starting ST with artificial absorption

.appveyor.yml

@@ -1,13 +1,10 @@
 version: '{build}'
 
 # https://www.appveyor.com/docs/build-environment/#build-worker-images
-image: Visual Studio 2019
+image: Visual Studio 2017
 
 install:
 
-# Start from outside clone directory
-- cd ..
-
 # Install MS-MPI
 - ps: Start-FileDownload 'https://download.microsoft.com/download/B/2/E/B2EB83FE-98C2-4156-834A-E1711E6884FB/MSMpiSetup.exe'
 - MSMpiSetup.exe -unattend
@@ -18,51 +15,37 @@ install:
 - msmpisdk.msi /passive
 - set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
 
-# Set MSMPI environment variables needed for CMake detection
-- set MSMPI_LIB32=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86
-- set MSMPI_LIB64=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64
-- set MSMPI_INC=C:\Program Files (x86)\Microsoft SDKs\MPI\Include
-
-# Install METIS, use MFEM's mirror because the original source server is often
-# down and we don't support yet the new repo https://github.com/KarypisLab/METIS
+# Install METIS, use a mirror because the original source server is not always
+# up. Original url:
+#    http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
 - ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
 - 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
 - cd metis-5.1.0
 - ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
 - cmake -H. -Bbuild
 # -DCMAKE_BUILD_TYPE=Release
-- cmake --build build --target metis -j 4
-- set METIS_PATH=%cd%
+- cmake --build build
 - cd ..
 
 # Install hypre
 - ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
 - 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
 - cd hypre-2.19.0/src
-- cmake -H. -Bbuild
-- cmake --build build -j 4
+- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
+- cmake --build build
 - cmake --build build --target install
 - cd ../..
 
-# Return to clone directory
-- cd %APPVEYOR_BUILD_FOLDER%
-
 # MFEM
 before_build:
-- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
-# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
-- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
+- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
+- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
 
 build_script:
-- cmake --build build_parallel --config Debug -j 4
-# - cmake --build build_serial --config Release -j 4
-# - cmake --build build_serial --target exec --config Release -j 4
-- cmake --build build_shared_serial --config Release -j 4
-- cmake --build build_shared_serial --target exec --config Release -j 4
+- cmake --build build_parallel --config Release -j 4
+- cmake --build build_serial --config Release -j 4
+- cmake --build build_serial --target exec --config Release -j 4
 
 after_build:
-# - cd build_serial
-# - ctest -C Release --output-on-failure
-# - cd ..
-- cd build_shared_serial
+- cd build_serial
 - ctest -C Release --output-on-failure

.binder/environment.yml

@@ -5,7 +5,7 @@ channels:
 dependencies:
 - xeus-cling=0.13.0
 - xwidgets=0.26.0
-# NOTE: it is possible that these are not needed for the lab frontend
+# NOTE: it's possible these aren't needed for the lab frontend
 - widgetsnbextension=3.5.1
 - pip
 - pip:

.github/workflows/README.md

@@ -1,48 +0,0 @@
-                    Finite Element Discretization Library
-                                   __
-                       _ __ ___   / _|  ___  _ __ ___
-                      | '_ ` _ \ | |_  / _ \| '_ ` _ \
-                      | | | | | ||  _||  __/| | | | | |
-                      |_| |_| |_||_|   \___||_| |_| |_|
-
-                               https://mfem.org
-
-
-This directory contains the GitHub CI scripts for MFEM.
-
-Note that some of these scripts use the shared MFEM GitHub Actions from the external mfem/github-actions repository:
-
-  https://github.com/mfem/github-actions
-
-For a particular action, e.g. `mfem/github-actions/build-mfem@v2.1`, the `v2.1` suffix denotes the branch in the above from which the action is taken.
-
-The current CI workflows are:
-
-### `repo-check.yml`
-
-Runs a number of static repository-level sanity checks.
-
-- `file-headers-check` checks copyright date, license, etc. using the `--copyright`, `--license` and `--release` options of the `config/githooks/pre-push` script.
-
-- `code-style` checks the code style using the `--style` option of the `config/githooks/pre-push` script.
-
-- `documentation` checks the documentation build using the `tests/scripts/documentation` script.
-
-- `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
-
-### `mfem-analysis.yml` (`build-analysis`)
-
-Checks if the code builds and satisfies minimal requirements.
-
-- `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
-
-### `builds-and-tests.yml`
-
-Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
-
-Uses the following GitHub Actions from https://github.com/mfem/github-actions:
-
-- `mfem/github-actions/build-hypre`
-- `mfem/github-actions/build-metis`
-- `mfem/github-actions/build-mfem`
-- `mfem/github-actions/upload-coverage`

.github/workflows/build-container.yml

@@ -1,85 +0,0 @@
-name: "Docker"
-
-on:
-  # Always have a base image ready to go - this is a nightly build
-  schedule:
-    - cron: 0 3 * * *
-
-  # Allow manual trigger of a build
-  workflow_dispatch:
-
-  # On push to main we build and deploy images
-  push:
-    branches:
-      - master
-
-  # Publish packages on release
-  release:
-    types: [published]
-
-jobs:
-  build:
-    if: github.repository == 'mfem/mfem' # Don't run in forks
-    permissions:
-      packages: write
-    strategy:
-      fail-fast: false
-      matrix:
-        # Dockerfiles to build, a matrix supports future expanded builds
-        container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
-                    ["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
-
-    runs-on: ubuntu-latest
-    name: Build
-    steps:
-      - name: Run Actions Cleaner
-        uses: easimon/maximize-build-space@v8
-        with:
-          overprovision-lvm: 'true'
-          remove-dotnet: 'true'
-          remove-android: 'true'
-          remove-haskell: 'true'
-          remove-codeql: 'true'
-          remove-docker-images: 'true'
-
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      # It's easier to reference named variables than indexes of the matrix
-      - name: Set Environment
-        env:
-          dockerfile: ${{ matrix.container[0] }}
-          uri: ${{ matrix.container[1] }}
-        run: |
-          echo "dockerfile=$dockerfile" >> $GITHUB_ENV
-          echo "uri=$uri" >> $GITHUB_ENV
-
-      - name: Pull previous layers for cache
-        run: docker pull ${uri}:latest || echo "No container to pull"
-
-      - name: Build Container
-        run: |
-           container=$uri:latest
-           docker build -f ${dockerfile} -t ${container} .
-           echo "container=$container" >> $GITHUB_ENV
-
-      - name: GHCR Login
-        if: (github.event_name != 'pull_request')
-        uses: docker/login-action@v2
-        with:
-          registry: ghcr.io
-          username: ${{ github.actor }}
-          password: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Deploy
-        if: (github.event_name != 'pull_request')
-        run: |
-            docker push ${container}
-
-      - name: Tag and Push Release
-        if: (github.event_name == 'release')
-        run: |
-            tag=${GITHUB_REF#refs/tags/}
-            echo "Tagging and releasing ${uri}:${tag}"
-            docker tag ${uri}:latest ${uri}:${tag}
-            docker push ${uri}:${tag}

.github/workflows/builds-and-tests.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -10,7 +10,7 @@
 # CONTRIBUTING.md for details.
 
 # In this CI section, we build different variants of mfem and run test on them.
-name: "Tests"
+name: builds-and-tests
 
 # Github actions can use the default "GITHUB_TOKEN". By default, this token
 # is set to have permissive access. However, this is not a good practice
@@ -27,7 +27,6 @@ on:
       - master
       - next
   pull_request:
-  workflow_dispatch:
 
 env:
   HYPRE_ARCHIVE: v2.19.0.tar.gz
@@ -47,50 +46,31 @@ jobs:
   builds-and-tests:
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
+        os: [ubuntu-18.04, macos-10.15]
         target: [dbg, opt]
         mpi: [seq, par]
-        build-system: [make, cmake]
+        build-system: [make]
         hypre-target: [int32]
-        exclude:
-          - os: ubuntu-latest
-            build-system: cmake
-          - os: macos-latest
-            build-system: cmake
-          - os: windows-latest
-            build-system: make
         # 'include' allows us to:
         # - Add a variable to all jobs without creating a new matrix dimension.
         #   Codecov is defined that way.
         # - Add a new combination.
         #   'build-system: cmake' and 'hypre-target: int64'
         #
-        # Note: we will gather coverage info for any non-debug run except the
+        # note: we will gather coverage info for any non-debug run except the
         # CMake build.
         include:
           - target: dbg
             codecov: NO
           - target: opt
             codecov: YES
-          - os: ubuntu-latest
-            target: dbg
-            config-opts: 'CPPFLAGS+=-Og'
-          - os: windows-latest
-            codecov: NO
-          - os: windows-latest
-            target: opt
-            mpi: par
-            config-opts: '-DBUILD_SHARED_LIBS=ON'
-          - os: ubuntu-latest
+          - os: ubuntu-18.04
             target: opt
             codecov: NO
             mpi: par
             build-system: cmake
             hypre-target: int32
-            # This option can be set to pass additional configuration options to
-            # the MFEM configuration command.
-            # config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
-          - os: ubuntu-latest
+          - os: ubuntu-18.04
             target: opt
             codecov: NO
             mpi: par
@@ -101,189 +81,128 @@ jobs:
     runs-on: ${{ matrix.os }}
 
     steps:
-      # This external action allows to interrupt a workflow already running on
-      # the same branch to save resources.
-      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
-        with:
-          access_token: ${{ github.token }}
+    # This external action allows to interrupt a workflow already running on
+    # the same branch to save resource
+    - name: Cancel Previous Runs
+      uses: styfle/cancel-workflow-action@0.9.0
+      with:
+        access_token: ${{ github.token }}
 
-      # Fix 'No space left on device' errors for Ubuntu builds.
-      - name: Run Actions Cleaner
-        if: matrix.os == 'ubuntu-latest'
-        uses: easimon/maximize-build-space@v8
-        with:
-          overprovision-lvm: 'true'
-          remove-android: 'true'
+    # Checkout MFEM in "mfem" subdirectory. Final path:
+    # /home/runner/work/mfem/mfem/mfem
+    # Note: Done now to access "install-hypre" and "install-metis" actions.
+    - name: checkout mfem
+      uses: actions/checkout@v2
+      with:
+        path: ${{ env.MFEM_TOP_DIR }}
+        # Fetch the complete history for codecov to access commits ID
+        fetch-depth: 0
 
-      # Checkout MFEM in "mfem" subdirectory. Final path:
-      # /home/runner/work/mfem/mfem/mfem
-      # Note: Done now to access "install-hypre" and "install-metis" actions.
-      - name: checkout mfem
-        uses: actions/checkout@v4
-        with:
-          path: ${{ env.MFEM_TOP_DIR }}
-          # Fetch the complete history for codecov to access commits ID
-          fetch-depth: 0
+    # Only get MPI if defined for the job.
+    # TODO: It would be nice to have only one step, e.g. with a dedicated
+    # action, but I (@adrienbernede) don't see how at the moment.
+    - name: get MPI (Linux)
+      if: matrix.mpi == 'par' && matrix.os == 'ubuntu-18.04'
+      run: |
+        sudo apt-get install mpich libmpich-dev
+        export MAKE_CXX_FLAG="MPICXX=mpic++"
 
-      # Only get MPI if defined for the job.
-      # TODO: It would be nice to have only one step, e.g. with a dedicated
-      # action, but I (@adrienbernede) don't see how at the moment.
-      - name: get MPI (Linux)
-        if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
-        run: |
-          sudo apt-get install mpich libmpich-dev
+    - name: get lcov (Linux)
+      if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-18.04'
+      run: |
+        sudo apt-get install lcov
 
-      - name: get lcov (Linux)
-        if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
-        run: |
-          sudo apt-get install lcov
+    - name: Set up Homebrew
+      if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
+      uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
 
-      # Keep the following section in case we need it again in the future,
-      # see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
-      # - name: Set up Homebrew
-      #   if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
-      #   uses: Homebrew/actions/setup-homebrew@master
+    - name: get MPI (MacOS)
+      if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
+      run: |
+        export HOMEBREW_NO_INSTALL_CLEANUP=1
+        brew install openmpi
+        export MAKE_CXX_FLAG="MPICXX=mpic++"
 
-      - name: get MPI (MacOS)
-        if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
-        run: |
-          export HOMEBREW_NO_INSTALL_CLEANUP=1
-          brew install openmpi
+    - name: get MPI (MacOS)
+      if: matrix.codecov == 'YES' && matrix.os == 'macos-10.15'
+      run: |
+        export HOMEBREW_NO_INSTALL_CLEANUP=1
+        brew install lcov
 
-      - name: get lcov (MacOS)
-        if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
-        run: |
-          export HOMEBREW_NO_INSTALL_CLEANUP=1
-          brew install lcov
+    # Get Hypre through cache, or build it.
+    # Install will only run on cache miss.
+    - name: cache hypre
+      id: hypre-cache
+      if: matrix.mpi == 'par'
+      uses: actions/cache@v2
+      with:
+        path: ${{ env.HYPRE_TOP_DIR }}
+        key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.0
 
-      - name: get MPI (Windows)
-        if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
-        uses: mpi4py/setup-mpi@v1.1.4
+    - name: get hypre
+      if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true'
+      uses: mfem/github-actions/build-hypre@v2.0
+      with:
+        archive: ${{ env.HYPRE_ARCHIVE }}
+        dir: ${{ env.HYPRE_TOP_DIR }}
+        target: ${{ matrix.hypre-target }}
 
-      # Get Hypre through cache, or build it.
-      # Install will only run on cache miss.
-      - name: cache hypre
-        id: hypre-cache
-        if: matrix.mpi == 'par'
-        uses: actions/cache@v4
-        with:
-          path: ${{ env.HYPRE_TOP_DIR }}
-          key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
+    # Get Metis through cache, or build it.
+    # Install will only run on cache miss.
+    - name: cache metis
+      id: metis-cache
+      if: matrix.mpi == 'par'
+      uses: actions/cache@v2
+      with:
+        path: ${{ env.METIS_TOP_DIR }}
+        key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
 
-      - name: get hypre
-        if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
-        uses: mfem/github-actions/build-hypre@v2.4
-        with:
-          archive: ${{ env.HYPRE_ARCHIVE }}
-          dir: ${{ env.HYPRE_TOP_DIR }}
-          target: ${{ matrix.hypre-target }}
-          build-system: make
+    - name: install metis
+      if: matrix.mpi == 'par' && steps.metis-cache.outputs.cache-hit != 'true'
+      uses: mfem/github-actions/build-metis@v2.0
+      with:
+        archive: ${{ env.METIS_ARCHIVE }}
+        dir: ${{ env.METIS_TOP_DIR }}
 
-      - name: get hypre (Windows)
-        if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
-        uses: mfem/github-actions/build-hypre@v2.4
-        with:
-          archive: ${{ env.HYPRE_ARCHIVE }}
-          dir: ${{ env.HYPRE_TOP_DIR }}
-          target: ${{ matrix.hypre-target }}
-          build-system: cmake
+    # MFEM build and test
+    - name: build
+      uses: mfem/github-actions/build-mfem@v2.0
+      with:
+        os: ${{ matrix.os }}
+        target: ${{ matrix.target }}
+        codecov: ${{ matrix.codecov }}
+        mpi: ${{ matrix.mpi }}
+        build-system: ${{ matrix.build-system }}
+        hypre-dir: ${{ env.HYPRE_TOP_DIR }}
+        metis-dir: ${{ env.METIS_TOP_DIR }}
+        mfem-dir: ${{ env.MFEM_TOP_DIR }}
 
-      # Get Metis through cache, or build it.
-      # Install will only run on cache miss.
-      - name: cache metis
-        id: metis-cache
-        if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
-        uses: actions/cache@v4
-        with:
-          path: ${{ env.METIS_TOP_DIR }}
-          key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
+    # Run checks (and only checks) on debug targets
+    - name: checks
+      if: matrix.build-system == 'make' && matrix.target == 'dbg'
+      run: |
+        cd ${{ env.MFEM_TOP_DIR }}  && make check
 
-      - name: install metis
-        if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
-        uses: mfem/github-actions/build-metis@v2.4
-        with:
-          archive: ${{ env.METIS_ARCHIVE }}
-          dir: ${{ env.METIS_TOP_DIR }}
+    - name: unit tests
+      if: matrix.build-system == 'make' && matrix.target == 'opt'
+      run: |
+        cd ${{ env.MFEM_TOP_DIR }} && make unittest
 
-      - name: cache vcpkg (Windows)
-        id: vcpkg-cache
-        if: matrix.os == 'windows-latest'
-        uses: actions/cache@v4
-        with:
-          path: vcpkg_cache
-          key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
+    - name: tests
+      if: matrix.build-system == 'make' && matrix.target == 'opt'
+      run: |
+        cd ${{ env.MFEM_TOP_DIR }} && make test
 
-      - name: prepare vcpkg binary cache location (Windows)
-        if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
-        run: |
-          mkdir -p vcpkg_cache
+    - name: cmake unit tests
+      if: matrix.build-system == 'cmake'
+      run: |
+        cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure
 
-      - name: install metis (Windows)
-        if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
-        env:
-          VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
-        run: |
-          vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
-
-      # MFEM build and test
-      - name: build
-        uses: mfem/github-actions/build-mfem@v2.4
-        env:
-          VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
-        with:
-          os: ${{ matrix.os }}
-          target: ${{ matrix.target }}
-          codecov: ${{ matrix.codecov }}
-          mpi: ${{ matrix.mpi }}
-          build-system: ${{ matrix.build-system }}
-          hypre-dir: ${{ env.HYPRE_TOP_DIR }}
-          metis-dir: ${{ env.METIS_TOP_DIR }}
-          mfem-dir: ${{ env.MFEM_TOP_DIR }}
-          config-options: ${{ matrix.config-opts }}
-          library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
-
-      # Run checks (and only checks) on debug targets
-      - name: checks
-        if: matrix.build-system == 'make' && matrix.target == 'dbg'
-        run: |
-          cd ${{ env.MFEM_TOP_DIR }}  && make check
-
-      # Note: 'tests' include the unit tests
-      - name: tests
-        if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
-        run: |
-          cd ${{ env.MFEM_TOP_DIR }} && make test
-
-      - name: cmake checks
-        if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
-        run: |
-          CTEST_CONFIG="Debug"
-          cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
-        shell: bash
-
-      - name: cmake unit tests (Ubuntu)
-        if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
-        run: |
-          CTEST_CONFIG="Release"
-          [[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
-          cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
-        shell: bash
-
-      - name: cmake tests
-        if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
-        run: |
-          CTEST_CONFIG="Release"
-          cd ${{ env.MFEM_TOP_DIR }}/build && \
-          ctest --output-on-failure -C ${CTEST_CONFIG} || \
-          ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
-        shell: bash
-
-      # Code coverage (process and upload reports)
-      - name: codecov
-        if: matrix.codecov == 'YES'
-        uses: mfem/github-actions/upload-coverage@v2.4
-        with:
-          name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
-          project_dir: ${{ env.MFEM_TOP_DIR }}
-          directories: "fem general linalg mesh"
+    # Code coverage (process and upload reports)
+    - name: codecov
+      if: matrix.codecov == 'YES'
+      uses: mfem/github-actions/upload-coverage@v2.0
+      with:
+        name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
+        project_dir: ${{ env.MFEM_TOP_DIR }}
+        directories: "fem general linalg mesh"

.github/workflows/codeql-analysis.yml

@@ -1,69 +0,0 @@
-# For most projects, this workflow file will not need changing; you simply need
-# to commit it to your repository.
-#
-# You may wish to alter this file to override the set of languages analyzed,
-# or to provide custom queries or build logic.
-#
-# ******** NOTE ********
-# We have attempted to detect the languages in your repository. Please check
-# the `language` matrix defined below to confirm you have the correct set of
-# supported CodeQL languages.
-#
-name: "Static Analysis"
-
-on:
-  push:
-    branches: ["master", "next"]
-  pull_request:
-    # The branches below must be a subset of the branches above
-    branches: ["master"]
-
-jobs:
-  analyze:
-    name: Analyze
-    runs-on: ubuntu-latest
-    permissions:
-      actions: read
-      contents: read
-      security-events: write
-
-    strategy:
-      fail-fast: false
-      matrix:
-        language: [ 'cpp' ]
-        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
-        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-
-      # Initializes the CodeQL tools for scanning.
-      - name: Initialize CodeQL
-        uses: github/codeql-action/init@v2
-        with:
-          languages: ${{ matrix.language }}
-          # If you wish to specify custom queries, you can do so here or in a config file.
-          # By default, queries listed here will override any specified in a config file.
-          # Prefix the list here with "+" to use these queries and those in the config file.
-
-          # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
-          # queries: security-extended,security-and-quality
-
-      # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
-      # If this step fails, then you should remove it and run the build manually (see below)
-      - name: Autobuild
-        uses: github/codeql-action/autobuild@v2
-
-      # ℹ️ Command-line programs to run using the OS shell.
-      # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
-
-      #   If the Autobuild fails above, remove it and uncomment the following three lines.
-      #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
-
-      # - run: |
-      #   echo "Run, Build Application using script"
-      #   ./location_of_script_within_repo/buildscript.sh
-
-      - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@v2

.github/workflows/mfem-analysis.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -9,7 +9,7 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-name: "Build Analysis"
+name: build-analysis
 
 permissions:
   actions: write
@@ -20,7 +20,6 @@ on:
       - master
       - next
   pull_request:
-  workflow_dispatch:
 
 env:
   HYPRE_ARCHIVE: v2.19.0.tar.gz
@@ -31,70 +30,71 @@ env:
 
 jobs:
   gitignore:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-18.04
 
     steps:
-      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
-        with:
-          access_token: ${{ github.token }}
+    - name: Cancel Previous Runs
+      uses: styfle/cancel-workflow-action@0.9.0
+      with:
+        access_token: ${{ github.token }}
 
-      - name: checkout MFEM
-        uses: actions/checkout@v4
-        with:
-          path: mfem
+    - name: checkout MFEM
+      uses: actions/checkout@v2
+      with:
+        path: mfem
 
-      - name: Get MPI (Linux)
-        run: |
-          sudo apt-get install mpich libmpich-dev
+    - name: Get MPI (Linux)
+      run: |
+        sudo apt-get install mpich libmpich-dev
+        export MAKE_CXX_FLAG="MPICXX=mpic++"
 
-      - name: Cache Hypre Install
-        id: hypre-cache
-        uses: actions/cache@v4
-        with:
-          path: ${{ env.HYPRE_TOP_DIR }}
-          key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
+    - name: Cache Hypre Install
+      id: hypre-cache
+      uses: actions/cache@v2
+      with:
+        path: ${{ env.HYPRE_TOP_DIR }}
+        key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.0
 
-      - name: Get Hypre
-        if: steps.hypre-cache.outputs.cache-hit != 'true'
-        uses: mfem/github-actions/build-hypre@v2.4
-        with:
-          archive: ${{ env.HYPRE_ARCHIVE }}
-          dir: ${{ env.HYPRE_TOP_DIR }}
-          target: int32
+    - name: Get Hypre
+      if: steps.hypre-cache.outputs.cache-hit != 'true'
+      uses: mfem/github-actions/build-hypre@v2.0
+      with:
+        archive: ${{ env.HYPRE_ARCHIVE }}
+        dir: ${{ env.HYPRE_TOP_DIR }}
+        target: int32
 
-      - name: Cache Metis Install
-        id: metis-cache
-        uses: actions/cache@v4
-        with:
-          path: ${{ env.METIS_TOP_DIR }}
-          key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
+    - name: Cache Metis Install
+      id: metis-cache
+      uses: actions/cache@v2
+      with:
+        path: ${{ env.METIS_TOP_DIR }}
+        key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
 
-      - name: Install Metis
-        if: steps.metis-cache.outputs.cache-hit != 'true'
-        uses: mfem/github-actions/build-metis@v2.4
-        with:
-          archive: ${{ env.METIS_ARCHIVE }}
-          dir: ${{ env.METIS_TOP_DIR }}
+    - name: Install Metis
+      if: steps.metis-cache.outputs.cache-hit != 'true'
+      uses: mfem/github-actions/build-metis@v2.0
+      with:
+        archive: ${{ env.METIS_ARCHIVE }}
+        dir: ${{ env.METIS_TOP_DIR }}
 
