Print the parts of the dof_truedof matrix

Change default command line argument values
Use different manufactured solution
2026-01-12 18:50:34 -08:00 · 2025-09-08 18:13:21 -07:00 · 2025-09-04 20:29:30 -07:00 · 2025-06-15 19:42:36 -07:00 · 2024-07-28 18:41:55 -07:00 · 2024-05-27 21:22:11 -07:00
1039 changed files with 5648 additions and 20490 deletions
@@ -43,7 +43,7 @@ jobs:
          remove-docker-images: 'true'

      - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3

      # It's easier to reference named variables than indexes of the matrix
      - name: Set Environment
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -104,7 +104,7 @@ jobs:
      # This external action allows to interrupt a workflow already running on
      # the same branch to save resources.
      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
+        uses: styfle/cancel-workflow-action@0.11.0
        with:
          access_token: ${{ github.token }}

@@ -120,7 +120,7 @@ jobs:
      # /home/runner/work/mfem/mfem/mfem
      # Note: Done now to access "install-hypre" and "install-metis" actions.
      - name: checkout mfem
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
        with:
          path: ${{ env.MFEM_TOP_DIR }}
          # Fetch the complete history for codecov to access commits ID
@@ -166,7 +166,7 @@ jobs:
      - name: cache hypre
        id: hypre-cache
        if: matrix.mpi == 'par'
-        uses: actions/cache@v4
+        uses: actions/cache@v3
        with:
          path: ${{ env.HYPRE_TOP_DIR }}
          key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
@@ -194,7 +194,7 @@ jobs:
      - name: cache metis
        id: metis-cache
        if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
-        uses: actions/cache@v4
+        uses: actions/cache@v3
        with:
          path: ${{ env.METIS_TOP_DIR }}
          key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
@@ -209,7 +209,7 @@ jobs:
      - name: cache vcpkg (Windows)
        id: vcpkg-cache
        if: matrix.os == 'windows-latest'
-        uses: actions/cache@v4
+        uses: actions/cache@v3
        with:
          path: vcpkg_cache
          key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
@@ -36,7 +36,7 @@ jobs:

    steps:
      - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3

      # Initializes the CodeQL tools for scanning.
      - name: Initialize CodeQL
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -35,12 +35,12 @@ jobs:

    steps:
      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
+        uses: styfle/cancel-workflow-action@0.11.0
        with:
          access_token: ${{ github.token }}

      - name: checkout MFEM
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
        with:
          path: mfem

@@ -50,7 +50,7 @@ jobs:

      - name: Cache Hypre Install
        id: hypre-cache
-        uses: actions/cache@v4
+        uses: actions/cache@v3
        with:
          path: ${{ env.HYPRE_TOP_DIR }}
          key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
@@ -65,7 +65,7 @@ jobs:

      - name: Cache Metis Install
        id: metis-cache
-        uses: actions/cache@v4
+        uses: actions/cache@v3
        with:
          path: ${{ env.METIS_TOP_DIR }}
          key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -28,12 +28,12 @@ jobs:

    steps:
      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
+        uses: styfle/cancel-workflow-action@0.11.0
        with:
          access_token: ${{ github.token }}

      - name: MFEM Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
        with:
          path: mfem

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -34,12 +34,12 @@ jobs:
       github.event.pull_request.head.repo.full_name != github.repository)
    steps:
      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
+        uses: styfle/cancel-workflow-action@0.11.0
        with:
          access_token: ${{ github.token }}

      - name: checkout mfem
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3

      - name: copyright check
        id: copyright
@@ -60,18 +60,11 @@ jobs:
          ./config/githooks/pre-push --release
        continue-on-error: true

-      - name: math check
-        id: math
-        run: |
-          ./config/githooks/pre-push --math
-        continue-on-error: true
-
      - name: wrap-up
        if: |
          steps.copyright.outcome != 'success' ||
          steps.license.outcome != 'success' ||
-          steps.release.outcome != 'success' ||
-          steps.math.outcome != 'success'
+          steps.release.outcome != 'success'
        run: |
          if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
            echo "copyright check failed, unroll log for details"
@@ -82,9 +75,6 @@ jobs:
          if [[ "${{ steps.release.outcome }}" != "success" ]]; then
            echo "release check failed, unroll log for details"
          fi
-          if [[ "${{ steps.math.outcome }}" != "success" ]]; then
-            echo "math check failed, unroll log for details"
-          fi
          exit 1

  code-style:
@@ -94,7 +84,7 @@ jobs:
       github.event.pull_request.head.repo.full_name != github.repository)
    steps:
      - name: checkout mfem
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3

