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..
947 changed files with 19749 additions and 62678 deletions
+8 -14
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@@ -31,7 +31,7 @@ install:
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
- cmake -H. -Bbuild
# -DCMAKE_BUILD_TYPE=Release
- cmake --build build --target metis -j 4
- cmake --build build
- set METIS_PATH=%cd%
- cd ..
@@ -40,7 +40,7 @@ install:
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild
- cmake --build build -j 4
- cmake --build build
- cmake --build build --target install
- cd ../..
@@ -49,20 +49,14 @@ install:
# MFEM
before_build:
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
build_script:
- cmake --build build_parallel --config Debug -j 4
# - cmake --build build_serial --config Release -j 4
# - cmake --build build_serial --target exec --config Release -j 4
- cmake --build build_shared_serial --config Release -j 4
- cmake --build build_shared_serial --target exec --config Release -j 4
- cmake --build build_parallel --config Release -j 4
- cmake --build build_serial --config Release -j 4
- cmake --build build_serial --target exec --config Release -j 4
after_build:
# - cd build_serial
# - ctest -C Release --output-on-failure
# - cd ..
- cd build_shared_serial
- cd build_serial
- ctest -C Release --output-on-failure
+11 -23
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -72,24 +72,14 @@ jobs:
codecov: NO
- target: opt
codecov: YES
- os: ubuntu-latest
target: dbg
config-opts: 'CPPFLAGS+=-Og'
- os: windows-latest
codecov: NO
- os: windows-latest
target: opt
mpi: par
config-opts: '-DBUILD_SHARED_LIBS=ON'
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: cmake
hypre-target: int32
# This option can be set to pass additional configuration options to
# the MFEM configuration command.
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
- os: ubuntu-latest
target: opt
codecov: NO
@@ -151,7 +141,7 @@ jobs:
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.1.4
uses: mpi4py/setup-mpi@v1.1.2
# Get Hypre through cache, or build it.
# Install will only run on cache miss.
@@ -165,7 +155,7 @@ jobs:
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.4
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -174,7 +164,7 @@ jobs:
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.4
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -193,7 +183,7 @@ jobs:
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.4
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
@@ -220,7 +210,7 @@ jobs:
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.4
uses: mfem/github-actions/build-mfem@v2.2
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
@@ -232,8 +222,8 @@ jobs:
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
config-options: ${{ matrix.config-opts }}
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
library-only: ${{ matrix.target == 'dbg' }}
# Run checks (and only checks) on debug targets
- name: checks
@@ -243,7 +233,7 @@ jobs:
# Note: 'tests' include the unit tests
- name: tests
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
if: matrix.build-system == 'make' && matrix.target == 'opt'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
@@ -266,15 +256,13 @@ jobs:
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && \
ctest --output-on-failure -C ${CTEST_CONFIG} || \
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.4
uses: mfem/github-actions/upload-coverage@v2.2
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
+4 -4
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -57,7 +57,7 @@ jobs:
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.4
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -72,14 +72,14 @@ jobs:
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.4
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.4
uses: mfem/github-actions/build-mfem@v2.2
with:
os: ${{ runner.os }}
target: opt
-70
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@@ -1,70 +0,0 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Sanitizer"
permissions:
actions: write
on:
push:
branches:
- master
- next
pull_request:
workflow_dispatch:
jobs:
Serial:
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
- name: MFEM Checkout
uses: actions/checkout@v3
with:
path: mfem
- name: MFEM Build
uses: mfem/github-actions/build-mfem@v2.4
with:
os: ${{ runner.os }}
target: opt
mpi: seq
hypre-dir: unused-hypre-dir
metis-dir: unused-metis-dir
mfem-dir: mfem
build-system: make
library-only: false
config-options:
CXX="clang++-14"
CXXFLAGS="-g -O1 -std=c++11
-fsanitize=address
-fno-omit-frame-pointer
-fsanitize-address-use-after-scope"
- name: MFEM Info
working-directory: mfem
run: make info
- name: MFEM Sanitize
working-directory: mfem
run:
ASAN_OPTIONS="detect_leaks=1,
strict_init_order=1,
strict_string_checks=1,
check_initialization_order=1,
detect_stack_use_after_return=1"
make test
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+7 -50
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@@ -21,15 +21,11 @@ CMakeFiles/
# Default install location
/mfem/
# Typical build directory
/build/