-      # MFEM build and test
-      - name: build-mfem
-        uses: mfem/github-actions/build-mfem@v2.4
-        with:
-          os: ${{ runner.os }}
-          target: opt
-          codecov: NO
-          mpi: par
-          build-system: make
-          hypre-dir: ${{ env.HYPRE_TOP_DIR }}
-          metis-dir: ${{ env.METIS_TOP_DIR }}
-          mfem-dir: mfem
+    # MFEM build and test
+    - name: build-mfem
+      uses: mfem/github-actions/build-mfem@v2.0
+      with:
+        os: ${{ runner.os }}
+        target: opt
+        codecov: NO
+        mpi: par
+        build-system: make
+        hypre-dir: ${{ env.HYPRE_TOP_DIR }}
+        metis-dir: ${{ env.METIS_TOP_DIR }}
+        mfem-dir: mfem
 
-      - name: test (no clean)
-        run: |
-          cd mfem && make test-noclean
+    - name: test (no clean)
+      run: |
+        cd mfem && make test-noclean
 
-      - name: gitignore
-        run: |
-          cd mfem/tests/scripts
-          ./runtest gitignore
+    - name: gitignore
+      run: |
+        cd mfem/tests/scripts
+        ./runtest gitignore

.github/workflows/mfem-sanitizer.yml

@@ -1,70 +0,0 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-name: "Sanitizer"
-
-permissions:
-  actions: write
-
-on:
-  push:
-    branches:
-      - master
-      - next
-  pull_request:
-  workflow_dispatch:
-
-jobs:
-  Serial:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
-        with:
-          access_token: ${{ github.token }}
-
-      - name: MFEM Checkout
-        uses: actions/checkout@v4
-        with:
-          path: mfem
-
-      - name: MFEM Build
-        uses: mfem/github-actions/build-mfem@v2.4
-        with:
-          os: ${{ runner.os }}
-          target: opt
-          mpi: seq
-          hypre-dir: unused-hypre-dir
-          metis-dir: unused-metis-dir
-          mfem-dir: mfem
-          build-system: make
-          library-only: false
-          config-options:
-            CXX="clang++-14"
-            CXXFLAGS="-g -O1 -std=c++11
-                      -fsanitize=address
-                      -fno-omit-frame-pointer
-                      -fsanitize-address-use-after-scope"
-
-      - name: MFEM Info
-        working-directory: mfem
-        run: make info
-
-      - name: MFEM Sanitize
-        working-directory: mfem
-        run:
-          ASAN_OPTIONS="detect_leaks=1,
-                        strict_init_order=1,
-                        strict_string_checks=1,
-                        check_initialization_order=1,
-                        detect_stack_use_after_return=1"
-          make test

.github/workflows/repo-check.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -9,142 +9,105 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-name: "Checks"
+name: repo-check
 
 permissions:
   actions: write
 
 on:
   push:
-  pull_request:
-  workflow_dispatch:
-
-# This workflow is run on pushes to any branch in the MFEM repo (with or without
-# PRs), as well as on updates to PRs from forks. In particular, we do not
-# duplicate work by running on both pushes and updates to local PRs. We do that
-# by checking if the workflow trigger is 'push' ("github.event_name == 'push'")
-# and if we are in a fork ("github.event.pull_request.head.repo.full_name !=
-# github.repository").
 
 jobs:
   file-headers-check:
-    runs-on: ubuntu-latest
-    if: |
-      (github.event_name == 'push' ||
-       github.event.pull_request.head.repo.full_name != github.repository)
+    runs-on: ubuntu-18.04
+
     steps:
-      - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.12.1
-        with:
-          access_token: ${{ github.token }}
+    - name: Cancel Previous Runs
+      uses: styfle/cancel-workflow-action@0.9.0
+      with:
+        access_token: ${{ github.token }}
+    - name: checkout mfem
+      uses: actions/checkout@v2
 
-      - name: checkout mfem
-        uses: actions/checkout@v4
+    - name: copyright check
+      id: copyright
+      run: |
+        ./config/githooks/pre-push --copyright
 
-      - name: copyright check
-        id: copyright
-        run: |
-          ./config/githooks/pre-push --copyright
+      continue-on-error: true
 
-        continue-on-error: true
+    - name: license check
+      id: license
+      run: |
+        ./config/githooks/pre-push --license
+      continue-on-error: true
 
-      - name: license check
-        id: license
-        run: |
-          ./config/githooks/pre-push --license
-        continue-on-error: true
+    - name: release check
+      id: release
+      run: |
+        ./config/githooks/pre-push --release
+      continue-on-error: true
 
-      - name: release check
-        id: release
-        run: |
-          ./config/githooks/pre-push --release
-        continue-on-error: true
-
-      - name: math check
-        id: math
-        run: |
-          ./config/githooks/pre-push --math
-        continue-on-error: true
-
-      - name: wrap-up
-        if: |
-          steps.copyright.outcome != 'success' ||
-          steps.license.outcome != 'success' ||
-          steps.release.outcome != 'success' ||
-          steps.math.outcome != 'success'
-        run: |
-          if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
-            echo "copyright check failed, unroll log for details"
-          fi
-          if [[ "${{ steps.license.outcome }}" != "success" ]]; then
-            echo "license check failed, unroll log for details"
-          fi
-          if [[ "${{ steps.release.outcome }}" != "success" ]]; then
-            echo "release check failed, unroll log for details"
-          fi
-          if [[ "${{ steps.math.outcome }}" != "success" ]]; then
-            echo "math check failed, unroll log for details"
-          fi
-          exit 1
+    - name: wrap-up
+      if: steps.copyright.outcome != 'success' || steps.license.outcome != 'success' || steps.release.outcome != 'success'
+      run: |
+        if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
+          echo "copyright check failed, unroll log for details"
+        fi
+        if [[ "${{ steps.license.outcome }}" != "success" ]]; then
+          echo "license check failed, unroll log for details"
+        fi
+        if [[ "${{ steps.release.outcome }}" != "success" ]]; then
+          echo "release check failed, unroll log for details"
+        fi
+        exit 1
 
   code-style:
-    runs-on: ubuntu-latest
-    if: |
-      (github.event_name == 'push' ||
-       github.event.pull_request.head.repo.full_name != github.repository)
+    runs-on: ubuntu-18.04
+
     steps:
-      - name: checkout mfem
-        uses: actions/checkout@v4
+    - name: checkout mfem
+      uses: actions/checkout@v2
 
-      - name: get astyle
-        run: |
-          sudo apt-get install astyle
+    - name: get astyle
+      run: |
+        sudo apt-get install astyle=3.1-1ubuntu2
 
-      - name: style check
-        run: |
-          ./config/githooks/pre-push --style
+    - name: style check
+      run: |
+        ./config/githooks/pre-push --style
 
   documentation:
-    runs-on: ubuntu-latest
-    if: |
-      (github.event_name == 'push' ||
-       github.event.pull_request.head.repo.full_name != github.repository)
+    runs-on: ubuntu-18.04
+
     steps:
-      - name: checkout mfem
-        uses: actions/checkout@v4
+    - name: checkout mfem
+      uses: actions/checkout@v2
 
-      - name: get doxygen and graphviz
-        run: |
-          sudo apt-get install doxygen graphviz
+    - name: get doxygen and graphviz
+      run: |
+        sudo apt-get install doxygen graphviz
 
-      - name: update doxygen config file
-        run: |
-          cd doc
-          doxygen -u CodeDocumentation.conf.in
-
-      - name: build documentation
-        run: |
-          cd tests/scripts
-          ./runtest documentation
+    - name: build documentation
+      run: |
+        cd tests/scripts
+        ./runtest documentation
 
   branch-history:
-    if: |
-      github.ref != 'refs/heads/next' &&
-      github.ref != 'refs/heads/master' &&
-      (github.event_name == 'push' ||
-       github.event.pull_request.head.repo.full_name != github.repository)
-    runs-on: ubuntu-latest
-    steps:
-      - name: checkout mfem
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
+    if: github.ref != 'refs/heads/next' && github.ref != 'refs/heads/master'
+    runs-on: ubuntu-18.04
 
-      - name: branch-history
-        run: |
-          # We override origin to make sure we point to the main repo.
-          # This is to have consistent test results on PRs from forks.
-          git remote remove origin
-          git remote add origin https://github.com/mfem/mfem.git
-          git checkout -b gh-actions-branch-history
-          ./config/githooks/pre-push --history
+    steps:
+    - name: checkout mfem
+      uses: actions/checkout@v2
+      with:
+        fetch-depth: 0
+
+    - name: branch-history
+      run: |
+        # We override origin to make sure we point to the main repo.
+        # This is to have consistent test results on PRs from forks.
+        git remote remove origin
+        git remote add origin https://github.com/mfem/mfem.git
+        git checkout -b gh-actions-branch-history
+        ./config/githooks/pre-push --history

.gitignore

@@ -21,15 +21,11 @@ CMakeFiles/
 # Default install location
 /mfem/
 
-# Typical build directory
-/build/
-
 # Generated files in main directory, config/ and docs/
 /deps.mk
 config/_config.hpp
 config/config.mk
 config/sample-runs-build.log
-config/user.cmake
 config/user.mk
 doc/CodeDocumentation.conf
 doc/CodeDocumentation.html
@@ -55,8 +51,8 @@ examples/ex1[04-9]
 examples/ex1[0-9]p
 examples/ex2[0-9]
 examples/ex2[0-9]p
-examples/ex3[0-9]
-examples/ex3[0-9]p
+examples/ex30
+examples/ex30p
 
 examples/refined.mesh
 examples/displaced.mesh
@@ -82,7 +78,6 @@ examples/deformed.*
 examples/velocity.*
 examples/elastic_energy.*
 examples/mode_*
-examples/mode_deriv_*
 examples/ex5-p-*.bp
 examples/ex9-p-*.bp
 examples/ex12-p-*.bp
@@ -113,12 +108,6 @@ examples/ex25p-*.*
 examples/ex28_*
 examples/ex28p_*
 examples/flux.*
-examples/dsol.*
-examples/cond.*
-examples/cond_j.*
-examples/cond_mesh.*
-examples/port_mesh.*
-examples/port_mode.*
 
 examples/amgx/ex1
 examples/amgx/ex1p
@@ -128,16 +117,11 @@ examples/amgx/sol.gf
 examples/amgx/mesh.*
 examples/amgx/sol.*
 
-examples/caliper/ex1
-examples/caliper/ex1p
-examples/caliper/refined.mesh
-examples/caliper/sol.gf
-examples/caliper/mesh.*
-examples/caliper/sol.*
-
-examples/ginkgo/ex1
-examples/ginkgo/refined.mesh
-examples/ginkgo/sol.gf
+examples/gingko/ex1
+examples/gingko/refined.mesh
+examples/gingko/sol.gf
+examples/gingko/mesh.*
+examples/gingko/sol.*
 
 examples/hiop/ex9
 examples/hiop/ex9p
@@ -163,8 +147,8 @@ examples/petsc/velocity.*
 examples/petsc/elastic_energy.*
 examples/petsc/mode_*
 
-examples/pumi/ex[12]
-examples/pumi/ex[16]p
+examples/pumi/ex1
+examples/pumi/ex[126]p
 examples/pumi/refined.mesh
 examples/pumi/sol.gf
 examples/pumi/mesh.*
@@ -209,9 +193,6 @@ miniapps/gslib/field-diff
 miniapps/gslib/field-interp
 miniapps/gslib/findpts
 miniapps/gslib/pfindpts
-miniapps/gslib/schwarz_ex1
-miniapps/gslib/schwarz_ex1p
-miniapps/gslib/interpolated.gf
 
 miniapps/meshing/mobius-strip
 miniapps/meshing/klein-bottle
@@ -220,28 +201,21 @@ miniapps/meshing/twist
 miniapps/meshing/mesh-explorer
 miniapps/meshing/shaper
 miniapps/meshing/extruder
-miniapps/meshing/fit-node-position
 miniapps/meshing/trimmer
-miniapps/meshing/reflector
 miniapps/meshing/mesh-optimizer
 miniapps/meshing/pmesh-optimizer
-miniapps/meshing/pmesh-fitting
 miniapps/meshing/minimal-surface
 miniapps/meshing/pminimal-surface
 miniapps/meshing/polar-nc
-miniapps/meshing/mesh-quality
 miniapps/meshing/mobius-strip.mesh
 miniapps/meshing/klein-bottle.mesh
 miniapps/meshing/toroid-*.mesh
 miniapps/meshing/twist-*.mesh
 miniapps/meshing/mesh-explorer.mesh
 miniapps/meshing/partitioning.txt
-miniapps/meshing/mesh-explorer-visit*
-miniapps/meshing/mesh-explorer-paraview/
 miniapps/meshing/shaper.mesh
 miniapps/meshing/extruder.mesh
 miniapps/meshing/trimmer.mesh
-miniapps/meshing/reflected.mesh
 miniapps/meshing/optimized*
 miniapps/meshing/perturbed*
 miniapps/meshing/polar-nc.mesh
@@ -265,28 +239,17 @@ miniapps/navier/navier_kovasznay_vs
 miniapps/navier/navier_tgv
 miniapps/navier/navier_shear
 miniapps/navier/navier_3dfoc
-miniapps/navier/navier_turbchan
-miniapps/navier/navier_cht
 miniapps/navier/tgv_out*.txt
 miniapps/navier/*_output
 
 miniapps/nurbs/nurbs_ex1
 miniapps/nurbs/nurbs_ex1p
 miniapps/nurbs/nurbs_ex11p
-miniapps/nurbs/nurbs_printfunc
-miniapps/nurbs/nurbs_patch_ex1
-miniapps/nurbs/nurbs_curveint
 miniapps/nurbs/refined.mesh
 miniapps/nurbs/mesh.*
 miniapps/nurbs/sol.*
 miniapps/nurbs/mode_*
 miniapps/nurbs/Example1*
-miniapps/nurbs/sin-fit.mesh
-miniapps/nurbs/CurveInt
-miniapps/nurbs/nurbs_naca_cmesh
-miniapps/nurbs/naca-cmesh.mesh
-miniapps/nurbs/glvis_naca-cmesh.mesh
-miniapps/nurbs/Naca_cmesh
 
 miniapps/performance/ex1
 miniapps/performance/ex1p
@@ -296,27 +259,16 @@ miniapps/performance/sol.*
 
 miniapps/shifted/distance
 miniapps/shifted/ParaViewDistance
-miniapps/shifted/ParaViewLSF
-miniapps/shifted/extrapolate
-miniapps/shifted/ParaViewExtrapolate
 miniapps/shifted/diffusion
 miniapps/shifted/diffusion.mesh
 miniapps/shifted/diffusion.gf
 miniapps/shifted/ParaViewDiffusion
-miniapps/shifted/lsf_integral
 
 miniapps/tools/display-basis
 miniapps/tools/load-dc
 miniapps/tools/convert-dc
 miniapps/tools/lor-transfer
-miniapps/tools/plor-transfer
 miniapps/tools/get-values
-miniapps/tools/tmop-check-metric
-miniapps/tools/tmop-metric-magnitude
-miniapps/tools/nodal-transfer
-miniapps/tools/ParaView
-miniapps/tools/gridfunc_*
-miniapps/tools/mesh_*
 
 miniapps/toys/automata
 miniapps/toys/life
@@ -342,33 +294,13 @@ miniapps/toys/mondrian.mesh
 miniapps/solvers/block-solvers
 miniapps/solvers/lor_solvers
 miniapps/solvers/plor_solvers
-miniapps/solvers/lor_elast
 miniapps/solvers/ParaView
 miniapps/solvers/mesh.*
 miniapps/solvers/sol.*
 
-miniapps/hdiv-linear-solver/darcy
-miniapps/hdiv-linear-solver/grad_div
-
 miniapps/parelag/MultilevelHcurlHdivSolver
 miniapps/parelag/*.mesh
 
-miniapps/multidomain/multidomain
-miniapps/hooke/hooke
-
-miniapps/dpg/diffusion
-miniapps/dpg/pdiffusion
-miniapps/dpg/convection-diffusion
-miniapps/dpg/pconvection-diffusion
-miniapps/dpg/acoustics
-miniapps/dpg/pacoustics
-miniapps/dpg/maxwell
-miniapps/dpg/pmaxwell
-miniapps/dpg/ParaView
-
-miniapps/spde/generate_random_field
-miniapps/spde/ParaView
-
 # Unit test binary and outputs
 tests/unit/output_meshes
 tests/unit/unit_tests
@@ -381,8 +313,6 @@ tests/unit/tmop_pa_tests_*
 tests/unit/ptmop_pa_tests_*
 tests/unit/ceed_tests
 tests/unit/debug_device_tests
-tests/unit/parallel_in_serial.mesh
-tests/unit/parallel_in_serial.gf
 
 # Benchmark binaries
 tests/benchmarks/bench_ceed

.gitlab-ci.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

.gitlab/configs/common.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

.gitlab/configs/corona-config.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -18,14 +18,14 @@ variables:
     - shell
     - corona
   rules:
-    # Don't run corona jobs if...
+    # Don’t run corona jobs if...
     # Note: This makes corona an "opt-in" machine. To activate builds on corona
     # for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
     # "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
     # pipeline there.
     - if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
       when: never
-    # Don't run autotest update if...
+    # Don’t run autotest update if...
     - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
       when: never
     # Report success on success status

.gitlab/configs/lassen-config.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -45,5 +45,5 @@ variables:
     - echo ${MFEM_DATA_DIR}
     - echo ${SPEC}
     # Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
-    - lalloc 1 -W 45 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+    - lalloc 1 -W 30 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
   needs: [setup]

.gitlab/configs/quartz-config.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -52,4 +52,4 @@ variables:
     - echo ${JOBID}
     - echo ${MFEM_DATA_DIR}
     - echo ${SPEC}
-    - srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+    - srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 30 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data

.gitlab/configs/report-build-and-test.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -20,14 +20,16 @@
     - |
       (
         date
-        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
-        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
-        # every 5 seconds; we may want to add a counter for the number of
+        echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
+        # try to get an excusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
+        # command to hang indefinitely sometimes, so we use the timeout & retry
+        # as a workaround; we may want to add a counter for the number of
         # retries to interrupt a potential infinite loop
-        while ! flock -n 9; do
-          sleep 5
+        while ! flock -w 5 9; do
+          true
         done
-        echo "Acquired lock on '$PWD/autotest.lock'"
+        echo "Aquired lock on '$PWD/autotest.lock'"
         date
         # Report SUCCESS while holding the file lock on 'autotest.lock'.
         # The next script uses the following environment variables:
@@ -53,14 +55,16 @@
     - |
       (
         date
-        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
-        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
-        # every 5 seconds; we may want to add a counter for the number of
+        echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
+        # try to get an excusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
+        # command to hang indefinitely sometimes, so we use the timeout & retry
+        # as a workaround; we may want to add a counter for the number of
         # retries to interrupt a potential infinite loop
-        while ! flock -n 9; do
-          sleep 5
+        while ! flock -w 5 9; do
+          true
         done
-        echo "Acquired lock on '$PWD/autotest.lock'"
+        echo "Aquired lock on '$PWD/autotest.lock'"
         date
         # Report FAILURE while holding the file lock on 'autotest.lock'.
         # The next script uses the following environment variables:

.gitlab/configs/setup-baseline.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -45,14 +45,16 @@ setup_baseline:
     - |
       (
         date
-        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
-        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
-        # every 5 seconds; we may want to add a counter for the number of
+        echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
+        # try to get an excusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
+        # command to hang indefinitely sometimes, so we use the timeout & retry
+        # as a workaround; we may want to add a counter for the number of
         # retries to interrupt a potential infinite loop
-        while ! flock -n 9; do
-          sleep 5
+        while ! flock -w 5 9; do
+          true
         done
-        echo "Acquired lock on '$PWD/autotest.lock'"
+        echo "Aquired lock on '$PWD/autotest.lock'"
         date
         # clone/update the autotest repo while holding the file lock on
         # 'autotest.lock'

.gitlab/configs/setup-build-and-test.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -34,14 +34,16 @@ setup:
     - |
       (
         date
-        echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
-        # try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
-        # try every 5 seconds; we may want to add a counter for the number of
+        echo "Waiting to aquire lock on '$PWD/mfem-data.lock' ..."
+        # try to get an excusive lock on fd 9 (mfem-data.lock) repeating the try
+        # every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
+        # command to hang indefinitely sometimes, so we use the timeout & retry
+        # as a workaround; we may want to add a counter for the number of
         # retries to interrupt a potential infinite loop
-        while ! flock -n 9; do
-          sleep 5
+        while ! flock -w 5 9; do
+          true
         done
-        echo "Acquired lock on '$PWD/mfem-data.lock'"
+        echo "Aquired lock on '$PWD/mfem-data.lock'"
         date
         # clone/update the mfem/data repo while holding the file lock on
         # 'mfem-data.lock'
@@ -65,14 +67,16 @@ setup:
     - |
       (
         date
-        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
-        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
-        # every 5 seconds; we may want to add a counter for the number of
+        echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
+        # try to get an excusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
+        # command to hang indefinitely sometimes, so we use the timeout & retry
+        # as a workaround; we may want to add a counter for the number of
         # retries to interrupt a potential infinite loop
-        while ! flock -n 9; do
-          sleep 5
+        while ! flock -w 5 9; do
+          true
         done
-        echo "Acquired lock on '$PWD/autotest.lock'"
+        echo "Aquired lock on '$PWD/autotest.lock'"
         date
         # clone/update the autotest repo while holding the file lock on
         # 'autotest.lock'

.gitlab/corona-build-and-test.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -23,7 +23,7 @@ allocate_resource:
   stage: allocate_resource
   script:
     - echo ${ALLOC_NAME}
-    - salloc --exclusive --nodes=1 --partition=mi60 --time=45 --no-shell --job-name=${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --partition=mi60 --time=30 --no-shell --job-name=${ALLOC_NAME}
   timeout: 6h
   needs: [setup]
 

.gitlab/lassen-build-and-test.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -14,14 +14,14 @@ stages:
   - build_and_test
   - report
 
-opt_mpi_cuda_xl_16_1_1_12:
+opt_mpi_cuda_xl_16_1_1_8:
   variables:
-    SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
+    SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
   extends: .build_and_test_on_lassen
 
 opt_mpi_cuda_hypre_cuda_xl:
   variables:
-    SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
+    SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
   extends: .build_and_test_on_lassen
 
 # Jobs report

.gitlab/quartz-baseline.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -51,8 +51,6 @@ cleanup:
   script:
     - echo "BUILD_ROOT=${BUILD_ROOT}"
     - rm -rf "${BUILD_ROOT}" || true
-    - echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
-    - make -C "${CI_PROJECT_DIR}" distclean
 
 report_baseline:
   extends: [.on_quartz]
@@ -66,14 +64,16 @@ report_baseline:
     - |
       (
         date
-        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
-        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
-        # every 5 seconds; we may want to add a counter for the number of
+        echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
+        # try to get an excusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
+        # command to hang indefinitely sometimes, so we use the timeout & retry
+        # as a workaround; we may want to add a counter for the number of
         # retries to interrupt a potential infinite loop
-        while ! flock -n 9; do
-          sleep 5
+        while ! flock -w 5 9; do
+          true
         done
-        echo "Acquired lock on '$PWD/autotest.lock'"
+        echo "Aquired lock on '$PWD/autotest.lock'"
         date
         # ----------------------
         cd ${AUTOTEST_ROOT}/autotest || \
@@ -82,20 +82,18 @@ report_baseline:
         rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
         rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
         cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
+        # We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
+        if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
+          cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
+        fi
         printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
           >> ${rundir}/pipeline.txt
-        # We create an autotest-email.html file, because that's how we signal
-        # that there was an error / diff (temporary).
-        if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
-           [[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
-          cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
-        fi
         msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
         if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
           git pull && \
           git add ${rundir} && \
           git commit -m "${msg}" && \
-          ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+          git push origin master
         else
           for file in ${rundir}/*; do
             echo "------------------------------"

.gitlab/quartz-build-and-test.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -23,43 +23,48 @@ allocate_resource:
   stage: allocate_resource
   script:
     - echo ${ALLOC_NAME}
-    - salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --partition=pdebug --time=30 --no-shell --job-name=${ALLOC_NAME}
   timeout: 6h
 
 # GitLab jobs for the Quartz machine at LLNL
-debug_ser_gcc_10:
+debug_ser_gcc_4_9_3:
   variables:
-    SPEC: "%gcc@10.3.1 +debug~mpi"
+    SPEC: "%gcc@4.9.3 +debug~mpi"
   extends: .build_and_test_on_quartz
 
-debug_par_gcc_10:
+debug_ser_gcc_6_1_0:
   variables:
-    SPEC: "%gcc@10.3.1 +debug+mpi"
+    SPEC: "%gcc@6.1.0 +debug~mpi"
   extends: .build_and_test_on_quartz
 