      - name: get astyle
        run: |
@@ -111,7 +101,7 @@ jobs:
       github.event.pull_request.head.repo.full_name != github.repository)
    steps:
      - name: checkout mfem
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3

      - name: get doxygen and graphviz
        run: |
@@ -136,7 +126,7 @@ jobs:
    runs-on: ubuntu-latest
    steps:
      - name: checkout mfem
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
        with:
          fetch-depth: 0

@@ -283,10 +283,6 @@ miniapps/nurbs/mode_*
 miniapps/nurbs/Example1*
 miniapps/nurbs/sin-fit.mesh
 miniapps/nurbs/CurveInt
-miniapps/nurbs/nurbs_naca_cmesh
-miniapps/nurbs/naca-cmesh.mesh
-miniapps/nurbs/glvis_naca-cmesh.mesh
-miniapps/nurbs/Naca_cmesh

 miniapps/performance/ex1
 miniapps/performance/ex1p
@@ -342,7 +338,6 @@ miniapps/toys/mondrian.mesh
 miniapps/solvers/block-solvers
 miniapps/solvers/lor_solvers
 miniapps/solvers/plor_solvers
-miniapps/solvers/lor_elast
 miniapps/solvers/ParaView
 miniapps/solvers/mesh.*
 miniapps/solvers/sol.*
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -23,7 +23,7 @@ allocate_resource:
  stage: allocate_resource
  script:
    - echo ${ALLOC_NAME}
-    - salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --partition=pdebug --time=45 --no-shell --job-name=${ALLOC_NAME}
  timeout: 6h

 # GitLab jobs for the Quartz machine at LLNL
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -11,47 +11,19 @@
 Version 4.6.1 (development)
 ===========================

-Meshing improvements
--------------------
- Introduced formulas for refinement of patches in NURBS meshes. Refinement by
-  arbitrary integer factors is also enabled, e.g. in the mesh-explorer miniapp.
-  NURBS coarsening and knot removal are also introduced.
-
 Discretization improvements
 ---------------------------
 - Introduced support for higher order non conformal Nedelec elements on
  simplices in ParMesh.
- Introduced support for internal boundary elements in nonconformal adapted
-  meshes.

 - Added functionality for construction of cut-surface and cut-volume
  IntegrationRules through a moment-fitting approach. The cut is specified by
  the zero level set of a Coefficient. See fem/intrules_cut.hpp and Example 38.

-GPU support
----------------------------
- Added support for full assembly on simplices.
- Added functionality for BilinearFormIntegrators to use kernels that work for both
-  tensor and unstructured elements.
- Added partial assembly for linear elasticity. Does not use sum factorization for now.
-
-New and updated examples and miniapps
-------------------------------------
- Added a new block solver in miniapp/solvers for the Darcy problem.
-  The new solver is based on a Bramble-Pasciak preconditioning. User can
-  use and implement their own preconditioner for the mass matrix.
-
- Added miniapp to demonstrate new elasticity integrator and unstructured element GPU support,
-  and a block diagonal preconditioner using low order refinement. Allows comparison with
-  currently existing legacy mode integrator. See miniapps/solvers/lor_elast.
-
 Miscellaneous
 -------------
 - The ReadCubit Genesis mesh importer has been rewritten to improve readability.

- Updated the Doxygen documentation style, which now requires Doxygen version
-  1.9.8 or later. See the doc/ directory.
-
 - Improved thread safety for global variables in the library, for example
  IntegrationRules IntRules, RefinedIntRules, GeometryRefiner
  GlobGeometryRefiner, and FiniteElement::dof2quad_array.
@@ -131,6 +103,7 @@ New and updated examples and miniapps
  saddle-point solver methodology, suitable for high-order discretizations and
  for GPU acceleration. Examples illustrating the solution of Darcy and grad-div
  problems are included. See miniapps/hdiv-linear-solver.
+>>>>>>> master

 - Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
  and parallel examples for diffusion, convection-diffusion, acoustics and
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -18,10 +18,9 @@ set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
  "Path to optional user configuration file.")