# Generated files in main directory, config/ and docs/
/deps.mk
config/_config.hpp
config/config.mk
config/sample-runs-build.log
config/user.cmake
config/user.mk
doc/CodeDocumentation.conf
doc/CodeDocumentation.html
@@ -113,12 +109,6 @@ examples/ex25p-*.*
examples/ex28_*
examples/ex28p_*
examples/flux.*
examples/dsol.*
examples/cond.*
examples/cond_j.*
examples/cond_mesh.*
examples/port_mesh.*
examples/port_mode.*
examples/amgx/ex1
examples/amgx/ex1p
@@ -128,9 +118,11 @@ examples/amgx/sol.gf
examples/amgx/mesh.*
examples/amgx/sol.*
examples/ginkgo/ex1
examples/ginkgo/refined.mesh
examples/ginkgo/sol.gf
examples/gingko/ex1
examples/gingko/refined.mesh
examples/gingko/sol.gf
examples/gingko/mesh.*
examples/gingko/sol.*
examples/hiop/ex9
examples/hiop/ex9p
@@ -156,8 +148,8 @@ examples/petsc/velocity.*
examples/petsc/elastic_energy.*
examples/petsc/mode_*
examples/pumi/ex[12]
examples/pumi/ex[16]p
examples/pumi/ex1
examples/pumi/ex[126]p
examples/pumi/refined.mesh
examples/pumi/sol.gf
examples/pumi/mesh.*
@@ -202,9 +194,6 @@ miniapps/gslib/field-diff
miniapps/gslib/field-interp
miniapps/gslib/findpts
miniapps/gslib/pfindpts
miniapps/gslib/schwarz_ex1
miniapps/gslib/schwarz_ex1p
miniapps/gslib/interpolated.gf
miniapps/meshing/mobius-strip
miniapps/meshing/klein-bottle
@@ -213,28 +202,21 @@ miniapps/meshing/twist
miniapps/meshing/mesh-explorer
miniapps/meshing/shaper
miniapps/meshing/extruder
miniapps/meshing/fit-node-position
miniapps/meshing/trimmer
miniapps/meshing/reflector
miniapps/meshing/mesh-optimizer
miniapps/meshing/pmesh-optimizer
miniapps/meshing/pmesh-fitting
miniapps/meshing/minimal-surface
miniapps/meshing/pminimal-surface
miniapps/meshing/polar-nc
miniapps/meshing/mesh-quality
miniapps/meshing/mobius-strip.mesh
miniapps/meshing/klein-bottle.mesh
miniapps/meshing/toroid-*.mesh
miniapps/meshing/twist-*.mesh
miniapps/meshing/mesh-explorer.mesh
miniapps/meshing/partitioning.txt
miniapps/meshing/mesh-explorer-visit*
miniapps/meshing/mesh-explorer-paraview/
miniapps/meshing/shaper.mesh
miniapps/meshing/extruder.mesh
miniapps/meshing/trimmer.mesh
miniapps/meshing/reflected.mesh
miniapps/meshing/optimized*
miniapps/meshing/perturbed*
miniapps/meshing/polar-nc.mesh
@@ -259,22 +241,17 @@ miniapps/navier/navier_tgv
miniapps/navier/navier_shear
miniapps/navier/navier_3dfoc
miniapps/navier/navier_turbchan
miniapps/navier/navier_cht
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_patch_ex1
miniapps/nurbs/nurbs_curveint
miniapps/nurbs/refined.mesh
miniapps/nurbs/mesh.*
miniapps/nurbs/sol.*
miniapps/nurbs/mode_*
miniapps/nurbs/Example1*
miniapps/nurbs/sin-fit.mesh
miniapps/nurbs/CurveInt
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -297,10 +274,8 @@ miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
miniapps/tools/get-values
miniapps/tools/check-tmop-metric
miniapps/tools/tmop-metric-magnitude
miniapps/toys/automata
miniapps/toys/life
@@ -330,28 +305,12 @@ miniapps/solvers/ParaView
miniapps/solvers/mesh.*
miniapps/solvers/sol.*
miniapps/hdiv-linear-solver/darcy
miniapps/hdiv-linear-solver/grad_div
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/multidomain/multidomain
miniapps/hooke/hooke
miniapps/dpg/diffusion
miniapps/dpg/pdiffusion
miniapps/dpg/convection-diffusion
miniapps/dpg/pconvection-diffusion
miniapps/dpg/acoustics
miniapps/dpg/pacoustics
miniapps/dpg/maxwell
miniapps/dpg/pmaxwell
miniapps/dpg/ParaView
miniapps/spde/generate_random_field
miniapps/spde/ParaView
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
@@ -364,8 +323,6 @@ tests/unit/tmop_pa_tests_*
tests/unit/ptmop_pa_tests_*
tests/unit/ceed_tests
tests/unit/debug_device_tests
tests/unit/parallel_in_serial.mesh
tests/unit/parallel_in_serial.gf
# Benchmark binaries
tests/benchmarks/bench_ceed
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+11 -7
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,10 +22,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -55,10 +57,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+6 -4
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -47,10 +47,12 @@ setup_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+12 -8
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,11 +35,13 @@ setup:
(
date
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
# try every 5 seconds; we may want to add a counter for the number of
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/mfem-data.lock'"
date
@@ -67,10 +69,12 @@ setup:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -4
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,14 +14,14 @@ stages:
- build_and_test
- report
opt_mpi_cuda_xl_16_1_1_12:
opt_mpi_cuda_xl_16_1_1_8:
variables:
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
extends: .build_and_test_on_lassen
opt_mpi_cuda_hypre_cuda_xl:
variables:
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
extends: .build_and_test_on_lassen
# Jobs report
+11 -13
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -51,8 +51,6 @@ cleanup:
script:
- echo "BUILD_ROOT=${BUILD_ROOT}"
- rm -rf "${BUILD_ROOT}" || true
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