-opt_ser_gcc_10:
+debug_par_gcc_6_1_0:
   variables:
-    SPEC: "%gcc@10.3.1 ~mpi"
+    SPEC: "%gcc@6.1.0 +debug+mpi"
   extends: .build_and_test_on_quartz
 
-opt_par_gcc_10:
+opt_ser_gcc_6_1_0:
   variables:
-    SPEC: "%gcc@10.3.1"
+    SPEC: "%gcc@6.1.0 ~mpi"
   extends: .build_and_test_on_quartz
 
-opt_par_gcc_10_sundials:
+opt_par_gcc_6_1_0:
   variables:
-    SPEC: "%gcc@10.3.1 +sundials"
+    SPEC: "%gcc@6.1.0"
   extends: .build_and_test_on_quartz
 
-opt_par_gcc_10_petsc:
+opt_par_gcc_6_1_0_sundials:
   variables:
-    SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
+    SPEC: "%gcc@6.1.0 +sundials"
   extends: .build_and_test_on_quartz
 
-opt_par_gcc_10_pumi:
+opt_par_gcc_6_1_0_petsc:
   variables:
-    SPEC: "%gcc@10.3.1 +pumi"
+    SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
+  extends: .build_and_test_on_quartz
+
+opt_par_gcc_6_1_0_pumi:
+  variables:
+    SPEC: "%gcc@6.1.0 +pumi"
   extends: .build_and_test_on_quartz
 
 # Release

.gitlab/scripts/baseline

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -42,34 +42,47 @@ fi
 # post
 mkdir ${artifacts_path}
 
-status=0
-if [[ -f ${BASELINE_TEST}.out ]]; then
-  cp ${BASELINE_TEST}.out ${artifacts_path}
-fi
-if [[ -s ${glob_err} ]]; then
-  echo "ERROR during ${BASELINE_TEST} execution"
-  echo "Here is the ${glob_err} file content"
+if [[ -s ${glob_err} ]]
+then
+  echo "ERROR during ${BASELINE_TEST} execution";
+  echo "Here is the ${glob_err} file content";
   cat ${glob_err}
   cp ${glob_err} ${artifacts_path}/${glob_err}
-  status=1
-fi
-if [[ -f ${base_patch} ]]; then
+  exit 1;
+elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
+then
+  echo "Something went WRONG in ${BASELINE_TEST}:";
+  echo "Either ${base_patch} or ${base_out} should exists";
+  exit 1;
+elif [[ -f ${base_patch} ]]
+then
   echo "${BASELINE_TEST}: Differences found, patch generated"
   cp ${base_patch} ${artifacts_path}/${base_patch}
-elif [[ -f ${base_out} ]]; then
+elif [[ -f ${base_out} ]]
+then
   echo "${BASELINE_TEST}: Differences found, replacement file generated"
   cp ${base_out} ${artifacts_path}/${base_out}
 fi
+
+if [[ -f ${BASELINE_TEST}.out ]]; then
+  cp ${BASELINE_TEST}.out ${artifacts_path}
+fi
+
 # base_diff won't even exist if there is no difference.
-if [[ -f ${base_diff} ]]; then
+if [[ -f ${base_diff} ]]
+then
   echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
   cat ${base_diff}
   cp ${base_diff} ${artifacts_path}/${base_diff}
-  status=1
+  # We create a .err file, because that's how we signal that there was a diff.
+  cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
 fi
-if [[ $status -eq 0 ]]; then
+
+if [[ ! -s ${base_diff} ]]
+then
   echo "${BASELINE_TEST}: PASSED"
+  true
 else
   echo "${BASELINE_TEST}: FAILED"
+  false
 fi
-exit $status

.gitlab/scripts/git_try_to_push

@@ -1,41 +0,0 @@
-#!/bin/bash
-
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Try to push to the remote 5 times. If the push fails, and the local and remote
-# have diverged, then pull from the remote to merge changes, and try pushing
-# again. If some other failure happens
-for i in {1..5}; do
-   git push origin master && exit 0
-   # Wait for 20 seconds in case someone else is pushing to the remote
-   # concurrently
-   sleep 20
-   # Fetch any updates from the remote
-   git remote update
-   # Get the latest commit on the local branch
-   LOCAL=$(git rev-parse @)
-   # Get the latest commit on the remote
-   REMOTE=$(git rev-parse @{u})
-   # Get the common ancestor
-   BASE=$(git merge-base @ @{u})
-   # Have the local and remote diverged?
-   if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
-      git pull
-      if [[ $? == 0 ]]; then
-         continue
-      else
-         exit 1 # Something else went wrong trying to pull
-      fi
-   fi
-done
-
-exit 1 # Did not succeed in 5 attempts

.gitlab/scripts/rebaseline

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

.gitlab/scripts/report_build_and_test_failure

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -32,7 +32,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
   git pull && \
   git add ${rundir} && \
   git commit -m "${msg}" && \
-  ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+  git push origin master
 else
   for file in ${rundir}/*; do
     echo "------------------------------"

.gitlab/scripts/report_build_and_test_success

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -29,7 +29,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
   git pull && \
   git add ${rundir} && \
   git commit -m "${msg}" && \
-  ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+  git push origin master
 else
   for file in ${rundir}/*; do
     echo "------------------------------"

.gitlab/scripts/safe_create_rundir

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

CHANGELOG

@@ -8,525 +8,92 @@
                                https://mfem.org
 
 
-Version 4.6.1 (development)
+Version 4.3.1 (development)
 ===========================
 
-Meshing improvements
---------------------
-- Introduced formulas for refinement of patches in NURBS meshes. Refinement by
-  arbitrary integer factors is also enabled, e.g. in the mesh-explorer miniapp.
-  NURBS coarsening and knot removal are also introduced.
+- Add hipSPARSE support for sparse mat-vec multiplications.
 
-Discretization improvements
----------------------------
-- Introduced support for higher order non conformal Nedelec elements on
-  simplices in ParMesh.
-- Introduced support for internal boundary elements in nonconformal adapted
-  meshes.
+- Added support for using the HYPRE library built with HIP support. Similar to
+  the HYPRE + CUDA support added earlier, most of the MFEM examples and miniapps
+  work transparently with HYPRE + HIP builds. This includes the BoomerAMG, AMS,
+  and ADS solvers.
 
-- Added functionality for construction of cut-surface and cut-volume
-  IntegrationRules through a moment-fitting approach. The cut is specified by
-  the zero level set of a Coefficient. See fem/intrules_cut.hpp and Example 38.
-
-GPU support
-----------------------------
-- Added support for full assembly on simplices.
-- Added functionality for BilinearFormIntegrators to use kernels that work for both
-  tensor and unstructured elements.
-- Added partial assembly for linear elasticity. Does not use sum factorization for now.
-
-New and updated examples and miniapps
--------------------------------------
-- Added a new block solver in miniapp/solvers for the Darcy problem.
-  The new solver is based on a Bramble-Pasciak preconditioning. User can
-  use and implement their own preconditioner for the mass matrix.
-
-- Added miniapp to demonstrate new elasticity integrator and unstructured element GPU support,
-  and a block diagonal preconditioner using low order refinement. Allows comparison with
-  currently existing legacy mode integrator. See miniapps/solvers/lor_elast.
-
-Miscellaneous
--------------
-- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
-
-- Updated the Doxygen documentation style, which now requires Doxygen version
-  1.9.8 or later. See the doc/ directory.
-
-- Improved thread safety for global variables in the library, for example
-  IntegrationRules IntRules, RefinedIntRules, GeometryRefiner
-  GlobGeometryRefiner, and FiniteElement::dof2quad_array.
-
-
-Version 4.6, released on September 27, 2023
-===========================================
-
-- MFEM is now available in Homebrew and can be installed on a Mac with just
-  "brew install mfem". See https://formulae.brew.sh/formula/mfem.
-
-Meshing improvements
---------------------
-- Added asymptotically-balanced TMOP compound metrics 90, 94, 328, 338. A new
-  tool, tmop-metric-magnitude, can be used to track how metrics change under
-  geometric perturbations. See miniapps/tools.
-
-- Several NURBS meshing improvements:
-  * Support for free connectivity of NURBS patches allowing for more complex
-    patch configurations such as C-meshes.
-  * New methods to set and get attributes on NURBS patches and patch boundaries.
-  * The edge to knot map for NURBS meshes can be determined automatically. It is
-    no longer needed to specify this in the NURBS mesh.
-  * Added curve interpolation method for NURBS.
-  * Added new small miniapp for printing of shape functions of a KnotVector
-  * See miniapps/nurbs for example meshes and miniapps.
-
-Discretization improvements
----------------------------
-- SubMesh and ParSubMesh have been extended to support the transfer of
-  Nedelec and Raviart-Thomas finite element spaces.
-
-- Added support for partial assembly on NURBS patches, and NURBS-patch sparse
-  matrix assembly. Patch matrix assembly includes the option to use reduced
-  approximate integration rules, computed by the newly implemented non-negative
-  least-squares (NNLS) solver.
-
-- Support for parallel transfer of H1 fields using the low-order refined (LOR)
-  transfer operators in L2ProjectionGridTransfer
-
-- Added KDTree class for 2D/3D set of points, which is then utilized in the new
-  KDTreeNodalProjection class to project a function defined on an arbitrary set
-  of points onto an MFEM grid function. This functionality is demonstrated in
-  the nodal-transfer miniapp. The current implementation is serial only. Further
-  extensions can include search in arbitrary dimensional spaces.
-
-- Added support for p-refined meshes in GSLIB-FindPoints.
-
-- Device kernels can now access device-specific DOF and quadrature limits using
-  the DofQuadLimits structure, allowing increased limits when executing on CPU.
-  The limits for the runtime selected device can be accessed in host code using
-  DeviceDofQuadLimits::Get(). The global constants MAX_D1D and MAX_Q1D are no
-  longer available.
-
-- Face restriction operators for Nedelec and Raviart-Thomas finite element
-  spaces are now supported through the ConformingFaceRestriction class.
-
-- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
-
-Linear and nonlinear solvers
-----------------------------
-- Updated the MUMPS interface to support multiple right-hand sides, block
-  low-rank compression, builds using 64-bit integers, and other improvements.
-
-- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
-  The interface provides a serial (OpenMP shared memory) version of Pardiso for
-  use with SparseMatrix. This complements the existing parallel (MPI distributed
-  memory) version already available through the CPardiso MFEM integration.
-
-- Added HIP support to the PETSc and SUNDIALS interfaces.
-
-- Efficient GPU-accelerated LOR assembly now supports surface meshes.
-
-New and updated examples and miniapps
--------------------------------------
-- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
-  saddle-point solver methodology, suitable for high-order discretizations and
-  for GPU acceleration. Examples illustrating the solution of Darcy and grad-div
-  problems are included. See miniapps/hdiv-linear-solver.
-
-- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
-  and parallel examples for diffusion, convection-diffusion, acoustics and
-  Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
-  (Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
-  integrators are added in support of DPG systems: TraceIntegrator,
-  NormalTraceIntegrator and TangentTraceIntegrator. See miniapps/dpg.
-
-- Added a new miniapp that implements the SPDE method for generating Gaussian
-  random fields of Matern covariance. The resulting random field can be used,
-  e.g., to model material uncertainties. See miniapps/spde.
-
-- Added a new parallel LOR transfer miniapp, plor-transfer, which mirrors the
-  functionality of the serial LOR transfer miniapp. See miniapps/tools.
-
-- New serial miniapp, nodal-transfer, demonstrating the use of KDTree to map a
-  parallel grid function to a different parallel partitioning of the same mesh.
-
-- Added 3 additional TMOP miniapps in miniapps/meshing:
-  * Mesh-Quality evaluates quality using size, skewness, and aspect-ratio
-    computed from the Jacobian of the transformation.
-  * Mesh-Fitting can be used for interface and boundary fitting to implicit
-    domains defined using level-set functions.
-  * Fit-Node-Position fits selected mesh nodes to specified positions, while
-    maintaining overall mesh quality.
-
-- Added 4 new example codes:
-  * Example 34/34p solves a simple magnetostatic problem where source terms and
-    boundary conditions are transferred with SubMesh objects.
-  * Example 35p implements H1, H(curl) and H(div) variants of a damped harmonic
-    oscillator with field transfer using SubMesh objects.
-  * Example 36/36p demonstrates the solution of the obstacle problem with a new
-    finite element method (proximal Galerkin).
-  * Example 37/37p demonstrates topology optimization with MFEM.
-
-- Added a random refinement option to the mesh-explorer miniapp to assist users
-  in experimenting with nonconforming meshes.
-
-- Moved the distance solver methods from miniapps/shifted to miniapps/common.
-
-Miscellaneous
--------------
-- Improved lambda body debugging with the addition of mfem::forall functions.
-  These functions can take the place of the MFEM_FORALL macros, which have been
-  preserved for backwards compatibility.
-
-- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
-  based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
-
-- Reorganized files for bilinear form, linear form, and nonlinear form integrators
-  in the fem/integ/ subdirectory.
-
-- FiniteElementSpace::GetFE has been updated to abort instead of returning NULL for
-  an empty partition.
-
-- Various other simplifications, extensions, and bugfixes in the code.
-
-
-Version 4.5.2, released on March 23, 2023
-=========================================
-
-- Added support for pyramids in non-conforming meshes. Currently only isotropic
-  refinement is supported in this case.
-
-- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
-  functionality instead for mesh optimization. See the mesh-optimizer miniapp.
-
-- Added a fast normalization-based distance solver, see the Distance miniapp
-  in the miniapps/shifted/ directory.
-
-- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
-  hexahedral mesh about a plane.
-
-- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
-  domain boundary.
-
-- Added an option to auto-balance compound TMOP metrics.
-
-- Fixed a bug in TMOP metric 301.
-
-- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
-  as the coarsening operator for non-conforming AMR meshes.
-
-- Added support for GridFunction::GetGradients() and GetVectorGradient() on
-  face-neighbor elements.
-
-- Added support for pyramids in Gmsh meshes.
-
-- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
-  formats using the corresponding DataCollection. See option 'D' in the menu.
-
-- VisItDataCollection now correctly handles data collection names containing
-  underscores.
-
-- Added support for shared Windows builds with MSVC through CMake.
-  Developers note: this enhancement is facilitated by the addition of the macro
-  MFEM_EXPORT, see config.hpp for more details on its usage.
-
-- The following integrations have updated minimum version requirements:
-  * RAJA >= 2022.10.3
-
-API changes
------------
-- The implicit cast methods of class Vector to 'double *' and 'const double *'
-  have been deprecated and generate deprecation warnings if used. They will be
-  removed in a future release.
-
-- The methods Mesh::GetFaceBaseGeometry and Mesh::GetFaceGeometryType have been
-  deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
-  should be used instead.
-
-- VisItDataCollection::SetPadDigits() no longer alters the number of digits
-  used to represent the MPI rank because VisIt seems to require 6 digits.
-  This parameter can still be explicitly overridden with SetPadDigitsRank().
-
-
-Version 4.5, released on October 22, 2022
-=========================================
-
-Meshing improvements
---------------------
-- Added new SubMesh and ParSubMesh classes that can be used to extract a subset
-  of a given Mesh. These classes have the same functionality as Mesh and ParMesh
-  and work with all existing MFEM interfaces like finite element spaces etc.
-
-- Added a method, ParMesh::GetSerialMesh(), that reconstructs a partitioned
-  parallel mesh on a given single rank. Also, added ParMesh::PrintAsSerial(),
-  which saves the reconstructed serial mesh to a C++ stream on rank 0.
-
-- Added more 3D TMOP metrics, as well as specialized metrics for mesh
-  untangling and worst-case quality improvement.
-
-- Added a new method, Mesh::NodesUpdated, which should be called after the mesh
-  node coordinates have changed, e.g. after the mesh has moved. This is
-  necessary, for example, with device assembly of linear and bilinear forms.
-
-- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
-
-Discretization improvements
----------------------------
-- Added full assembly and device support for several LinearForm integrators:
-  * DomainLF: (f, v)
-  * VectorDomainLF: ((f1,...,fn), (v1,...,vn))
-  * DomainLFGrad: (f, grad(v))
-  * VectorDomainLFGrad: ((f1x,f1y,f1z,...,fnx,fny,fnz), grad(v1,...,vn))
-  The device assembly of linear forms has to be explicitly enabled by calling
-  LinearForm::UseFastAssembly(true), otherwise the legacy linear form assembly
-  is used by default.
-
-- Added support for assembling low-order-refined matrices using a GPU-enabled
-  "batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
-  acceleration with arbitrary user-supplied coefficients.
-
-- Added a new class FaceQuadratureSpace that allows for the construction of
-  QuadratureFunctions on the interior or boundary faces of a mesh.
-
-- Added a class CoefficientVector for efficient access of variable coefficient
-  values at quadrature points (in particular for GPU/device kernels).
-
-- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
-  spatial Gaussian white noise.
-
-- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
-  See fem/estimators.hpp.
-
-- Various fixes and improvements in LinearFormExtension.
-
-Linear and nonlinear solvers
-----------------------------
-- Added a new class DGMassInverse that performs a local element-wise CG
-  iteration to solve systems involving the discontinuous Galerkin mass matrix,
-  including support for device/GPU acceleration.
-
-- Added more flexibility to the constrained solver classes:
-  * PenaltyConstrainedSolver now allows for a vector of penalty parameters
-    (necessary for penalty contact)
-  * PenaltyConstrainedSolver and EliminationSolver can use GMRES or PCG
-  * All constraint solver classes can take a user-defined preconditioner
-
- - Added functions to toggle additional options for the SuperLU_Dist and Hypre
-   preconditioners (ParaSails, Euclid, ILU).
-
-- Added boundary elimination with device support for `SparseMatrix` and
-  `HypreParMatrix`.
-
-New and updated examples and miniapps
--------------------------------------
-- Added a new elasticity miniapp, Hooke, that showcases a low-level approach of
-  using MFEM to solve a nonlinear elasticity problem based on the fundamental
-  finite element operator decomposition. The miniapp also integrates with
-  automatic differentiation tools like a native dual number implementation or a
-  third party library such as Enzyme. See miniapps/elasticity for more details.
-
-- Added example for body-fitted volumetric and shape integration using the
-  Algoim library in miniapps/shifted.
-
-- Add a new example code, Example 33/33p, to demonstrate the solution of
-  spectral fractional PDEs with MFEM.
-
-Integrations, testing and documentation
----------------------------------------
-- Added a Dockerfile for a simple MFEM container, see config/docker/README.md.
-  More sophisticated developer containers are available in the new repo
-  https://github.com/mfem/containers.
-
-- Added support for the LLVM-based automatic differentiation tool Enzyme, see
-  https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
-  header are provided. The functionality and interaction are demonstrated in a
-  new miniapp in miniapps/elasticity.
-
-- Added support for partial assembly and fully matrix-free operators on mixed
-  meshes (different element types and p-adaptivity) through libCEED, including
-  device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
-  currently limited to 2D serial meshes. All mixed element topologies are
-  supported in both serial and parallel.
-
-- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
-  which provides parallel non-conforming, non-matching, variational, volumetric
-  mesh information transfer. With ParMortarAssember, fields can be exchanged
-  between arbitrarily distributed and unrelated finite element meshes in a
-  variationally consistent way.
-
-- Fully encapsulated SUNDIALS `N_Vector` object within the `SundialsNVector`
-  class by removing deprecated (e.g. `HypreParVector::ToNVector`) and
-  non-deprecated (e.g. `Vector::ToNVector`) functions in other classes.
-
-- New benchmark for the different assembly levels inspired by the CEED
-  Bake-Off Problems, see tests/benchmarks/bench_assembly_levels.cpp.
-
-- Added Windows 2022 CI testing with GitHub actions.
-
-Miscellaneous
--------------
-- The method SparseMatrix::EnsureMultTranspose() is now automatically called
-  by the methods AddMultTranspose(), MultTranspose(), and AbsMultTranspose().
-  Added a method with the same name to class HypreParMatrix which is also called
-  automatically by the HypreParMatrix::MultTranspose() methods.
-
-- Updated various MemoryUsage methods to return 'std::size_t' instead of 'long'
-  since the latter is 32-bit in Win64 builds.
-
-- When using `AssemblyLevel::FULL`, `FABilinearFormExtension::FormSystemMatrix`
-  outputs an `OperatorHandle` containing a `SparseMatrix` in serial, and an
-  `HypreParMatrix` in parallel (instead of a `ConstrainedOperator`).
-
-- In various places in the library, replace the use of 'long' with 'long long'
-  to better support Win64 builds where 'long' is 32-bit and 'long long' is
-  64-bit. On Linux and MacOS, both types are typically 64-bit.
-
-- The behavior of GridFunction::GetTrueVector() has been changed to not return
-  an empty true vector.
-
-- Added support for ordering search points byVDIM in FindPointsGSLIB.
-
-- Various other simplifications, extensions, and bugfixes in the code.
-
-
-Version 4.4, released on March 21, 2022
-=======================================
-
-Linear and nonlinear solvers
-----------------------------
-- Added support for using the hypre library built with HIP support. Similar to
-  the existing hypre + CUDA support, most of the MFEM examples and miniapps work
-  transparently with hypre + HIP builds. This includes the BoomerAMG, AMS, and
-  ADS solvers.
-
-- Added a simple singleton class, Hypre, to automatically set hypre's global
-  parameters, particularly GPU-relevant options. Updated parallel example codes
-  and miniapps to call Hypre::Init() where appropriate.
-
-- Added hipSPARSE support for sparse matrix-vector multiplications.
-
-- More explicit and consistent formatting of the output of iterative solvers
+- More explicit and consistent formating of the output of iterative solvers
   with the new IterativeSolver::PrintLevel options. See linalg/solvers.hpp.
 
-Meshing improvements
---------------------
-- New TMOP-based methods for hr-adaptivity, interface fitting, and tangential
-  relaxation of high-order meshes.
+- Added support for automatic differentiation. Users can select between native
+  implementation and external library implementation during configuration. One
+  parallel and two serial examples are implemented in the miniapps/autodiff/
+  directory.
+
+- GridFunctionCoefficient (and the related vector, gradient, divergence, and
+  curl classes) now work properly with LORDiscretization and LORSolver.
+
+- Added support for mesh preprocessing to resolve fine scale problem data
+  before simulation. This feature uses adaptive mesh refinement to control the
+  associated data oscillation error. See the new Example 30/30p.
+
+- Switched from Artistic Style (astyle) version 2.05.1 to version 3.1 for code
+  formatting. See the "make style" target.
+
+- Split the fem/fe.?pp files into separate files in the new fem/fe/ directory
+  to simplify and clarify the organization of FiniteElement classes.
+
+- Added support for hr-adaptivity using TMOP-based error estimator.
+
+- Coefficient::SetTime now propagates the new time into internally stored
+  Coefficient objects.
+
+- Added initial support for google-benchmarks in the tests/benchmarks directory.
+  It can be enabled with MFEM_USE_BENCHMARK=YES.
+
+- Added Binder (mybinder.org) configuration files for C++ MFEM Jupyter Notebooks
+  with inline GLVis visualization as well as a new examples/jupyter/ directory
+  with a sample notebook based on Example 1. Implementation based on xeus-cling,
+  github.com/jupyter-xeus/xeus-cling + xeus-glvis, github.com/GLVis/xeus-glvis.
+
+- Added 'double' atomicAdd implementation for previous versions of CUDA.
+
+- Adding lowest order Nedelec and Raviart-Thomas basis functions on wedge
+  shaped elements.
 
 - Added initial support for meshes with pyramidal elements, including several
   pyramidal meshes in the data/ directory and support for the lowest order H1,
   Nedelec, Raviart-Thomas, and L2 basis functions on pyramids.
 
-- Added a simpler interface to access mesh face information, see FaceInformation
-  and GetFaceInformation in the Mesh class.
+- Updated the hypre interface according to changes in hypre-2.22.1. The ADS
+  solver is now fully working on GPUs.
 
-- Gmsh meshes where all elements have zero physical tag (the default Gmsh output
-  format if no physical groups are defined) are now successfully loaded, and
-  elements are reassigned attribute number 1.
+- Tetrahedral meshes no longer need to be reordered to support high order
+  Nedelec basis functions. This will allow future support for Nedelec basis
+  functions on wedges and pyramids which are not amenable to reordering. The
+  ReorientTetMesh method of the Mesh and ParMesh classes has been deprecated.
 
-- Added ParMesh adjacency set (adjset) creation support to the Conduit Mesh
-  Blueprint MFEM wrapper functions in ConduitDataCollection.
+- Gmsh meshes where all elements have zero physical tag (the default Gmsh
+  output format if no physical groups are defined) are now successfully loaded,
+  and elements are reassigned attribute number 1.
 