 # Require C++11 and disable compiler-specific extensions
-set(CMAKE_CXX_STANDARD 11 CACHE STRING "C++ standard to use.")
-set(CMAKE_CXX_STANDARD_REQUIRED ON CACHE BOOL
-  "Force the use of the chosen C++ standard.")
-set(CMAKE_CXX_EXTENSIONS OFF CACHE BOOL "Enable C++ standard extensions.")
+set(CMAKE_CXX_STANDARD 11)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+set(CMAKE_CXX_EXTENSIONS OFF)

 # Load user settings before the defaults - this way the defaults will not
 # overwrite the user set options. If the user has not set all options, we still
@@ -94,7 +93,7 @@ if ((MFEM_USE_SUNDIALS OR
     MFEM_USE_RAJA OR
     MFEM_USE_UMPIRE) AND
    ("${CMAKE_CXX_STANDARD}" LESS "14"))
-  set(CMAKE_CXX_STANDARD 14 CACHE STRING "C++ standard to use." FORCE)
+  set(CMAKE_CXX_STANDARD 14)
 endif()

 # Include xSDK default CMake file.
@@ -105,8 +104,7 @@ enable_language(CXX)
 if (MINGW)
   # MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
   # 25/25p) unless we use '-std=gnu++11':
-   set(CMAKE_CXX_EXTENSIONS ON
-      CACHE BOOL "Enable C++ standard extensions." FORCE)
+   set(CMAKE_CXX_EXTENSIONS ON)
 endif()
 if (MFEM_USE_CUDA)
   if (MFEM_USE_HIP)
@@ -117,11 +115,9 @@ if (MFEM_USE_CUDA)
      set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
   endif()
   enable_language(CUDA)
-   set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
-      "CUDA standard to use.")
-   set(CMAKE_CUDA_STANDARD_REQUIRED ON CACHE BOOL
-      "Force the use of the chosen CUDA standard.")
-   set(CMAKE_CUDA_EXTENSIONS OFF CACHE BOOL "Enable CUDA standard extensions.")
+   set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
+   set(CMAKE_CUDA_STANDARD_REQUIRED ON)
+   set(CMAKE_CUDA_EXTENSIONS OFF)
   set(CUDA_FLAGS "--expt-extended-lambda")
   if (CMAKE_VERSION VERSION_LESS 3.18.0)
      set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
@@ -346,9 +346,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
 - Code specifics
  - All new public, protected, and private classes, methods, data members, and
    functions have Doxygen-style documentation in source comments.
-  - Math formulas can be included in the Doxygen comments either with standard
-    LaTeX (`$..$` and `$$..$$`) for portions that need detailed explanation, or with
-    [Unicode](https://www.unicodeit.net/) or plain text when short or readable description is preferable.
  - In addition to arguments and functionality, documentation should include the
    current limitations of the code, any background information that is
    implicitly assumed in the implementation, and the ownership and lifetime
@@ -796,7 +796,7 @@ The specific libraries and their options are:
  URL: https://github.com/CEED/libCEED
       https://ceed.exascaleproject.org/libceed
  Options: CEED_DIR, CEED_OPT, CEED_LIB.
-  Versions: libCEED >= 0.12.
+  Versions: libCEED >= 0.10.

 - RAJA (optional), used when MFEM_USE_RAJA = YES.
  Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
@@ -1,6 +1,6 @@
 BSD 3-Clause License

-Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC
+Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
 All rights reserved.

 Redistribution and use in source and binary forms, with or without
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -21,7 +21,6 @@ if [[ "${option}" == "--help" ]]; then
  echo "  --copyright"
  echo "  --license"
  echo "  --release"
-  echo "  --math"
  echo "  --style"
  echo "  --history"
  echo ""
@@ -36,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
 # copyright check
 copyright=true
 if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
-  if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^4]\|[^2].\)" > matches.txt; then
-    echo "Please update the following files to Copyright (c) 2010-2024:"
+  if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^3]\|[^2].\)" > matches.txt; then
+    echo "Please update the following files to Copyright (c) 2010-2023:"
    cat matches.txt
    copyright=false
  fi
@@ -64,18 +63,6 @@ if [[ "${option}" == "--release" || "${option}" == "" ]]; then
  fi
 fi

