
|
||||
|
||||
BilinearForm *a1 = new BilinearForm(fespace1);
|
||||
a1->AddDomainIntegrator(new ElasticityIntegrator(lambda1_func,mu1_func));
|
||||
|
||||
Vector lambda2(mesh2.attributes.Max());
|
||||
lambda2 = 57.6923076923;
|
||||
PWConstCoefficient lambda2_func(lambda2);
|
||||
Vector mu2(mesh2.attributes.Max());
|
||||
mu2 = 38.4615384615;
|
||||
PWConstCoefficient mu2_func(mu2);
|
||||
|
||||
BilinearForm *a2 = new BilinearForm(fespace2);
|
||||
a2->AddDomainIntegrator(new ElasticityIntegrator(lambda2_func,mu2_func));
|
||||
|
||||
a1->Assemble();
|
||||
SparseMatrix A1;
|
||||
Vector B1, X1;
|
||||
a1->FormLinearSystem(ess_tdof_list1, x1, *b1, A1, X1, B1);
|
||||
|
||||
a2->Assemble();
|
||||
SparseMatrix A2;
|
||||
Vector B2, X2;
|
||||
a2->FormLinearSystem(ess_tdof_list2, x2, *b2, A2, X2, B2);
|
||||
|
||||
// Combine elasticity operator for two meshes into one.
|
||||
// Block Matrix
|
||||
SparseMatrix K(ndofs,ndofs);
|
||||
for (int i=0; i<A1.Height(); i++)
|
||||
{
|
||||
Array<int> col_tmp;
|
||||
Vector v_tmp;
|
||||
col_tmp = 0;
|
||||
v_tmp = 0.0;
|
||||
A1.GetRow(i, col_tmp, v_tmp);
|
||||
K.SetRow(i, col_tmp, v_tmp);
|
||||
}
|
||||
for (int i=0; i<A2.Height(); i++)
|
||||
{
|
||||
Array<int> col_tmp;
|
||||
Vector v_tmp;
|
||||
col_tmp = 0;
|
||||
v_tmp = 0.0;
|
||||
A2.GetRow(i, col_tmp, v_tmp);
|
||||
for (int j=0; j<col_tmp.Size(); j++)
|
||||
{
|
||||
col_tmp[j] += ndof_1;
|
||||
}
|
||||
K.SetRow(i+ndof_1, col_tmp, v_tmp); // mesh1 top left corner
|
||||
}
|
||||
|
||||
// Construct node to segment contact constraint.
|
||||
|
||||
attr.Sort();
|
||||
cout << "Boundary attributes for contact surface faces in mesh 2" << endl;
|
||||
for (auto a : attr) { cout << a << endl; }
|
||||
|
||||
Array<int> bdryFaces2; // TODO: remove this?
|
||||
|
||||
std::set<int> bdryVerts2;
|
||||
for (int b=0; b<mesh2.GetNBE(); ++b)
|
||||
{
|
||||
if (attr.FindSorted(mesh2.GetBdrAttribute(b)) >= 0)
|
||||
{
|
||||
bdryFaces2.Append(b);
|
||||
Array<int> vert;
|
||||
mesh2.GetBdrElementVertices(b, vert);
|
||||
for (auto v : vert)
|
||||
{
|
||||
bdryVerts2.insert(v);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int npoints = bdryVerts2.size();
|
||||
Array<int> s_conn(npoints); // connectivity of the second/slave mesh
|
||||
Vector xyz(dim * npoints);
|
||||
xyz = 0.0;
|
||||
|
||||
cout << "Boundary vertices for contact surface vertices in mesh 2" << endl;
|
||||
|
||||
// construct the nodal coordinates on mesh2 to be projected, including displacement
|
||||
int count = 0;
|
||||
for (auto v : bdryVerts2)
|
||||
{
|
||||
cout << v << ": " << mesh2.GetVertex(v)[0] << ", "
|
||||
<< mesh2.GetVertex(v)[1] << ", "
|
||||
<< mesh2.GetVertex(v)[2] << endl;
|
||||
|
||||
for (int i=0; i<dim; ++i)
|
||||
{
|
||||
xyz[count + (i * npoints)] = mesh2.GetVertex(v)[i] + x2[v*dim+i];
|
||||
}
|
||||
|
||||
s_conn[count] = v + nnd_1; // dof1 is the master
|
||||
count++;
|
||||
}
|
||||
|
||||
MFEM_VERIFY(count == npoints, "");
|
||||
|
||||
// gap function
|
||||
Vector g(npoints*dim);
|
||||
g = -1.0;
|
