Compare commits

..
Author SHA1 Message Date
Socratis Petrides bc39660801 minor bug 2023-05-31 11:00:58 -07:00
Frank Wang a72cd6b7a8 remove comments 2023-04-07 18:43:48 -07:00
Frank Wang bcc308b263 fixing bugs 2023-04-07 18:43:09 -07:00
nychiang 23b5e402e3 clean code 2023-04-04 16:40:28 -07:00
nychiang ee0dd42064 code style 2023-04-04 12:14:57 -07:00
nychiang 39a78ff3df IPOPT in mfem 2023-04-04 00:09:53 -07:00
Frank Wang 20460cafda add bc 2023-03-31 10:57:16 -07:00
Frank Wang 2f188e9fcf fix bug 2023-03-29 10:29:51 -07:00
Frank Wang e772d71ecb update 2023-03-24 21:43:41 -07:00
Frank Wang d9c4cad220 latest update 2023-03-21 12:35:20 -07:00
Frank Wang 0c572d4779 comment out nodepair for now 2023-03-16 13:44:16 -07:00
Frank Wang 4320ad2272 adding things needed for Jacobian computation 2023-03-16 13:42:17 -07:00
Dylan Copeland 5c09d2b4c9 Added computation of face reference coordinates, as well as the global vertex indices corresponding to the corners of the face. 2023-03-15 20:16:36 -07:00
Dylan Copeland 65e75e271b Enabling an example with points outside domain 1. 2023-03-15 17:35:55 -07:00
Frank Wang f8e5fe77e6 update contact 2023-03-12 19:07:25 -07:00
Frank Wang 4ff880f0cf remove binary 2023-03-10 11:04:44 -08:00
Frank Wang a1f57a6375 adding x field 2023-03-10 10:28:01 -08:00
Dylan Copeland 5ffb605333 Fixing contact example. 2023-03-08 18:52:04 -08:00
Frank Wang f8ea695e13 add contactcpp 2023-03-08 12:02:01 -08:00
1103 changed files with 31945 additions and 95478 deletions
+8 -14
View File
@@ -31,7 +31,7 @@ install:
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
- cmake -H. -Bbuild
# -DCMAKE_BUILD_TYPE=Release
- cmake --build build --target metis -j 4
- cmake --build build
- set METIS_PATH=%cd%
- cd ..
@@ -40,7 +40,7 @@ install:
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild
- cmake --build build -j 4
- cmake --build build
- cmake --build build --target install
- cd ../..
@@ -49,20 +49,14 @@ install:
# MFEM
before_build:
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
build_script:
- cmake --build build_parallel --config Debug -j 4
# - cmake --build build_serial --config Release -j 4
# - cmake --build build_serial --target exec --config Release -j 4
- cmake --build build_shared_serial --config Release -j 4
- cmake --build build_shared_serial --target exec --config Release -j 4
- cmake --build build_parallel --config Release -j 4
- cmake --build build_serial --config Release -j 4
- cmake --build build_serial --target exec --config Release -j 4
after_build:
# - cd build_serial
# - ctest -C Release --output-on-failure
# - cd ..
- cd build_shared_serial
- cd build_serial
- ctest -C Release --output-on-failure
@@ -1,6 +1,7 @@
name: "Docker"
on:
# Always have a base image ready to go - this is a nightly build
schedule:
- cron: 0 3 * * *
@@ -25,6 +26,7 @@ jobs:
strategy:
fail-fast: false
matrix:
# Dockerfiles to build, a matrix supports future expanded builds
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
@@ -32,20 +34,15 @@ jobs:
runs-on: ubuntu-latest
name: Build
steps:
- name: Run Actions Cleaner
uses: easimon/maximize-build-space@v8
with:
overprovision-lvm: 'true'
remove-dotnet: 'true'
remove-android: 'true'
remove-haskell: 'true'
remove-codeql: 'true'
remove-docker-images: 'true'
- name: Checkout
uses: actions/checkout@v4
uses: actions/checkout@v3
# It's easier to reference named variables than indexes of the matrix
- name: Make Space For Build
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf /opt/ghc
# It's easier to reference named variables than indexes of the matrix
- name: Set Environment
env:
dockerfile: ${{ matrix.container[0] }}
+156 -176
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -65,31 +65,21 @@ jobs:
# - Add a new combination.
# 'build-system: cmake' and 'hypre-target: int64'
#
# Note: we will gather coverage info for any non-debug run except the
# note: we will gather coverage info for any non-debug run except the
# CMake build.
include:
- target: dbg
codecov: NO
- target: opt
codecov: YES
- os: ubuntu-latest
target: dbg
config-opts: 'CPPFLAGS+=-Og'
- os: windows-latest
codecov: NO
- os: windows-latest
target: opt
mpi: par
config-opts: '-DBUILD_SHARED_LIBS=ON'
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: cmake
hypre-target: int32
# This option can be set to pass additional configuration options to
# the MFEM configuration command.
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
- os: ubuntu-latest
target: opt
codecov: NO
@@ -101,189 +91,179 @@ jobs:
runs-on: ${{ matrix.os }}
steps:
# This external action allows to interrupt a workflow already running on
# the same branch to save resources.
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
# This external action allows to interrupt a workflow already running on
# the same branch to save resource
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
# Fix 'No space left on device' errors for Ubuntu builds.
- name: Run Actions Cleaner
if: matrix.os == 'ubuntu-latest'
uses: easimon/maximize-build-space@v8
with:
overprovision-lvm: 'true'
remove-android: 'true'
# Checkout MFEM in "mfem" subdirectory. Final path:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v3
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
fetch-depth: 0
# Checkout MFEM in "mfem" subdirectory. Final path:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v4
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
fetch-depth: 0
# Only get MPI if defined for the job.
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install mpich libmpich-dev
# Only get MPI if defined for the job.
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install mpich libmpich-dev
- name: get lcov (Linux)
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install lcov
- name: get lcov (Linux)
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install lcov
# Keep the following section in case we need it again in the future,
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
# - name: Set up Homebrew
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
# uses: Homebrew/actions/setup-homebrew@master
# Keep the following section in case we need it again in the future,
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
# - name: Set up Homebrew
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
# uses: Homebrew/actions/setup-homebrew@master
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
- name: get lcov (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install lcov
- name: get lcov (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install lcov
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.1.4
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.1.4
# Get Hypre through cache, or build it.
# Install will only run on cache miss.
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v3
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
# Get Hypre through cache, or build it.
# Install will only run on cache miss.
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v4
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: make
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.4
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: make
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: cmake
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.4
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: cmake
# Get Metis through cache, or build it.
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v3
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
# Get Metis through cache, or build it.
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v4
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.4
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v3
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v4
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
- name: prepare vcpkg binary cache location (Windows)
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
run: |
mkdir -p vcpkg_cache
- name: prepare vcpkg binary cache location (Windows)
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
run: |
mkdir -p vcpkg_cache
- name: install metis (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
- name: install metis (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.2
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
os: ${{ matrix.os }}
target: ${{ matrix.target }}
codecov: ${{ matrix.codecov }}
mpi: ${{ matrix.mpi }}
build-system: ${{ matrix.build-system }}
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
library-only: ${{ matrix.target == 'dbg' }}
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.4
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
os: ${{ matrix.os }}
target: ${{ matrix.target }}
codecov: ${{ matrix.codecov }}
mpi: ${{ matrix.mpi }}
build-system: ${{ matrix.build-system }}
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
config-options: ${{ matrix.config-opts }}
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
# Run checks (and only checks) on debug targets
- name: checks
if: matrix.build-system == 'make' && matrix.target == 'dbg'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make check
# Run checks (and only checks) on debug targets
- name: checks
if: matrix.build-system == 'make' && matrix.target == 'dbg'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make check
# Note: 'tests' include the unit tests
- name: tests
if: matrix.build-system == 'make' && matrix.target == 'opt'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
# Note: 'tests' include the unit tests
- name: tests
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
- name: cmake checks
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
run: |
CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
shell: bash
- name: cmake checks
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
run: |
CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
shell: bash
- name: cmake unit tests (Ubuntu)
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake unit tests (Ubuntu)
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake tests
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake tests
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && \
ctest --output-on-failure -C ${CTEST_CONFIG} || \
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
shell: bash
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.4
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.2
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
+28 -27
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@@ -13,10 +13,10 @@ name: "Static Analysis"
on:
push:
branches: ["master", "next"]
branches: [ "master", "next"]
pull_request:
# The branches below must be a subset of the branches above
branches: ["master"]
branches: [ "master" ]
jobs:
analyze:
@@ -35,35 +35,36 @@ jobs:
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Checkout repository
uses: actions/checkout@v3
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
# If the Autobuild fails above, remove it and uncomment the following three lines.
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
# - run: |
# echo "Run, Build Application using script"
# ./location_of_script_within_repo/buildscript.sh
# If the Autobuild fails above, remove it and uncomment the following three lines.
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
# - run: |
# echo "Run, Build Application using script"
# ./location_of_script_within_repo/buildscript.sh
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
+56 -56
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -34,67 +34,67 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
- name: checkout MFEM
uses: actions/checkout@v4
with:
path: mfem
- name: checkout MFEM
uses: actions/checkout@v3
with:
path: mfem
- name: Get MPI (Linux)
run: |
sudo apt-get install mpich libmpich-dev
- name: Get MPI (Linux)
run: |
sudo apt-get install mpich libmpich-dev
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v4
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v3
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.4
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v4
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v3
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.4
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.4
with:
os: ${{ runner.os }}
target: opt
codecov: NO
mpi: par
build-system: make
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: mfem
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.2
with:
os: ${{ runner.os }}
target: opt
codecov: NO
mpi: par
build-system: make
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: mfem
- name: test (no clean)
run: |
cd mfem && make test-noclean
- name: test (no clean)
run: |
cd mfem && make test-noclean
- name: gitignore
run: |
cd mfem/tests/scripts
./runtest gitignore
- name: gitignore
run: |
cd mfem/tests/scripts
./runtest gitignore
-70
View File
@@ -1,70 +0,0 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Sanitizer"
permissions:
actions: write
on:
push:
branches:
- master
- next
pull_request:
workflow_dispatch:
jobs:
Serial:
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
- name: MFEM Checkout
uses: actions/checkout@v4
with:
path: mfem
- name: MFEM Build
uses: mfem/github-actions/build-mfem@v2.4
with:
os: ${{ runner.os }}
target: opt
mpi: seq
hypre-dir: unused-hypre-dir
metis-dir: unused-metis-dir
mfem-dir: mfem
build-system: make
library-only: false
config-options:
CXX="clang++-14"
CXXFLAGS="-g -O1 -std=c++11
-fsanitize=address
-fno-omit-frame-pointer
-fsanitize-address-use-after-scope"
- name: MFEM Info
working-directory: mfem
run: make info
- name: MFEM Sanitize
working-directory: mfem
run:
ASAN_OPTIONS="detect_leaks=1,
strict_init_order=1,
strict_string_checks=1,
check_initialization_order=1,
detect_stack_use_after_return=1"
make test
+71 -81
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -33,59 +33,49 @@ jobs:
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
- name: checkout mfem
uses: actions/checkout@v4
- name: checkout mfem
uses: actions/checkout@v3
- name: copyright check
id: copyright
run: |
./config/githooks/pre-push --copyright
- name: copyright check
id: copyright
run: |
./config/githooks/pre-push --copyright
continue-on-error: true
continue-on-error: true
- name: license check
id: license
run: |
./config/githooks/pre-push --license
continue-on-error: true
- name: license check
id: license
run: |
./config/githooks/pre-push --license
continue-on-error: true
- name: release check
id: release
run: |
./config/githooks/pre-push --release
continue-on-error: true
- name: release check
id: release
run: |
./config/githooks/pre-push --release
continue-on-error: true
- name: math check
id: math
run: |
./config/githooks/pre-push --math
continue-on-error: true
- name: wrap-up
if: |
steps.copyright.outcome != 'success' ||
steps.license.outcome != 'success' ||
steps.release.outcome != 'success' ||
steps.math.outcome != 'success'
run: |
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
echo "copyright check failed, unroll log for details"
fi
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
echo "license check failed, unroll log for details"
fi
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
echo "release check failed, unroll log for details"
fi
if [[ "${{ steps.math.outcome }}" != "success" ]]; then
echo "math check failed, unroll log for details"
fi
exit 1
- name: wrap-up
if: |
steps.copyright.outcome != 'success' ||
steps.license.outcome != 'success' ||
steps.release.outcome != 'success'
run: |
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
echo "copyright check failed, unroll log for details"
fi
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
echo "license check failed, unroll log for details"
fi
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
echo "release check failed, unroll log for details"
fi
exit 1
code-style:
runs-on: ubuntu-latest
@@ -93,16 +83,16 @@ jobs:
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
- name: checkout mfem
uses: actions/checkout@v3
- name: get astyle
run: |
sudo apt-get install astyle
- name: get astyle
run: |
sudo apt-get install astyle
- name: style check
run: |
./config/githooks/pre-push --style
- name: style check
run: |
./config/githooks/pre-push --style
documentation:
runs-on: ubuntu-latest
@@ -110,22 +100,22 @@ jobs:
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
- name: checkout mfem
uses: actions/checkout@v3
- name: get doxygen and graphviz
run: |
sudo apt-get install doxygen graphviz
- name: get doxygen and graphviz
run: |
sudo apt-get install doxygen graphviz
- name: update doxygen config file
run: |
cd doc
doxygen -u CodeDocumentation.conf.in
- name: update doxygen config file
run: |
cd doc
doxygen -u CodeDocumentation.conf.in
- name: build documentation
run: |
cd tests/scripts
./runtest documentation
- name: build documentation
run: |
cd tests/scripts
./runtest documentation
branch-history:
if: |
@@ -135,16 +125,16 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-latest
steps:
- name: checkout mfem
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: checkout mfem
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: branch-history
run: |
# We override origin to make sure we point to the main repo.
# This is to have consistent test results on PRs from forks.
git remote remove origin
git remote add origin https://github.com/mfem/mfem.git
git checkout -b gh-actions-branch-history
./config/githooks/pre-push --history
- name: branch-history
run: |
# We override origin to make sure we point to the main repo.
# This is to have consistent test results on PRs from forks.
git remote remove origin
git remote add origin https://github.com/mfem/mfem.git
git checkout -b gh-actions-branch-history
./config/githooks/pre-push --history
+14 -63
View File
@@ -21,15 +21,11 @@ CMakeFiles/
# Default install location
/mfem/
# Typical build directory
/build/
# Generated files in main directory, config/ and docs/
/deps.mk
config/_config.hpp
config/config.mk
config/sample-runs-build.log
config/user.cmake
config/user.mk
doc/CodeDocumentation.conf
doc/CodeDocumentation.html
@@ -113,12 +109,6 @@ examples/ex25p-*.*
examples/ex28_*
examples/ex28p_*
examples/flux.*
examples/dsol.*
examples/cond.*
examples/cond_j.*
examples/cond_mesh.*
examples/port_mesh.*
examples/port_mode.*
examples/amgx/ex1
examples/amgx/ex1p
@@ -128,16 +118,11 @@ examples/amgx/sol.gf
examples/amgx/mesh.*
examples/amgx/sol.*
examples/caliper/ex1
examples/caliper/ex1p
examples/caliper/refined.mesh
examples/caliper/sol.gf
examples/caliper/mesh.*
examples/caliper/sol.*
examples/ginkgo/ex1
examples/ginkgo/refined.mesh
examples/ginkgo/sol.gf
examples/gingko/ex1
examples/gingko/refined.mesh
examples/gingko/sol.gf
examples/gingko/mesh.*
examples/gingko/sol.*
examples/hiop/ex9
examples/hiop/ex9p
@@ -146,6 +131,12 @@ examples/hiop/ex9-mesh.*
examples/hiop/ex9-init.*
examples/hiop/ex9-final.*
examples/ipopt/exContactBlockTL
examples/ipopt/exContactBlockTL.mesh
examples/ipopt/exContactBlockTL-mesh.*
examples/ipopt/exContactBlockTL-init.*
examples/ipopt/exContactBlockTL-final.*
examples/petsc/ex[1-69]p
examples/petsc/ex1[0-1]p
examples/petsc/mesh.*
@@ -163,8 +154,8 @@ examples/petsc/velocity.*
examples/petsc/elastic_energy.*
examples/petsc/mode_*
examples/pumi/ex[12]
examples/pumi/ex[16]p
examples/pumi/ex1
examples/pumi/ex[126]p
examples/pumi/refined.mesh
examples/pumi/sol.gf
examples/pumi/mesh.*
@@ -209,9 +200,6 @@ miniapps/gslib/field-diff
miniapps/gslib/field-interp
miniapps/gslib/findpts
miniapps/gslib/pfindpts
miniapps/gslib/schwarz_ex1
miniapps/gslib/schwarz_ex1p
miniapps/gslib/interpolated.gf
miniapps/meshing/mobius-strip
miniapps/meshing/klein-bottle
@@ -220,16 +208,13 @@ miniapps/meshing/twist
miniapps/meshing/mesh-explorer
miniapps/meshing/shaper
miniapps/meshing/extruder
miniapps/meshing/fit-node-position
miniapps/meshing/trimmer
miniapps/meshing/reflector
miniapps/meshing/mesh-optimizer
miniapps/meshing/pmesh-optimizer
miniapps/meshing/pmesh-fitting
miniapps/meshing/minimal-surface
miniapps/meshing/pminimal-surface
miniapps/meshing/polar-nc
miniapps/meshing/mesh-quality
miniapps/meshing/mobius-strip.mesh
miniapps/meshing/klein-bottle.mesh
miniapps/meshing/toroid-*.mesh
@@ -266,27 +251,17 @@ miniapps/navier/navier_tgv
miniapps/navier/navier_shear
miniapps/navier/navier_3dfoc
miniapps/navier/navier_turbchan
miniapps/navier/navier_cht
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_printfunc
miniapps/nurbs/nurbs_patch_ex1
miniapps/nurbs/nurbs_curveint
miniapps/nurbs/refined.mesh
miniapps/nurbs/mesh.*
miniapps/nurbs/sol.*
miniapps/nurbs/mode_*
miniapps/nurbs/Example1*
miniapps/nurbs/sin-fit.mesh
miniapps/nurbs/CurveInt
miniapps/nurbs/nurbs_naca_cmesh
miniapps/nurbs/naca-cmesh.mesh
miniapps/nurbs/glvis_naca-cmesh.mesh
miniapps/nurbs/Naca_cmesh
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -309,14 +284,9 @@ miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
miniapps/tools/get-values
miniapps/tools/tmop-check-metric
miniapps/tools/check-tmop-metric
miniapps/tools/tmop-metric-magnitude
miniapps/tools/nodal-transfer
miniapps/tools/ParaView
miniapps/tools/gridfunc_*
miniapps/tools/mesh_*
miniapps/toys/automata
miniapps/toys/life
@@ -342,33 +312,16 @@ miniapps/toys/mondrian.mesh
miniapps/solvers/block-solvers