- make -C "${CI_PROJECT_DIR}" distclean
report_baseline:
extends: [.on_quartz]
@@ -68,10 +66,12 @@ report_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -82,20 +82,18 @@ report_baseline:
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
fi
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
>> ${rundir}/pipeline.txt
# We create an autotest-email.html file, because that's how we signal
# that there was an error / diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
fi
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
+20 -15
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -27,39 +27,44 @@ allocate_resource:
timeout: 6h
# GitLab jobs for the Quartz machine at LLNL
debug_ser_gcc_10:
debug_ser_gcc_4_9_3:
variables:
SPEC: "%gcc@10.3.1 +debug~mpi"
SPEC: "%gcc@4.9.3 +debug~mpi"
extends: .build_and_test_on_quartz
debug_par_gcc_10:
debug_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +debug+mpi"
SPEC: "%gcc@6.1.0 +debug~mpi"
extends: .build_and_test_on_quartz
opt_ser_gcc_10:
debug_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 ~mpi"
SPEC: "%gcc@6.1.0 +debug+mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10:
opt_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1"
SPEC: "%gcc@6.1.0 ~mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10_sundials:
opt_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +sundials"
SPEC: "%gcc@6.1.0"
extends: .build_and_test_on_quartz
opt_par_gcc_10_petsc:
opt_par_gcc_6_1_0_sundials:
variables:
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
SPEC: "%gcc@6.1.0 +sundials"
extends: .build_and_test_on_quartz
opt_par_gcc_10_pumi:
opt_par_gcc_6_1_0_petsc:
variables:
SPEC: "%gcc@10.3.1 +pumi"
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
extends: .build_and_test_on_quartz
opt_par_gcc_6_1_0_pumi:
variables:
SPEC: "%gcc@6.1.0 +pumi"
extends: .build_and_test_on_quartz
# Release
+29 -16
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -42,34 +42,47 @@ fi
# post
mkdir ${artifacts_path}
status=0
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
if [[ -s ${glob_err} ]]; then
echo "ERROR during ${BASELINE_TEST} execution"
echo "Here is the ${glob_err} file content"
if [[ -s ${glob_err} ]]
then
echo "ERROR during ${BASELINE_TEST} execution";
echo "Here is the ${glob_err} file content";
cat ${glob_err}
cp ${glob_err} ${artifacts_path}/${glob_err}
status=1
fi
if [[ -f ${base_patch} ]]; then
exit 1;
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
then
echo "Something went WRONG in ${BASELINE_TEST}:";
echo "Either ${base_patch} or ${base_out} should exists";
exit 1;
elif [[ -f ${base_patch} ]]
then
echo "${BASELINE_TEST}: Differences found, patch generated"
cp ${base_patch} ${artifacts_path}/${base_patch}
elif [[ -f ${base_out} ]]; then
elif [[ -f ${base_out} ]]
then
echo "${BASELINE_TEST}: Differences found, replacement file generated"
cp ${base_out} ${artifacts_path}/${base_out}
fi
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
# base_diff won't even exist if there is no difference.
if [[ -f ${base_diff} ]]; then
if [[ -f ${base_diff} ]]
then
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
cat ${base_diff}
cp ${base_diff} ${artifacts_path}/${base_diff}
status=1
# We create a .err file, because that's how we signal that there was a diff.
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
fi
if [[ $status -eq 0 ]]; then
if [[ ! -s ${base_diff} ]]
then
echo "${BASELINE_TEST}: PASSED"
true
else
echo "${BASELINE_TEST}: FAILED"
false
fi
exit $status
-41
View File
@@ -1,41 +0,0 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Try to push to the remote 5 times. If the push fails, and the local and remote
# have diverged, then pull from the remote to merge changes, and try pushing
# again. If some other failure happens
for i in {1..5}; do
git push origin master && exit 0
# Wait for 20 seconds in case someone else is pushing to the remote
# concurrently
sleep 20
# Fetch any updates from the remote
git remote update
# Get the latest commit on the local branch
LOCAL=$(git rev-parse @)
# Get the latest commit on the remote
REMOTE=$(git rev-parse @{u})
# Get the common ancestor
BASE=$(git merge-base @ @{u})
# Have the local and remote diverged?
if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
git pull
if [[ $? == 0 ]]; then
continue
else
exit 1 # Something else went wrong trying to pull
fi
fi
done
exit 1 # Did not succeed in 5 attempts
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -32,7 +32,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -29,7 +29,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+22 -146
View File
@@ -8,159 +8,43 @@
https://mfem.org
Version 4.5.3 (development)
Version 4.5.1 (development)
===========================
- Added curve interpolation method for NURBS.
New and updated examples and miniapps
-------------------------------------
- Added a new example code, Example 36/36p, to demonstrate the solution of
the obstacle problem with a new finite element method.
- Added a new miniapp, Mesh Quality, for evaluating mesh quality using size,
skewness, and aspect-ratio computed from the Jacobian of the transformation.