||||
// segment reference coordinates of the closest point
|
||||
Vector m_xi(npoints*(dim-1));
|
||||
m_xi = -1.0;
|
||||
Vector xs(dim*npoints);
|
||||
xs = 0.0;
|
||||
for (int i=0; i<npoints; i++)
|
||||
{
|
||||
for (int j=0; j<dim; j++)
|
||||
{
|
||||
xs[i*dim+j] = xyz[i + (j*npoints)];
|
||||
}
|
||||
}
|
||||
|
||||
Array<int> m_conn(
|
||||
npoints*4); // only works for linear elements that have 4 vertices!
|
||||
DenseMatrix coordsm(npoints*4, dim);
|
||||
|
||||
// adding displacement to mesh1 using a fixed grid function from mesh1
|
||||
x1 = 1e-4; // x1 order: [xyz xyz... xyz]
|
||||
add(nodes0, x1, *nodes1);
|
||||
|
||||
FindPointsInMesh(mesh1, xyz, m_conn, m_xi);
|
||||
|
||||
for (int i=0; i<npoints; i++)
|
||||
{
|
||||
for (int j=0; j<4; j++)
|
||||
{
|
||||
for (int k=0; k<dim; k++)
|
||||
{
|
||||
coordsm(i*4+j,k) = mesh1.GetVertex(m_conn[i*4+j])[k]+x1[dim*m_conn[i*4+j]+k];
|
||||
}
|
||||
}
|
||||
}
|
||||
//coordsm.Print();
|
||||
SparseMatrix M(nnd,ndofs);
|
||||
std::vector<SparseMatrix> dM(nnd, SparseMatrix(ndofs,ndofs));
|
||||
|
||||
Assemble_Contact(nnd, npoints, ndofs, xs, m_xi, coordsm,
|
||||
s_conn, m_conn, g, M, dM);
|
||||
|
||||
std::set<int> dirbdryv2;
|
||||
for (int b=0; b<mesh2.GetNBE(); ++b)
|
||||
{
|
||||
if (mesh2.GetBdrAttribute(b) == 1)
|
||||
{
|
||||
Array<int> vert;
|
||||
mesh2.GetBdrElementVertices(b, vert);
|
||||
for (auto v : vert)
|
||||
{
|
||||
dirbdryv2.insert(v);
|
||||
}
|
||||
}
|
||||
}
|
||||
std::set<int> dirbdryv1;
|
||||
for (int b=0; b<mesh1.GetNBE(); ++b)
|
||||
{
|
||||
if (mesh1.GetBdrAttribute(b) == 1)
|
||||
{
|
||||
Array<int> vert;
|
||||
mesh1.GetBdrElementVertices(b, vert);
|
||||
for (auto v : vert)
|
||||
{
|
||||
dirbdryv1.insert(v);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Array<int> Dirichlet_dof;
|
||||
Array<double> Dirichlet_val;
|
||||
|
||||
for (auto v : dirbdryv2)
|
||||
{
|
||||
for (int i=0; i<dim; ++i)
|
||||
{
|
||||
Dirichlet_dof.Append(v*dim + i + ndof_1);
|
||||
Dirichlet_val.Append(0.);
|
||||
}
|
||||
}
|
||||
double delta = 0.1;
|
||||
for (auto v : dirbdryv1)
|
||||
{
|
||||
Dirichlet_dof.Append(v*dim + 0);
|
||||
Dirichlet_val.Append(delta);
|
||||
Dirichlet_dof.Append(v*dim + 1);
|
||||
Dirichlet_val.Append(0.);
|
||||
Dirichlet_dof.Append(v*dim + 2);
|
||||
Dirichlet_val.Append(0.);
|
||||
}
|
||||
|
||||
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream mesh1_sock(vishost, visport);
|
||||
mesh1_sock.precision(8);
|
||||
mesh1_sock << "mesh\n" << mesh1 << flush;
|
||||
socketstream mesh2_sock(vishost, visport);
|
||||
mesh2_sock.precision(8);
|
||||
mesh2_sock << "mesh\n" << mesh2 << flush;
|
||||
}
|
||||
|
||||
//M.Print();
|
||||
/*Vector eps(ndofs);
|
||||
Vector sol(ndofs); sol = 0.;
|
||||
for(int i=0;i<ndofs;i++) eps[i] = 1e-5 * i ;
|
||||
for(int i=0;i<9;i++)
|
||||
{
|
||||
cout<<i<<endl;
|
||||
dM[s_conn[i]].Mult(eps,sol);
|
||||
sol.Print();
|
||||
}
|
||||
*/
|
||||
return 0;
|
||||
}
|
||||
+3
-20
@@ -18,8 +18,6 @@
|
||||
// ex14 -m ../data/amr-quad.mesh -r 3
|
||||