-# math in doxygen check
-math=true
-if [[ "${option}" == "--math" || "${option}" == "" ]]; then
-  if grep '\\f' -R doc/CodeDocumentation.dox mfem.hpp config general linalg mesh fem examples miniapps | grep -v '\\frac' | grep -v fem/picojson.h | grep -v config/githooks/pre-push > matches.txt
-  then
-    echo "Please use $..$ and \$\$..\$\$ for LaTeX formulas in the following"
-    echo "comments instead of the Doxygen style \f$..\f$, \f[..\f], etc."
-    cat matches.txt
-    math=false
-  fi
-fi
-
 # wrap-up
 code=0
 if ! $copyright ; then
@@ -90,10 +77,6 @@ if ! $release ; then
  echo "release check failed, unroll log for details"
  code=1
 fi
-if ! $math ; then
-  echo "math in doxygen check failed, unroll log for details"
-  code=1
-fi

 # `code-style` is not just a check, it will actually reformat the code if
 # necessary. This means that if one pushes while the repo is in dirty state
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,6 +1,6 @@
 #!/bin/bash

-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -1,7 +1,7 @@
 MFEM NURBS mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # SEGMENT     = 1
 # SQUARE      = 3
@@ -1,7 +1,7 @@
 MFEM NURBS mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # SEGMENT     = 1
 # SQUARE      = 3
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,95 +0,0 @@
-MFEM NURBS mesh v1.1
-
-#
-# MFEM Geometry Types (see mesh/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-2
-
-elements
-2
-1 3 0 1 4 5
-2 3 1 2 3 4
-
-boundary
-6
-3 1 0 1
-3 1 4 5
-3 1 1 2
-3 1 3 4
-1 1 5 0
-2 1 2 3
-
-edges
-7
-0 0 1
-0 5 4
-1 1 2
-1 4 3
-2 0 5
-2 1 4
-2 2 3
-
-vertices
-6
-
-knotvectors
-3
-1 5 0 0 1 2 3 4 4
-1 5 0 0 1 2 3 4 4
-1 2 0 0 1 1
-
-spacing
-3
-0 5 3 1 4 0 0 10.0
-1 4 3 2 4 0 1 0.15 0.15
-2 2 3 1 1 0 1 0.4
-
-weights
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-
-FiniteElementSpace
-FiniteElementCollection: NURBS1
-VDim: 2
-Ordering: 1
-
-0 0
-4 0
-8 0
-8 1
-4 1
-0 1
-1 0
-2 0
-3 0
-3 1
-2 1
-1 1
-5 0
-6 0
-7 0
-7 1
-6 1
-5 1
@@ -1,7 +1,7 @@
 MFEM NURBS mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # SEGMENT     = 1
 # SQUARE      = 3
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM NURBS mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # SEGMENT     = 1
 # SQUARE      = 3
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM NURBS mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # SEGMENT     = 1
 # SQUARE      = 3
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
@@ -1,7 +1,7 @@
 MFEM mesh v1.0