miniapps/solvers/lor_solvers
miniapps/solvers/plor_solvers
miniapps/solvers/lor_elast
miniapps/solvers/ParaView
miniapps/solvers/mesh.*
miniapps/solvers/sol.*
miniapps/hdiv-linear-solver/darcy
miniapps/hdiv-linear-solver/grad_div
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/multidomain/multidomain
miniapps/hooke/hooke
miniapps/dpg/diffusion
miniapps/dpg/pdiffusion
miniapps/dpg/convection-diffusion
miniapps/dpg/pconvection-diffusion
miniapps/dpg/acoustics
miniapps/dpg/pacoustics
miniapps/dpg/maxwell
miniapps/dpg/pmaxwell
miniapps/dpg/ParaView
miniapps/spde/generate_random_field
miniapps/spde/ParaView
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
@@ -381,8 +334,6 @@ tests/unit/tmop_pa_tests_*
tests/unit/ptmop_pa_tests_*
tests/unit/ceed_tests
tests/unit/debug_device_tests
tests/unit/parallel_in_serial.mesh
tests/unit/parallel_in_serial.gf
# Benchmark binaries
tests/benchmarks/bench_ceed
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+11 -7
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,10 +22,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -55,10 +57,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+6 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -47,10 +47,12 @@ setup_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+12 -8
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,11 +35,13 @@ setup:
(
date
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
# try every 5 seconds; we may want to add a counter for the number of
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/mfem-data.lock'"
date
@@ -67,10 +69,12 @@ setup:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,14 +14,14 @@ stages:
- build_and_test
- report
opt_mpi_cuda_xl_16_1_1_12:
opt_mpi_cuda_xl_16_1_1_8:
variables:
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
extends: .build_and_test_on_lassen
opt_mpi_cuda_hypre_cuda_xl:
variables:
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
extends: .build_and_test_on_lassen
# Jobs report
+10 -12
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -51,8 +51,6 @@ cleanup:
script:
- echo "BUILD_ROOT=${BUILD_ROOT}"
- rm -rf "${BUILD_ROOT}" || true
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
- make -C "${CI_PROJECT_DIR}" distclean
report_baseline:
extends: [.on_quartz]
@@ -68,10 +66,12 @@ report_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -82,14 +82,12 @@ report_baseline:
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
fi
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
>> ${rundir}/pipeline.txt
# We create an autotest-email.html file, because that's how we signal
# that there was an error / diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
fi
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
+21 -16
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -23,43 +23,48 @@ allocate_resource:
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=pdebug --time=45 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
# GitLab jobs for the Quartz machine at LLNL
debug_ser_gcc_10:
debug_ser_gcc_4_9_3:
variables:
SPEC: "%gcc@10.3.1 +debug~mpi"
SPEC: "%gcc@4.9.3 +debug~mpi"
extends: .build_and_test_on_quartz
debug_par_gcc_10:
debug_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +debug+mpi"
SPEC: "%gcc@6.1.0 +debug~mpi"
extends: .build_and_test_on_quartz
opt_ser_gcc_10:
debug_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 ~mpi"
SPEC: "%gcc@6.1.0 +debug+mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10:
opt_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1"
SPEC: "%gcc@6.1.0 ~mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10_sundials:
opt_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +sundials"
SPEC: "%gcc@6.1.0"
extends: .build_and_test_on_quartz
opt_par_gcc_10_petsc:
opt_par_gcc_6_1_0_sundials:
variables:
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
SPEC: "%gcc@6.1.0 +sundials"
extends: .build_and_test_on_quartz
opt_par_gcc_10_pumi:
opt_par_gcc_6_1_0_petsc:
variables:
SPEC: "%gcc@10.3.1 +pumi"
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
extends: .build_and_test_on_quartz
opt_par_gcc_6_1_0_pumi:
variables:
SPEC: "%gcc@6.1.0 +pumi"
extends: .build_and_test_on_quartz
# Release
+29 -16
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -42,34 +42,47 @@ fi
# post
mkdir ${artifacts_path}
status=0
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
if [[ -s ${glob_err} ]]; then
echo "ERROR during ${BASELINE_TEST} execution"
echo "Here is the ${glob_err} file content"
if [[ -s ${glob_err} ]]
then
echo "ERROR during ${BASELINE_TEST} execution";
echo "Here is the ${glob_err} file content";
cat ${glob_err}
cp ${glob_err} ${artifacts_path}/${glob_err}
status=1
fi
if [[ -f ${base_patch} ]]; then
exit 1;
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
then
echo "Something went WRONG in ${BASELINE_TEST}:";
echo "Either ${base_patch} or ${base_out} should exists";
exit 1;
elif [[ -f ${base_patch} ]]
then
echo "${BASELINE_TEST}: Differences found, patch generated"
cp ${base_patch} ${artifacts_path}/${base_patch}
elif [[ -f ${base_out} ]]; then
elif [[ -f ${base_out} ]]
then
echo "${BASELINE_TEST}: Differences found, replacement file generated"
cp ${base_out} ${artifacts_path}/${base_out}
fi
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
# base_diff won't even exist if there is no difference.
if [[ -f ${base_diff} ]]; then
if [[ -f ${base_diff} ]]
then
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
cat ${base_diff}
cp ${base_diff} ${artifacts_path}/${base_diff}
status=1
# We create a .err file, because that's how we signal that there was a diff.
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
fi
if [[ $status -eq 0 ]]; then
if [[ ! -s ${base_diff} ]]
then
echo "${BASELINE_TEST}: PASSED"
true
else
echo "${BASELINE_TEST}: FAILED"
false
fi
exit $status
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+36 -207
View File
@@ -8,230 +8,61 @@
https://mfem.org
Version 4.6.1 (development)
Version 4.5.1 (development)
===========================
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
Meshing improvements
--------------------
- Introduced formulas for refinement of patches in NURBS meshes. Refinement by
arbitrary integer factors is also enabled, e.g. in the mesh-explorer miniapp.
NURBS coarsening and knot removal are also introduced.
Discretization improvements
---------------------------
- Introduced support for higher order non conformal Nedelec elements on
simplices in ParMesh.
- Introduced support for internal boundary elements in nonconformal adapted
meshes.
- Added functionality for construction of cut-surface and cut-volume
IntegrationRules through a moment-fitting approach. The cut is specified by
the zero level set of a Coefficient. See fem/intrules_cut.hpp and Example 38.
GPU support
----------------------------
- Added support for full assembly on simplices.
- Added functionality for BilinearFormIntegrators to use kernels that work for both
tensor and unstructured elements.
- Added partial assembly for linear elasticity. Does not use sum factorization for now.
New and updated examples and miniapps
-------------------------------------
- Added a new block solver in miniapp/solvers for the Darcy problem.
The new solver is based on a Bramble-Pasciak preconditioning. User can
use and implement their own preconditioner for the mass matrix.
- Added miniapp to demonstrate new elasticity integrator and unstructured element GPU support,
and a block diagonal preconditioner using low order refinement. Allows comparison with
currently existing legacy mode integrator. See miniapps/solvers/lor_elast.
Miscellaneous
-------------
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
- Updated the Doxygen documentation style, which now requires Doxygen version
1.9.8 or later. See the doc/ directory.
- Improved thread safety for global variables in the library, for example
IntegrationRules IntRules, RefinedIntRules, GeometryRefiner
GlobGeometryRefiner, and FiniteElement::dof2quad_array.
Version 4.6, released on September 27, 2023
===========================================
- MFEM is now available in Homebrew and can be installed on a Mac with just
"brew install mfem". See https://formulae.brew.sh/formula/mfem.
Meshing improvements
--------------------
- Added asymptotically-balanced TMOP compound metrics 90, 94, 328, 338. A new
tool, tmop-metric-magnitude, can be used to track how metrics change under
geometric perturbations. See miniapps/tools.
- Several NURBS meshing improvements:
* Support for free connectivity of NURBS patches allowing for more complex
patch configurations such as C-meshes.
* New methods to set and get attributes on NURBS patches and patch boundaries.
* The edge to knot map for NURBS meshes can be determined automatically. It is
no longer needed to specify this in the NURBS mesh.
* Added curve interpolation method for NURBS.
* Added new small miniapp for printing of shape functions of a KnotVector
* See miniapps/nurbs for example meshes and miniapps.
Discretization improvements
---------------------------
- SubMesh and ParSubMesh have been extended to support the transfer of
Nedelec and Raviart-Thomas finite element spaces.
- Added support for partial assembly on NURBS patches, and NURBS-patch sparse
matrix assembly. Patch matrix assembly includes the option to use reduced
approximate integration rules, computed by the newly implemented non-negative
least-squares (NNLS) solver.
- Support for parallel transfer of H1 fields using the low-order refined (LOR)
transfer operators in L2ProjectionGridTransfer
- Added KDTree class for 2D/3D set of points, which is then utilized in the new
KDTreeNodalProjection class to project a function defined on an arbitrary set
of points onto an MFEM grid function. This functionality is demonstrated in
the nodal-transfer miniapp. The current implementation is serial only. Further
extensions can include search in arbitrary dimensional spaces.
- Added support for p-refined meshes in GSLIB-FindPoints.
- Device kernels can now access device-specific DOF and quadrature limits using
the DofQuadLimits structure, allowing increased limits when executing on CPU.
The limits for the runtime selected device can be accessed in host code using
DeviceDofQuadLimits::Get(). The global constants MAX_D1D and MAX_Q1D are no
longer available.
- Face restriction operators for Nedelec and Raviart-Thomas finite element
spaces are now supported through the ConformingFaceRestriction class.