- Added a new miniapp for interface and boundary fitting to implicit domains
defined using level-set functions. See miniapps/meshing/pmesh-fitting.cpp.
- Added a new miniapp for fitting of selected mesh nodes to specified positions,
while maintaining mesh quality. See miniapps/meshing/fit-node-position.cpp.
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
and parallel examples for diffusion, convection-diffusion, acoustics and
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
integrators are added in support of DPG systems: TraceIntegrator,
NormalTraceIntegrator and TangentTraceIntegrator.
- Added new SubMesh examples demonstrating source terms and boundary conditions
transferred from SubMesh objects.
- Added a miniapp for interpolation of NURBS.
- Added a new H(div) solvers miniapp in miniapps/hdiv-linear-solver,
demonstrating the use of a matrix-free saddle-point solver methodology,
suitable for high-order discretizations and for GPU acceleration. Examples
illustrating the solution of Darcy and grad-div problems are included.
- Added a random refinement option to the mesh-explorer miniapp to assist users
in experimenting with nonconforming meshes.
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
- Added a new parallel LOR transfer miniapp, miniapps/tools/plor-transfer, which
mirrors the functionality of the serial LOR transfer miniapp,
miniapps/tools/lor-transfer
Meshing improvements
--------------------
- Added support for free connectivity of NURBS patches allowing for more complex
patch configurations such as C-meshes. This is demonstrated in a new NURBS
miniapp.
- The edge to knot map for NURBS meshes can be determined automatically. It is no
longer needed to specify this in the NURBS mesh. A mesh in the NURBS miniapp
demonstrates this.
- Added new methods in the Mesh class to set and get attributes on NURBS patches
and patch boundaries.
- Added HIP support to the SUNDIALS interface.
- TMOP improvement: added asymptotically-balanced compound metrics 90, 94, 328,
338. Added the tmop-metric-magnitude tool for tracking how metrics change
under geometric perturbations.
Discretization improvements
---------------------------
- Face restriction operators for Nedelec and Raviart-Thomas finite element
spaces are now supported through the ConformingFaceRestriction class.
- SubMesh and ParSubMesh have been extended to support the transfer of
Nedelec and Raviart-Thomas finite element spaces.
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
- Added support for partial assembly on NURBS patches and NURBS patch sparse
matrix assembly. Patch matrix assembly includes the option to use reduced
approximate integration rules, computed by the newly implemented non-negative
least-squares (NNLS) solver.
- Added support for p-refined meshes in FindPointsGSLIB.
- Support for parallel transfer of H1 fields using the low-order refined (LOR)
transfer operators in L2ProjectionGridTransfer
Linear and nonlinear solvers
----------------------------
- Updated interface to MUMPS direct solver to support multiple right-hand
sides, block low-rank compression, builds using 64-bit integers, and other
improvements.
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
This interface provides a serial (OpenMP shared memory) version of Pardiso for
use with SparseMatrix. This complements the existing parallel (MPI distributed
memory) version already available through the CPardiso MFEM integration.
Integrations, testing and documentation
---------------------------------------
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
Miscellaneous
-------------
- Improved lambda body debugging with the addition of mfem::forall functions.
These functions can take the place of the MFEM_FORALL macros, which have been
preserved for backwards compatibility.
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
in the fem/integ/ subdirectory.
- FiniteElementSpace::GetFE has been updated to abort instead of returning NULL for
an empty partition.
Version 4.5.2, released on March 23, 2023
=========================================
- Added support for pyramids in non-conforming meshes. Currently only isotropic
refinement is supported in this case.
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
Discretization improvements
---------------------------
- TBD
Linear and nonlinear solvers
----------------------------
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
New and updated examples and miniapps
-------------------------------------
- TBD
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
domain boundary.
Integrations, testing and documentation
---------------------------------------
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- Added an option to auto-balance compound TMOP metrics.
- Fixed a bug in TMOP metric 301.
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
face-neighbor elements.
- Added support for pyramids in Gmsh meshes.
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection. See option 'D' in the menu.
- VisItDataCollection now correctly handles data collection names containing
Miscellaneous
-------------
- VisItDataCollection now correctly handles collection names containing
underscores.
- Added support for shared Windows builds with MSVC through CMake.
Developers note: this enhancement is facilitated by the addition of the macro
MFEM_EXPORT, see config.hpp for more details on its usage.
- The following integrations have updated minimum version requirements:
* RAJA >= 2022.10.3
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with
VisItDataCollection::SetPadDigitsRank().
API changes
-----------
@@ -168,14 +52,6 @@ API changes
have been deprecated and generate deprecation warnings if used. They will be
removed in a future release.
- The methods Mesh::GetFaceBaseGeometry and Mesh::GetFaceGeometryType have been
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
should be used instead.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with SetPadDigitsRank().
Version 4.5, released on October 22, 2022
=========================================
+21 -68
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -13,7 +13,6 @@
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
# Version 3.8 or newer is required for direct CUDA support.
cmake_minimum_required(VERSION 3.8)
message(STATUS "CMake version: ${CMAKE_VERSION}")
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
"Path to optional user configuration file.")