-Discretization improvements
----------------------------
-- Added general dof transformation to support high order Nedelec basis functions
-  on tetrahedral meshes without reordering. The ReorientTetMesh method of the
-  Mesh and ParMesh classes has been deprecated. See the new DofTransformation
-  class in fem/doftrans.hpp.
-
-- GPU-enabled partial (PA) and element (EA) assembly for discontinuous Galerkin
-  methods on nonconforming AMR meshes.
-
-- Support for arbitrary order Nedelec and Raviart-Thomas elements on wedges.
-
-- Added special Nedelec and Raviart-Thomas basis functions for modeling three
-  dimensional vector fields in 1D and 2D domains, see the new Example 31/31p.
-
-- GridFunctionCoefficient (and the related vector, gradient, divergence, and
-  curl classes) now work properly with LORDiscretization and LORSolver.
-
-- Added PA support for the action of MixedScalarCurlIntegrator in 2D and
-  MixedVectorGradientIntegrator in 2D and 3D, as well as their transposes.
-
-- Coefficient::SetTime now propagates the new time into internally stored
-  Coefficient objects.
-
-- Split the fem/fe.?pp files into separate files in the new fem/fe/ directory to
-  simplify and clarify the organization of FiniteElement classes.
-
-New and updated examples and miniapps
--------------------------------------
-- Added two new miniapps with initial support for automatic differentiation (AD)
-  in the miniapps/autodiff/ directory. Users can select between external library
-  and native implementation during configuration. The support for AD will be
-  extended in future releases of MFEM.
-
-- Added Binder (mybinder.org) configuration files for C++ MFEM Jupyter Notebooks
-  with inline GLVis visualization in the new examples/jupyter/ directory with a
-  sample notebook based on Example 1. The implementation is based on xeus-cling,
-  see github.com/jupyter-xeus/xeus-cling and github.com/GLVis/xeus-glvis.
-
-- Added a new miniapp (Extrapolation) for PDE-based extrapolation of finite
-  element functions from known values in a set of elements to the rest of the
-  computational domain. See miniapps/shifted/extrapolate.cpp.
-
-- Added new miniapp that uses the ParELAG library, its hybrid smoothers, and the
+- Added new miniapps that use the ParELAG library, its hybrid smoothers, and the
   hierarchy of spaces created by the element-based AMG (AMGe) methodology in
   ParELAG to build multigrid solvers for H(curl) and H(div) forms. See the
   miniapps/parelag directory for more details.
 
-- Added a new Example 30/30p demonstrating support for mesh preprocessing to
-  resolve fine scale problem data before simulation. This feature uses adaptive
-  mesh refinement to control the associated data oscillation error.
-
-- Added new Examples 31, 31p and 32p showing anisotropic definite Maxwell
-  serial/parallel solver and parallel eigensolver 1D, 2D, or 3D.
-
-- Updated the mesh-optimizer and pmesh-optimizer miniapps to demonstrate the
-  hr-adaptivity and interface fitting capability.
-
-- The HPC versions of ex1 and ex1p (in miniapps/performance) now support runtime
-  selection of either 2D or 3D meshes.
-
-Integrations, testing and documentation
----------------------------------------
-- Doxygen documentation for all releases is now available at docs.mfem.org.
-
-- The following integrations have updated minimum version requirements:
-  * HIOP >= 0.4.6
-  * HYPRE >= 2.23.0 for HIP support
-  * libCEED >= 0.10
-  * PUMI >= 2.2.6
-  * RAJA >= 0.14.0
-  * Umpire >= 3.0.0
-  see INSTALL for more details.
-
-- Added new optional integrations with ParELAG and CoDiPack (version >= 1.9.3+).
-
-- Added initial support for Google Benchmark (version >= 1.5.6) in the
-  tests/benchmarks directory. It can be enabled with MFEM_USE_BENCHMARK=YES.
-
-- Switched from Artistic Style (astyle) version 2.05.1 to version 3.1 for code
-  formatting. See the "make style" target.
-
-Miscellaneous
--------------
-- Added a simple singleton class, Mpi, as a replacement for MPI_Session. New
-  code should use Mpi::Init() and other Mpi methods instead of MPI_Session.
-
-- Added ParaView visualization of QuadratureFunction fields, through both
-  QuadratureFunction::SaveVTU and ParaViewDataCollection::RegisterQField.
-
 - Fixed several MinGW build issues on Windows.
 
-- Added 'double' atomicAdd implementation for previous versions of CUDA.
-
-- HypreParVector and Vector now support C++ move semantics, and the copy
-  constructor for HypreParVector now copies the local vector data.
-
-- Removed the 'u' flag in the ar command, to update all files in the archive,
+- Remove the 'u' flag in the ar command, to update all files in the archive,
   avoiding file name collisions from different subdirectories.
 
-- Various other simplifications, extensions, and bugfixes in the code.
+- Added initial TMOP-based capabilities for surface fitting and tangential
+  relaxation in the mesh-optimizer and pmesh-optimizer miniapps.
+
+- Added ParMesh Adjaceny Set (adjset) creation support to the Conduit Mesh
+  Blueprint MFEM wrapper functions in ConduitDataCollection.
+
+- `HypreParVector` and `Vector` now support move semantics, and the copy
+  constructor for `HypreParVector` now copies the local vector data.
+
+- The HPC versions of ex1 and ex1p (in miniapps/performance) now support
+  runtime selection of either 2D or 3D meshes.
 
 
 Version 4.3, released on July 29, 2021

CMakeLists.txt

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -10,27 +10,20 @@
 # CONTRIBUTING.md for details.
 
 # The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
-# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
-# Version 3.8 or newer is required for direct CUDA support.
-cmake_minimum_required(VERSION 3.8)
-message(STATUS "CMake version: ${CMAKE_VERSION}")
+cmake_minimum_required(VERSION 3.1)
 set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
   "Path to optional user configuration file.")
 
 # Require C++11 and disable compiler-specific extensions
-set(CMAKE_CXX_STANDARD 11 CACHE STRING "C++ standard to use.")
-set(CMAKE_CXX_STANDARD_REQUIRED ON CACHE BOOL
-  "Force the use of the chosen C++ standard.")
-set(CMAKE_CXX_EXTENSIONS OFF CACHE BOOL "Enable C++ standard extensions.")
+set(CMAKE_CXX_STANDARD 11)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+set(CMAKE_CXX_EXTENSIONS OFF)
 
 # Load user settings before the defaults - this way the defaults will not
 # overwrite the user set options. If the user has not set all options, we still
 # have the defaults.
-include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
-if (USER_CONFIG_LOADED)
-  set(USER_CONFIG_LOADED "LOADED")
-endif()
-message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
+message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
+include("${USER_CONFIG}" OPTIONAL)
 include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
 
 # Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
@@ -58,7 +51,7 @@ project(mfem NONE)
 # Current version of MFEM, see also `makefile`.
 #   mfem_VERSION = (string)
 #   MFEM_VERSION = (int)   [automatically derived from mfem_VERSION]
-set(${PROJECT_NAME}_VERSION 4.6.1)
+set(${PROJECT_NAME}_VERSION 4.3.1)
 
 # Prohibit in-source build
 if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -73,7 +66,8 @@ set(XSDK_ENABLE_C OFF)
 set(XSDK_ENABLE_Fortran OFF)
 
 # Check if we need to enable C or Fortran.
-if (MFEM_USE_CONDUIT OR
+if (CMAKE_VERSION VERSION_LESS 3.2 OR
+    MFEM_USE_CONDUIT OR
     MFEM_USE_SIDRE OR
     MFEM_USE_PETSC)
    # This seems to be needed by:
@@ -83,18 +77,12 @@ if (MFEM_USE_CONDUIT OR
    #  * find_package(PETSc REQUIRED)
    set(XSDK_ENABLE_C ON)
 endif()
-if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
+if (MFEM_USE_STRUMPACK)
   # Just needed to find the MPI_Fortran libraries to link with
   set(XSDK_ENABLE_Fortran ON)
 endif()
-# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
-if ((MFEM_USE_SUNDIALS OR
-     MFEM_USE_STRUMPACK OR
-     MFEM_USE_GINKGO OR
-     MFEM_USE_RAJA OR
-     MFEM_USE_UMPIRE) AND
-    ("${CMAKE_CXX_STANDARD}" LESS "14"))
-  set(CMAKE_CXX_STANDARD 14 CACHE STRING "C++ standard to use." FORCE)
+if (MFEM_USE_GINKGO AND ("${CMAKE_CXX_STANDARD}" LESS "14"))
+  set(CMAKE_CXX_STANDARD 14)
 endif()
 
 # Include xSDK default CMake file.
@@ -105,23 +93,25 @@ enable_language(CXX)
 if (MINGW)
    # MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
    # 25/25p) unless we use '-std=gnu++11':
-   set(CMAKE_CXX_EXTENSIONS ON
-      CACHE BOOL "Enable C++ standard extensions." FORCE)
+   set(CMAKE_CXX_EXTENSIONS ON)
 endif()
 if (MFEM_USE_CUDA)
    if (MFEM_USE_HIP)
       message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
    endif()
+   # MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
+   cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
    # Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
    if (NOT CMAKE_CUDA_HOST_COMPILER)
       set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
    endif()
    enable_language(CUDA)
-   set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
-      "CUDA standard to use.")
-   set(CMAKE_CUDA_STANDARD_REQUIRED ON CACHE BOOL
-      "Force the use of the chosen CUDA standard.")
-   set(CMAKE_CUDA_EXTENSIONS OFF CACHE BOOL "Enable CUDA standard extensions.")
+   set(CMAKE_CUDA_STANDARD 11)
+   if (MFEM_USE_GINKGO)
+     set(CMAKE_CUDA_STANDARD 14)
+   endif()
+   set(CMAKE_CUDA_STANDARD_REQUIRED ON)
+   set(CMAKE_CUDA_EXTENSIONS OFF)
    set(CUDA_FLAGS "--expt-extended-lambda")
    if (CMAKE_VERSION VERSION_LESS 3.18.0)
       set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
@@ -142,10 +132,10 @@ if (MFEM_USE_CUDA)
       set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
       set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
    endif()
-   set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
-   find_package(CUDAToolkit REQUIRED)
+   set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
+       "CUDA flags set for MFEM" FORCE)
    set(CUSPARSE_FOUND TRUE)
-   get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
+   set(CUSPARSE_LIBRARIES "cusparse")
 endif()
 
 if (XSDK_ENABLE_C)
@@ -190,23 +180,6 @@ else()
   set(MFEM_DEBUG OFF)
 endif()
 
-# Shared build on Windows
-if (WIN32 AND BUILD_SHARED_LIBS)
-  # CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
-  set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
-      "Automatically export symbols for shared Windows DLL build")
-  # Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
-  # the build directory, so that the .exe files can find the .dll files at
-  # runtime:
-  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
-  # Note: CMake tests are run from the build-tree sub-directory where the test
-  # is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
-  # work fine.
-  # Not strictly necessary:
-  # set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
-  # set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
-endif()
-
 # AMD HIP
 if (MFEM_USE_HIP)
   if (HIP_ARCH)
@@ -220,35 +193,15 @@ if (MFEM_USE_HIP)
   find_package(HIPSPARSE REQUIRED)
 endif()
 
-# OpenMP
-if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
-  if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
-    message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
-  endif()
-  find_package(OpenMP REQUIRED)
-  set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
-  if(APPLE)
-    # On macOS, the compiler needs additional help to find the <omp.h> header.
-    # See issue #2642 for more information.
-    set(OPENMP_INCLUDE_DIRS ${OpenMP_CXX_INCLUDE_DIRS})
-  endif(APPLE)
-  if (OPENMP_FOUND)
-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
-    if (MFEM_USE_CUDA)
-      set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
-    endif()
-  endif()
-endif()
-
 # MPI -> hypre; PETSc (optional)
 if (MFEM_USE_MPI)
   find_package(MPI REQUIRED)
   set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
   if (MFEM_MPIEXEC)
-    string(REPLACE " " ";" MPIEXEC ${MFEM_MPIEXEC})
+    set(MPIEXEC ${MFEM_MPIEXEC})
   endif()
   if (MFEM_MPIEXEC_NP)
-    string(REPLACE " " ";" MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
+    set(MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
   endif()
   # Parallel MFEM depends on hypre
   find_package(HYPRE REQUIRED)
@@ -305,6 +258,20 @@ if (MFEM_USE_LAPACK)
   find_package(LAPACK REQUIRED)
 endif()
 
+# OpenMP
+if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
+  if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
+    message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
+  endif()
+  find_package(OpenMP REQUIRED)
+  set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
+  if(APPLE)
+    # On macOS, the compiler needs additional help to find the <omp.h> header.
+    # See issue #2642 for more information.
+    include_directories(${OpenMP_CXX_INCLUDE_DIRS})
+  endif(APPLE)
+endif()
+
 # SuiteSparse (before SUNDIALS which may depend on KLU)
 if (MFEM_USE_SUITESPARSE)
   find_package(SuiteSparse REQUIRED
@@ -320,12 +287,14 @@ if (MFEM_USE_SUNDIALS)
   if (MFEM_USE_CUDA)
     list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
   endif()
-  if (MFEM_USE_HIP)
-    list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
-  endif()
   find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
 endif()
 
+# Mesquite
+if (MFEM_USE_MESQUITE)
+  find_package(Mesquite REQUIRED)
+endif()
+
 # SuperLU_DIST can only be enabled in parallel
 if (MFEM_USE_SUPERLU)
   if (MFEM_USE_MPI)
@@ -339,7 +308,6 @@ endif()
 if (MFEM_USE_MUMPS)
   if (MFEM_USE_MPI)
     find_package(MUMPS REQUIRED mumps_common pord)
-    set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
   else()
     message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
   endif()
@@ -411,21 +379,6 @@ if (MFEM_USE_PUMI)
   endif()
 endif()
 
-# Moonolith
-if(MFEM_USE_MOONOLITH)
-  find_package(ParMoonolith REQUIRED)
-  if(ParMoonolith_FOUND)
-    get_target_property(
-      MOONOLITH_INCLUDE_DIRS ParMoonolith::par_moonolith
-      INTERFACE_INCLUDE_DIRECTORIES)
-    set(MOONOLITH_FOUND TRUE)
-    set(MOONOLITH_LIBRARIES ParMoonolith::par_moonolith)
-    message(
-      STATUS
-      "MOONOLITH_LIBRARIES=${MOONOLITH_LIBRARIES}, MOONOLITH_INCLUDE_DIRS=${MOONOLITH_INCLUDE_DIRS}")
-  endif()
-endif()
-
 # HiOp optimizer
 if (MFEM_USE_HIOP)
   find_package(HIOP REQUIRED)
@@ -463,38 +416,22 @@ if (MFEM_USE_CALIPER)
   find_package(Caliper REQUIRED)
 endif()
 
-# Algoim
-if (MFEM_USE_ALGOIM)
-  find_package(Algoim REQUIRED)
-endif()
-
 # ADIOS2 for parallel I/O
 if (MFEM_USE_ADIOS2)
    find_package(ADIOS2 REQUIRED)
 endif()
 
-# MKL CPardiso
 if (MFEM_USE_MKL_CPARDISO)
   if (MFEM_USE_MPI)
    find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
   endif()
 endif()
 
-# MKL Pardiso
-if (MFEM_USE_MKL_PARDISO)
-   find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
-endif()
-
 # PARELAG
 if (MFEM_USE_PARELAG)
    find_package(PARELAG REQUIRED)
 endif()
 
-# Enzyme
-if (MFEM_USE_ENZYME)
-   find_package(ENZYME REQUIRED)
-endif()
-
 # MFEM_TIMER_TYPE
 if (NOT DEFINED MFEM_TIMER_TYPE)
   if (APPLE)
@@ -513,29 +450,16 @@ if (NOT DEFINED MFEM_TIMER_TYPE)
   endif()
 endif()
 
-# Without this, CMake 3.21.1 (and 3.20.2) run into CMake Errors like the following:
-# CMake Error at config/cmake/modules/MfemCmakeUtilities.cmake:60 (add_library):
-#   Target "mfem" links to target "Threads::Threads" but the target was not
-#   found.  Perhaps a find_package() call is missing for an IMPORTED target, or
-#   an ALIAS target is missing?
-# Call Stack (most recent call first):
-#   CMakeLists.txt:474 (mfem_add_library)
-#
-# NOTE: We need to figure out which TPL library adds the dependency on
-#       "Threads::Threads" and call the next line only when that TPL library is
-#       enabled.  -V. Dobrev
-find_package(Threads REQUIRED)
-
 # List all possible libraries in order of dependencies.
 # [METIS < SuiteSparse]:
 #    With newer versions of SuiteSparse which include METIS header using 64-bit
 #    integers, the METIS header (with 32-bit indices, as used by mfem) needs to
 #    be before SuiteSparse.
-set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
-    SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
+set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS
+    PETSC SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
     NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
-    ADIOS2 CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
-    BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
+    ADIOS2 CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
+    MPI_CXX HIP HIPSPARSE)
 
 # Add all *_FOUND libraries in the variable TPL_LIBRARIES.
 set(TPL_LIBRARIES "")
@@ -547,13 +471,19 @@ foreach(TPL IN LISTS MFEM_TPLS)
     list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
   endif()
 endforeach(TPL)
-list(REVERSE TPL_LIBRARIES)
 list(REMOVE_DUPLICATES TPL_LIBRARIES)
-list(REVERSE TPL_LIBRARIES)
 list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
 # message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
+include_directories(${TPL_INCLUDE_DIRS})
+
+if (OPENMP_FOUND)
+  message(STATUS "MFEM: using package OpenMP")
+  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
+  if (MFEM_USE_CUDA)
+    set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
+  endif()
+endif()
 
-message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
 message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
 message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
 message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
@@ -566,11 +496,6 @@ message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
 set(SOURCES "")
 set(HEADERS "")
 set(MFEM_SOURCE_DIRS general linalg mesh fem)
-
-if(MFEM_USE_MOONOLITH)
-  set(MFEM_SOURCE_DIRS ${MFEM_SOURCE_DIRS} fem/moonolith)
-endif()
-
 foreach(DIR IN LISTS MFEM_SOURCE_DIRS)
   add_subdirectory(${DIR})
 endforeach()
@@ -601,27 +526,6 @@ target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
 if (MINGW)
   target_link_libraries(mfem PRIVATE ws2_32)
 endif()
-if (MSVC)
-  target_compile_options(mfem PUBLIC "/wd4819")
-endif()
-message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
-target_include_directories(mfem
-  PUBLIC
-    $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
-    $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
-    # The INSTALL_INTERFACE is handled below
-    ${TPL_INCLUDE_DIRS})
-if (MFEM_USE_MPI)
-  if (MPI_CXX_COMPILE_FLAGS)
-    separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
-      "${MPI_CXX_COMPILE_FLAGS}")
-    target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
-  endif()
-  if (MPI_CXX_LINK_FLAGS)
-    target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
-  endif()
-endif()
-
 set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
 set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
 
@@ -633,7 +537,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
 endif()
 
 # Generate configuration file in the build directory: config/_config.hpp.
-set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
 configure_file(
   "${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
   "${PROJECT_BINARY_DIR}/config/_config.hpp")
@@ -644,34 +547,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
   foreach(Header mfem.hpp mfem-performance.hpp)
     message(STATUS
       "Writing substitute header --> \"${Header}\"")
-    file(WRITE "${PROJECT_BINARY_DIR}/${Header}.tmp"
+    file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
 "// Auto-generated file.
 #define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
 #include \"${PROJECT_SOURCE_DIR}/${Header}\"
 ")
-
-    execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different 
-      "${PROJECT_BINARY_DIR}/${Header}.tmp"
-      "${PROJECT_BINARY_DIR}/${Header}"
-    )
-    execute_process(COMMAND ${CMAKE_COMMAND} -E remove
-      "${PROJECT_BINARY_DIR}/${Header}.tmp"
-    )
-
     # This version will be installed in the top include directory:
-    file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
+    file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
 "// Auto-generated file.
 #include \"mfem/${Header}\"
 ")
-
-    execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different 
-      "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
-      "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
-    )
-    execute_process(COMMAND ${CMAKE_COMMAND} -E remove
-      "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
-    )
-
   endforeach()
 endif()
 
@@ -763,18 +648,12 @@ add_subdirectory(doc)
 message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
 set(INSTALL_INCLUDE_DIR include
   CACHE PATH "Relative path for installing header files.")
-set(INSTALL_BIN_DIR bin
-  CACHE PATH "Relative path for installing the binaries.")
 set(INSTALL_LIB_DIR lib
   CACHE PATH "Relative path for installing the library.")
 # other options: "share/mfem/cmake", "lib/mfem/cmake"
 set(INSTALL_CMAKE_DIR lib/cmake/mfem
   CACHE PATH "Relative path for installing cmake config files.")
 
-target_include_directories(mfem BEFORE
-  PUBLIC
-    $<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
-
 # The 'install' target will not depend on 'all'.
 # set(CMAKE_SKIP_INSTALL_ALL_DEPENDENCY TRUE)
 
@@ -783,9 +662,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
 # Install the library
 install(TARGETS ${PROJECT_NAME}
   EXPORT ${PROJECT_NAME_UC}Targets
-  RUNTIME DESTINATION ${INSTALL_BIN_DIR}
-  LIBRARY DESTINATION ${INSTALL_LIB_DIR}
-  ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
+  DESTINATION ${INSTALL_LIB_DIR})
 
 # Install the master headers
 foreach(Header mfem.hpp mfem-performance.hpp)
@@ -810,7 +687,7 @@ endif()
 if (MFEM_USE_CEED)
   install(DIRECTORY ${MFEM_SOURCE_DIRS}
     DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
-    FILES_MATCHING PATTERN "fem/ceed/integrators/*/*.h")
+    FILES_MATCHING PATTERN "fem/ceed/*.h")
 endif()
 
 # Install ${HEADERS}
@@ -823,8 +700,10 @@ endif()
 
 # Install the configuration header files
 install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
-  ${PROJECT_SOURCE_DIR}/config/config.hpp
-  ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
+  DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
+  RENAME config.hpp)
+
+install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
   DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
 
 # Package the whole thing up nicely
@@ -839,8 +718,14 @@ export(TARGETS ${PROJECT_NAME}
 # TODO: How do we register the install-tree? Replacing the build-tree?
 export(PACKAGE ${PROJECT_NAME})
 
+# Extract the include directories required to use MFEM
+get_target_property(MFEM_TPL_INCLUDE_DIRS mfem INCLUDE_DIRECTORIES)
+if (NOT MFEM_TPL_INCLUDE_DIRS)
+  set(MFEM_TPL_INCLUDE_DIRS "")
+endif()
+
 # This is the build-tree version
-set(INCLUDE_INSTALL_DIRS ${PROJECT_BINARY_DIR} ${TPL_INCLUDE_DIRS})
+set(INCLUDE_INSTALL_DIRS ${PROJECT_BINARY_DIR} ${MFEM_TPL_INCLUDE_DIRS})
 set(LIB_INSTALL_DIR ${PROJECT_BINARY_DIR})
 configure_package_config_file(config/cmake/MFEMConfig.cmake.in
   ${CMAKE_CURRENT_BINARY_DIR}/MFEMConfig.cmake
@@ -848,7 +733,7 @@ configure_package_config_file(config/cmake/MFEMConfig.cmake.in
   PATH_VARS INCLUDE_INSTALL_DIRS LIB_INSTALL_DIR)
 
 # This is the version that will be installed
-set(INCLUDE_INSTALL_DIRS ${INSTALL_INCLUDE_DIR}  ${TPL_INCLUDE_DIRS})
+set(INCLUDE_INSTALL_DIRS ${INSTALL_INCLUDE_DIR}  ${MFEM_TPL_INCLUDE_DIRS})
 set(LIB_INSTALL_DIR ${INSTALL_LIB_DIR})
 configure_package_config_file(config/cmake/MFEMConfig.cmake.in
   ${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/MFEMConfig.cmake

CONTRIBUTING.md

@@ -8,7 +8,7 @@
 <a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
 <a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
 <a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
-<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
+<a href="https://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
 </p>
 
 
@@ -102,9 +102,7 @@ The MFEM source code has the following structure:
   .
   ├── config
   │   ├── cmake
-  │   ├── docker
-  │   ├── githooks
-  │   └── vcpkg
+  │   └── githooks
   ├── data
   ├── doc
   ├── examples
@@ -113,7 +111,6 @@ The MFEM source code has the following structure:
   │   ├── ginkgo
   │   ├── hiop
   │   ├── jupyter
-  │   ├── moonolith
   │   ├── petsc
   │   ├── pumi
   │   ├── sundials
@@ -121,39 +118,29 @@ The MFEM source code has the following structure:
   ├── fem
   │   ├── ceed
   │   ├── fe
-  │   ├── integ
-  │   ├── lor
-  │   ├── moonolith
   │   ├── qinterp
   │   └── tmop
   ├── general
   ├── linalg
   │   └── simd
   ├── mesh
-  │   └── submesh
   ├── miniapps
   │   ├── adjoint
   │   ├── autodiff
   │   ├── common
-  │   ├── dpg
   │   ├── electromagnetics
   │   ├── gslib
-  │   ├── hdiv-linear-solver
-  │   ├── hooke
   │   ├── meshing
   │   ├── mtop
-  │   ├── multidomain
   │   ├── navier
   │   ├── nurbs
   │   ├── parelag
   │   ├── performance
   │   ├── shifted
   │   ├── solvers
-  │   ├── spde
   │   ├── tools
   │   └── toys
   └── tests
-      ├── benchmarks
       ├── convergence
       ├── gitlab
       ├── mem_manager
@@ -169,24 +156,24 @@ classes implementing the finite element, mesh and linear algebra concepts
 respectively.
 