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
Linear and nonlinear solvers
----------------------------
- Updated the MUMPS interface to support multiple right-hand sides, block
low-rank compression, builds using 64-bit integers, and other improvements.
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
The interface provides a serial (OpenMP shared memory) version of Pardiso for
use with SparseMatrix. This complements the existing parallel (MPI distributed
memory) version already available through the CPardiso MFEM integration.
- Added HIP support to the PETSc and SUNDIALS interfaces.
- Efficient GPU-accelerated LOR assembly now supports surface meshes.
New and updated examples and miniapps
-------------------------------------
- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
saddle-point solver methodology, suitable for high-order discretizations and
for GPU acceleration. Examples illustrating the solution of Darcy and grad-div
problems are included. See miniapps/hdiv-linear-solver.
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
and parallel examples for diffusion, convection-diffusion, acoustics and
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
integrators are added in support of DPG systems: TraceIntegrator,
NormalTraceIntegrator and TangentTraceIntegrator. See miniapps/dpg.
- Added a new miniapp that implements the SPDE method for generating Gaussian
random fields of Matern covariance. The resulting random field can be used,
e.g., to model material uncertainties. See miniapps/spde.
- Added a new parallel LOR transfer miniapp, plor-transfer, which mirrors the
functionality of the serial LOR transfer miniapp. See miniapps/tools.
- New serial miniapp, nodal-transfer, demonstrating the use of KDTree to map a
parallel grid function to a different parallel partitioning of the same mesh.
- Added 3 additional TMOP miniapps in miniapps/meshing:
* Mesh-Quality evaluates quality using size, skewness, and aspect-ratio
computed from the Jacobian of the transformation.
* Mesh-Fitting can be used for interface and boundary fitting to implicit
domains defined using level-set functions.
* Fit-Node-Position fits selected mesh nodes to specified positions, while
maintaining overall mesh quality.
- Added 4 new example codes:
* Example 34/34p solves a simple magnetostatic problem where source terms and
boundary conditions are transferred with SubMesh objects.
* Example 35p implements H1, H(curl) and H(div) variants of a damped harmonic
oscillator with field transfer using SubMesh objects.
* Example 36/36p demonstrates the solution of the obstacle problem with a new
finite element method (proximal Galerkin).
* Example 37/37p demonstrates topology optimization with MFEM.
- Added a random refinement option to the mesh-explorer miniapp to assist users
in experimenting with nonconforming meshes.
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
Miscellaneous
-------------
- Improved lambda body debugging with the addition of mfem::forall functions.
These functions can take the place of the MFEM_FORALL macros, which have been
preserved for backwards compatibility.
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
in the fem/integ/ subdirectory.
- FiniteElementSpace::GetFE has been updated to abort instead of returning NULL for
an empty partition.
- Various other simplifications, extensions, and bugfixes in the code.
Version 4.5.2, released on March 23, 2023
=========================================
- Added support for pyramids in non-conforming meshes. Currently only isotropic
refinement is supported in this case.
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
domain boundary.
- Added an option to auto-balance compound TMOP metrics.
- Added support for pyramids in Gmsh meshes.
- Fixed a bug in TMOP metric 301.
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
- Added an option to auto-balance compound TMOP metrics.
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
face-neighbor elements.
Discretization improvements
---------------------------
- TBD
- Added support for pyramids in Gmsh meshes.
Linear and nonlinear solvers
----------------------------
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection. See option 'D' in the menu.
New and updated examples and miniapps
-------------------------------------
- Added a new meshing miniapp, reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
- VisItDataCollection now correctly handles data collection names containing
underscores.
- The mesh-explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection objects. See option 'D' in the
main menu.
- Added support for shared Windows builds with MSVC through CMake.
Developers note: this enhancement is facilitated by the addition of the macro
MFEM_EXPORT, see config.hpp for more details on its usage.
Integrations, testing and documentation
---------------------------------------
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- The following integrations have updated minimum version requirements:
* RAJA >= 2022.10.3
Miscellaneous
-------------
- VisItDataCollection now correctly handles collection names containing
underscores.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with
VisItDataCollection::SetPadDigitsRank().
API changes
-----------
- The implicit cast methods of class Vector to 'double *' and 'const double *'
@@ -242,11 +73,6 @@ API changes
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
should be used instead.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with SetPadDigitsRank().
Version 4.5, released on October 22, 2022
=========================================
@@ -290,6 +116,9 @@ Discretization improvements
- Added a class CoefficientVector for efficient access of variable coefficient
values at quadrature points (in particular for GPU/device kernels).
- Added support for GridFunction::GetGradients() and
GriFunction::GetVectorGradient() on face-neighbor elements.
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
spatial Gaussian white noise.
+36 -91
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -13,24 +13,19 @@
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
# Version 3.8 or newer is required for direct CUDA support.
cmake_minimum_required(VERSION 3.8)
message(STATUS "CMake version: ${CMAKE_VERSION}")
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
"Path to optional user configuration file.")
# Require C++11 and disable compiler-specific extensions
set(CMAKE_CXX_STANDARD 11 CACHE STRING "C++ standard to use.")
set(CMAKE_CXX_STANDARD_REQUIRED ON CACHE BOOL
"Force the use of the chosen C++ standard.")
set(CMAKE_CXX_EXTENSIONS OFF CACHE BOOL "Enable C++ standard extensions.")
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
# Load user settings before the defaults - this way the defaults will not
# overwrite the user set options. If the user has not set all options, we still
# have the defaults.
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
if (USER_CONFIG_LOADED)
set(USER_CONFIG_LOADED "LOADED")
endif()
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
include("${USER_CONFIG}" OPTIONAL)
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
@@ -58,7 +53,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.6.1)
set(${PROJECT_NAME}_VERSION 4.5.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -83,7 +78,7 @@ if (MFEM_USE_CONDUIT OR
# * find_package(PETSc REQUIRED)
set(XSDK_ENABLE_C ON)
endif()
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
if (MFEM_USE_STRUMPACK)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
@@ -94,7 +89,7 @@ if ((MFEM_USE_SUNDIALS OR
MFEM_USE_RAJA OR
MFEM_USE_UMPIRE) AND
("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14 CACHE STRING "C++ standard to use." FORCE)
set(CMAKE_CXX_STANDARD 14)
endif()
# Include xSDK default CMake file.
@@ -105,8 +100,7 @@ enable_language(CXX)
if (MINGW)
# MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
# 25/25p) unless we use '-std=gnu++11':
set(CMAKE_CXX_EXTENSIONS ON
CACHE BOOL "Enable C++ standard extensions." FORCE)
set(CMAKE_CXX_EXTENSIONS ON)
endif()
if (MFEM_USE_CUDA)
if (MFEM_USE_HIP)
@@ -117,11 +111,9 @@ if (MFEM_USE_CUDA)
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
endif()
enable_language(CUDA)
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
"CUDA standard to use.")
set(CMAKE_CUDA_STANDARD_REQUIRED ON CACHE BOOL
"Force the use of the chosen CUDA standard.")
set(CMAKE_CUDA_EXTENSIONS OFF CACHE BOOL "Enable CUDA standard extensions.")
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CUDA_FLAGS "--expt-extended-lambda")
if (CMAKE_VERSION VERSION_LESS 3.18.0)
set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
@@ -142,10 +134,11 @@ if (MFEM_USE_CUDA)
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
endif()
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
find_package(CUDAToolkit REQUIRED)
set(CMAKE_CUDA_FLAGS ${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS})
set(CUSPARSE_FOUND TRUE)
get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
set(CUSPARSE_LIBRARIES "cusparse")
set(CUBLAS_FOUND TRUE)
set(CUBLAS_LIBRARIES "cublas")
endif()
if (XSDK_ENABLE_C)
@@ -190,23 +183,6 @@ else()
set(MFEM_DEBUG OFF)
endif()
# Shared build on Windows
if (WIN32 AND BUILD_SHARED_LIBS)
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
"Automatically export symbols for shared Windows DLL build")
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
# the build directory, so that the .exe files can find the .dll files at
# runtime:
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
# Note: CMake tests are run from the build-tree sub-directory where the test
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
# work fine.
# Not strictly necessary:
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
endif()
# AMD HIP
if (MFEM_USE_HIP)
if (HIP_ARCH)
@@ -320,9 +296,6 @@ if (MFEM_USE_SUNDIALS)
if (MFEM_USE_CUDA)
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
endif()
if (MFEM_USE_HIP)
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
endif()
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
endif()
@@ -339,7 +312,6 @@ endif()
if (MFEM_USE_MUMPS)
if (MFEM_USE_MPI)
find_package(MUMPS REQUIRED mumps_common pord)
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
else()
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
endif()
@@ -432,6 +404,15 @@ if (MFEM_USE_HIOP)
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
endif()
# IpOpt optimizer
if (MFEM_USE_IPOPT)
find_package(IPOPT REQUIRED)
message(
STATUS
"IPOPT_INCLUDE_DIRS=${IPOPT_INCLUDE_DIRS}, IPOPT_LIBRARIES=${IPOPT_LIBRARIES}, IPOPT_DIR=${IPOPT_DIR}")
# find_package updates IPOPT_FOUND, IPOPT_INCLUDE_DIRS, IPOPT_LIBRARIES
endif()
# CoDiPack package
if (MFEM_USE_CODIPACK)
find_package(CODIPACK REQUIRED)
@@ -473,18 +454,12 @@ if (MFEM_USE_ADIOS2)
find_package(ADIOS2 REQUIRED)
endif()
# MKL CPardiso
if (MFEM_USE_MKL_CPARDISO)
if (MFEM_USE_MPI)
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
endif()
endif()
# MKL Pardiso
if (MFEM_USE_MKL_PARDISO)
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
endif()
# PARELAG
if (MFEM_USE_PARELAG)
find_package(PARELAG REQUIRED)
@@ -533,9 +508,9 @@ find_package(Threads REQUIRED)
# be before SuiteSparse.
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
NETCDF MPFR PUMI HIOP IPOPT POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
@@ -553,7 +528,6 @@ list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
@@ -609,19 +583,7 @@ target_include_directories(mfem
PUBLIC
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
# The INSTALL_INTERFACE is handled below
${TPL_INCLUDE_DIRS})
if (MFEM_USE_MPI)
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
endif()
endif()
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
@@ -633,7 +595,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
endif()
# Generate configuration file in the build directory: config/_config.hpp.
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
configure_file(
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
"${PROJECT_BINARY_DIR}/config/_config.hpp")
@@ -644,34 +605,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
foreach(Header mfem.hpp mfem-performance.hpp)
message(STATUS
"Writing substitute header --> \"${Header}\"")
file(WRITE "${PROJECT_BINARY_DIR}/${Header}.tmp"
file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
"// Auto-generated file.