@@ -25,11 +24,8 @@ set(CMAKE_CXX_EXTENSIONS OFF)
# Load user settings before the defaults - this way the defaults will not
# overwrite the user set options. If the user has not set all options, we still
# have the defaults.
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
if (USER_CONFIG_LOADED)
set(USER_CONFIG_LOADED "LOADED")
endif()
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
include("${USER_CONFIG}" OPTIONAL)
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
@@ -57,7 +53,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.5.3)
set(${PROJECT_NAME}_VERSION 4.5.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -82,16 +78,12 @@ if (MFEM_USE_CONDUIT OR
# * find_package(PETSc REQUIRED)
set(XSDK_ENABLE_C ON)
endif()
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
if (MFEM_USE_STRUMPACK)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
if ((MFEM_USE_SUNDIALS OR
MFEM_USE_STRUMPACK OR
MFEM_USE_GINKGO OR
MFEM_USE_RAJA OR
MFEM_USE_UMPIRE) AND
# SUNDIALS, STRUMPACK, and Ginkgo require C++14:
if ((MFEM_USE_SUNDIALS OR MFEM_USE_STRUMPACK OR MFEM_USE_GINKGO) AND
("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14)
endif()
@@ -115,7 +107,10 @@ if (MFEM_USE_CUDA)
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
endif()
enable_language(CUDA)
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
set(CMAKE_CUDA_STANDARD 11)
if (MFEM_USE_GINKGO)
set(CMAKE_CUDA_STANDARD 14)
endif()
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CUDA_FLAGS "--expt-extended-lambda")
@@ -138,7 +133,8 @@ if (MFEM_USE_CUDA)
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
endif()
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
"CUDA flags set for MFEM" FORCE)
set(CUSPARSE_FOUND TRUE)
set(CUSPARSE_LIBRARIES "cusparse")
set(CUBLAS_FOUND TRUE)
@@ -187,23 +183,6 @@ else()
set(MFEM_DEBUG OFF)
endif()
# Shared build on Windows
if (WIN32 AND BUILD_SHARED_LIBS)
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
"Automatically export symbols for shared Windows DLL build")
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
# the build directory, so that the .exe files can find the .dll files at
# runtime:
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
# Note: CMake tests are run from the build-tree sub-directory where the test
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
# work fine.
# Not strictly necessary:
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
endif()
# AMD HIP
if (MFEM_USE_HIP)
if (HIP_ARCH)
@@ -317,9 +296,6 @@ if (MFEM_USE_SUNDIALS)
if (MFEM_USE_CUDA)
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
endif()
if (MFEM_USE_HIP)
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
endif()
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
endif()
@@ -336,7 +312,6 @@ endif()
if (MFEM_USE_MUMPS)
if (MFEM_USE_MPI)
find_package(MUMPS REQUIRED mumps_common pord)
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
else()
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
endif()
@@ -470,18 +445,12 @@ if (MFEM_USE_ADIOS2)
find_package(ADIOS2 REQUIRED)
endif()
# MKL CPardiso
if (MFEM_USE_MKL_CPARDISO)
if (MFEM_USE_MPI)
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
endif()
endif()
# MKL Pardiso
if (MFEM_USE_MKL_PARDISO)
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
endif()
# PARELAG
if (MFEM_USE_PARELAG)
find_package(PARELAG REQUIRED)
@@ -531,8 +500,8 @@ find_package(Threads REQUIRED)
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
@@ -550,7 +519,6 @@ list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
@@ -606,19 +574,7 @@ target_include_directories(mfem
PUBLIC
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
# The INSTALL_INTERFACE is handled below
${TPL_INCLUDE_DIRS})
if (MFEM_USE_MPI)
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
endif()
endif()
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
@@ -630,7 +586,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
endif()
# Generate configuration file in the build directory: config/_config.hpp.
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
configure_file(
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
"${PROJECT_BINARY_DIR}/config/_config.hpp")
@@ -742,15 +697,13 @@ add_subdirectory(doc)
message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
set(INSTALL_INCLUDE_DIR include
CACHE PATH "Relative path for installing header files.")
set(INSTALL_BIN_DIR bin
CACHE PATH "Relative path for installing the binaries.")
set(INSTALL_LIB_DIR lib
CACHE PATH "Relative path for installing the library.")
# other options: "share/mfem/cmake", "lib/mfem/cmake"
set(INSTALL_CMAKE_DIR lib/cmake/mfem
CACHE PATH "Relative path for installing cmake config files.")