// ex14 -m ../data/amr-hex.mesh
|
||||
// ex14 -m ../data/fichera-amr.mesh
|
||||
// ex14 -m ../data/inline-quad.mesh -r 2 -rk
|
||||
// ex14 -m ../data/star.mesh -r 0 -o 3 -rk
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// discontinuous Galerkin (DG) finite element discretization of
|
||||
@@ -45,11 +43,10 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int ref_levels = -1;
|
||||
int order = 1;
|
||||
bool rk = false;
|
||||
double sigma = -1.0;
|
||||
double kappa = -1.0;
|
||||
double eta = 0.0;
|
||||
bool visualization = true;
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -57,9 +54,7 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly, -1 for auto.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) >= 0 OR reproducing kernel order.");
|
||||
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
|
||||
"Use reproducing kernel functions");
|
||||
"Finite element order (polynomial degree) >= 0.");
|
||||
args.AddOption(&sigma, "-s", "--sigma",
|
||||
"One of the three DG penalty parameters, typically +1/-1."
|
||||
" See the documentation of class DGDiffusionIntegrator.");
|
||||
@@ -80,10 +75,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
kappa = (order+1)*(order+1);
|
||||
}
|
||||
if (rk && sigma < 0.0)
|
||||
{
|
||||
sigma = 1.0;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
@@ -113,15 +104,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 4. Define a finite element space on the mesh. Here we use discontinuous
|
||||
// finite elements of the specified order >= 0.
|
||||
FiniteElementCollection *fec;
|
||||
if (rk)
|
||||
{
|
||||
fec = new LocalKernelFECollection(dim, 4, 6, order, 1.01 + order, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new DG_FECollection(order, dim);
|
||||
}
|
||||
FiniteElementCollection *fec = new DG_FECollection(order, dim);
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
cout << "Number of unknowns: " << fespace->GetVSize() << endl;
|
||||
|
||||
|
||||
+1
-18
@@ -17,8 +17,6 @@
|
||||
// mpirun -np 4 ex14p -m ../data/inline-segment.mesh -rs 5
|
||||
// mpirun -np 4 ex14p -m ../data/amr-quad.mesh -rs 3
|
||||
// mpirun -np 4 ex14p -m ../data/amr-hex.mesh
|
||||
// mpirun -np 4 ex14p -m ../data/star.mesh -rs 1 -o 2 -rk
|
||||
// mpirun -np 4 ex14p -m ../data/amr-quad.mesh -rs 2 -rk
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// discontinuous Galerkin (DG) finite element discretization of
|
||||
@@ -83,7 +81,6 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = -1;
|
||||
int par_ref_levels = 2;
|
||||
int order = 1;
|
||||
bool rk = false;
|
||||
double sigma = -1.0;
|
||||
double kappa = -1.0;
|
||||
double eta = 0.0;
|
||||
@@ -99,8 +96,6 @@ int main(int argc, char *argv[])
|
||||
"Number of times to refine the mesh uniformly in parallel.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) >= 0.");
|
||||
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
|
||||
"Use reproducing kernel functions");
|
||||
args.AddOption(&sigma, "-s", "--sigma",
|
||||
"One of the three DG penalty parameters, typically +1/-1."