#define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
#include \"${PROJECT_SOURCE_DIR}/${Header}\"
")
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different
"${PROJECT_BINARY_DIR}/${Header}.tmp"
"${PROJECT_BINARY_DIR}/${Header}"
)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove
"${PROJECT_BINARY_DIR}/${Header}.tmp"
)
# This version will be installed in the top include directory:
file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
"// Auto-generated file.
#include \"mfem/${Header}\"
")
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
)
endforeach()
endif()
@@ -771,7 +714,7 @@ set(INSTALL_LIB_DIR lib
set(INSTALL_CMAKE_DIR lib/cmake/mfem
CACHE PATH "Relative path for installing cmake config files.")
target_include_directories(mfem BEFORE
target_include_directories(mfem
PUBLIC
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
@@ -823,8 +766,10 @@ endif()
# Install the configuration header files
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
${PROJECT_SOURCE_DIR}/config/config.hpp
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
RENAME config.hpp)
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
# Package the whole thing up nicely
+2 -8
View File
@@ -112,6 +112,7 @@ The MFEM source code has the following structure:
│ ├── caliper
│ ├── ginkgo
│ ├── hiop
│ ├── ipopt
│ ├── jupyter
│ ├── moonolith
│ ├── petsc
@@ -121,7 +122,6 @@ The MFEM source code has the following structure:
├── fem
│ ├── ceed
│ ├── fe
│ ├── integ
│ ├── lor
│ ├── moonolith
│ ├── qinterp
@@ -135,10 +135,8 @@ The MFEM source code has the following structure:
│ ├── adjoint
│ ├── autodiff
│ ├── common
│ ├── dpg
│ ├── electromagnetics
│ ├── gslib
│ ├── hdiv-linear-solver
│ ├── hooke
│ ├── meshing
│ ├── mtop
@@ -149,7 +147,6 @@ The MFEM source code has the following structure:
│ ├── performance
│ ├── shifted
│ ├── solvers
│ ├── spde
│ ├── tools
│ └── toys
└── tests
@@ -213,7 +210,7 @@ device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
#### Utilities, building and documentation
@@ -346,9 +343,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- Code specifics
- All new public, protected, and private classes, methods, data members, and
functions have Doxygen-style documentation in source comments.
- Math formulas can be included in the Doxygen comments either with standard
LaTeX (`$..$` and `$$..$$`) for portions that need detailed explanation, or with
[Unicode](https://www.unicodeit.net/) or plain text when short or readable description is preferable.
- In addition to arguments and functionality, documentation should include the
current limitations of the code, any background information that is
implicitly assumed in the implementation, and the ownership and lifetime
+17 -13
View File
@@ -471,6 +471,9 @@ MFEM_USE_HIOP = YES/NO
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
HPC solver for nonlinear optimization problems.
MFEM_USE_IPOPT = YES/NO
Enable the usage of Ipopt in MFEM.
MFEM_USE_CODIPACK = YES/NO
Enable automatic differentiation using the CoDiPack library.
www.scicomp.uni-kl.de/codi/
@@ -628,13 +631,9 @@ The specific libraries and their options are:
both MPI and hypre.
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
for CUDA.
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
for HIP.
URL: http://computing.llnl.gov/projects/sundials/sundials-software
URL: http://computation.llnl.gov/projects/sundials/sundials-software
Options: SUNDIALS_OPT, SUNDIALS_LIB.
Versions: SUNDIALS >= 5.0.0,
SUNDIALS >= 5.4.0 for CUDA support, and
SUNDIALS >= 5.7.0 for HIP support.
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
@@ -659,7 +658,8 @@ The specific libraries and their options are:
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
and PT-Scotch are optional dependencies.
The support for STRUMPACK was added in MFEM v3.3.2.
The support for STRUMPACK was added in MFEM v3.3.2 and it requires STRUMPACK
2.0.0 or later.
URL: http://portal.nersc.gov/project/sparse/strumpack
Options: STRUMPACK_OPT, STRUMPACK_LIB.
Versions: STRUMPACK >= 3.0.0.
@@ -698,15 +698,12 @@ The specific libraries and their options are:
PETSc has been cloned on the same level as mfem and hypre:
./configure --download-fblaslapack=yes --download-scalapack=yes \
--download-mumps=yes --download-suitesparse=yes \
--with-hypre-dir=../hypre/src/hypre \
--with-hypre-dir=../hypre-2.10.0b/src/hypre \
--with-shared-libraries=0
When building PETSc with HIP, one may need to add a flag like -std=c2x to
CFLAGS to allow proper parsing of the hipsparse header under C.
URL: https://www.mcs.anl.gov/petsc
Options: PETSC_OPT, PETSC_LIB.
Versions: PETSc >= 3.8.0 (PETSc build without CUDA/HIP)
Versions: PETSc >= 3.8.0 (PETSc build without CUDA)
PETSc >= 3.15.0 (PETSc built with CUDA)
PETSc >= 3.19.0 (PETSc built with HIP, older versions may work too)
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
uses some of the PETSc options when compiled.
@@ -744,6 +741,11 @@ The specific libraries and their options are:
Options: HIOP_OPT, HIOP_LIB.
Versions: HIOP >= 0.4.6.
- Ipopt (optional), used when MFEM_USE_IPOPT = YES.
URL: https://github.com/coin-or/Ipopt
Options: IPOPT_OPT, IPOPT_LIB.
Versions: IPOPT >= 3.14
- CoDiPack (optional), used with MFEM_USE_CODIPACK = YES
URL: https://www.scicomp.uni-kl.de/codi/
Options: CODIPACK_OPT
@@ -796,7 +798,7 @@ The specific libraries and their options are:
URL: https://github.com/CEED/libCEED
https://ceed.exascaleproject.org/libceed
Options: CEED_DIR, CEED_OPT, CEED_LIB.
Versions: libCEED >= 0.12.
Versions: libCEED >= 0.10.
- RAJA (optional), used when MFEM_USE_RAJA = YES.
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
@@ -978,6 +980,7 @@ MFEM_USE_MPFR
MFEM_USE_ZLIB
MFEM_USE_PUMI
MFEM_USE_HIOP
MFEM_USE_IPOPT
MFEM_USE_CODIPACK
MFEM_USE_ADFORWARD
MFEM_USE_CUDA
@@ -1041,6 +1044,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
- POSIXCLOCKS
- PUMI
- HIOP
- IPOPT
- CoDiPack
- OCCA
- RAJA
+1 -1
View File
@@ -1,6 +1,6 @@
BSD 3-Clause License
Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
All rights reserved.
Redistribution and use in source and binary forms, with or without
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -36,6 +36,7 @@ set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
set(MFEM_USE_IPOPT @MFEM_USE_IPOPT@)
set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
@@ -55,8 +56,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
+62 -70
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -39,9 +39,6 @@
// Description of the git commit used to build MFEM.
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
#cmakedefine MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
#cmakedefine MFEM_USE_MPI
@@ -80,102 +77,100 @@
// Internal MFEM option: enable group/batch allocation for some small objects.
#cmakedefine MFEM_USE_MEMALLOC
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Enable MFEM functionality based on the SuiteSparse library.
#cmakedefine MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
#cmakedefine MFEM_USE_SUPERLU
#cmakedefine MFEM_USE_SUPERLU5
// Enable MFEM functionality based on the MUMPS library.
#cmakedefine MFEM_USE_MUMPS
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
// Enable MFEM functionality based on the STRUMPACK library.
#cmakedefine MFEM_USE_STRUMPACK
// Enable functionality based on the Ginkgo library.
// Enable functionality based on the Ginkgo library
#cmakedefine MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// Enable MFEM functionality based on the AmgX library
#cmakedefine MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable MFEM functionality based on the GnuTLS library
#cmakedefine MFEM_USE_GNUTLS
// Enable Sidre support.
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
#cmakedefine MFEM_USE_SIMD
// Enable FMS support.
#cmakedefine MFEM_USE_FMS
// Enable Conduit support.
#cmakedefine MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
#cmakedefine MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
#cmakedefine MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
#cmakedefine MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
#cmakedefine MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
#cmakedefine MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HIOP library.