target_include_directories(mfem BEFORE
target_include_directories(mfem
PUBLIC
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
@@ -762,9 +715,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
# Install the library
install(TARGETS ${PROJECT_NAME}
EXPORT ${PROJECT_NAME_UC}Targets
RUNTIME DESTINATION ${INSTALL_BIN_DIR}
LIBRARY DESTINATION ${INSTALL_LIB_DIR}
ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
DESTINATION ${INSTALL_LIB_DIR})
# Install the master headers
foreach(Header mfem.hpp mfem-performance.hpp)
@@ -802,8 +753,10 @@ endif()
# Install the configuration header files
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
${PROJECT_SOURCE_DIR}/config/config.hpp
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
RENAME config.hpp)
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
# Package the whole thing up nicely
+1 -3
View File
@@ -121,7 +121,6 @@ The MFEM source code has the following structure:
├── fem
│ ├── ceed
│ ├── fe
│ ├── integ
│ ├── lor
│ ├── moonolith
│ ├── qinterp
@@ -137,7 +136,6 @@ The MFEM source code has the following structure:
│ ├── common
│ ├── electromagnetics
│ ├── gslib
│ ├── hdiv-linear-solver
│ ├── hooke
│ ├── meshing
│ ├── mtop
@@ -211,7 +209,7 @@ device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
#### Utilities, building and documentation
+4 -8
View File
@@ -628,13 +628,9 @@ The specific libraries and their options are:
both MPI and hypre.
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
for CUDA.
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
for HIP.
URL: http://computing.llnl.gov/projects/sundials/sundials-software
URL: http://computation.llnl.gov/projects/sundials/sundials-software
Options: SUNDIALS_OPT, SUNDIALS_LIB.
Versions: SUNDIALS >= 5.0.0,
SUNDIALS >= 5.4.0 for CUDA support, and
SUNDIALS >= 5.7.0 for HIP support.
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
@@ -797,10 +793,10 @@ The specific libraries and their options are:
Versions: libCEED >= 0.10.
- RAJA (optional), used when MFEM_USE_RAJA = YES.
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
URL: https://github.com/LLNL/RAJA
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
Versions: RAJA >= 2022.10.3.
Versions: RAJA >= 0.14.0.
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
URL: https://bitbucket.org/zulianp/par_moonolith
+1 -1
View File
@@ -1,6 +1,6 @@
BSD 3-Clause License
Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
All rights reserved.
Redistribution and use in source and binary forms, with or without
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -55,8 +55,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
+59 -70
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -39,9 +39,6 @@
// Description of the git commit used to build MFEM.
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
#cmakedefine MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
#cmakedefine MFEM_USE_MPI
@@ -80,102 +77,97 @@
// Internal MFEM option: enable group/batch allocation for some small objects.
#cmakedefine MFEM_USE_MEMALLOC
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Enable MFEM functionality based on the SuiteSparse library.
#cmakedefine MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
#cmakedefine MFEM_USE_SUPERLU
#cmakedefine MFEM_USE_SUPERLU5
// Enable MFEM functionality based on the MUMPS library.
#cmakedefine MFEM_USE_MUMPS
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
// Enable MFEM functionality based on the STRUMPACK library.
#cmakedefine MFEM_USE_STRUMPACK
// Enable functionality based on the Ginkgo library.
// Enable functionality based on the Ginkgo library
#cmakedefine MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// Enable MFEM functionality based on the AmgX library
#cmakedefine MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable MFEM functionality based on the GnuTLS library
#cmakedefine MFEM_USE_GNUTLS
// Enable Sidre support.
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
#cmakedefine MFEM_USE_SIMD
// Enable FMS support.
#cmakedefine MFEM_USE_FMS
// Enable Conduit support.
#cmakedefine MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
#cmakedefine MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
#cmakedefine MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
#cmakedefine MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
#cmakedefine MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
#cmakedefine MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HIOP library.
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the GSLIB library
#cmakedefine MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
// Enable MFEM functionality based on the NetCDF library
#cmakedefine MFEM_USE_NETCDF
// Enable MFEM functionality based on the PETSc library
#cmakedefine MFEM_USE_PETSC
// Enable MFEM functionality based on the SLEPc library
#cmakedefine MFEM_USE_SLEPC
// Enable MFEM functionality based on the Sidre library
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes
#cmakedefine MFEM_USE_SIMD
// Enable MFEM functionality based on the FMS library
#cmakedefine MFEM_USE_FMS
// Enable MFEM functionality based on Conduit
#cmakedefine MFEM_USE_CONDUIT
// Enable MFEM functionality based on the PUMI library
#cmakedefine MFEM_USE_PUMI
// Enable MFEM functionality based on the Moonolith library
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HiOp library
#cmakedefine MFEM_USE_HIOP
// Build the GPU/CUDA-enabled version of the MFEM library.
// Requires a CUDA compiler (nvcc).
#cmakedefine MFEM_USE_CUDA
// Build the AMD GPU/HIP-enabled version of the MFEM library.
// Build the HIP-enabled version of the MFEM library.
// Requires a HIP compiler (hipcc).
#cmakedefine MFEM_USE_HIP
// Enable functionality based on the RAJA library.
// Enable MFEM functionality based on the RAJA library
#cmakedefine MFEM_USE_RAJA
// Enable functionality based on the OCCA library.
// Enable MFEM functionality based on the OCCA library
#cmakedefine MFEM_USE_OCCA
// Enable functionality based on the libCEED library.
// Enable MFEM functionality based on the libCEED library
#cmakedefine MFEM_USE_CEED
// Enable functionality based on the Caliper library.
#cmakedefine MFEM_USE_CALIPER
// Enable functionality based on the Algoim library.