 - The main mesh classes are:
-  + [`Mesh`](https://docs.mfem.org/html/classmfem_1_1Mesh.html)
-  + [`NCMesh`](https://docs.mfem.org/html/classmfem_1_1NCMesh.html)
-  + [`Element`](https://docs.mfem.org/html/classmfem_1_1Element.html)
-  + [`ElementTransformation`](https://docs.mfem.org/html/classmfem_1_1ElementTransformation.html)
+  + [`Mesh`](https://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
+  + [`NCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
+  + [`Element`](https://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
+  + [`ElementTransformation`](https://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
 
 - The main finite element classes are:
-  + [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
-  + [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
-  + [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
-  + [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
-  + [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
-  + [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
+  + [`FiniteElement`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
+  + [`FiniteElementCollection`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
+  + [`FiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
+  + [`GridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
+  + [`BilinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
+  + [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
 
 - The main linear algebra classes and sources are
-  + [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
-  + [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
-  + [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
-  + Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
+  + [`Operator`](https://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
+  + [`Vector`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
+  + [`DenseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
+  + Sparse [smoothers](https://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
 
 #### Parallel implementation
 
@@ -196,13 +183,13 @@ shared geometric entities between different tasks. The parallel source files
 have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
 
 - The main parallel classes are
-  + [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
-  + [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
-  + [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
-  + [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
-  + [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
-  + [`HypreParMatrix`](https://docs.mfem.org/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://docs.mfem.org/html/classmfem_1_1HypreParVector.html)
-  + [`HypreSolver`](https://docs.mfem.org/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://docs.mfem.org/html/hypre_8hpp.html)
+  + [`ParMesh`](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
+  + [`ParNCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
+  + [`ParFiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
+  + [`ParGridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
+  + [`ParBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
+  + [`HypreParMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
+  + [`HypreSolver`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://mfem.github.io/doxygen/html/hypre_8hpp.html)
 
 #### GPU and general device support
 
@@ -211,10 +198,10 @@ backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
 device/host memory manager.
 
 - The main device-relevant classes and sources are:
-  + [`Device`](https://docs.mfem.org/html/device_8hpp.html)
-  + [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
-  + the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
-  + the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
+  + [`Device`](https://mfem.github.io/doxygen/html/device_8hpp.html)
+  + [`MemoryManager`](https://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
+  + the [`MFEM_FORALL`](https://mfem.github.io/doxygen/html/forall_8hpp.html) macro
+  + the [`cuda.hpp`](https://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](https://mfem.github.io/doxygen/html/occa_8hpp.html) files
 
 #### Utilities, building and documentation
 - The `general/` directory contains C++ classes that serve as utilities for
@@ -222,7 +209,8 @@ device/host memory manager.
 - The `config/` directory contains build-related files, both for the plain
   Makefile and the CMake build options.
 - The `doc/` directory contains configuration for the Doxygen code documentation
-  that can either be built locally or browsed online at https://docs.mfem.org.
+  that can either be built locally or browsed online at
+  https://mfem.github.io/doxygen/html/index.html.
 
 #### Examples and tests
 - `examples` and `miniapps` respectively gather simple and more fully-featured
@@ -346,9 +334,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
 - Code specifics
   - All new public, protected, and private classes, methods, data members, and
     functions have Doxygen-style documentation in source comments.
-  - Math formulas can be included in the Doxygen comments either with standard
-    LaTeX (`$..$` and `$$..$$`) for portions that need detailed explanation, or with
-    [Unicode](https://www.unicodeit.net/) or plain text when short or readable description is preferable.
   - In addition to arguments and functionality, documentation should include the
     current limitations of the code, any background information that is
     implicitly assumed in the implementation, and the ownership and lifetime
@@ -445,10 +430,10 @@ The Pull Request (PR) approval process in MFEM is similar to the approval of pap
 
 The current list of MFEM editors is:
 
-- [@v-dobrev](https://github.com/v-dobrev) (Veselin Dobrev)
-- [@tzanio](https://github.com/tzanio) (Tzanio Kolev)
-- [@pazner](https://github.com/pazner) (Will Pazner)
-- [@mlstowell](https://github.com/mlstowell) (Mark Stowell)
+- @v-dobrev (Veselin Dobrev)
+- @tzanio (Tzanio Kolev)
+- @pazner (Will Pazner)
+- @mlstowell (Mark Stowell)
 