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the GSLIB library
#cmakedefine MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
// Enable MFEM functionality based on the NetCDF library
#cmakedefine MFEM_USE_NETCDF
// Enable MFEM functionality based on the PETSc library
#cmakedefine MFEM_USE_PETSC
// Enable MFEM functionality based on the SLEPc library
#cmakedefine MFEM_USE_SLEPC
// Enable MFEM functionality based on the Sidre library
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes
#cmakedefine MFEM_USE_SIMD
// Enable MFEM functionality based on the FMS library
#cmakedefine MFEM_USE_FMS
// Enable MFEM functionality based on Conduit
#cmakedefine MFEM_USE_CONDUIT
// Enable MFEM functionality based on the PUMI library
#cmakedefine MFEM_USE_PUMI
// Enable MFEM functionality based on the Moonolith library
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HiOp library
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the Ipopt library
#cmakedefine MFEM_USE_IPOPT
// Build the GPU/CUDA-enabled version of the MFEM library.
// Requires a CUDA compiler (nvcc).
#cmakedefine MFEM_USE_CUDA
// Build the AMD GPU/HIP-enabled version of the MFEM library.
// Build the HIP-enabled version of the MFEM library.
// Requires a HIP compiler (hipcc).
#cmakedefine MFEM_USE_HIP
// Enable functionality based on the RAJA library.
// Enable MFEM functionality based on the RAJA library
#cmakedefine MFEM_USE_RAJA
// Enable functionality based on the OCCA library.
// Enable MFEM functionality based on the OCCA library
#cmakedefine MFEM_USE_OCCA
// Enable functionality based on the libCEED library.
// Enable MFEM functionality based on the libCEED library
#cmakedefine MFEM_USE_CEED
// Enable functionality based on the Caliper library.
#cmakedefine MFEM_USE_CALIPER
// Enable functionality based on the Algoim library.
#cmakedefine MFEM_USE_ALGOIM
// Enable functionality based on the Umpire library.
// Enable MFEM functionality based on the Umpire library
#cmakedefine MFEM_USE_UMPIRE
// Enable IO functionality based on the ADIOS2 library.
// Enable MFEM functionality based on the ADIOS2 library
#cmakedefine MFEM_USE_ADIOS2
// Enable MFEM functionality based on the Caliper library
#cmakedefine MFEM_USE_CALIPER
// Enable MFEM functionality based on the Algoim library
#cmakedefine MFEM_USE_ALGOIM
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Version of HYPRE used for building MFEM.
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
@@ -186,16 +181,13 @@
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
#cmakedefine MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
#cmakedefine MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
#cmakedefine MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
// Enable Enzyme for AD
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -11
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
# we only need HDF5 if Conduit was built with HDF5 support
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
"Additional packages required by Conduit.")
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
# MFEM's FindHDF5.cmake is not used.
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
endif()
include(MfemCmakeUtilities)
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
ADD_COMPONENT relay
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
ADD_COMPONENT blueprint
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -29
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,13 +14,9 @@
# - HYPRE_LIBRARIES
# - HYPRE_INCLUDE_DIRS
# - HYPRE_VERSION
# - HYPRE_USING_CUDA (internal)
# - HYPRE_USING_HIP (internal)
if (HYPRE_FOUND)
if (HYPRE_USING_CUDA)
find_package(CUDAToolkit REQUIRED)
endif()
if (HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
@@ -31,20 +27,6 @@ endif()
include(MfemCmakeUtilities)
mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
"Paths to headers required by HYPRE." "Libraries required by HYPRE."
CHECK_BUILD HYPRE_USING_CUDA FALSE
"
#undef HYPRE_USING_CUDA
#include <HYPRE_config.h>
#ifndef HYPRE_USING_CUDA
#error HYPRE is built without CUDA.
#endif
int main()
{
return 0;
}
"
CHECK_BUILD HYPRE_USING_HIP FALSE
"
#undef HYPRE_USING_HIP
@@ -75,16 +57,6 @@ if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
endif()
endif()
if (HYPRE_FOUND AND HYPRE_USING_CUDA)
find_package(CUDAToolkit REQUIRED)
get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
get_target_property(CURAND_LIBRARIES CUDA::curand LOCATION)
list(APPEND HYPRE_LIBRARIES ${CUSPARSE_LIBRARIES} ${CURAND_LIBRARIES})
set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
"HYPRE libraries + dependencies." FORCE)
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
endif()
if (HYPRE_FOUND AND HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
+23
View File
@@ -0,0 +1,23 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Sets the following variables:
# - IPOPT_FOUND
# - IPOPT_INCLUDE_DIRS
# - IPOPT_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(IPOPT IPOPT IPOPT_DIR
"include" "IpTNLP.hpp"
"lib" "ipopt"
"Paths to headers required by IPOPT."
"Libraries required by IPOPT.")
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,27 +0,0 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - MKL_PARDISO_FOUND
# - MKL_PARDISO_LIBRARIES
# - MKL_PARDISO_INCLUDE_DIRS
if(NOT MKL_LIBRARY_DIR)
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
set(MKL_LIBRARY_DIR "lib/intel64")
endif()
include(MfemCmakeUtilities)
mfem_find_package(MKL_PARDISO MKL_PARDISO
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -18
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -11,9 +11,8 @@
# Sets the following variables:
# - MUMPS_FOUND
# - MUMPS_LIBRARIES
# - MUMPS_INCLUDE_DIRS
# - MUMPS_VERSION
# - MUMPS_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(MUMPS MUMPS MUMPS_DIR
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
"Libraries required by MUMPS."
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
${CMAKE_CURRENT_BINARY_DIR}/config
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
else()
message(FATAL_ERROR "Unable to determine MUMPS version.")
endif()
endif()
+6 -17
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,17 +14,11 @@
# - NETCDF_LIBRARIES
# - NETCDF_INCLUDE_DIRS
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
include(MfemCmakeUtilities)
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# We need to guard against the case where HDF5 was already found but without
# the HL extensions (in which case mfem_find_package will treat the package
@@ -41,11 +35,6 @@ mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
# The netcdf library will always be the first element of NETCDF_LIBRARIES
# and we need to insert after that library but before the hdf5 library, so
# position 1 is used
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
if (HDF5_C_LIBRARY_hdf5_hl)
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
if (NOT NetCDF_FIND_QUIETLY)
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
endif()
endif()
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
# is already added to NETCDF_LIBRARIES)
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
ADD_COMPONENT NVector_Cuda
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
ADD_COMPONENT NVector_Hip
"include" nvector/nvector_hip.h "lib" sundials_nvechip
ADD_COMPONENT NVector_ParHyp
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
ADD_COMPONENT NVector_Parallel
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
ADD_COMPONENT NVector_MPIPlusX
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+56 -35
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -103,6 +103,25 @@ macro(add_mfem_examples EXE_SRCS)
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
target_link_libraries(${EXE_NAME} mfem)
if (MFEM_USE_MPI)
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
# Language-specific include directories:
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endforeach(SRC_FILE)
endmacro()
@@ -153,6 +172,26 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
if (EXTRA_DEFINES_LIST)
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
endif()
# Handle the MPI separately
if (MFEM_USE_MPI)
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endmacro()
@@ -397,9 +436,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
break()
endif()
endforeach()
if (Required AND NOT ${ReqPack}_FOUND)
if (${Required} AND NOT ${ReqPack}_FOUND)
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
endif()
endif()
endif()
@@ -465,18 +504,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
endif()
get_target_property(IsImported ${TargetName} IMPORTED)
if (IsImported)
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
if (NOT ImportConfig)
set(ImportConfig RELEASE)
list(FIND ImpConfigs ${ImportConfig} _Index)
if (_Index EQUAL -1)
list(GET ImpConfigs 0 ImportConfig)
endif()
endif()
set(ImportConfigSuffix "_${ImportConfig}")
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
list(FIND ImpConfigs ${ImportConfig} _Index)
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
set(ImportConfig "NO_CONFIG")
set(ImportConfigSuffix "")
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
@@ -494,8 +529,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
else()
# Set _Pack_LIBS from the target properties for ImportConfig
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
INTERFACE_LINK_LIBRARIES)
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
get_target_property(_value ${TargetName} ${_prop})
if (_value)
list(APPEND _Pack_LIBS ${_value})
@@ -746,7 +780,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
endforeach()
endif()
set(AddInterfaceLinkLibs TRUE)
if ("${type}" STREQUAL "STATIC_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
@@ -768,27 +801,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
# The INTERFACE_LINK_LIBRARIES property is handled below.
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
set(AddInterfaceLinkLibs FALSE)
endif()
if (AddInterfaceLinkLibs)
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
if (Libs)
foreach(Lib ${Libs})
if (NOT (TARGET ${Lib}))
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
endif()
list(APPEND LinkOpts "${Lib}")
else()
mfem_get_target_options(${Lib} COpts LOpts)
list(APPEND CompileOpts ${COpts})
@@ -796,6 +813,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
endif()
endforeach()
endif()
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
endif()
# Other potentially relevant properties:
@@ -819,9 +843,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
endfunction(mfem_get_target_options)
@@ -848,7 +869,7 @@ function(mfem_export_mk_files)
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_IPOPT MFEM_USE_GSLIB MFEM_USE_CUDA
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
@@ -873,7 +894,7 @@ function(mfem_export_mk_files)
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
endforeach()
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
+3 -22
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,30 +30,11 @@
#endif
// Windows specific options
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
#ifdef _WIN32
#ifndef _USE_MATH_DEFINES
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
#define _USE_MATH_DEFINES
#endif
// Macro MFEM_EXPORT: this macro is used when declaring exported global
// variables and static class variables in public header files, e.g.:
// extern MFEM_EXPORT Geometry Geometries;
// static MFEM_EXPORT Device device_singleton;
// In cases where a class contains multiple static variables, instead of marking
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
// e.g.:
// class MFEM_EXPORT MemoryManager ...
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
// variable that needs MFEM_EXPORT does not have it. However, builds with
// optional external libraries are not tested and may require separate checks to
// determine the necessity of MFEM_EXPORT.