#cmakedefine MFEM_USE_ALGOIM
// Enable functionality based on the Umpire library.
// Enable MFEM functionality based on the Umpire library
#cmakedefine MFEM_USE_UMPIRE
// Enable IO functionality based on the ADIOS2 library.
// Enable MFEM functionality based on the ADIOS2 library
#cmakedefine MFEM_USE_ADIOS2
// Enable MFEM functionality based on the Caliper library
#cmakedefine MFEM_USE_CALIPER
// Enable MFEM functionality based on the Algoim library
#cmakedefine MFEM_USE_ALGOIM
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Version of HYPRE used for building MFEM.
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
@@ -186,16 +178,13 @@
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
#cmakedefine MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
#cmakedefine MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
#cmakedefine MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
// Enable Enzyme for AD
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -16,7 +16,7 @@
include(MfemCmakeUtilities)
mfem_find_package(Algoim ALGOIM ALGOIM_DIR
"include;src" "algoim_quad.hpp"
"include" "algoim_quad.hpp"
"" ""
"Paths to headers required by Algoim."
"Libraries required by Algoim.")
"Paths to headers required by Algoim."
"Libraries required by Algoim.")
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -11
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
# we only need HDF5 if Conduit was built with HDF5 support
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
"Additional packages required by Conduit.")
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
# MFEM's FindHDF5.cmake is not used.
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
endif()
include(MfemCmakeUtilities)
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
ADD_COMPONENT relay
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
ADD_COMPONENT blueprint
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,27 +0,0 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - MKL_PARDISO_FOUND
# - MKL_PARDISO_LIBRARIES
# - MKL_PARDISO_INCLUDE_DIRS
if(NOT MKL_LIBRARY_DIR)
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
set(MKL_LIBRARY_DIR "lib/intel64")
endif()
include(MfemCmakeUtilities)
mfem_find_package(MKL_PARDISO MKL_PARDISO
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -18
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -11,9 +11,8 @@
# Sets the following variables:
# - MUMPS_FOUND
# - MUMPS_LIBRARIES
# - MUMPS_INCLUDE_DIRS
# - MUMPS_VERSION
# - MUMPS_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(MUMPS MUMPS MUMPS_DIR
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
"Libraries required by MUMPS."
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
${CMAKE_CURRENT_BINARY_DIR}/config
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
else()
message(FATAL_ERROR "Unable to determine MUMPS version.")
endif()
endif()
+6 -17
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,17 +14,11 @@
# - NETCDF_LIBRARIES
# - NETCDF_INCLUDE_DIRS
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
include(MfemCmakeUtilities)
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# We need to guard against the case where HDF5 was already found but without
# the HL extensions (in which case mfem_find_package will treat the package
@@ -41,11 +35,6 @@ mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
# The netcdf library will always be the first element of NETCDF_LIBRARIES
# and we need to insert after that library but before the hdf5 library, so
# position 1 is used
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
if (HDF5_C_LIBRARY_hdf5_hl)
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
if (NOT NetCDF_FIND_QUIETLY)
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
endif()
endif()
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
# is already added to NETCDF_LIBRARIES)
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+12 -22
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,27 +14,17 @@
# - RAJA_LIBRARIES
# - RAJA_INCLUDE_DIRS
if (RAJA_FOUND)
return()
include(MfemCmakeUtilities)
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
"Paths to headers required by RAJA." "Libraries required by RAJA.")
if (NOT RAJA_CONFIG_CMAKE)
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
endif()
message(STATUS "Looking for RAJA ...")
if (RAJA_DIR)
message(STATUS " in RAJA_DIR = ${RAJA_DIR}")
find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
endif()
if (NOT RAJA_FOUND)
message(STATUS " in standard CMake locations")
find_package(RAJA CONFIG)
endif()
if (RAJA_FOUND)
set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
message(STATUS
"Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
else()
set(msg STATUS)
if (RAJA_FIND_REQUIRED)
set(msg FATAL_ERROR)
if (EXISTS "${RAJA_CONFIG_CMAKE}")
include("${RAJA_CONFIG_CMAKE}")
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
message(FATAL_ERROR
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
endif()
message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
endif()
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -3
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
ADD_COMPONENT NVector_Cuda
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
ADD_COMPONENT NVector_Hip
"include" nvector/nvector_hip.h "lib" sundials_nvechip
ADD_COMPONENT NVector_ParHyp
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
ADD_COMPONENT NVector_Parallel
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
ADD_COMPONENT NVector_MPIPlusX
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -19
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,23 +14,6 @@
# - UMPIRE_LIBRARIES
# - UMPIRE_INCLUDE_DIRS
if (NOT umpire_DIR AND UMPIRE_DIR)
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
endif()
message(STATUS "Looking for UMPIRE ...")