 **The responsibilities of the editors are:**
 
@@ -654,7 +639,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
   ```
 - [ ] Create the release tarball and push to `mfem/releases`.
 - [ ] Recreate the `next` branch as described in previous section.
-- [ ] Update and push documentation to `mfem/doxygen`. Update the `README.md` file and the `html` link in the `mfem/doxygen` repo.
+- [ ] Update and push documentation  to `mfem/doxygen`.
 - [ ] Update URL shortlinks:
     - [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
     - [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.

INSTALL

@@ -7,10 +7,6 @@
 
                                https://mfem.org
 
-This file provides a detailed description of how to build and install the MFEM
-library. For a simple build, see the step-by-step instructions on the website
-at https://mfem.org/building.
-
 The MFEM library has a serial and an MPI-based parallel version, which largely
 share the same code base. The only prerequisite for building the serial version
 of MFEM is a (modern) C++ compiler, such as g++. The parallel version of MFEM
@@ -20,17 +16,13 @@ requires an MPI C++ compiler, as well as the following external libraries:
   https://github.com/hypre-space/hypre
 
 - METIS (a family of multilevel partitioning algorithms)
-  https://github.com/mfem/tpls
-
-  Note: We recommend our mirror of metis-4.0.3/5.1.0 above because the METIS
-  webpage, http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, is often down
-  and we don't support yet the new repo https://github.com/KarypisLab/METIS.
+  http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
 
 The hypre dependency can be downloaded as a tarball from GitHub or from the
-project webpage https://www.llnl.gov/casc/hypre. For example, the 2.24.0 release
+project webpage https://www.llnl.gov/casc/hypre. For example, the 2.20.0 release
 of hypre is available at
 
-   https://github.com/hypre-space/hypre/archive/v2.24.0.tar.gz
+   https://github.com/hypre-space/hypre/archive/v2.20.0.tar.gz
 
 The METIS dependency can be disabled but that is not generally recommended, see
 the option MFEM_USE_METIS.
@@ -68,6 +60,7 @@ following package managers:
 - OpenHPC, http://openhpc.community
 - Conda-forge, https://conda-forge.org (pre-built binaries linked with
   OpenMPI/MPICH, hypre, and METIS)
+- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
 
 We also recommend downloading and building the MFEM-based GLVis visualization
 tool which can be used to visualize the meshes and solution in MFEM's examples
@@ -337,6 +330,10 @@ MFEM_USE_SUNDIALS = YES/NO
    library. When enabled, this option uses the SUNDIALS_* library options,
    see below.
 
+MFEM_USE_MESQUITE = YES/NO
+   Enable MFEM functionality based on the Mesquite library. When enabled, this
+   option uses the MESQUITE_* library options, see below.
+
 MFEM_USE_SUITESPARSE = YES/NO
    Enable MFEM functionality based on the SuiteSparse library. Currently, this
    option adds the classes UMFPackSolver and KLUSolver (both sparse serial
@@ -475,14 +472,6 @@ MFEM_USE_CODIPACK = YES/NO
   Enable automatic differentiation using the CoDiPack library.
   www.scicomp.uni-kl.de/codi/
 
-MFEM_USE_ALGOIM = YES/NO
-  Enable the usage of Algoim - a collection of high-order accurate numerical
-  methods and C++ algorithms for working with implicitly-defined geometry and
-  level set methods. The Algoim library requires the Blitz++ library. The MFEM
-  provides interface to Algoim v1. Thus, to check out the specific state use:
-  git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a
-  https://algoim.github.io
-
 MFEM_USE_ADFORWARD = YES/NO
   Enable forward mode for AD packages. This option is valid
   only if the AD package supports two modes (backward/forward).
@@ -532,16 +521,6 @@ MFEM_USE_MKL_CPARDISO = YES/NO
    MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
    OpenMP capabilities are disabled at link time.
 
-MFEM_USE_MOONOLITH = YES/NO
-   Enables the ParMoonolith interface for parallel non-conforming, non-matching,
-   variational, volumetric mesh information transfer. It requires the variable
-   MOONOLITH_DIR=<path to installation> to be defined in the environment in
-   order to be used with the Makefile. Makefile users are also required to
-   install moonolith using the command `make install_all`, see
-   https://bitbucket.org/zulianp/par_moonolith for details.
-   Although Moonolith is an MPI-based library, both serial (MFEM_USE_MPI=NO) and
-   parallel (MFEM_USE_MPI=YES) versions of MFEM are supported.
-
 MFEM_USE_CALIPER = YES/NO
    Enables the interface to Caliper. Caliper is a library to integrate
    performance profiling capabilities into applications. To use Caliper,
@@ -554,7 +533,7 @@ MFEM_USE_FMS = YES/NO
    Enables support for the FMS library which consists of the DataCollection
    sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
    fem/fmsdatacollection.hpp. In addition, this option enables in-memory
-   conversion routines between FMS's FmsDataCollection structure and MFEM's
+   convetion routines between FMS's FmsDataCollection structure and MFEM's
    DataCollection class, see the header file fem/fmsconvert.hpp.
 
 MFEM_USE_PARELAG = YES/NO
@@ -562,14 +541,6 @@ MFEM_USE_PARELAG = YES/NO
    use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
    currently only concerns the miniapps.
 
-MFEM_USE_ENZYME = YES/NO
-   Enables automatic differentiation support through the LLVM plugin Enzyme.
-   This requires the compiler to be set to clang (>=14.0.0). We also advise to
-   use the link time optimization (LTO) plugin, to enable functions that you
-   define over multiple files (compilation units) and want to be differentiated
-   automatically, to work. This requires to also use LLVM/LLD for linking.
-   Recommended options are in config/defaults.mk.
-
 MFEM_BUILD_TAG = (any value)
    An optional tag to characterize the build. Exported to config/config.mk.
    Can be used to identify the MFEM build from other makefiles.
@@ -596,12 +567,11 @@ The specific libraries and their options are:
   Options: HYPRE_OPT, HYPRE_LIB.
   Versions: HYPRE >= 2.10.0b  (HYPRE built without CUDA)
             HYPRE >= 2.20.0   (HYPRE built with '--enable-mixedint')
-            HYPRE >= 2.22.1   (HYPRE built with CUDA)
-            HYPRE >= 2.23.0   (HYPRE built with HIP)
+            HYPRE >= 2.22.1   (HYPRE built with CUDA or HIP)
 
 - METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
   MFEM_USE_METIS_5 = YES (default is to use METIS 4).
-  URL: https://github.com/mfem/tpls (MFEM mirror, see above)
+  URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
   Options: METIS_OPT, METIS_LIB.
   Versions: METIS 4.0.3 or 5.1.0.
 
@@ -628,13 +598,14 @@ The specific libraries and their options are:
   both MPI and hypre.
   If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
   for CUDA.
-  If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
-  for HIP.
-  URL: http://computing.llnl.gov/projects/sundials/sundials-software
+  URL: http://computation.llnl.gov/projects/sundials/sundials-software
   Options: SUNDIALS_OPT, SUNDIALS_LIB.
-  Versions: SUNDIALS >= 5.0.0,
-            SUNDIALS >= 5.4.0 for CUDA support, and
-            SUNDIALS >= 5.7.0 for HIP support.
+  Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
+
+- Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
+  URL: http://trilinos.org/oldsite/packages/mesquite
+  Options: MESQUITE_OPT, MESQUITE_LIB.
+  The Mesquite support is deprecated and will be removed in the future.
 
 - SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
   URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
@@ -659,7 +630,8 @@ The specific libraries and their options are:
   requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
   includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
   and PT-Scotch are optional dependencies.
-  The support for STRUMPACK was added in MFEM v3.3.2.
+  The support for STRUMPACK was added in MFEM v3.3.2 and it requires STRUMPACK
+  2.0.0 or later.
   URL: http://portal.nersc.gov/project/sparse/strumpack
   Options: STRUMPACK_OPT, STRUMPACK_LIB.
   Versions: STRUMPACK >= 3.0.0.
@@ -698,15 +670,12 @@ The specific libraries and their options are:
   PETSc has been cloned on the same level as mfem and hypre:
     ./configure --download-fblaslapack=yes --download-scalapack=yes \
                 --download-mumps=yes --download-suitesparse=yes \
-                --with-hypre-dir=../hypre/src/hypre \
+                --with-hypre-dir=../hypre-2.10.0b/src/hypre \
                 --with-shared-libraries=0
-  When building PETSc with HIP, one may need to add a flag like -std=c2x to
-  CFLAGS to allow proper parsing of the hipsparse header under C.
   URL: https://www.mcs.anl.gov/petsc
   Options: PETSC_OPT, PETSC_LIB.
-  Versions: PETSc >= 3.8.0   (PETSc build without CUDA/HIP)
+  Versions: PETSc >= 3.8.0   (PETSc build without CUDA)
             PETSc >= 3.15.0  (PETSc built with CUDA)
-            PETSc >= 3.19.0  (PETSc built with HIP, older versions may work too)
 
 - SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
   uses some of the PETSc options when compiled.
@@ -744,7 +713,7 @@ The specific libraries and their options are:
   Options: HIOP_OPT, HIOP_LIB.
   Versions: HIOP >= 0.4.6.
 
-- CoDiPack (optional), used with MFEM_USE_CODIPACK = YES
+- CoDiPack (optiobal), used with MFEM_USE_CODIPACK = YES
   URL: https://www.scicomp.uni-kl.de/codi/
   Options: CODIPACK_OPT
   Versions: 1.9.3
@@ -759,20 +728,6 @@ The specific libraries and their options are:
   Options: GSLIB_OPT, GSLIB_LIB.
   Versions: GSLIB >= 1.0.7.
 
-- ALGOIM (optional), used when MFEM_USE_ALGOIM=YES. The library provides only
-  headers so it just needs to be downloaded at the same level as MFEM. Download
-  the specific version we use as:
-  "git clone https://github.com/algoim/algoim.git;
-   git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a"
-  ALGOIM depends on BLITZ and the library must be built prior to the MFEM build.
-  Download v1.0.2, untar it at the same level as MFEM and create a symbolic link:
-  "ln -s blitz-1.0.2 blitz".
-  Build Blitz using CMake as:
-  "cmake . -DCMAKE_INSTALL_PREFIX=.; make lib; make install"
-  URL: https://github.com/blitzpp/blitz/archive/refs/tags/1.0.2.tar.gz
-  Options: BLITZ_OPT, BLITZ_LIB
-  Versions: BLITZ = 1.0.2
-
 - MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
   URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
   Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
@@ -796,18 +751,13 @@ The specific libraries and their options are:
   URL: https://github.com/CEED/libCEED
        https://ceed.exascaleproject.org/libceed
   Options: CEED_DIR, CEED_OPT, CEED_LIB.
-  Versions: libCEED >= 0.12.
+  Versions: libCEED >= 0.8.
 
 - RAJA (optional), used when MFEM_USE_RAJA = YES.
-  Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
+  Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
   URL: https://github.com/LLNL/RAJA
   Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
-  Versions: RAJA >= 2022.10.3.
-
-- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
-  URL: https://bitbucket.org/zulianp/par_moonolith
-  Options: MOONOLITH_DIR
-  Versions: MOONOLITH >= 1.1.0.
+  Versions: RAJA >= 0.14.0.
 
 - Caliper (optional), used when MFEM_USE_CALIPER = YES.
   URL: https://github.com/LLNL/Caliper
@@ -849,12 +799,6 @@ The specific libraries and their options are:
   URL: https://github.com/LLNL/parelag
   Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
 
-- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
-  URL: https://github.com/EnzymeAD/Enzyme
-  Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
-  Versions: Enzyme >= v0.0.33.
-
-
 Building with CMake
 ===================
 The MFEM build system consists of two steps: configuration and compilation.
@@ -966,6 +910,7 @@ MFEM_USE_LEGACY_OPENMP
 MFEM_USE_OPENMP
 MFEM_USE_MEMALLOC
 MFEM_TIMER_TYPE - Set automatically, can be overwritten.
+MFEM_USE_MESQUITE
 MFEM_USE_SUITESPARSE
 MFEM_USE_SUPERLU
 MFEM_USE_MUMPS
@@ -987,12 +932,10 @@ MFEM_USE_CEED
 MFEM_USE_RAJA
 MFEM_USE_UMPIRE
 MFEM_USE_SIDRE
-MFEM_USE_MOONOLITH
 MFEM_USE_CALIPER
 MFEM_USE_FMS
 MFEM_USE_BENCHMARK
 MFEM_USE_PARELAG
-MFEM_USE_ENZYME
 
 The following options are CMake specific:
 
@@ -1030,6 +973,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
  - HYPRE
  - METIS - The option MFEM_USE_METIS_5 is auto-detected.
  - ParMETIS
+ - MESQUITE
  - SuiteSparse
  - SuperLUDist, STRUMPACK
  - Ginkgo
@@ -1046,12 +990,10 @@ The CMake build system adds auto-detection for the following packages/libraries:
  - RAJA
  - UMPIRE
  - AXOM - Used when MFEM_USE_SIDRE is enabled
- - MOONOLITH
  - CALIPER
  - FMS
  - BENCHMARK
  - ParELAG
- - Enzyme
 
 The following built-in CMake packages are also used:
 

LICENSE

@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC
+Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

README

@@ -7,24 +7,21 @@
 
                                https://mfem.org
 
-[MFEM](https://mfem.org) is a modular parallel C++ library for finite element
-methods. Its goal is to enable high-performance scalable finite element
-discretization research and application development on a wide variety of
-platforms, ranging from laptops to supercomputers.
+MFEM is a modular parallel C++ library for finite element methods. Its goal is
+to enable high-performance scalable finite element discretization research and
+application development on a wide variety of platforms, ranging from laptops to
+supercomputers.
 
 We welcome contributions and feedback from the community. Please see the file
-[CONTRIBUTING.md](CONTRIBUTING.md) for additional details about our development
-process.
+CONTRIBUTING.md for additional details about our development process.
 
-* For building instructions, see the file [INSTALL](INSTALL), or type "make help".
+* For building instructions, see the file INSTALL, or type "make help".
 
-* Copyright and licensing information can be found in files [LICENSE](LICENSE) and [NOTICE](NOTICE).
+* Copyright and licensing information can be found in files LICENSE and NOTICE.
 
 * The best starting point for new users interested in MFEM's features is to
   review the examples and miniapps at https://mfem.org/examples.
 
-* Instructions for learning with Docker are in [config/docker](config/docker).
-
 Conceptually, MFEM can be viewed as a finite element toolbox that provides the
 building blocks for developing finite element algorithms in a manner similar to
 that of MATLAB for linear algebra methods. In particular, MFEM provides support
@@ -61,16 +58,12 @@ solvers from the hypre library. Comprehensive support for other external
 packages, e.g. PETSc, SUNDIALS and libCEED is also included, giving access to
 additional linear and nonlinear solvers, preconditioners, time integrators, etc.
 
-For examples of using MFEM, see the [examples/](examples) and [miniapps/](miniapps)
-directories, as well as the OpenGL visualization tool GLVis which is available
-at https://glvis.org.
-
-## License
+For examples of using MFEM, see the examples/ and miniapps/ directories, as well
+as the OpenGL visualization tool GLVis which is available at https://glvis.org.
 
 MFEM is distributed under the terms of the BSD-3 license. All new contributions
-must be made under this license. See [LICENSE](LICENSE) and [NOTICE](NOTICE) for
-details.
+must be made under this license. See LICENSE and NOTICE for details.
 
-SPDX-License-Identifier: BSD-3-Clause <br>
-LLNL Release Number: LLNL-CODE-806117 <br>
+SPDX-License-Identifier: BSD-3-Clause
+LLNL Release Number: LLNL-CODE-806117
 DOI: 10.11578/dc.20171025.1248

config/CMakeLists.txt

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/XSDKDefaults.cmake

@@ -212,6 +212,10 @@ IF (DEFINED TPL_ENABLE_SUNDIALS)
   SET(MFEM_USE_SUNDIALS ${TPL_ENABLE_SUNDIALS} CACHE BOOL "Enable SUNDIALS usage" FORCE)
 ENDIF()
 
+IF (DEFINED TPL_ENABLE_MESQUITE)
+  SET(MFEM_USE_MESQUITE ${TPL_ENABLE_MESQUITE} CACHE BOOL "Enable MESQUITE usage" FORCE)
+ENDIF()
+
 IF (DEFINED TPL_ENABLE_SUITESPARSE)
   SET(MFEM_USE_SUITESPARSE ${TPL_ENABLE_SUITESPARSE} CACHE BOOL "Enable SuiteSparse usage" FORCE)
 ENDIF()

config/cmake/MFEMConfig.cmake.in

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -29,6 +29,7 @@ set(MFEM_USE_LEGACY_OPENMP @MFEM_USE_LEGACY_OPENMP@)
 set(MFEM_USE_MEMALLOC @MFEM_USE_MEMALLOC@)
 set(MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@)
 set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
+set(MFEM_USE_MESQUITE @MFEM_USE_MESQUITE@)
 set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
 set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
 set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
@@ -53,16 +54,11 @@ set(MFEM_USE_CEED @MFEM_USE_CEED@)
 set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
 set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
 set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
-set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
 set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
-set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
-set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
 set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
 set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
-set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
 set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
 set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
-set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
 
 set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
 set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")

config/cmake/config.hpp.in

@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -39,9 +39,6 @@
 // Description of the git commit used to build MFEM.
 #cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
 
-// Enable shared library build of MFEM.
-#cmakedefine MFEM_SHARED_BUILD
-
 // Build the parallel MFEM library.
 // Requires an MPI compiler, and the libraries HYPRE and METIS.
 #cmakedefine MFEM_USE_MPI
@@ -80,102 +77,94 @@
 // Internal MFEM option: enable group/batch allocation for some small objects.
 #cmakedefine MFEM_USE_MEMALLOC
 
-// Which library functions to use in class StopWatch for measuring time.
-// For a list of the available options, see INSTALL.
-// If not defined, an option is selected automatically.
-#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
-
-// Enable MFEM functionality based on the SUNDIALS libraries.
-#cmakedefine MFEM_USE_SUNDIALS
+// Enable MFEM functionality based on the Mesquite library.
+#cmakedefine MFEM_USE_MESQUITE
 
 // Enable MFEM functionality based on the SuiteSparse library.
 #cmakedefine MFEM_USE_SUITESPARSE
 
 // Enable MFEM functionality based on the SuperLU_DIST library.
 #cmakedefine MFEM_USE_SUPERLU
-#cmakedefine MFEM_USE_SUPERLU5
 
 // Enable MFEM functionality based on the MUMPS library.
 #cmakedefine MFEM_USE_MUMPS
-#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
 
 // Enable MFEM functionality based on the STRUMPACK library.
 #cmakedefine MFEM_USE_STRUMPACK
 
-// Enable functionality based on the Ginkgo library.
+// Enable functionality based on the Ginkgo library
 #cmakedefine MFEM_USE_GINKGO
 
-// Enable MFEM functionality based on the AmgX library.
+// Enable MFEM functionality based on the AmgX library
 #cmakedefine MFEM_USE_AMGX
 
-// Enable secure socket streams based on the GNUTLS library.
+// Enable MFEM functionality based on the GnuTLS library
 #cmakedefine MFEM_USE_GNUTLS
 
-// Enable Sidre support.
-#cmakedefine MFEM_USE_SIDRE
-
-// Enable the use of SIMD in the high performance templated classes.
-#cmakedefine MFEM_USE_SIMD
-
-// Enable FMS support.
-#cmakedefine MFEM_USE_FMS
-
-// Enable Conduit support.
-#cmakedefine MFEM_USE_CONDUIT
-
-// Enable functionality based on the NetCDF library (reading CUBIT files).
-#cmakedefine MFEM_USE_NETCDF
-
-// Enable functionality based on the PETSc library.
-#cmakedefine MFEM_USE_PETSC
-
-// Enable functionality based on the SLEPc library.
-#cmakedefine MFEM_USE_SLEPC
-
-// Enable functionality based on the MPFR library.
-#cmakedefine MFEM_USE_MPFR
-
-// Enable MFEM functionality based on the PUMI library.
-#cmakedefine MFEM_USE_PUMI
-
-// Enable Moonolith-based general interpolation between finite element spaces.
-#cmakedefine MFEM_USE_MOONOLITH
-
-// Enable MFEM functionality based on the HIOP library.
-#cmakedefine MFEM_USE_HIOP
-
-// Enable MFEM functionality based on the GSLIB library.
+// Enable MFEM functionality based on the GSLIB library
 #cmakedefine MFEM_USE_GSLIB
 
-// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
+// Enable MFEM functionality based on the NetCDF library
+#cmakedefine MFEM_USE_NETCDF
+
+// Enable MFEM functionality based on the PETSc library
+#cmakedefine MFEM_USE_PETSC
+
+// Enable MFEM functionality based on the SLEPc library
+#cmakedefine MFEM_USE_SLEPC
+
+// Enable MFEM functionality based on the Sidre library
+#cmakedefine MFEM_USE_SIDRE
+
+// Enable the use of SIMD in the high performance templated classes
+#cmakedefine MFEM_USE_SIMD
+
+// Enable MFEM functionality based on the FMS library
+#cmakedefine MFEM_USE_FMS
+
+// Enable MFEM functionality based on Conduit
+#cmakedefine MFEM_USE_CONDUIT
+
+// Enable MFEM functionality based on the PUMI library
+#cmakedefine MFEM_USE_PUMI
+
+// Enable MFEM functionality based on the HiOp library
+#cmakedefine MFEM_USE_HIOP
+
+// Build the GPU/CUDA-enabled version of the MFEM library.
 // Requires a CUDA compiler (nvcc).
 #cmakedefine MFEM_USE_CUDA
 
-// Build the AMD GPU/HIP-enabled version of the MFEM library.
+// Build the HIP-enabled version of the MFEM library.
 // Requires a HIP compiler (hipcc).
 #cmakedefine MFEM_USE_HIP
 
-// Enable functionality based on the RAJA library.
+// Enable MFEM functionality based on the RAJA library
 #cmakedefine MFEM_USE_RAJA
 
-// Enable functionality based on the OCCA library.
+// Enable MFEM functionality based on the OCCA library
 #cmakedefine MFEM_USE_OCCA
 
-// Enable functionality based on the libCEED library.
+// Enable MFEM functionality based on the libCEED library
 #cmakedefine MFEM_USE_CEED
 
-// Enable functionality based on the Caliper library.
-#cmakedefine MFEM_USE_CALIPER
-
-// Enable functionality based on the Algoim library.
-#cmakedefine MFEM_USE_ALGOIM
-
-// Enable functionality based on the Umpire library.
+// Enable MFEM functionality based on the Umpire library
 #cmakedefine MFEM_USE_UMPIRE
 
-// Enable IO functionality based on the ADIOS2 library.
+// Enable MFEM functionality based on the ADIOS2 library
 #cmakedefine MFEM_USE_ADIOS2
 
+// Enable MFEM functionality based on the Caliper library
+#cmakedefine MFEM_USE_CALIPER
+
+// Which library functions to use in class StopWatch for measuring time.
+// For a list of the available options, see INSTALL.
+// If not defined, an option is selected automatically.
+#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
+
+// Enable MFEM functionality based on the SUNDIALS libraries.
+#cmakedefine MFEM_USE_SUNDIALS
+
 // Version of HYPRE used for building MFEM.
 #cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
 
@@ -186,19 +175,13 @@
 // Enable interface to the MKL CPardiso library.
 #cmakedefine MFEM_USE_MKL_CPARDISO
 
-// Enable interface to the MKL Pardiso library.
-#cmakedefine MFEM_USE_MKL_PARDISO
-
-// Use forward mode for automatic differentiation.
+// Use forward mode for automatic differentiation
 #cmakedefine MFEM_USE_ADFORWARD
 
-// Enable the use of the CoDiPack library for AD.
+// Enable the use of the CoDiPack library for AD
 #cmakedefine MFEM_USE_CODIPACK
 
-// Enable functionality based on the Google Benchmark library.
+// Enable MFEM functionality based on the Google Benchmark library.
 #cmakedefine MFEM_USE_BENCHMARK
 
-// Enable Enzyme for AD
-#cmakedefine MFEM_USE_ENZYME
-
 #endif // MFEM_CONFIG_HEADER

config/cmake/modules/FindAMGX.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindAxom.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindBenchmark.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindBlitz.cmake

@@ -1,22 +0,0 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Defines the following variables:
-#   - BLITZ_FOUND
-#   - BLITZ_LIBRARIES
-#   - BLITZ_INCLUDE_DIRS
-
-include(MfemCmakeUtilities)
-mfem_find_package(Blitz BLITZ BLITZ_DIR
-       	"include" "blitz/blitz.h"
-       	"lib" "blitz"
-  	"Paths to headers required by Blitz."
-       	"Libraries required by Blitz.")

config/cmake/modules/FindCODIPACK.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindCXXABIDemangle.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindCaliper.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -16,22 +16,7 @@
 
 include(MfemCmakeUtilities)
 mfem_find_package(Caliper CALIPER CALIPER_DIR
-      "include" "caliper/cali.h"
-      "lib" "caliper"
-      "Paths to headers required by Caliper."
-      "Libraries required by Caliper.")
-
-# Append adiak path/lib if the user provided ADIAK_DIR
-if(ADIAK_DIR AND EXISTS ${ADIAK_DIR})
-    find_package(adiak NO_DEFAULT_PATH REQUIRED PATHS ${ADIAK_DIR}/lib/cmake/adiak ${ADIAK_DIR})
-    list(APPEND CALIPER_INCLUDE_DIRS ${adiak_INCLUDE_DIRS})
-    list(APPEND CALIPER_LIBRARIES ${adiak_LIBRARIES})
-endif()
-
-# Append gotcha path/lib if the user provided GOTCHA_DIR
-if(GOTCHA_DIR AND EXISTS ${GOTCHA_DIR})
-    find_package(gotcha NO_DEFAULT_PATH REQUIRED PATHS ${GOTCHA_DIR}/lib/cmake/gotcha ${GOTCHA_DIR})
-    list(APPEND CALIPER_INCLUDE_DIRS ${gotcha_INCLUDE_DIRS})
-    list(APPEND CALIPER_LIBRARIES ${gotcha_LIBRARIES})
-endif()
-
+       	"include" "caliper/cali.h"
+       	"lib" "caliper"
+  	"Paths to headers required by Caliper."
+       	"Libraries required by Caliper.")

config/cmake/modules/FindConduit.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
   # we only need  HDF5 if Conduit was built with HDF5 support
   set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
       "Additional packages required by Conduit.")
-  # Suppress warning about HDF5_ROOT being set
-  if (POLICY CMP0074)
-    cmake_policy(SET CMP0074 NEW)
-  endif()
-  # HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
-  # MFEM's FindHDF5.cmake is not used.
-  set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
-else()
-  message(STATUS "Conduit Relay HDF5 Support is DISABLED")
+  else()
+    message(STATUS "Conduit Relay HDF5 Support is DISABLED")
 endif()
 
 include(MfemCmakeUtilities)
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
   ADD_COMPONENT relay
     "include;include/conduit" conduit_relay.hpp "lib" conduit_relay
   ADD_COMPONENT blueprint
-    "include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
+      "include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)

config/cmake/modules/FindENZYME.cmake

@@ -1,27 +0,0 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-message(STATUS "Looking for ENZYME ...")
-message(STATUS "   in ENZYME_DIR = ${ENZYME_DIR}")
-
-# Make sure the directory and version combination works. Do nothing otherwise.
-if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
-  message(STATUS "Found ENZYME: ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
-
-  # Set ENZYME_FOUND
-  set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
-
-  # Set CXX flags to accommodate the Enzyme Clang plugin
-  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
-  set(MFEM_USE_ENZYME YES)
-else()
-
-endif()

config/cmake/modules/FindFMS.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindGSLIB.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -15,5 +15,5 @@
 #   - GSLIB_INCLUDE_DIRS
 
 include(MfemCmakeUtilities)
-mfem_find_package(GSLIB GSLIB GSLIB_DIR "include" gslib.h "lib" gs
+mfem_find_package(gslib GSLIB GSLIB_DIR "include" gslib.h "lib" gs
   "Paths to headers required by GSLIB." "Libraries required by GSLIB.")

config/cmake/modules/FindHDF5.cmake

@@ -1,70 +0,0 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Defines the following variables:
-#   - HDF5_FOUND - If HDF5 was found
-#   - HDF5_LIBRARIES - The HDF5 libraries
-#   - HDF5_INCLUDE_DIRS - The HDF5 include directories
-
-# NOTE: Using this FindHDF5.cmake instead of the CMake provided version may lead
-#       to issues with some TPL libraries that depend (or may depend) on HDF5.
-#       For this reason, we should consider removing this file, or at least
-#       making it use the CMake provided version by default and apply the logic
-#       below only when specifically requested by a user.  -V. Dobrev
-
-# First Check for HDF5_DIR
-if(NOT HDF5_DIR)
-  message(FATAL_ERROR
-    "Could not find HDF5. HDF5 support needs explicit HDF5_DIR")
-endif()
-
-if (NOT HDF5_FIND_QUIETLY)
-  message(STATUS "Looking for HDF5 ...")
-  message(STATUS "   in HDF5_DIR = ${HDF5_DIR}")
-endif()
-
-# Find includes
-find_path( HDF5_INCLUDE_DIRS hdf5.h
-           PATHS  ${HDF5_DIR}/include/
-           NO_DEFAULT_PATH
-           NO_CMAKE_ENVIRONMENT_PATH
-           NO_CMAKE_PATH
-           NO_SYSTEM_ENVIRONMENT_PATH
-           NO_CMAKE_SYSTEM_PATH)
-
-find_library( __HDF5_LIBRARY NAMES hdf5 libhdf5 libhdf5_D libhdf5_debug
-              PATHS ${HDF5_DIR}/lib
-              NO_DEFAULT_PATH
-              NO_CMAKE_ENVIRONMENT_PATH
-              NO_CMAKE_PATH
-              NO_SYSTEM_ENVIRONMENT_PATH
-              NO_CMAKE_SYSTEM_PATH)
-
-find_library( __HDF5_HL_LIBRARY NAMES hdf5_hl libhdf5_hl libhdf5_hl_D libhdf5_hl_debug
-              PATHS ${HDF5_DIR}/lib
-              NO_DEFAULT_PATH
-              NO_CMAKE_ENVIRONMENT_PATH
-              NO_CMAKE_PATH
-              NO_SYSTEM_ENVIRONMENT_PATH
-              NO_CMAKE_SYSTEM_PATH)
-
-set(HDF5_LIBRARIES ${__HDF5_HL_LIBRARY} ${__HDF5_LIBRARY})
-
-include(FindPackageHandleStandardArgs)
-
-# Handle the QUIETLY and REQUIRED arguments and set HDF5_FOUND to TRUE if all
-# listed variables are TRUE
-find_package_handle_standard_args(HDF5
-                                  " *** HDF5 not found. Please set HDF5_DIR."
-                                  HDF5_LIBRARIES
-                                  HDF5_INCLUDE_DIRS
-                                  __HDF5_LIBRARY
-                                  __HDF5_HL_LIBRARY)

config/cmake/modules/FindHIOP.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindHYPRE.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -14,13 +14,9 @@
 #   - HYPRE_LIBRARIES
 #   - HYPRE_INCLUDE_DIRS
 #   - HYPRE_VERSION
-#   - HYPRE_USING_CUDA (internal)
 #   - HYPRE_USING_HIP (internal)
 
 if (HYPRE_FOUND)
-  if (HYPRE_USING_CUDA)
-    find_package(CUDAToolkit REQUIRED)
-  endif()
   if (HYPRE_USING_HIP)
     find_package(rocsparse REQUIRED)
     find_package(rocrand REQUIRED)
@@ -31,20 +27,6 @@ endif()
 include(MfemCmakeUtilities)
 mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
   "Paths to headers required by HYPRE." "Libraries required by HYPRE."
-  CHECK_BUILD HYPRE_USING_CUDA FALSE
-  "
-#undef HYPRE_USING_CUDA
-#include <HYPRE_config.h>
-
-#ifndef HYPRE_USING_CUDA
-#error HYPRE is built without CUDA.