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
#ifdef mfem_EXPORTS
#define MFEM_EXPORT __declspec(dllexport)
#else
#define MFEM_EXPORT __declspec(dllimport)
#endif
#else
#define MFEM_EXPORT
#endif
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
// the following macro allows us to get M_PI and some needed functions, e.g.
+20 -23
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,18 +30,15 @@
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
// The absolute path of the MFEM source prefix.
// The absolute path of the MFEM source prefix
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
// The absolute path of the MFEM installation prefix.
// The absolute path of the MFEM installation prefix
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
// Description of the git commit used to build MFEM.
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
// #define MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
// #define MFEM_USE_MPI
@@ -91,7 +88,7 @@
// Enable MFEM functionality based on the SuiteSparse library.
// #define MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
// Enable MFEM functionality based on the SuperLU library.
// #define MFEM_USE_SUPERLU
// #define MFEM_USE_SUPERLU5
@@ -102,40 +99,40 @@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
// Enable MFEM features based on the Ginkgo library.
// Enable MFEM features based on the Ginkgo library
// #define MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// #define MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable secure socket streams based on the GNUTLS library
// #define MFEM_USE_GNUTLS
// Enable Sidre support.
// Enable Sidre support
// #define MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
// Enable the use of SIMD in the high performance templated classes
// #define MFEM_USE_SIMD
// Enable FMS support.
// Enable FMS support
// #define MFEM_USE_FMS
// Enable Conduit support.
// Enable Conduit support
// #define MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
// Enable functionality based on the NetCDF library (reading CUBIT files)
// #define MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
// Enable functionality based on the PETSc library
// #define MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
// Enable functionality based on the SLEPc library
// #define MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
// #define MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
// Enable MFEM functionality based on the PUMI library
// #define MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
@@ -144,7 +141,10 @@
// Enable MFEM functionality based on the HIOP library.
// #define MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the IPOPT library.
// #define MFEM_USE_IPOPT
// Enable MFEM functionality based on the GSLIB library
// #define MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
@@ -186,13 +186,10 @@
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
// #define MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
// #define MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
// #define MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
+2 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -46,6 +46,7 @@ MFEM_USE_FMS = @MFEM_USE_FMS@
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
MFEM_USE_PUMI = @MFEM_USE_PUMI@
MFEM_USE_HIOP = @MFEM_USE_HIOP@
MFEM_USE_IPOPT = @MFEM_USE_IPOPT@
MFEM_USE_GSLIB = @MFEM_USE_GSLIB@
MFEM_USE_CUDA = @MFEM_USE_CUDA@
MFEM_USE_HIP = @MFEM_USE_HIP@
@@ -57,7 +58,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
+18 -15
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
endif()
# MFEM options. Set to mimic the default "defaults.mk" file.
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
@@ -49,6 +48,7 @@ option(MFEM_USE_FMS "Enable FMS usage" OFF)
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
option(MFEM_USE_PUMI "Enable PUMI" OFF)
option(MFEM_USE_HIOP "Enable HiOp" OFF)
option(MFEM_USE_IPOPT "Enable Ipopt" OFF)
option(MFEM_USE_CUDA "Enable CUDA" OFF)
option(MFEM_USE_HIP "Enable HIP" OFF)
option(MFEM_USE_OCCA "Enable OCCA" OFF)
@@ -60,7 +60,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
@@ -106,7 +105,12 @@ set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
# If hypre was compiled to depend on BLAS and LAPACK:
# set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
# "Packages that HYPRE depends on.")
# CUDA and HIP dependencies for HYPRE are handled in FindHYPRE.cmake.
if (MFEM_USE_CUDA)
# This is only necessary when hypre is built with cuda:
set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
"Libraries that HYPRE depends on.")
endif()
# HIP dependency for HYPRE is handled in FindHYPRE.cmake.
set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
@@ -130,18 +134,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
"Additional packages required by ParMETIS.")
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
"Path to the SuperLU_DIST library.")
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
"LAPACK" "BLAS" CACHE STRING
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
"Additional packages required by SuperLU_DIST.")
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
"Path to the MUMPS library.")
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
# Packages required by MUMPS, depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
"Additional packages required by MUMPS.")
# If the MPI package does not find all required Fortran libraries:
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -152,8 +154,7 @@ set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
# STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
# Starting with v2.2.0 of STRUMPACK, ParMETIS and Scotch are optional.
set(STRUMPACK_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"Scotch/ptscotch/ptscotcherr/scotch/scotcherr"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
"ScaLAPACK" "Scotch/ptscotch/ptscotcherr/scotch/scotcherr" CACHE STRING
"Additional packages required by STRUMPACK.")
# If the MPI package does not find all required Fortran libraries:
# set(STRUMPACK_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -220,13 +221,15 @@ set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
"Directory where HiOp is installed")
set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that HiOp depends on.")
set(IPOPT_DIR "${MFEM_DIR}/../ipopt/install" CACHE STRING
"Directory where IpOpt is installed")
set(IPOPT_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that IpOpt depends on.")
set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
+17 -37
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
# gfx900, gfx1010, etc.
HIP_ARCH = gfx900
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
HIP_XCOMPILER =
HIP_XLINKER = -Wl,
@@ -148,6 +148,7 @@ MFEM_USE_FMS = NO
MFEM_USE_CONDUIT = NO
MFEM_USE_PUMI = NO
MFEM_USE_HIOP = NO
MFEM_USE_IPOPT = NO
MFEM_USE_GSLIB = NO
MFEM_USE_CUDA = NO
MFEM_USE_HIP = NO
@@ -160,7 +161,6 @@ MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_MKL_PARDISO = NO
MFEM_USE_MOONOLITH = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
@@ -267,9 +267,6 @@ endif
ifeq ($(MFEM_USE_CUDA),YES)
SUNDIALS_LIB += -lsundials_nveccuda
endif
ifeq ($(MFEM_USE_HIP),YES)
SUNDIALS_LIB += -lsundials_nvechip
endif
# If SUNDIALS was built with KLU:
# MFEM_USE_SUITESPARSE = YES
@@ -288,10 +285,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
-lsuperlu_dist_5.1.0
else
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
-lsuperlu_dist $(LAPACK_LIB)
-lsuperlu_dist -lblas
endif
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
@@ -315,7 +312,7 @@ MPI_FORTRAN_LIB = -lmpifort
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
MUMPS_OPT = -I$(MUMPS_DIR)/include
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
@@ -331,30 +328,16 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
$(SCOTCH_LIB) $(SCALAPACK_LIB)
# Ginkgo library configuration
# Ginkgo library configuration (currently not needed)
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
GINKGO_BUILD_TYPE=Release
ifeq ($(MFEM_USE_GINKGO),YES)
BASE_FLAGS = -std=c++14
endif
GINKGO_OPT = -isystem $(GINKGO_DIR)/include
GINKGO_LIB_DIR = $(sort $(dir $(wildcard\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
GINKGO_LINK_LIB_DIR = $(GINKGO_DIR)$(subst $(GINKGO_SEARCH_DIR),,$(GINKGO_LIB_DIR))
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.a\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.so\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dylib\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dll)))
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
GINKGO_LIB_DIR = $(sort $(dir $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*d.a $(GINKGO_DIR)/lib*/libginkgo*d.so $(GINKGO_DIR)/lib*/libginkgo*d.dylib $(GINKGO_DIR)/lib*/libginkgo*d.dll)))
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
ifeq ($(GINKGO_BUILD_TYPE),Debug)
@@ -363,8 +346,7 @@ ifeq ($(GINKGO_BUILD_TYPE),Debug)
endif
else
endif
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
$(GINKGO_LINK)
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LIB_DIR) -L$(GINKGO_LIB_DIR) $(GINKGO_LINK)
# AmgX library configuration
AMGX_DIR = @MFEM_DIR@/../amgx
@@ -466,6 +448,11 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
HIOP_OPT = -I$(HIOP_DIR)/include
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
# IPOPT
IPOPT_DIR = @MFEM_DIR@/../ipopt/install
IPOPT_OPT = -I$(IPOPT_DIR)/include
IPOPT_LIB = -L$(IPOPT_DIR)/lib -lipopt $(LAPACK_LIB)
# CoDiPack
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
CODIPACK_OPT = -I$(CODIPACK_DIR)
@@ -503,6 +490,7 @@ ifdef GOTCHA_DIR
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
endif
# BLITZ library configuration
BLITZ_DIR = @MFEM_DIR@/../blitz
BLITZ_OPT = -I$(BLITZ_DIR)/include
@@ -557,14 +545,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# MKL Pardiso library configuration
MKL_PARDISO_DIR ?=
MKL_LIBRARY_SUBDIR ?= lib
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# PARELAG library configuration
PARELAG_DIR = @MFEM_DIR@/../parelag
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
+2
View File
@@ -19,7 +19,9 @@ RUN apt-get update && \
apt-get install -y libcurl4-openssl-dev libssl-dev
ENV PATH=$PATH:/opt/mfem-view/bin
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
ENV DEBIAN_FRONTEND=noninteractive
# The user will see the view on shell into the container
WORKDIR /opt/mfem-view
ENTRYPOINT ["/bin/bash"]
+6 -6
View File
@@ -34,14 +34,14 @@ RUN cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack develop --path /code mfem@master+examples+miniapps && \
spack add mfem@master+examples+miniapps && \
spack install
spack add mfem@master+examples+miniapps # && \
# spack install
# ensure mfem always on various paths
RUN cd /opt/mfem-env && \
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
#RUN cd /opt/mfem-env && \
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Present the software install when we shell in
# The view is at /opt/mfem-env/.spack-env/view
WORKDIR /opt/software
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
#WORKDIR /opt/software
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
+46 -108
View File
@@ -7,31 +7,21 @@ You can use this image for a demo of using mfem! 🎉️
Updated containers are built and deployed on merges to the main branch and releases.