|
||||
" See the documentation of class DGDiffusionIntegrator.");
|
||||
@@ -124,10 +119,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
kappa = (order+1)*(order+1);
|
||||
}
|
||||
if (rk && sigma < 0.0)
|
||||
{
|
||||
sigma = 1.0;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
@@ -172,15 +163,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use discontinuous finite elements of the specified order >= 0.
|
||||
FiniteElementCollection *fec;
|
||||
if (rk)
|
||||
{
|
||||
fec = new LocalKernelFECollection(dim, 4, 6, order, 1.01 + order, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new DG_FECollection(order, dim);
|
||||
}
|
||||
FiniteElementCollection *fec = new DG_FECollection(order, dim);
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_BigInt size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
|
||||
+4
-18
@@ -9,8 +9,6 @@
|
||||
// ex18 -p 1 -r 0 -o 5 -s 6
|
||||
// ex18 -p 2 -r 1 -o 1 -s 3
|
||||
// ex18 -p 2 -r 0 -o 3 -s 3
|
||||
// ex18 -p 1 -r 1 -o 3 -s 4 -rk
|
||||
// ex18 -p 2 -r 0 -o 3 -s 3 -rk
|
||||
//
|
||||
// Description: This example code solves the compressible Euler system of
|
||||
// equations, a model nonlinear hyperbolic PDE, with a
|
||||
@@ -67,7 +65,6 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/periodic-square.mesh";
|
||||
int ref_levels = 1;
|
||||
int order = 3;
|
||||
bool rk = false;
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 2.0;
|
||||
double dt = -0.01;
|
||||
@@ -87,8 +84,6 @@ int main(int argc, char *argv[])
|
||||
"Number of times to refine the mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
|
||||
"Use reproducing kernel functions");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
|
||||
@@ -144,21 +139,13 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 5. Define the discontinuous DG finite element space of the given
|
||||
// polynomial order on the refined mesh.
|
||||
FiniteElementCollection *fec;
|
||||
if (rk)
|
||||
{
|
||||
fec = new LocalKernelFECollection(dim, 5, 7, order, 2.01 + order, 1.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new DG_FECollection(order, dim);
|
||||
}
|
||||
DG_FECollection fec(order, dim);
|
||||
// Finite element space for a scalar (thermodynamic quantity)
|
||||
FiniteElementSpace fes(&mesh, fec);
|
||||
FiniteElementSpace fes(&mesh, &fec);
|
||||
// Finite element space for a mesh-dim vector quantity (momentum)
|
||||
FiniteElementSpace dfes(&mesh, fec, dim, Ordering::byNODES);
|
||||
FiniteElementSpace dfes(&mesh, &fec, dim, Ordering::byNODES);
|
||||
// Finite element space for all variables together (total thermodynamic state)
|
||||
FiniteElementSpace vfes(&mesh, fec, num_equation, Ordering::byNODES);
|
||||
FiniteElementSpace vfes(&mesh, &fec, num_equation, Ordering::byNODES);
|
||||
|
||||
// This example depends on this ordering of the space.
|
||||
MFEM_ASSERT(fes.GetOrdering() == Ordering::byNODES, "");
|
||||
@@ -317,7 +304,6 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Free the used memory.