-#endif
-
-int main()
-{
-   return 0;
-}
-"
   CHECK_BUILD HYPRE_USING_HIP FALSE
   "
 #undef HYPRE_USING_HIP
@@ -75,16 +57,6 @@ if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
   endif()
 endif()
 
-if (HYPRE_FOUND AND HYPRE_USING_CUDA)
-  find_package(CUDAToolkit REQUIRED)
-  get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
-  get_target_property(CURAND_LIBRARIES CUDA::curand LOCATION)
-  list(APPEND HYPRE_LIBRARIES ${CUSPARSE_LIBRARIES} ${CURAND_LIBRARIES})
-  set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
-      "HYPRE libraries + dependencies." FORCE)
-  message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
-endif()
-
 if (HYPRE_FOUND AND HYPRE_USING_HIP)
   find_package(rocsparse REQUIRED)
   find_package(rocrand REQUIRED)

config/cmake/modules/FindLIBDL.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindLibunwind.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindMETIS.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindMFEMBacktrace.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindMKL_CPARDISO.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindMKL_PARDISO.cmake

@@ -1,27 +0,0 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Defines the following variables:
-#   - MKL_PARDISO_FOUND
-#   - MKL_PARDISO_LIBRARIES
-#   - MKL_PARDISO_INCLUDE_DIRS
-
-if(NOT MKL_LIBRARY_DIR)
-  message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
-  set(MKL_LIBRARY_DIR "lib/intel64")
-endif()
-
-include(MfemCmakeUtilities)
-mfem_find_package(MKL_PARDISO MKL_PARDISO
-    MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
-  "Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
-  ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
-  ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)

config/cmake/modules/FindMPFR.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindMUMPS.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -11,9 +11,8 @@
 
 # Sets the following variables:
 #   - MUMPS_FOUND
-#   - MUMPS_LIBRARIES
 #   - MUMPS_INCLUDE_DIRS
-#   - MUMPS_VERSION
+#   - MUMPS_LIBRARIES
 
 include(MfemCmakeUtilities)
 mfem_find_package(MUMPS MUMPS MUMPS_DIR
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
   "Libraries required by MUMPS."
   ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
   ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
-
-if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
-  try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
-          ${CMAKE_CURRENT_BINARY_DIR}/config
-          ${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
-          CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
-          RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
-  if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
-    string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
-    set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
-    message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
-  else()
-    message(FATAL_ERROR "Unable to determine MUMPS version.")
-  endif()
-endif()

config/cmake/modules/FindMesquite.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -10,13 +10,11 @@
 # CONTRIBUTING.md for details.
 
 # Defines the following variables:
-#   - ALGOIM_FOUND
-#   - ALGOIM_LIBRARIES
-#   - ALGOIM_INCLUDE_DIRS
+#   - MESQUITE_FOUND
+#   - MESQUITE_LIBRARIES
+#   - MESQUITE_INCLUDE_DIRS
 
 include(MfemCmakeUtilities)
-mfem_find_package(Algoim ALGOIM ALGOIM_DIR
-        "include;src" "algoim_quad.hpp"
-       	"" ""
-        "Paths to headers required by Algoim."
-        "Libraries required by Algoim.")
+mfem_find_package(Mesquite MESQUITE MESQUITE_DIR
+  "include" "Mesquite_all_headers.hpp" "lib" "mesquite"
+  "Paths to headers required by Mesquite." "Libraries required by Mesquite.")

config/cmake/modules/FindNetCDF.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -14,38 +14,21 @@
 #   - NETCDF_LIBRARIES
 #   - NETCDF_INCLUDE_DIRS
 
-# Suppress warning about HDF5_ROOT being set
-if (POLICY CMP0074)
-  cmake_policy(SET CMP0074 NEW)
-endif()
-
 include(MfemCmakeUtilities)
 
 # FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
-# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
-# FindHDF5.cmake is not used.)
 set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
-
 # We need to guard against the case where HDF5 was already found but without
 # the HL extensions (in which case mfem_find_package will treat the package
 # as already having been found), so we reset the variable to force FindHDF5.cmake
 # to be called for a second time
 set(HDF5_FOUND OFF)
 enable_language(C) # FindHDF5.cmake uses the C compiler
-
 mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
   "Paths to headers required by NetCDF." "Libraries required by NetCDF.")
-
 # The HL extension libraries are in a separate variable and must precede
 # the "regular" hdf5 library, as hdf5_hl depends on hdf5
 # The netcdf library will always be the first element of NETCDF_LIBRARIES
 # and we need to insert after that library but before the hdf5 library, so
 # position 1 is used
-# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
-# FindHDF5.cmake is not used.)
-if (HDF5_C_LIBRARY_hdf5_hl)
-  list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
-  if (NOT NetCDF_FIND_QUIETLY)
-    message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
-  endif()
-endif()
+list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})

config/cmake/modules/FindOCCA.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindPARELAG.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindPOSIXClocks.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindParMETIS.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindRAJA.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -14,27 +14,17 @@
 #   - RAJA_LIBRARIES
 #   - RAJA_INCLUDE_DIRS
 
-if (RAJA_FOUND)
-   return()
+include(MfemCmakeUtilities)
+mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
+  "Paths to headers required by RAJA." "Libraries required by RAJA.")
+
+if (NOT RAJA_CONFIG_CMAKE)
+   set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
 endif()
-message(STATUS "Looking for RAJA ...")
-if (RAJA_DIR)
-   message(STATUS "   in RAJA_DIR = ${RAJA_DIR}")
-   find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
-endif()
-if (NOT RAJA_FOUND)
-   message(STATUS "   in standard CMake locations")
-   find_package(RAJA CONFIG)
-endif()
-if (RAJA_FOUND)
-   set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
-   set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
-   message(STATUS
-      "Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
-else()
-   set(msg STATUS)
-   if (RAJA_FIND_REQUIRED)
-      set(msg FATAL_ERROR)
+if (EXISTS "${RAJA_CONFIG_CMAKE}")
+   include("${RAJA_CONFIG_CMAKE}")
+   if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
+      message(FATAL_ERROR
+         "RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
    endif()
-   message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
 endif()

config/cmake/modules/FindSLEPc.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindSTRUMPACK.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindSUNDIALS.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
     "include" nvector/nvector_serial.h "lib" sundials_nvecserial
   ADD_COMPONENT NVector_Cuda
     "include" nvector/nvector_cuda.h "lib" sundials_nveccuda
-  ADD_COMPONENT NVector_Hip
-    "include" nvector/nvector_hip.h "lib" sundials_nvechip
+  ADD_COMPONENT NVector_ParHyp
+    "include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
   ADD_COMPONENT NVector_Parallel
     "include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
   ADD_COMPONENT NVector_MPIPlusX

config/cmake/modules/FindScotch.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindSuiteSparse.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindSuperLUDist.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindUMPIRE.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -14,23 +14,6 @@
 #   - UMPIRE_LIBRARIES
 #   - UMPIRE_INCLUDE_DIRS
 
-if (NOT umpire_DIR AND UMPIRE_DIR)
-  set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
-endif()
-message(STATUS "Looking for UMPIRE ...")
-message(STATUS "   in UMPIRE_DIR = ${UMPIRE_DIR}")
-message(STATUS "      umpire_DIR = ${umpire_DIR}")
-find_package(umpire CONFIG)
-set(UMPIRE_FOUND ${umpire_FOUND})
-set(UMPIRE_LIBRARIES "umpire")
-if (UMPIRE_FOUND)
-  message(STATUS
-    "Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
-else()
-  set(msg STATUS)
-  if (UMPIRE_FIND_REQUIRED)
-    set(msg FATAL_ERROR)
-  endif()
-  message(${msg}
-    "UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
-endif()
+include(MfemCmakeUtilities)
+mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
+  "Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")

config/cmake/modules/Find_GnuTLS.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/FindlibCEED.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/cmake/modules/MfemCmakeUtilities.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -43,18 +43,22 @@ function(convert_filenames_to_full_paths NAMES)
   set(${NAMES} ${tmp_names} PARENT_SCOPE)
 endfunction()
 
-# Wrapper for add_executable
+# Wrapper for add_executable that calls the HIP wrapper if applicable
 macro(mfem_add_executable NAME)
-  add_executable(${NAME} ${ARGN})
-  if (MFEM_USE_CUDA)
-    set_target_properties(${NAME} PROPERTIES
-      CUDA_RESOLVE_DEVICE_SYMBOLS ON)
+  if (MFEM_USE_HIP)
+    add_executable(${NAME} ${ARGN})
+  else()
+    add_executable(${NAME} ${ARGN})
   endif()
 endmacro()
 
-# Wrapper for add_library
+# Wrapper for add_library that calls the HIP wrapper if applicable
 macro(mfem_add_library NAME)
-  add_library(${NAME} ${ARGN})
+  if (MFEM_USE_HIP)
+    add_library(${NAME} ${ARGN})
+  else()
+    add_library(${NAME} ${ARGN})
+  endif()
 endmacro()
 
 # Simple shortcut to add_custom_target() with option to add the target to the
@@ -103,6 +107,25 @@ macro(add_mfem_examples EXE_SRCS)
       ${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
 
     target_link_libraries(${EXE_NAME} mfem)
+    if (MFEM_USE_MPI)
+      # Not needed: (mfem already links with MPI_CXX_LIBRARIES)
+      # target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
+
+      # Language-specific include directories:
+      if (MPI_CXX_INCLUDE_PATH)
+        target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
+      endif()
+      if (MPI_CXX_COMPILE_FLAGS)
+        separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
+          "${MPI_CXX_COMPILE_FLAGS}")
+        target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
+      endif()
+
+      if (MPI_CXX_LINK_FLAGS)
+        set_target_properties(${EXE_NAME} PROPERTIES
+          LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
+      endif()
+    endif()
   endforeach(SRC_FILE)
 endmacro()
 
@@ -143,16 +166,53 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
 
   # Append the additional libraries and options
   if (LIBRARIES_LIST)
-    target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
+    if(CMAKE_VERSION VERSION_GREATER 2.8.11)
+      target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
+    else()
+      target_link_libraries(${MFEM_EXE_NAME} ${LIBRARIES_LIST})
+    endif()
   endif()
   if (EXTRA_OPTIONS_LIST)
     string(REPLACE ";" " " EXTRA_OPTIONS_STRING "${EXTRA_OPTIONS_LIST}")
     message(STATUS "${MFEM_EXE_NAME}: add flags \"${EXTRA_OPTIONS_STRING}\"")
-    target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
+    if(CMAKE_VERSION VERSION_GREATER 2.8.11)
+      target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
+    else()
+      get_target_property(THIS_COMPILE_FLAGS ${MFEM_EXE_NAME} COMPILE_FLAGS)
+      if (THIS_COMPILE_FLAGS)
+        set(THIS_COMPILE_FLAGS "${THIS_COMPILE_FLAGS} ${EXTRA_OPTIONS_STRING}")
+      else()
+        set(THIS_COMPILE_FLAGS "${EXTRA_OPTIONS_STRING}")
+      endif()
+      set_target_properties(${MFEM_EXE_NAME}
+        PROPERTIES COMPILE_FLAGS ${THIS_COMPILE_FLAGS})
+    endif()
   endif()
   if (EXTRA_DEFINES_LIST)
     target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
   endif()
+
+  # Handle the MPI separately
+  if (MFEM_USE_MPI)
+    # Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
+    if(CMAKE_VERSION VERSION_GREATER 2.8.11)
+      target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
+    else()
+      target_link_libraries(${MFEM_EXE_NAME} ${MPI_CXX_LIBRARIES})
+    endif()
+
+    if (MPI_CXX_INCLUDE_PATH)
+      target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
+    endif()
+    if (MPI_CXX_COMPILE_FLAGS)
+      target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_FLAGS})
+    endif()
+
+    if (MPI_CXX_LINK_FLAGS)
+      set_target_properties(${MFEM_EXE_NAME} PROPERTIES
+        LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
+    endif()
+  endif()
 endmacro()
 
 
@@ -397,9 +457,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
               break()
             endif()
           endforeach()
-          if (Required AND NOT ${ReqPack}_FOUND)
+          if (${Required} AND NOT ${ReqPack}_FOUND)
             message(FATAL_ERROR " *** Required package ${ReqPack} not found."
-              " Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
+              "Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
           endif()
         endif()
       endif()
@@ -465,18 +525,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
           endif()
           get_target_property(IsImported ${TargetName} IMPORTED)
           if (IsImported)
-            get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
-            # message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
             set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
             if (NOT ImportConfig)
               set(ImportConfig RELEASE)
-              list(FIND ImpConfigs ${ImportConfig} _Index)
-              if (_Index EQUAL -1)
-                list(GET ImpConfigs 0 ImportConfig)
-              endif()
             endif()
             set(ImportConfigSuffix "_${ImportConfig}")
-            if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
+            get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
+            list(FIND ImpConfigs ${ImportConfig} _Index)
+            if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
               set(ImportConfig "NO_CONFIG")
               set(ImportConfigSuffix "")
               # message(FATAL_ERROR " *** ${ReqPack}: configuration "
@@ -494,8 +550,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
           else()
             # Set _Pack_LIBS from the target properties for ImportConfig
             foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
-                IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
-                INTERFACE_LINK_LIBRARIES)
+                IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
               get_target_property(_value ${TargetName} ${_prop})
               if (_value)
                 list(APPEND _Pack_LIBS ${_value})
@@ -746,7 +801,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
       list(APPEND CompileOpts "-isystem \"${SysDir}\"")
     endforeach()
   endif()
-  set(AddInterfaceLinkLibs TRUE)
   if ("${type}" STREQUAL "STATIC_LIBRARY")
     get_target_property(Location ${tgt} LOCATION)
     if (Location)
@@ -768,27 +822,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
       message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
     endif()
   elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
-    # The INTERFACE_LINK_LIBRARIES property is handled below.
-    # Other properties we may need to handle:
-    # INTERFACE_LINK_DEPENDS
-    # INTERFACE_LINK_DIRECTORIES
-    # INTERFACE_LINK_OPTIONS
-  else()
-    message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
-      " which is not supported!")
-    set(AddInterfaceLinkLibs FALSE)
-  endif()
-  if (AddInterfaceLinkLibs)
     get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
-    # message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
     if (Libs)
       foreach(Lib ${Libs})
         if (NOT (TARGET ${Lib}))
-          # message(STATUS "Lib = ${Lib}")
-          # Filter-out generator expressions
-          if (NOT ("${Lib}" MATCHES "^\\$"))
-            list(APPEND LinkOpts "${Lib}")
-          endif()
+          list(APPEND LinkOpts "${Lib}")
         else()
           mfem_get_target_options(${Lib} COpts LOpts)
           list(APPEND CompileOpts ${COpts})
@@ -796,6 +834,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
         endif()
       endforeach()
     endif()
+    # Other properties we may need to handle:
+    # INTERFACE_LINK_DEPENDS
+    # INTERFACE_LINK_DIRECTORIES
+    # INTERFACE_LINK_OPTIONS
+  else()
+    message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
+      " which is not supported!")
   endif()
 
   # Other potentially relevant properties:
@@ -819,9 +864,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
   set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
   set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
 
-  # message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
-  # message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
-
 endfunction(mfem_get_target_options)
 
 
@@ -844,15 +886,14 @@ function(mfem_export_mk_files)
   set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
       MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
       MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP
-      MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_SUITESPARSE
+      MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
       MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
       MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
       MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
       MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
       MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
       MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
-      MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
-      MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
+      MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG)
   foreach(var ${CONFIG_MK_BOOL_VARS})
     if (${var})
       set(${var} YES)
@@ -873,7 +914,7 @@ function(mfem_export_mk_files)
          "${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
          MFEM_CXXFLAGS)
   set(MFEM_TPLFLAGS "")
-  foreach(dir ${TPL_INCLUDE_DIRS})
+  foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
     set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
   endforeach()
   # TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
@@ -936,11 +977,9 @@ function(mfem_export_mk_files)
       string(REGEX REPLACE "^SCOREC::" "" libname ${pumilib})
       string(FIND "${pumilib}" ".a" staticlib)
       string(FIND "${pumilib}" ".so" sharedlib)
-      string(FIND "${pumilib}" ".dylib" dynamiclib)
       find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFAULT_PATH)
       if (NOT "${sharedlib}" MATCHES "-1" OR
-          NOT "${staticlib}" MATCHES "-1" OR
-          NOT "${dynamiclib}" MATCHES "-1"  )
+          NOT "${staticlib}" MATCHES "-1"   )
         set(MFEM_EXT_LIBS "${pumilib} ${MFEM_EXT_LIBS}")
       elseif (NOT "${lib}" MATCHES "lib-NOTFOUND")
         set(MFEM_EXT_LIBS "${lib} ${MFEM_EXT_LIBS}")
@@ -955,7 +994,7 @@ function(mfem_export_mk_files)
   foreach(lib ${TPL_LIBRARIES})
     get_filename_component(suffix ${lib} EXT)
     # handle interfaces (e.g., SCOREC::apf)
-    if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
+    if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*")
     elseif (TARGET "${lib}")
       mfem_get_target_options(${lib} CompileOpts LinkOpts)
       # Removing duplicates may lead to issues:

config/config.hpp

@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -30,31 +30,10 @@
 #endif
 
 // Windows specific options
-#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
+#ifdef _WIN32
 // Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
 #define _USE_MATH_DEFINES
 #endif
-// Macro MFEM_EXPORT: this macro is used when declaring exported global
-// variables and static class variables in public header files, e.g.:
-//    extern MFEM_EXPORT Geometry Geometries;
-//    static MFEM_EXPORT Device device_singleton;
-// In cases where a class contains multiple static variables, instead of marking
-// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
-// e.g.:
-//    class MFEM_EXPORT MemoryManager ...
-// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
-// variable that needs MFEM_EXPORT does not have it. However, builds with
-// optional external libraries are not tested and may require separate checks to
-// determine the necessity of MFEM_EXPORT.
-#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
-#ifdef mfem_EXPORTS
-#define MFEM_EXPORT __declspec(dllexport)
-#else
-#define MFEM_EXPORT __declspec(dllimport)
-#endif
-#else
-#define MFEM_EXPORT
-#endif
 // On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
 // the following macro allows us to get M_PI and some needed functions, e.g.
 // posix_memalign(), strdup(), strerror_r().

config/config.hpp.in

@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //
@@ -30,18 +30,15 @@
 #define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
 #define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
 
-// The absolute path of the MFEM source prefix.
+// The absolute path of the MFEM source prefix
 // #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
 
-// The absolute path of the MFEM installation prefix.
+// The absolute path of the MFEM installation prefix
 // #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
 
 // Description of the git commit used to build MFEM.
 // #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
 
-// Enable shared library build of MFEM.
-// #define MFEM_SHARED_BUILD
-
 // Build the parallel MFEM library.
 // Requires an MPI compiler, and the libraries HYPRE and METIS.
 // #define MFEM_USE_MPI
@@ -88,10 +85,13 @@
 // Enable MFEM functionality based on the SUNDIALS libraries.
 // #define MFEM_USE_SUNDIALS
 
+// Enable MFEM functionality based on the Mesquite library.
+// #define MFEM_USE_MESQUITE
+
 // Enable MFEM functionality based on the SuiteSparse library.
 // #define MFEM_USE_SUITESPARSE
 
-// Enable MFEM functionality based on the SuperLU_DIST library.
+// Enable MFEM functionality based on the SuperLU library.
 // #define MFEM_USE_SUPERLU
 // #define MFEM_USE_SUPERLU5
 
@@ -102,49 +102,46 @@
 // Enable MFEM functionality based on the STRUMPACK library.
 // #define MFEM_USE_STRUMPACK
 
-// Enable MFEM features based on the Ginkgo library.
+// Enable MFEM features based on the Ginkgo library
 // #define MFEM_USE_GINKGO
 
 // Enable MFEM functionality based on the AmgX library.
 // #define MFEM_USE_AMGX
 
-// Enable secure socket streams based on the GNUTLS library.
+// Enable secure socket streams based on the GNUTLS library
 // #define MFEM_USE_GNUTLS
 
-// Enable Sidre support.
+// Enable Sidre support
 // #define MFEM_USE_SIDRE
 
-// Enable the use of SIMD in the high performance templated classes.
+// Enable the use of SIMD in the high performance templated classes
 // #define MFEM_USE_SIMD
 
-// Enable FMS support.
+// Enable FMS support
 // #define MFEM_USE_FMS
 
-// Enable Conduit support.
+// Enable Conduit support
 // #define MFEM_USE_CONDUIT
 
-// Enable functionality based on the NetCDF library (reading CUBIT files).
+// Enable functionality based on the NetCDF library (reading CUBIT files)
 // #define MFEM_USE_NETCDF
 
-// Enable functionality based on the PETSc library.
+// Enable functionality based on the PETSc library
 // #define MFEM_USE_PETSC
 
-// Enable functionality based on the SLEPc library.
+// Enable functionality based on the SLEPc library
 // #define MFEM_USE_SLEPC
 
 // Enable functionality based on the MPFR library.
 // #define MFEM_USE_MPFR
 
-// Enable MFEM functionality based on the PUMI library.
+// Enable MFEM functionality based on the PUMI library
 // #define MFEM_USE_PUMI
 
-// Enable Moonolith-based general interpolation between finite element spaces.
-// #define MFEM_USE_MOONOLITH
-
 // Enable MFEM functionality based on the HIOP library.
 // #define MFEM_USE_HIOP
 
-// Enable MFEM functionality based on the GSLIB library.
+// Enable MFEM functionality based on the GSLIB library
 // #define MFEM_USE_GSLIB
 
 // Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
@@ -167,9 +164,6 @@
 // Enable functionality based on the Caliper library.
 // #define MFEM_USE_CALIPER
 
-// Enable functionality based on the Algoim library.
-// #define MFEM_USE_ALGOIM
-
 // Enable functionality based on the Umpire library.
 // #define MFEM_USE_UMPIRE
 
@@ -186,19 +180,13 @@
 // Enable interface to the MKL CPardiso library.
 // #define MFEM_USE_MKL_CPARDISO
 
-// Enable interface to the MKL Pardiso library.
-// #define MFEM_USE_MKL_PARDISO
-
-// Use forward mode for automatic differentiation.
+// Use forward mode for automatic differentiation
 // #define MFEM_USE_ADFORWARD
 
-// Enable the use of the CoDiPack library for AD.
+// Enable the use of the CoDiPack library for AD
 // #define MFEM_USE_CODIPACK
 
 // Enable functionality based on the Google Benchmark library.
 // #define MFEM_USE_BENCHMARK
 
-// Enable the Enzyme LLVM plugin
-// #define MFEM_USE_ENZYME
-
 #endif // MFEM_CONFIG_HEADER

config/config.mk.in

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -29,6 +29,7 @@ MFEM_USE_OPENMP        = @MFEM_USE_OPENMP@
 MFEM_USE_MEMALLOC      = @MFEM_USE_MEMALLOC@
 MFEM_TIMER_TYPE        = @MFEM_TIMER_TYPE@
 MFEM_USE_SUNDIALS      = @MFEM_USE_SUNDIALS@
+MFEM_USE_MESQUITE      = @MFEM_USE_MESQUITE@
 MFEM_USE_SUITESPARSE   = @MFEM_USE_SUITESPARSE@
 MFEM_USE_SUPERLU       = @MFEM_USE_SUPERLU@
 MFEM_USE_SUPERLU5      = @MFEM_USE_SUPERLU5@
@@ -57,13 +58,10 @@ MFEM_USE_UMPIRE        = @MFEM_USE_UMPIRE@
 MFEM_USE_SIMD          = @MFEM_USE_SIMD@
 MFEM_USE_ADIOS2        = @MFEM_USE_ADIOS2@
 MFEM_USE_MKL_CPARDISO  = @MFEM_USE_MKL_CPARDISO@
-MFEM_USE_MKL_PARDISO   = @MFEM_USE_MKL_PARDISO@
-MFEM_USE_MOONOLITH     = @MFEM_USE_MOONOLITH@
 MFEM_USE_ADFORWARD     = @MFEM_USE_ADFORWARD@
 MFEM_USE_CODIPACK      = @MFEM_USE_CODIPACK@
 MFEM_USE_BENCHMARK     = @MFEM_USE_BENCHMARK@
 MFEM_USE_PARELAG       = @MFEM_USE_PARELAG@
-MFEM_USE_ENZYME        = @MFEM_USE_ENZYME@
 
 # Compiler, compile options, and link options
 MFEM_CXX       = @MFEM_CXX@

config/defaults.cmake

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
 endif()
 
 # MFEM options. Set to mimic the default "defaults.mk" file.
-option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
 option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
 option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
 option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
@@ -31,6 +30,7 @@ option(MFEM_USE_OPENMP "Enable the OpenMP backend" OFF)
 option(MFEM_USE_LEGACY_OPENMP "Enable legacy OpenMP usage" OFF)
 option(MFEM_USE_MEMALLOC "Enable the internal MEMALLOC option." ON)
 option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
+option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
 option(MFEM_USE_SUITESPARSE "Enable SuiteSparse usage" OFF)
 option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
 option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
@@ -58,14 +58,11 @@ option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
 option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
 option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
 option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
-option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
 option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
-option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
 option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
 option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
 option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
 option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
-option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
 
 # Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
 # set(MFEM_MPIEXEC "mpirun" CACHE STRING "Command for running MPI tests")
@@ -106,7 +103,12 @@ set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
 # If hypre was compiled to depend on BLAS and LAPACK:
 # set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
 #     "Packages that HYPRE depends on.")
-# CUDA and HIP dependencies for HYPRE are handled in FindHYPRE.cmake.
+if (MFEM_USE_CUDA)
+   # This is only necessary when hypre is built with cuda:
+   set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
+       "Libraries that HYPRE depends on.")
+endif()
+# HIP dependency for HYPRE is handled in FindHYPRE.cmake.
 
 set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
 
@@ -120,6 +122,9 @@ set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
 # set(SUNDIALS_REQUIRED_PACKAGES "SuiteSparse/KLU/AMD/BTF/COLAMD/config"
 #     CACHE STRING "Additional packages required by SUNDIALS.")
 
+set(MESQUITE_DIR "${MFEM_DIR}/../mesquite-2.99" CACHE PATH
+    "Path to the Mesquite library.")
+
 set(SuiteSparse_DIR "${MFEM_DIR}/../SuiteSparse" CACHE PATH
     "Path to the SuiteSparse library.")
 set(SuiteSparse_REQUIRED_PACKAGES "BLAS" "METIS"
@@ -130,18 +135,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
 set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
     "Additional packages required by ParMETIS.")
 
-set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
+set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
     "Path to the SuperLU_DIST library.")
 # SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
-set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
-    "LAPACK" "BLAS" CACHE STRING
+set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
     "Additional packages required by SuperLU_DIST.")
 
-set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
+set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
     "Path to the MUMPS library.")
-# MUMPS may also depend on "OpenMP", depending on how it was compiled.
-set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
-    "ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
+# Packages required by MUMPS, depending on how it was compiled.
+set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
     "Additional packages required by MUMPS.")
 # If the MPI package does not find all required Fortran libraries:
 # set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -152,8 +155,7 @@ set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
 # STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
 # Starting with v2.2.0 of STRUMPACK, ParMETIS and Scotch are optional.
 set(STRUMPACK_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
-    "Scotch/ptscotch/ptscotcherr/scotch/scotcherr"