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
## Usage
### Usage
We provide two containers, which you can either build or use directly from
[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
- `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
- `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
In the above, "ghcr.io" means "GitHub Container Registry" and
Here is how to build the container. Note that we build so it belongs to the same
namespace as the repository here. "ghcr.io" means "GitHub Container Registry" and
is the [GitHub packages](https://github.com/features/packages) registry that supports
Docker images and other OCI artifacts.
### Ubuntu
> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
so you don't need to build it. However, if you want to, you can do the following:
Docker images and other OCI artifacts. From the root of the repository:
```bash
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
below. Once you have built (or prefer to pull) you can shell into the container as follows:
### Shell Ubuntu
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu
@@ -47,13 +37,39 @@ bin etc include lib libexec sbin share var
- Examples are in share/mfem/examples
- Examples are in share/mfem/miniapps
Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
You can read more about interaction with these examples and miniapps below.
### Shell Ubuntu Base
To shell into the container:
```bash
$ ls include/ | grep mfem
mfem
mfem-performance.hpp
mfem.hpp
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Off the bat, you can see mfem libraries are in your path so you can jump into development:
```bash
env | grep mfem
```
```bash
PKG_CONFIG_PATH=/opt/mfem-env/.spack-env/view/lib/pkgconfig:/opt/mfem-env/.spack-env/view/share/pkgconfig:/opt/mfem-env/.spack-env/view/lib64/pkgconfig
PWD=/opt/mfem-env
MANPATH=/opt/mfem-env/.spack-env/view/share/man:/opt/mfem-env/.spack-env/view/man:
CMAKE_PREFIX_PATH=/opt/mfem-env/.spack-env/view
SPACK_ENV=/opt/mfem-env
ACLOCAL_PATH=/opt/mfem-env/.spack-env/view/share/aclocal
LD_LIBRARY_PATH=/opt/mfem-env/.spack-env/view/lib:/opt/mfem-env/.spack-env/view/lib64
PATH=/opt/mfem-env/.spack-env/view/bin:/opt/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
```
#### Examples and MiniApps
If you want to develop a tool that _uses_ mfem, you can find the built libraries in:
```
$ ls /opt/mfem-env/.spack-env/view/
bin etc include lib libexec sbin share var
```
And yes, this is the working directory when you shell into the container!
@@ -63,16 +79,6 @@ You can find the examples here:
```bash
cd share/mfem/examples
```
Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
we need:
```bash
export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
```
And then run:
```bash
$ ./ex0
Options used:
@@ -91,6 +97,7 @@ Number of unknowns: 101
Average reduction factor = 0.140201
```
Try running a few, and look at the associated .cpp file for the source code!
You can also explore the "mini apps," also in share/mfem, but under miniapps.
```bash
@@ -123,87 +130,18 @@ Rule:
Applying rule...done.
```
Have fun! As a reminder, this container is ideal for developing your own
applications that might use mfem, or having a nice environment to test out
examples.
Have fun!
### Ubuntu Base
> Use this build for a development environment with spack and mfem
This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
however you can build it locally too:
#### Your own App
If you want to develop with your own code base
(and mfem as is in the container) you can bind to somewhere else in the container (e.g., src)
```bash
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Change directory to the mfem environment, setup spack, and activate the environment:
```bash
source /opt/spack/share/spack/setup-env.sh
cd /opt/mfem-env/
spack env activate .
```
Note that this environment is installing to the view at `/opt/view`. Since the environment
knows to install mfem from `/code` this means that you could make changes in the container (or bind
`/code` to your container) and then update spack:
```bash
# Note that concretization takes a hot minute!
$ spack install
```
And if you want to load mfem:
```bash
$ spack load mfem
$ env | grep mfem
```
In this development container, you can find the examples and miniapps alongside
mfem under `/code`:
```bash
cd /code/examples
```
```bash
$ ./ex0
```
```console
Options used:
--mesh ../data/star.mesh
--order 1
Number of unknowns: 101
Iteration : 0 (B r, r) = 0.184259
Iteration : 1 (B r, r) = 0.102754
Iteration : 2 (B r, r) = 0.00558141
Iteration : 3 (B r, r) = 1.5247e-05
Iteration : 4 (B r, r) = 1.13807e-07
Iteration : 5 (B r, r) = 6.27231e-09
Iteration : 6 (B r, r) = 3.76268e-11
Iteration : 7 (B r, r) = 6.07423e-13
Iteration : 8 (B r, r) = 4.10615e-15
Average reduction factor = 0.140201
```
This container is likely ideal for someone that wants to develop mfem itself.
For other use cases, we recommend using the slimmer image. As an example,
if you want to develop with your own code base (and mfem as is in the container)
you can bind to somewhere else in the container (e.g., src)
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
```
In the above, we can pretend your project is in the present working directory (PWD) and we are
binding to source. You can then use the mfem in the container for development, and if you
want to distribute your library or app in a container, you can use the mfem container as the base.
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+3 -20
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -21,7 +21,6 @@ if [[ "${option}" == "--help" ]]; then
echo " --copyright"
echo " --license"
echo " --release"
echo " --math"
echo " --style"
echo " --history"
echo ""
@@ -36,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
# copyright check
copyright=true
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^4]\|[^2].\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2024:"
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2022:"
cat matches.txt
copyright=false
fi
@@ -64,18 +63,6 @@ if [[ "${option}" == "--release" || "${option}" == "" ]]; then
fi
fi
# math in doxygen check
math=true
if [[ "${option}" == "--math" || "${option}" == "" ]]; then
if grep '\\f' -R doc/CodeDocumentation.dox mfem.hpp config general linalg mesh fem examples miniapps | grep -v '\\frac' | grep -v fem/picojson.h | grep -v config/githooks/pre-push > matches.txt
then
echo "Please use $..$ and \$\$..\$\$ for LaTeX formulas in the following"
echo "comments instead of the Doxygen style \f$..\f$, \f[..\f], etc."
cat matches.txt
math=false
fi
fi
# wrap-up
code=0
if ! $copyright ; then
@@ -90,10 +77,6 @@ if ! $release ; then
echo "release check failed, unroll log for details"
code=1
fi
if ! $math ; then
echo "math in doxygen check failed, unroll log for details"
code=1
fi
# `code-style` is not just a check, it will actually reformat the code if
# necessary. This means that if one pushes while the repo is in dirty state
+3 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -38,14 +38,14 @@ all: header config-mk
MPI = $(MFEM_USE_MPI:NO=)
GHV_CXX ?= $(MFEM_CXX)
GHV = get_hypre_version
GHV_FLAGS = $(MFEM_CXXFLAGS) $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
MUMPS = $(MFEM_USE_MUMPS:NO=)
GMV_CXX ?= $(MFEM_CXX)
GMV = get_mumps_version
GMV_FLAGS = $(MFEM_CXXFLAGS) $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
GMV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
$(GHV): $(SRC)$(GHV).cpp
$(call mfem-info, Determining HYPRE version ...)
@@ -110,4 +110,3 @@ config-mk:
clean:
rm -f $(CONFIG_HPP) $(CONFIG_MK) sample-runs-build.log
rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out
+12 -4
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,6 +58,10 @@ groups_serial=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp"'
'"ipopt"
"IpOpt examples:"
"examples/ipopt"
"ex10.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -138,7 +142,7 @@ groups_parallel=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
"pmesh-optimizer.cpp pminimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
@@ -215,6 +219,10 @@ groups_all=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp ex9p.cpp"'
'"ipopt"
"IpOpt examples:"
"examples/ipopt"
"ex10.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -227,7 +235,7 @@ groups_all=(
"Meshing miniapps:"
"miniapps/meshing"
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
@@ -315,7 +323,7 @@ function extract_sample_runs()
sruns=`grep -v "^//.* mpirun .* ${app}" "${src}" |
grep "^//.* ${app}" |
sed -e "s/.* ${app}/${vg_app}/g"`
runs="${sruns}"$'\n'"${pruns}"
runs="${sruns}${pruns}"
if [ "$skip_gen_meshes" == "yes" ]; then
runs=`printf "%s" "$runs" | grep -v ".* -m .*\.gen"`
fi
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
-95
View File
@@ -1,95 +0,0 @@
MFEM NURBS mesh v1.1
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
2
elements
2
1 3 0 1 4 5
2 3 1 2 3 4
boundary
6
3 1 0 1
3 1 4 5
3 1 1 2
3 1 3 4
1 1 5 0
2 1 2 3
edges
7
0 0 1
0 5 4
1 1 2
1 4 3
2 0 5
2 1 4
2 2 3
vertices
6
knotvectors
3
1 5 0 0 1 2 3 4 4
1 5 0 0 1 2 3 4 4
1 2 0 0 1 1
spacing
3
0 5 3 1 4 0 0 10.0
1 4 3 2 4 0 1 0.15 0.15
2 2 3 1 1 0 1 0.4
weights
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
FiniteElementSpace
FiniteElementCollection: NURBS1
VDim: 2
Ordering: 1
0 0
4 0
8 0
8 1
4 1
0 1
1 0
2 0
3 0
3 1
2 1
1 1
5 0
6 0
7 0
7 1
6 1
5 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
-37
View File
@@ -1,37 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
1
elements
4
1 1 0 1
1 1 1 2
1 1 2 3
1 1 3 4
boundary
2
1 0 0
2 0 4
vertices
5
2
0 0
0.25 0.25
0.50 0.50
0.75 0.75
1 1

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