 #
-# MFEM Geometry Types (see fem/geom.hpp):
+# MFEM Geometry Types (see mesh/geom.hpp):
 #
 # POINT       = 0
 # SEGMENT     = 1
--- a/Show More
+++ b/Show More
Author	SHA1	Message	Date
Barry Fadness	ec3e3e2db0	Print the parts of the dof_truedof matrix	2026-01-12 18:50:34 -08:00
Barry Fadness	eae8e49444	Change default command line argument values	2025-09-08 18:13:21 -07:00
Barry Fadness	037dc77bc6	Use different manufactured solution	2025-09-04 20:29:30 -07:00
Barry Fadness	bece01008c	Add stopwatch to time block-hybridization solver	2025-06-15 19:42:36 -07:00
Barry Fadness	f3490c0cab	Use automatic variable for prerequisites	2024-07-28 18:41:55 -07:00
Barry Fadness	df04a9235d	Change manufactured solution	2024-05-27 21:22:11 -07:00
Barry Fadness	33372c6154	Merge branch 'master' into block-hybridization-dev	2023-12-14 18:31:14 -08:00
Barry Fadness	7da4561e09	Remove redundant print statements	2023-10-30 12:31:27 -07:00
Barry Fadness	320b1f4022	Improve formatting consistency	2023-10-27 17:58:39 -07:00
Barry Fadness	c317677de2	Delete unncecessary pointer assignment	2023-10-27 17:33:33 -07:00
Barry Fadness	f983922aba	Fix mistake move GetElementVDofs out of else-statement	2023-10-27 17:32:36 -07:00
Barry Fadness	095ea3ab0f	Merge branch 'master' into block-hybridization-dev	2023-10-27 17:25:11 -07:00
Barry Fadness	62b3b06d33	Make pH owner of its factors	2023-10-25 00:02:50 -07:00
Barry Fadness	3080cba39d	Fix mistake move AddSubMatrix	2023-10-24 18:18:21 -07:00
Barry Fadness	1a77427557	Add MixedBilinearForm::ComputeElementMatrices() This new class member function is based on BilinearForm::ComputeElementMatrices(). It was also necessary to make changes to both MixedBilinearForm::Assemble() and MixedBilinearForm::ComputeElementMatrix().	2023-10-24 13:09:48 -07:00
Chak Shing Lee	a2941b0589	fix random initial values in ess_data_.Block(1)	2023-10-23 13:25:07 -07:00
Chak Shing Lee	d362363b6f	Merge branch 'block-hybridization-dev' of https://github.com/mfem/mfem into block-hybridization-dev	2023-10-23 11:09:30 -07:00
Chak Shing Lee	ebec0673ac	fix the way we eliminate Hcurl essential dofs	2023-10-23 11:09:12 -07:00
Barry Fadness	55f497f3db	Replace PtAP with two-step RAP	2023-10-16 13:45:10 -07:00
Barry Fadness	4f2d638993	Fix text output typo	2023-09-29 21:31:25 -07:00
Barry Fadness	6faef3873b	Extract block hybridization code	2023-09-20 17:29:59 -07:00
Gabriel Esteban Pinochet Soto	4b7fdcd10a	Update BCs in BramblerPasciakSolver - Create new constructor that ussses the Essential BC for defining the linear system and the preconditioner. - Make style	2023-09-14 15:25:39 -07:00
Gabriel Esteban Pinochet Soto	1c303ee013	Merge branch 'block-solvers/bramble-pasciak-dev' of github.com:mfem/mfem into block-hybridization-dev	2023-09-13 14:33:28 -07:00
Chak Shing Lee	bca1919f39	fix typo in documentation	2023-09-06 14:57:35 -07:00
Chak Shing Lee	ac495b7490	Merge branch 'block-solvers/bramble-pasciak-dev' of https://github.com/mfem/mfem into block-hybridization-dev	2023-09-06 14:55:47 -07:00
Chak Shing Lee	ed98b4bf4a	precompute element matrices of Mform_ in DarcyProblem	2023-09-06 14:42:20 -07:00
Chak Shing Lee	8f11035617	Merge branch 'block-solvers/bramble-pasciak-dev' of https://github.com/mfem/mfem into block-hybridization-dev	2023-09-06 14:21:10 -07:00
Chak Shing Lee	ece621c512	resolve conflicts from merging with block-solvers/bramble-pasciak-dev	2023-09-06 14:16:50 -07:00
Chak Shing Lee	1253fe5b16	Merge branch 'block-hybridization-dev' of https://github.com/mfem/mfem into block-hybridization-dev	2023-09-06 11:54:29 -07:00
Chak Shing Lee	bb681b5172	Merge branch 'master' of https://github.com/mfem/mfem into block-hybridization-dev	2023-09-01 16:43:25 -07:00
Barry Fadness	e83a2b4dfa	Split Mult into member functions	2023-07-18 19:03:59 -07:00
Barry Fadness	aa6ee1e659	Split constructor into member functions	2023-07-17 23:13:02 -07:00
Barry Fadness	637de53e10	Change default boundary conditions	2023-02-12 18:34:48 -08:00
Barry Fadness	f347adafd7	Store and use mixed_dofs array	2023-02-12 18:13:35 -08:00