-    "ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
+    "ScaLAPACK" "Scotch/ptscotch/ptscotcherr/scotch/scotcherr" CACHE STRING
     "Additional packages required by STRUMPACK.")
 # If the MPI package does not find all required Fortran libraries:
 # set(STRUMPACK_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -184,7 +186,6 @@ set(GNUTLS_DIR "" CACHE PATH "Path to the GnuTLS library.")
 
 set(GSLIB_DIR "" CACHE PATH "Path to the GSLIB library.")
 
-set(HDF5_DIR "/usr" CACHE PATH "Path to the HDF5 library.")
 set(NETCDF_DIR "" CACHE PATH "Path to the NetCDF library.")
 set(NetCDF_REQUIRED_PACKAGES "HDF5/C/HL" CACHE STRING
     "Additional packages required by NetCDF.")
@@ -225,18 +226,16 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
 set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
 set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
 
-set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
-
 set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
 set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
+# If RAJA is built with external CAMP:
+# set(RAJA_REQUIRED_PACKAGES "camp"
+#     CACHE STRING "Packages that RAJA depends on.")
+# set(camp_DIR "${MFEM_DIR}/../camp/lib/cmake/camp"
+#     CACHE PATH "Path to CAMP CMake files.")
 set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
 set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
 set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
-set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
-set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
-set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
-    "Packages that ALGOIM depends on.")
-
 set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
     "Path to Google Benchmark")
 

config/defaults.mk

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -42,9 +42,6 @@ STATIC = YES
 SHARED = NO
 
 # CUDA configuration options
-#
-# If you set MFEM_USE_ENZYME=YES, CUDA_CXX has to be configured to use cuda with
-# clang as its host compiler.
 CUDA_CXX = nvcc
 CUDA_ARCH = sm_60
 CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
@@ -58,7 +55,7 @@ HIP_CXX = hipcc
 # example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
 # gfx900, gfx1010, etc.
 HIP_ARCH = gfx900
-HIP_FLAGS = --offload-arch=$(HIP_ARCH)
+HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
 HIP_XCOMPILER =
 HIP_XLINKER   = -Wl,
 
@@ -131,6 +128,7 @@ MFEM_USE_LEGACY_OPENMP = NO
 MFEM_USE_MEMALLOC      = YES
 MFEM_TIMER_TYPE        = $(if $(NOTMAC),2,4)
 MFEM_USE_SUNDIALS      = NO
+MFEM_USE_MESQUITE      = NO
 MFEM_USE_SUITESPARSE   = NO
 MFEM_USE_SUPERLU       = NO
 MFEM_USE_SUPERLU5      = NO
@@ -155,18 +153,14 @@ MFEM_USE_RAJA          = NO
 MFEM_USE_OCCA          = NO
 MFEM_USE_CEED          = NO
 MFEM_USE_CALIPER       = NO
-MFEM_USE_ALGOIM        = NO
 MFEM_USE_UMPIRE        = NO
 MFEM_USE_SIMD          = NO
 MFEM_USE_ADIOS2        = NO
 MFEM_USE_MKL_CPARDISO  = NO
-MFEM_USE_MKL_PARDISO   = NO
-MFEM_USE_MOONOLITH     = NO
 MFEM_USE_ADFORWARD     = NO
 MFEM_USE_CODIPACK      = NO
 MFEM_USE_BENCHMARK     = NO
 MFEM_USE_PARELAG       = NO
-MFEM_USE_ENZYME        = NO
 
 # MPI library compile and link flags
 # These settings are used only when building MFEM with MPI + HIP
@@ -179,7 +173,7 @@ ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
 endif
 
 # ROCM/HIP directory such that ROCM/HIP libraries like rocsparse and rocrand are
-# found in $(HIP_DIR)/lib, usually as links. Typically, this directory is of
+# found in $(HIP_DIR)/lib, usually as links. Typically, this directoory is of
 # the form /opt/rocm-X.Y.Z which is called ROCM_PATH by hipconfig.
 ifeq ($(MFEM_USE_HIP),YES)
    HIP_DIR := $(patsubst %/,%,$(dir $(shell which $(HIP_CXX))))
@@ -207,7 +201,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
 HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
 ifeq (YES,$(MFEM_USE_CUDA))
    # This is only necessary when hypre is built with cuda:
-   HYPRE_LIB += -lcusparse -lcurand -lcublas
+   HYPRE_LIB += -lcusparse -lcurand
 endif
 ifeq (YES,$(MFEM_USE_HIP))
    # This is only necessary when hypre is built with hip:
@@ -251,28 +245,26 @@ POSIX_CLOCKS_LIB = -lrt
 # SUNDIALS library configuration
 # For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
 # and modify cmake variables for hypre for sundials
-SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
-# SUNDIALS >= 6.4.0 requires C++14:
-ifeq ($(MFEM_USE_SUNDIALS),YES)
-   BASE_FLAGS = -std=c++14
-endif
-SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
-SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_DIR)/lib64\
- $(XLINKER)-rpath,$(SUNDIALS_DIR)/lib\
- -L$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib\
+SUNDIALS_DIR    = @MFEM_DIR@/../sundials-5.0.0/instdir
+SUNDIALS_OPT    = -I$(SUNDIALS_DIR)/include
+SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
+SUNDIALS_LIB    = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
  -lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
+
 ifeq ($(MFEM_USE_MPI),YES)
    SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
 endif
 ifeq ($(MFEM_USE_CUDA),YES)
    SUNDIALS_LIB += -lsundials_nveccuda
 endif
-ifeq ($(MFEM_USE_HIP),YES)
-   SUNDIALS_LIB += -lsundials_nvechip
-endif
 # If SUNDIALS was built with KLU:
 # MFEM_USE_SUITESPARSE = YES
 
+# MESQUITE library configuration
+MESQUITE_DIR = @MFEM_DIR@/../mesquite-2.99
+MESQUITE_OPT = -I$(MESQUITE_DIR)/include
+MESQUITE_LIB = -L$(MESQUITE_DIR)/lib -lmesquite
+
 # SuiteSparse library configuration
 LIB_RT = $(if $(NOTMAC),-lrt,)
 SUITESPARSE_DIR = @MFEM_DIR@/../SuiteSparse
@@ -288,10 +280,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
    SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
       -lsuperlu_dist_5.1.0
 else
-   SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
+   SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
    SUPERLU_OPT = -I$(SUPERLU_DIR)/include
    SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
-      -lsuperlu_dist $(LAPACK_LIB)
+      -lsuperlu_dist -lblas
 endif
 
 # SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
@@ -311,50 +303,33 @@ SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
 MPI_FORTRAN_LIB = -lmpifort
 # OpenMPI:
 # MPI_FORTRAN_LIB = -lmpi_mpifh
-# Additional Fortran library:
+# Additional Fortan library:
 # MPI_FORTRAN_LIB += -lgfortran
 
 # MUMPS library configuration
-MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
+MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
 MUMPS_OPT = -I$(MUMPS_DIR)/include
 MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
  -lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
 
 # STRUMPACK library configuration
 STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
-ifeq ($(MFEM_USE_STRUMPACK),YES)
-   BASE_FLAGS = -std=c++14
-endif
 STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
 # If STRUMPACK was build with OpenMP support, the following may be need:
 # STRUMPACK_OPT += $(OPENMP_OPT)
 STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
  $(SCOTCH_LIB) $(SCALAPACK_LIB)
 
-# Ginkgo library configuration
+# Ginkgo library configuration (currently not needed)
 GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
-GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
 GINKGO_BUILD_TYPE=Release
 ifeq ($(MFEM_USE_GINKGO),YES)
    BASE_FLAGS = -std=c++14
 endif
 GINKGO_OPT = -isystem $(GINKGO_DIR)/include
-GINKGO_LIB_DIR = $(sort $(dir $(wildcard\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
-GINKGO_LINK_LIB_DIR = $(GINKGO_DIR)$(subst $(GINKGO_SEARCH_DIR),,$(GINKGO_LIB_DIR))
-ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.a\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.so\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dylib\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dll)))
-ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
- $(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
+GINKGO_LIB_DIR = $(sort $(dir $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a  $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
+ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*d.a  $(GINKGO_DIR)/lib*/libginkgo*d.so $(GINKGO_DIR)/lib*/libginkgo*d.dylib $(GINKGO_DIR)/lib*/libginkgo*d.dll)))
+ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a  $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
 ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
 GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
 ifeq ($(GINKGO_BUILD_TYPE),Debug)
@@ -363,8 +338,7 @@ ifeq ($(GINKGO_BUILD_TYPE),Debug)
   endif
 else
 endif
-GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
- $(GINKGO_LINK)
+GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LIB_DIR) -L$(GINKGO_LIB_DIR) $(GINKGO_LINK)
 
 # AmgX library configuration
 AMGX_DIR = @MFEM_DIR@/../amgx
@@ -413,11 +387,6 @@ ifeq ($(SLEPC_FOUND),YES)
       $(subst $(CXX_XLINKER),$(XLINKER),$(SLEPC_DEP))
 endif
 
-ifeq ($(MFEM_USE_MOONOLITH),YES)
-  include $(MOONOLITH_DIR)/config/moonolith-config.makefile
-  MOONOLITH_LIB=$(MOONOLITH_LIBRARIES)
-endif
-
 # MPFR library configuration
 MPFR_OPT =
 MPFR_LIB = -lmpfr
@@ -492,26 +461,7 @@ OCCA_LIB = $(XLINKER)-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
 # CALIPER library configuration
 CALIPER_DIR = @MFEM_DIR@/../caliper
 CALIPER_OPT = -I$(CALIPER_DIR)/include
-CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 $(XLINKER)-rpath,$(CALIPER_DIR)/lib -L$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib -lcaliper
-
-ifdef ADIAK_DIR
-   CALIPER_OPT += -I$(ADIAK_DIR)/include
-   CALIPER_LIB += $(XLINKER)-rpath,$(ADIAK_DIR)/lib64 $(XLINKER)-rpath,$(ADIAK_DIR)/lib -L$(ADIAK_DIR)/lib64 -L$(ADIAK_DIR)/lib -ladiak
-endif
-ifdef GOTCHA_DIR
-   CALIPER_OPT += -I$(GOTCHA_DIR)/include
-   CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
-endif
-
-# BLITZ library configuration
-BLITZ_DIR = @MFEM_DIR@/../blitz
-BLITZ_OPT = -I$(BLITZ_DIR)/include
-BLITZ_LIB = $(XLINKER)-rpath,$(BLITZ_DIR)/lib -L$(BLITZ_DIR)/lib -lblitz
-
-# ALGOIM library configuration
-ALGOIM_DIR = @MFEM_DIR@/../algoim
-ALGOIM_OPT = -I$(ALGOIM_DIR)/src $(BLITZ_OPT)
-ALGOIM_LIB = $(BLITZ_LIB)
+CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib64 -lcaliper
 
 # BENCHMARK library configuration
 BENCHMARK_DIR = @MFEM_DIR@/../google-benchmark
@@ -524,29 +474,20 @@ CEED_OPT = -I$(CEED_DIR)/include
 CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
 
 # RAJA library configuration
-ifeq ($(MFEM_USE_RAJA),YES)
-   BASE_FLAGS = -std=c++14
-endif
 RAJA_DIR = @MFEM_DIR@/../raja
 RAJA_OPT = -I$(RAJA_DIR)/include
 ifdef CUB_DIR
    RAJA_OPT += -I$(CUB_DIR)
 endif
-
-CAMP_LIB = -lcamp
 ifdef CAMP_DIR
    RAJA_OPT += -I$(CAMP_DIR)/include
-   CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
 endif
-RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
+RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
 
 # UMPIRE library configuration
-ifeq ($(MFEM_USE_UMPIRE),YES)
-   BASE_FLAGS = -std=c++14
-endif
 UMPIRE_DIR = @MFEM_DIR@/../umpire
 UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
-UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
+UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
 
 # MKL CPardiso library configuration
 MKL_CPARDISO_DIR ?=
@@ -557,35 +498,11 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
    -L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
    -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
 
-# MKL Pardiso library configuration
-MKL_PARDISO_DIR ?=
-MKL_LIBRARY_SUBDIR ?= lib
-MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
-MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-   -L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-   -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
-
 # PARELAG library configuration
 PARELAG_DIR = @MFEM_DIR@/../parelag
 PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
 PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
 
-# Enzyme configuration
-
-# If you want to enable automatic differentiation at compile time, use the
-# options below, adapted to your configuration. To be more flexible, we
-# recommend using the Enzyme plugin during link time optimization. One option is
-# to add your options to the global compiler/linker flags like
-#
-# BASE_FLAGS += -flto
-# CXX_XLINKER += -fuse-ld=lld -Wl,--lto-legacy-pass-manager\
-#                -Wl,-mllvm=-load=$(ENZYME_DIR)/LLDEnzyme-$(ENZYME_VERSION).so -Wl,
-#
-ENZYME_DIR ?= @MFEM_DIR@/../enzyme
-ENZYME_VERSION ?= 14
-ENZYME_OPT = -fno-experimental-new-pass-manager -Xclang -load -Xclang $(ENZYME_DIR)/ClangEnzyme-$(ENZYME_VERSION).so
-ENZYME_LIB = ""
-
 # If YES, enable some informational messages
 VERBOSE = NO
 

config/docker/Dockerfile

@@ -1,25 +0,0 @@
-FROM ghcr.io/mfem/mfem-ubuntu-base:latest as builder
-
-# docker build -t ghcr.io/mfem/mfem-ubuntu .
-
-COPY ./config/docker/spack.yaml /opt/mfem-env/spack.yaml
-RUN apt-get install -y python3 && \
-    cd /opt/mfem-env && \
-    . /opt/spack/share/spack/setup-env.sh && \
-    spack env activate . && \
-    spack env view regenerate
-
-FROM ubuntu:22.04
-
-COPY --from=builder /opt/view /opt/view
-COPY --from=builder /opt/mfem-view /opt/mfem-view
-
-RUN apt-get update && \
-    apt-get install -y unzip gfortran && \
-    apt-get install -y libcurl4-openssl-dev libssl-dev
-
-ENV PATH=$PATH:/opt/mfem-view/bin
-ENV DEBIAN_FRONTEND=noninteractive
-
-# The user will see the view on shell into the container
-WORKDIR /opt/mfem-view

config/docker/Dockerfile.base

@@ -1,47 +0,0 @@
-FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
-
-# docker build -f Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
-
-RUN apt-get update && \
-    apt-get install -y unzip gfortran && \
-    spack compiler find && \
-    apt-get install -y libcurl4-openssl-dev libssl-dev
-
-# /code is the working directory for code
-WORKDIR /code
-COPY . /code
-
-# This is for a spack environment/view to install from there
-RUN mkdir -p /opt/mfem-env \
-&&  (echo "spack:" \
-&&   echo "  view:" \
-&&   echo "    mfem:" \
-&&   echo "      root: /opt/mfem-view" \
-&&   echo "      link_type: copy" \
-&&   echo "  packages:" \
-&&   echo "    all:" \
-&&   echo "      target:" \
-&&   echo "      - x86_64_v3" \
-&&   echo "  config:" \
-&&   echo "    concretizer: clingo" \
-&&   echo "    compiler:" \
-&&   echo "      target:" \
-&&   echo "      - x86_64_v3" \
-&&   echo "    install_missing_compilers: true" \
-&&   echo "  concretization: together") > /opt/mfem-env/spack.yaml
-
-RUN cd /opt/mfem-env && \
-    . /opt/spack/share/spack/setup-env.sh && \
-    spack env activate . && \
-    spack develop --path /code mfem@master+examples+miniapps && \
-    spack add mfem@master+examples+miniapps && \
-    spack install
-
-# ensure mfem always on various paths
-RUN cd /opt/mfem-env && \
-    spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
-
-# Present the software install when we shell in
-# The view is at /opt/mfem-env/.spack-env/view
-WORKDIR /opt/software
-ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]

config/docker/README.md

@@ -1,209 +0,0 @@
-# mfem Docker
-
-We provide a [Dockerfile.base](Dockerfile.base) to build an ubuntu base image,
-and a [Dockerfile](Dockerfile) to build a smaller one with a multi-stage build.
-You can use this image for a demo of using mfem! 🎉️
-
-Updated containers are built and deployed on merges to the main branch and releases.
-If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
-
-## Usage
-
-We provide two containers, which you can either build or use directly from
-[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
-
- - `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
- - `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
-
-In the above, "ghcr.io" means "GitHub Container Registry" and
-is the [GitHub packages](https://github.com/features/packages) registry that supports
-Docker images and other OCI artifacts. 
-
-### Ubuntu
-
-> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
-
-Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
-so you don't need to build it. However, if you want to, you can do the following:
-
-```bash
-$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
-```
-
-Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
-below. Once you have built (or prefer to pull) you can shell into the container as follows:
-
-```bash
-$ docker run -it ghcr.io/mfem/mfem-ubuntu
-```
-
-This smaller image has a view where everything is installed.
-
-```bash
-$ ls
-bin  etc  include  lib  libexec  sbin  share  var
-```
-
- - Examples are in share/mfem/examples
- - Examples are in share/mfem/miniapps
-
-Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
-
-```bash
-$ ls include/ | grep mfem
-mfem
-mfem-performance.hpp
-mfem.hpp
-```
-
-And yes, this is the working directory when you shell into the container!
-You can find the examples here:
-
-
-```bash
-cd share/mfem/examples
-```
-
-Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
-we need:
-
-```bash
-export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
-```
-
-And then run:
-
-```bash
-$ ./ex0
-Options used:
-   --mesh ../data/star.mesh
-   --order 1
-Number of unknowns: 101
-   Iteration :   0  (B r, r) = 0.184259
-   Iteration :   1  (B r, r) = 0.102754
-   Iteration :   2  (B r, r) = 0.00558141
-   Iteration :   3  (B r, r) = 1.5247e-05
-   Iteration :   4  (B r, r) = 1.13807e-07
-   Iteration :   5  (B r, r) = 6.27231e-09
-   Iteration :   6  (B r, r) = 3.76268e-11
-   Iteration :   7  (B r, r) = 6.07423e-13
-   Iteration :   8  (B r, r) = 4.10615e-15
-Average reduction factor = 0.140201
-```
-
-You can also explore the "mini apps," also in share/mfem, but under miniapps.
-
-```bash
-# This is run from the examples directory
-$ cd ../miniapps
-```
-```bash
-$ ls
-CMakeLists.txt  common            meshing  nurbs        shifted  toys
-adjoint         electromagnetics  mtop     parelag      solvers
-autodiff        gslib             navier   performance  tools
-```
-
-And an example in "toys"
-
-```bash
-cd toys
-```
-```bash
-$ ./automata -no-vis
-Options used:
-   --num-steps 16
-   --rule 90
-   --no-visualization
-
-Rule:
- 111 110 101 100 011 010 001 000
-  0   1   0   1   1   0   1   0
-
-Applying rule...done.
-```
-
-Have fun! As a reminder, this container is ideal for developing your own
-applications that might use mfem, or having a nice environment to test out
-examples.
-
-
-### Ubuntu Base
-
-> Use this build for a development environment with spack and mfem
-
-This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base), 
-however you can build it locally too:
-
-```bash
-$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
-```
-
-To shell into the container:
-
-```bash
-$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
-```
-
-Change directory to the mfem environment, setup spack, and activate the environment:
-
-```bash
-source /opt/spack/share/spack/setup-env.sh
-cd /opt/mfem-env/
-spack env activate .
-```
-
-Note that this environment is installing to the view at `/opt/view`. Since the environment
-knows to install mfem from `/code` this means that you could make changes in the container (or bind
-`/code` to your container) and then update spack:
-
-```bash
-# Note that concretization takes a hot minute!
-$ spack install
-```
-
-And if you want to load mfem:
-
-```bash
-$ spack load mfem
-$ env | grep mfem
-```
-
-In this development container, you can find the examples and miniapps alongside
-mfem under `/code`:
-
-```bash
-cd /code/examples
-```
-```bash
-$ ./ex0
-```
-```console
-Options used:
-   --mesh ../data/star.mesh
-   --order 1
-Number of unknowns: 101
-   Iteration :   0  (B r, r) = 0.184259
-   Iteration :   1  (B r, r) = 0.102754
-   Iteration :   2  (B r, r) = 0.00558141
-   Iteration :   3  (B r, r) = 1.5247e-05
-   Iteration :   4  (B r, r) = 1.13807e-07
-   Iteration :   5  (B r, r) = 6.27231e-09
-   Iteration :   6  (B r, r) = 3.76268e-11
-   Iteration :   7  (B r, r) = 6.07423e-13
-   Iteration :   8  (B r, r) = 4.10615e-15
-Average reduction factor = 0.140201
-```
-
-This container is likely ideal for someone that wants to develop mfem itself.
-For other use cases, we recommend using the slimmer image. As an example,
-if you want to develop with your own code base (and mfem as is in the container) 
-you can bind to somewhere else in the container (e.g., src)
-
-```bash
-$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
-```
-
-In the above, we can pretend your project is in the present working directory (PWD) and we are
-binding to source. You can then use the mfem in the container for development, and if you
-want to distribute your library or app in a container, you can use the mfem container as the base.

config/docker/spack.yaml

@@ -1,11 +0,0 @@
-spack:
-  specs: [mfem@master+examples+miniapps]
-  view: 
-    mfem:
-      root: /opt/mfem-view 
-      link_type: copy
-  concretization: together
-  develop:
-    mfem:
-      path: /code
-      spec: mfem@master+examples+miniapps

config/get_hypre_version.cpp

@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //

config/get_mumps_version.cpp

@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //

config/githooks/pre-push

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -21,7 +21,6 @@ if [[ "${option}" == "--help" ]]; then
   echo "  --copyright"
   echo "  --license"
   echo "  --release"
-  echo "  --math"
   echo "  --style"
   echo "  --history"
   echo ""
@@ -36,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
 # copyright check
 copyright=true
 if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
-  if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^4]\|[^2].\)" > matches.txt; then
-    echo "Please update the following files to Copyright (c) 2010-2024:"
+  if git grep -l "^\(#\|//\).*\(\-2020\|\ 2010,\)" > matches.txt; then
+    echo "Please update the following files to Copyright (c) 2010-2021:"
     cat matches.txt
     copyright=false
   fi
@@ -64,18 +63,6 @@ if [[ "${option}" == "--release" || "${option}" == "" ]]; then
   fi
 fi
 
-# math in doxygen check
-math=true
-if [[ "${option}" == "--math" || "${option}" == "" ]]; then
-  if grep '\\f' -R doc/CodeDocumentation.dox mfem.hpp config general linalg mesh fem examples miniapps | grep -v '\\frac' | grep -v fem/picojson.h | grep -v config/githooks/pre-push > matches.txt
-  then
-    echo "Please use $..$ and \$\$..\$\$ for LaTeX formulas in the following"
-    echo "comments instead of the Doxygen style \f$..\f$, \f[..\f], etc."
-    cat matches.txt
-    math=false
-  fi
-fi
-
 # wrap-up
 code=0
 if ! $copyright ; then
@@ -90,10 +77,6 @@ if ! $release ; then
   echo "release check failed, unroll log for details"
   code=1
 fi
-if ! $math ; then
-  echo "math in doxygen check failed, unroll log for details"
-  code=1
-fi
 
 # `code-style` is not just a check, it will actually reformat the code if
 # necessary. This means that if one pushes while the repo is in dirty state

config/makefile

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -38,14 +38,14 @@ all: header config-mk
 MPI = $(MFEM_USE_MPI:NO=)
 GHV_CXX ?= $(MFEM_CXX)
 GHV = get_hypre_version
-GHV_FLAGS = $(MFEM_CXXFLAGS) $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
+GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
 SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
 SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
 SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
 MUMPS = $(MFEM_USE_MUMPS:NO=)
 GMV_CXX ?= $(MFEM_CXX)
 GMV = get_mumps_version
-GMV_FLAGS = $(MFEM_CXXFLAGS) $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
+GMV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
 
 $(GHV): $(SRC)$(GHV).cpp
 	$(call mfem-info, Determining HYPRE version ...)
@@ -110,4 +110,3 @@ config-mk:
 
 clean:
 	rm -f $(CONFIG_HPP) $(CONFIG_MK) sample-runs-build.log
-	rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out

config/sample-runs.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #
@@ -32,7 +32,7 @@ groups_serial=(
 '"examples"
    "Examples:"
    "examples"
-   "ex{,1,2,3}[0-9].cpp"'
+   "ex{,1,2}[0-9].cpp"'
 #   "ex1.cpp"'
 '"sundials"
    "SUNDIALS examples:"
@@ -83,13 +83,11 @@ groups_serial=(
 '"tools"
    "Tools miniapps:"
    "miniapps/tools"
-   "convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
-    lor-transfer.cpp"'
+   "convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp lor-transfer.cpp"'
 '"toys"
    "Toys miniapps:"
    "miniapps/toys"
-   "automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp
-    snake.cpp"'
+   "automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp snake.cpp"'
 '"convergence"
    "Convergence tests:"
    "tests/convergence"
@@ -100,7 +98,7 @@ groups_parallel=(
 '"examples"
    "Examples:"
    "examples"
-   "ex{,1,2,3}[0-9]p.cpp"'
+   "ex{,1,2}[0-9]p.cpp"'
 #   "ex1p.cpp"'
 '"sundials"
    "SUNDIALS examples:"
@@ -138,7 +136,7 @@ groups_parallel=(
 '"meshing"
    "Meshing miniapps:"
    "miniapps/meshing"
-   "pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
+   "pmesh-optimizer.cpp pminimal-surface.cpp"'
 '"electromagnetics"
    "Electromagnetics miniapps:"
    "miniapps/electromagnetics"
@@ -186,7 +184,7 @@ groups_all=(
 '"examples"
    "Examples:"
    "examples"
-   "ex\"{,1,2,3}[0-9]\"{,p}.cpp"'
+   "ex\"{,1,2}[0-9]\"{,p}.cpp"'
 '"sundials"
    "SUNDIALS examples:"
    "examples/sundials"
@@ -227,7 +225,7 @@ groups_all=(
    "Meshing miniapps:"
    "miniapps/meshing"
    "mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
-    {,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
+    {,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
 '"electromagnetics"
    "Electromagnetics miniapps:"
    "miniapps/electromagnetics"
@@ -240,8 +238,7 @@ groups_all=(
 '"gslib"
    "GSLIB miniapps:"
    "miniapps/gslib"
-   "field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp
-    schwarz_ex1p.cpp"'
+   "field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp schwarz_ex1p.cpp"'
 '"navier"
    "Navier miniapps:"
    "miniapps/navier"
@@ -261,13 +258,11 @@ groups_all=(
 '"tools"
    "Tools miniapps:"
    "miniapps/tools"
-   "convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
-    lor-transfer.cpp"'
+   "convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp lor-transfer.cpp"'
 '"toys"
    "Toys miniapps:"
    "miniapps/toys"
-   "automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp
-    snake.cpp"'
+   "automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp snake.cpp"'
 '"convergence"
    "Convergence tests:"
    "tests/convergence"
@@ -315,7 +310,7 @@ function extract_sample_runs()
    sruns=`grep -v "^//.*  mpirun .* ${app}" "${src}" |
           grep "^//.*  ${app}" |
           sed -e "s/.*  ${app}/${vg_app}/g"`
-   runs="${sruns}"$'\n'"${pruns}"
+   runs="${sruns}${pruns}"
    if [ "$skip_gen_meshes" == "yes" ]; then
       runs=`printf "%s" "$runs" | grep -v ".* -m .*\.gen"`
    fi
@@ -554,14 +549,15 @@ function go()
    local cmd_line="${1##+( )}"
    cmd_line="${cmd_line%%+( )}"
    shopt -u extglob
+   eval local cmd=(${cmd_line})
    local res=""
    echo $sep
    echo "<${group}>" "${cmd_line}"
    echo $sep
    if [ "${timing}" == "yes" ]; then
-      timed_run eval "${cmd_line}"
+      timed_run "${cmd[@]}"
    else
-      eval "${cmd_line}"
+      "${cmd[@]}"
    fi
    if [ "$?" -eq 0 ]; then
       res="${green}  OK  ${none}"

config/tconfig.hpp

@@ -1,4 +1,4 @@
-// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 // LICENSE and NOTICE for details. LLNL-CODE-806117.
 //

config/test.mk

@@ -1,4 +1,4 @@
-# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
 # at the Lawrence Livermore National Laboratory. All Rights reserved. See files
 # LICENSE and NOTICE for details. LLNL-CODE-806117.
 #

config/vcpkg/ports/metis-mfem/disable-programs.patch

@@ -1,8 +0,0 @@
---- a/CMakeLists.txt	Wed Dec 21 18:24:22 2016
-+++ b/CMakeLists.txt	Wed Dec 21 18:24:26 2016
-@@ -20,4 +20,4 @@
- # Recursively look for CMakeLists.txt in subdirs.
- add_subdirectory("include")
- add_subdirectory("libmetis")
--add_subdirectory("programs")
-+# add_subdirectory("programs")

config/vcpkg/ports/metis-mfem/enable-install.patch

@@ -1,15 +0,0 @@
---- a/CMakeLists.txt	Sat Mar 30 17:24:45 2013
-+++ b/CMakeLists.txt	Wed Dec 21 18:23:43 2016
-@@ -4,11 +4,7 @@
- set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
- set(SHARED FALSE CACHE BOOL "build a shared library")
- 
--if(MSVC)
--  set(METIS_INSTALL FALSE)
--else()
--  set(METIS_INSTALL TRUE)
--endif()
-+set(METIS_INSTALL TRUE)
- 
- # Configure libmetis library.
- if(SHARED)

config/vcpkg/ports/metis-mfem/fix-INT_MIN_define.patch

@@ -1,34 +0,0 @@
-diff --git a/include/metis.h b/include/metis.h
-index dc5406a..7732437 100644
---- a/include/metis.h
-+++ b/include/metis.h
-@@ -72,10 +72,14 @@ typedef __int64 int64_t;
- #define PRId64       "I64d"
- #define SCNd32       "ld"
- #define SCNd64       "I64d"
-+#ifdef _WIN32
-+#include <stdint.h>
-+#else
- #define INT32_MIN    ((int32_t)_I32_MIN)
- #define INT32_MAX    _I32_MAX
- #define INT64_MIN    ((int64_t)_I64_MIN)
- #define INT64_MAX    _I64_MAX
-+#endif
- #else
- #include <inttypes.h>
- #endif
-diff --git a/GKlib/gk_arch.h b/GKlib/gk_arch.h
-index 78b1431..7258763 100644
---- a/GKlib/gk_arch.h
-+++ b/GKlib/gk_arch.h
-@@ -32,8 +32,8 @@
- 
- 
- #ifdef __MSC__ 
--  #include "ms_stdint.h"
--  #include "ms_inttypes.h"
-+  #include <stdint.h>
-+  #include <inttypes.h>
-   #include "ms_stat.h"
- #else
- #ifndef SUNOS

config/vcpkg/ports/metis-mfem/fix-gklib-vs14-math.patch

@@ -1,11 +0,0 @@
---- a/GKlib/gk_arch.h	Wed Dec 21 18:34:18 2016
-+++ b/GKlib/gk_arch.h	Wed Dec 21 18:30:49 2016
-@@ -58,7 +58,7 @@
- #define PTRDIFF_MAX  INT64_MAX
- #endif
- 
--#ifdef __MSC__
-+#if defined(__MSC__) && (_MSC_VER < 1900)
- /* MSC does not have rint() function */
- #define rint(x) ((int)((x)+0.5))  
- 

config/vcpkg/ports/metis-mfem/fix-linux-build-error.patch

@@ -1,14 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index e94f050..b9613a7 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -1,7 +1,8 @@
- cmake_minimum_required(VERSION 2.8)
- project(METIS)
- 
--set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
-+set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/GKlib" CACHE PATH "path to GKlib")
-+
- set(SHARED FALSE CACHE BOOL "build a shared library")
- 
- set(METIS_INSTALL TRUE)

config/vcpkg/ports/metis-mfem/fix-metis-vs14-math.patch

@@ -1,11 +0,0 @@
---- a/libmetis/metislib.h	Sat Mar 30 17:24:45 2013
-+++ b/libmetis/metislib.h	Wed Dec 21 18:30:59 2016
-@@ -31,7 +31,7 @@
- #include <proto.h>
- 
- 
--#if defined(COMPILER_MSC)
-+#if defined(COMPILER_MSC) && (_MSC_VER < 1900)
- #if defined(rint)
-   #undef rint
- #endif

config/vcpkg/ports/metis-mfem/fix-runtime-install-destination.patch

@@ -1,10 +0,0 @@
---- a/libmetis/CMakeLists.txt	Sat Mar 30 17:24:45 2013
-+++ b/libmetis/CMakeLists.txt	Wed Dec 21 17:41:37 2016
-@@ -11,6 +11,6 @@
- if(METIS_INSTALL)
-   install(TARGETS metis
-     LIBRARY DESTINATION lib
--    RUNTIME DESTINATION lib
-+    RUNTIME DESTINATION bin
-     ARCHIVE DESTINATION lib)
- endif()