|
||||
delete ode_solver;
|
||||
delete fec;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+4
-18
@@ -9,8 +9,6 @@
|
||||
// mpirun -np 4 ex18p -p 1 -rs 1 -rp 1 -o 5 -s 6
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 1 -s 3
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 3 -s 3
|
||||
// mpirun -np 4 ex18p -p 1 -rs 1 -rp 0 -o 3 -s 4 -rk
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 0 -o 3 -s 3 -rk
|
||||
//
|
||||
// Description: This example code solves the compressible Euler system of
|
||||
// equations, a model nonlinear hyperbolic PDE, with a
|
||||
@@ -72,7 +70,6 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = 0;
|
||||
int par_ref_levels = 1;
|
||||
int order = 3;
|
||||
bool rk = false;
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 2.0;
|
||||
double dt = -0.01;
|
||||
@@ -96,8 +93,6 @@ int main(int argc, char *argv[])
|
||||
" partitioning.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&rk, "-rk", "--rk", "-no-rk", "--no-rk",
|
||||
"Use reproducing kernel functions");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
|
||||
@@ -166,21 +161,13 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 7. Define the discontinuous DG finite element space of the given
|
||||
// polynomial order on the refined mesh.
|
||||
FiniteElementCollection *fec;
|
||||
if (rk)
|
||||
{
|
||||
fec = new LocalKernelFECollection(dim, 5, 7, order, 2.01 + order, 1.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new DG_FECollection(order, dim);
|
||||
}
|
||||
DG_FECollection fec(order, dim);
|
||||
// Finite element space for a scalar (thermodynamic quantity)
|
||||
ParFiniteElementSpace fes(&pmesh, fec);
|
||||
ParFiniteElementSpace fes(&pmesh, &fec);
|
||||
// Finite element space for a mesh-dim vector quantity (momentum)
|
||||
ParFiniteElementSpace dfes(&pmesh, fec, dim, Ordering::byNODES);
|
||||
ParFiniteElementSpace dfes(&pmesh, &fec, dim, Ordering::byNODES);
|
||||
// Finite element space for all variables together (total thermodynamic state)
|
||||
ParFiniteElementSpace vfes(&pmesh, fec, num_equation, Ordering::byNODES);
|
||||
ParFiniteElementSpace vfes(&pmesh, &fec, num_equation, Ordering::byNODES);
|
||||
|
||||
// This example depends on this ordering of the space.
|
||||
MFEM_ASSERT(fes.GetOrdering() == Ordering::byNODES, "");
|
||||
@@ -388,7 +375,6 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Free the used memory.
|
||||
delete ode_solver;
|
||||
delete fec;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+7
-13
@@ -246,23 +246,17 @@ int main(int argc, char *argv[])
|
||||
e_var /= (nsteps + 1);
|
||||
double e_sd = sqrt(e_var);
|
||||
|
||||
double e_loc_stats[2];
|
||||
double *e_stats = (myid == 0) ? new double[2 * num_procs] : (double*)NULL;
|
||||
|
||||
e_loc_stats[0] = e_mean;
|
||||
e_loc_stats[1] = e_sd;
|
||||
MPI_Gather(e_loc_stats, 2, MPI_DOUBLE, e_stats, 2, MPI_DOUBLE, 0, comm);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << endl << "Mean and standard deviation of the energy "
|
||||
<< "for different initial conditions" << endl;
|
||||
for (int i = 0; i < num_procs; i++)
|
||||
cout << endl << "Mean and standard deviation of the energy" << endl;
|
||||
}
|
||||
for (int i = 0; i < num_procs; i++)
|
||||
{
|
||||
if (myid == i)
|
||||
{
|
||||
cout << i << ": " << e_stats[2 * i + 0]
|
||||
<< "\t" << e_stats[2 * i + 1] << endl;
|
||||
cout << myid << ": " << e_mean << "\t" << e_sd << endl;
|
||||
}
|
||||
delete [] e_stats;
|
||||
MPI_Barrier(comm);
|
||||
}
|
||||
|
||||
// 9. Finalize the GnuPlot output
|
||||
|
||||
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Reference in New Issue
Block a user