Barry Fadness	5cb5bdfa47	Make small style changes	2023-02-12 00:58:36 -08:00
Barry Fadness	b6b515a5cc	Remove unnecessary zero initializations	2023-02-12 00:57:10 -08:00
Barry Fadness	89c9ac4a3e	Move test_size init before use	2023-02-11 20:46:39 -08:00
Barry Fadness	2b238b3ccc	Reuse Minv_sub_vec vector	2023-02-11 20:42:58 -08:00
Barry Fadness	115cf9cc35	Move vector initialization outside of loops	2023-02-11 20:41:55 -08:00
Barry Fadness	030f6b0adf	Utilize offsets arrays	2023-02-11 20:37:40 -08:00
Barry Fadness	6ab54fae6a	Remove unnecessary test_dofs array	2023-02-11 20:32:44 -08:00
Barry Fadness	98f8c25102	Use existing function to restrict u hat	2023-02-11 19:51:22 -08:00
Barry Fadness	cb3649b0e7	Reuse rhs_r vector	2023-02-11 19:45:23 -08:00
Barry Fadness	8affea4ff7	Delete num_hat_dofs variable	2023-02-11 19:27:06 -08:00
Barry Fadness	52ce79500b	Make Ct_local code more consistent	2023-02-11 19:07:42 -08:00
Barry Fadness	f7b685a949	Initialize dense matrices outside of loop	2023-02-11 19:04:50 -08:00
Barry Fadness	561f9495c8	Correct the order of the contraint space If the FE space is RT_p, then GetOrder() returns p + 1. See fe_coll.hpp L360.	2023-02-03 20:32:37 -08:00
Barry Fadness	640502cd19	Use Last Array class member function	2023-02-03 19:16:08 -08:00
Barry Fadness	1e1524ef0a	Store the number of elements in const int	2023-02-03 19:07:52 -08:00
Barry Fadness	60f6b4138f	Use test_offsets array	2023-01-30 21:23:16 -08:00
Barry Fadness	8799a5a6c1	Move offsets code closer to Init	2023-01-30 20:37:12 -08:00
Barry Fadness	b6a7aa9e7e	Make lines more similar to hybridization.cpp	2023-01-29 21:24:46 -08:00
Barry Fadness	873fd364bd	Edit whitespace	2023-01-29 20:54:26 -08:00
Barry Fadness	8bdf7a5bde	Increase the value of epsilon	2023-01-29 20:52:55 -08:00
Barry Fadness	7586d62bee	Move creation of dofs array	2023-01-29 20:51:59 -08:00
Barry Fadness	ebafb82533	Remove get calls from for loops	2023-01-29 20:49:56 -08:00
Barry Fadness	de77303ca3	Move elimination step so that dofs are correct The element matrix elimination previously used the hat_dof_marker array. Now we need adjusted dofs instead, which are obtained from the signed dofs.	2023-01-29 17:29:18 -08:00
Barry Fadness	ffafd46e06	Remove the unnecessary hat_dof_marker array	2023-01-28 16:51:22 -08:00
Barry Fadness	5ffb1421b3	Move ess_dof_marker creation	2023-01-28 16:48:03 -08:00
Barry Fadness	bf0ebd3b4a	Remove skip_zeros variable and use default value	2023-01-28 16:44:58 -08:00
Barry Fadness	4483127d46	Remove num_hat_dofs variable in constructor	2023-01-28 16:44:10 -08:00
Barry Fadness	1c02f91d61	Fix bug in serial refinement number Each number in the fraction was an integer. If neither the numerator nor the denominator is a float, then only the quotient is returned. As a result the logarithm will be less than it should be, and the ceiling will not round up.	2022-12-23 21:14:21 -08:00
Barry Fadness	bc8d146070	Add description of block hybridization solver	2022-12-20 13:39:14 -08:00
Barry Fadness	d48a9fb683	Add brackets to free array memory in destructor	2022-12-20 13:38:34 -08:00
Barry Fadness	15666ae446	Fix small typo and edit preamble notes	2022-12-05 11:52:16 -08:00
Barry Fadness	c234398430	Prevent the mass coefficient from being destroyed An integrator does not own its coefficient. If a coefficient is created in a scoped region using stack memory, then it will expire even though a bilinear form may rely on it. Make the mass coefficient a unique pointer owned by the Darcy problem class. Then the coefficient will persist until a Darcy problem instance reaches the end of the main function.	2022-11-21 00:26:28 -08:00
Barry Fadness	842b8e81a5	Enable the hypre preconditioner again No error message is encountered for hypre versions < 22100.	2022-11-21 00:12:56 -08:00
Barry Fadness	95131ae6df	Fix dof true dof problems We need to go back and forth between dofs and true dofs. The offsets_ array should be true dofs, so some code could be deleted. All array sizes may be okay now.	2022-10-20 17:06:42 -07:00
Barry Fadness	7b7fd1d7d1	Fix essential bc elimination in right-hand side	2022-10-17 01:51:11 -07:00
Barry Fadness	51bf50bd1f	Edit comment and remove forgotten line	2022-10-17 01:49:17 -07:00
Barry Fadness	ba77f139b2	Simplify setting the right-hand side pressure block	2022-10-17 01:46:08 -07:00
Barry Fadness	c0db35f4be	Unset preconditioner for now because of seg faults	2022-09-29 13:04:54 -07:00
Barry Fadness	fad4206ccb	Clean up formatting to be consistent	2022-09-29 12:53:29 -07:00
Barry Fadness	8844cbbd87	Substitute offsets to avoid computing sizes multiple times	2022-09-29 12:31:01 -07:00
Barry Fadness	5da2f32570	Add essential bc elimination - incorrect	2022-09-29 12:23:47 -07:00
Barry Fadness	1d6b812c22	Change order of variable initialization to address warning	2022-09-26 00:34:04 -07:00
Barry Fadness	0c10422f95	Remove polynomial order from parameter list because unnecessary	2022-09-26 00:29:18 -07:00
Barry Fadness	836bc54397	Fix typo in anisotropic boundary file path	2022-09-26 00:06:56 -07:00
Barry Fadness	0fe70454b5	Change array name to know it is a list	2022-09-26 00:00:56 -07:00
Barry Fadness	3d420605fe	Allocate the preconditioner on the heap	2022-09-22 00:51:06 -07:00
Barry Fadness	f182173df4	Change tolerance value eps and delete print statement	2022-09-21 23:18:03 -07:00
Barry Fadness	feba2c4bfe	Set preconditioner and then operator (as recommended)	2022-09-21 23:15:18 -07:00
Barry Fadness	25f972fcdb	Convert between true dofs and local dofs	2022-09-21 23:09:50 -07:00
Barry Fadness	dd1d6f4e26	Fix obtaining the hat dofs for solution recovery	2022-09-21 23:07:57 -07:00
Barry Fadness	cd11ddf27a	Remove second memory allocation of private members	2022-09-21 22:59:21 -07:00
Barry Fadness	96f79c97b0	Make parallel mesh alias instead of a copy	2022-09-21 22:53:47 -07:00
Barry Fadness	d6574909ee	Make the constraint FE space a class member The constraint space owns its action-only prolongation operator. This operator is used in the Mult() function, so we must prevent the space from being destroyed after the constructor is called.	2022-09-21 22:04:54 -07:00
Barry Fadness	bed8da810d	Remove vector mass coefficient temporarily The vector mass piecewise constant coefficient created in the DarcyProblem class constructor is destroyed. It is needed in the hybridization solver to compute the element matrices. We will deal with this later.	2022-09-21 21:31:11 -07:00
Barry Fadness	4096ed429d	Make changes to match block-solvers and just to compile	2022-09-19 13:47:13 -07:00
Barry Fadness	513dd5914d	Add block hybridization solver class	2022-09-19 13:45:20 -07:00
Barry Fadness	c72c5f6570	Add block hybridization solver	2022-09-19 13:44:26 -07:00
Barry Fadness	b2146af63a	Add getter for parallel test FE space	2022-09-19 13:44:03 -07:00
Barry Fadness	e5f597a556	Cut and paste right-hand side code The code to reduce the right-hand side was intertwined with the construction of the left-hand side. Move the lines of code from the constructor to the Mult function.	2022-09-18 18:07:11 -07:00
Barry Fadness	1dd16d99f2	Copy and paste block hybridization code	2022-09-18 13:37:31 -07:00
chakshinglee	5f92c58dfe	make style	2022-09-12 22:14:29 -07:00
chakshinglee	ce8f6bb37d	shorter name for the block-diagonally-preconditioned MINRES solver	2022-09-12 21:57:11 -07:00
chakshinglee	26c86d7b8c	add the elimination step as an option for DarcySolver	2022-09-12 21:09:50 -07:00
chakshinglee	1fdc4b7dae	store both the right hand sides before and after elimination in DarcyProblem; add getter for the bilinear forms for hybridization solver	2022-09-12 18:02:03 -07:00
chakshinglee	3dfa563818	resolve conflicts with master	2022-09-12 16:16:03 -07:00
Lee	de57fe137e	Adding an access function to the serial constraint matrix (transpose) Ct in the Hybridization class. This will be useful in hybridizing block systems.	2017-06-12 09:50:58 -07:00
Lee	45167598a0	First commit. Adding functions to compute element matrices (only for domain integrators) for MixedBilinearForm. These are needed for forming local block systems.	2017-06-12 09:46:45 -07:00