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
message(STATUS " umpire_DIR = ${umpire_DIR}")
find_package(umpire CONFIG)
find_package(umpire REQUIRED CONFIG)
set(UMPIRE_FOUND ${umpire_FOUND})
set(UMPIRE_LIBRARIES "umpire")
if (UMPIRE_FOUND)
message(STATUS
"Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
else()
set(msg STATUS)
if (UMPIRE_FIND_REQUIRED)
set(msg FATAL_ERROR)
endif()
message(${msg}
"UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
endif()
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+55 -34
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -103,6 +103,25 @@ macro(add_mfem_examples EXE_SRCS)
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
target_link_libraries(${EXE_NAME} mfem)
if (MFEM_USE_MPI)
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
# Language-specific include directories:
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endforeach(SRC_FILE)
endmacro()
@@ -153,6 +172,26 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
if (EXTRA_DEFINES_LIST)
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
endif()
# Handle the MPI separately
if (MFEM_USE_MPI)
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endmacro()
@@ -397,9 +436,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
break()
endif()
endforeach()
if (Required AND NOT ${ReqPack}_FOUND)
if (${Required} AND NOT ${ReqPack}_FOUND)
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
endif()
endif()
endif()
@@ -465,18 +504,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
endif()
get_target_property(IsImported ${TargetName} IMPORTED)
if (IsImported)
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
if (NOT ImportConfig)
set(ImportConfig RELEASE)
list(FIND ImpConfigs ${ImportConfig} _Index)
if (_Index EQUAL -1)
list(GET ImpConfigs 0 ImportConfig)
endif()
endif()
set(ImportConfigSuffix "_${ImportConfig}")
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
list(FIND ImpConfigs ${ImportConfig} _Index)
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
set(ImportConfig "NO_CONFIG")
set(ImportConfigSuffix "")
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
@@ -494,8 +529,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
else()
# Set _Pack_LIBS from the target properties for ImportConfig
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
INTERFACE_LINK_LIBRARIES)
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
get_target_property(_value ${TargetName} ${_prop})
if (_value)
list(APPEND _Pack_LIBS ${_value})
@@ -746,7 +780,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
endforeach()
endif()
set(AddInterfaceLinkLibs TRUE)
if ("${type}" STREQUAL "STATIC_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
@@ -768,27 +801,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
# The INTERFACE_LINK_LIBRARIES property is handled below.
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
set(AddInterfaceLinkLibs FALSE)
endif()
if (AddInterfaceLinkLibs)
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
if (Libs)
foreach(Lib ${Libs})
if (NOT (TARGET ${Lib}))
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
endif()
list(APPEND LinkOpts "${Lib}")
else()
mfem_get_target_options(${Lib} COpts LOpts)
list(APPEND CompileOpts ${COpts})
@@ -796,6 +813,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
endif()
endforeach()
endif()
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
endif()
# Other potentially relevant properties:
@@ -819,9 +843,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
endfunction(mfem_get_target_options)
@@ -873,7 +894,7 @@ function(mfem_export_mk_files)
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
endforeach()
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
+3 -22
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,30 +30,11 @@
#endif
// Windows specific options
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
#ifdef _WIN32
#ifndef _USE_MATH_DEFINES
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
#define _USE_MATH_DEFINES
#endif
// Macro MFEM_EXPORT: this macro is used when declaring exported global
// variables and static class variables in public header files, e.g.:
// extern MFEM_EXPORT Geometry Geometries;
// static MFEM_EXPORT Device device_singleton;
// In cases where a class contains multiple static variables, instead of marking
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
// e.g.:
// class MFEM_EXPORT MemoryManager ...
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
// variable that needs MFEM_EXPORT does not have it. However, builds with
// optional external libraries are not tested and may require separate checks to
// determine the necessity of MFEM_EXPORT.
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
#ifdef mfem_EXPORTS
#define MFEM_EXPORT __declspec(dllexport)
#else
#define MFEM_EXPORT __declspec(dllimport)
#endif
#else
#define MFEM_EXPORT
#endif
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
// the following macro allows us to get M_PI and some needed functions, e.g.
+17 -23
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,18 +30,15 @@
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
// The absolute path of the MFEM source prefix.
// The absolute path of the MFEM source prefix
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
// The absolute path of the MFEM installation prefix.
// The absolute path of the MFEM installation prefix
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
// Description of the git commit used to build MFEM.
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
// #define MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
// #define MFEM_USE_MPI
@@ -91,7 +88,7 @@
// Enable MFEM functionality based on the SuiteSparse library.
// #define MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
// Enable MFEM functionality based on the SuperLU library.
// #define MFEM_USE_SUPERLU
// #define MFEM_USE_SUPERLU5
@@ -102,40 +99,40 @@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
// Enable MFEM features based on the Ginkgo library.
// Enable MFEM features based on the Ginkgo library
// #define MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// #define MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable secure socket streams based on the GNUTLS library
// #define MFEM_USE_GNUTLS
// Enable Sidre support.
// Enable Sidre support
// #define MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
// Enable the use of SIMD in the high performance templated classes
// #define MFEM_USE_SIMD
// Enable FMS support.
// Enable FMS support
// #define MFEM_USE_FMS
// Enable Conduit support.
// Enable Conduit support
// #define MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
// Enable functionality based on the NetCDF library (reading CUBIT files)
// #define MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
// Enable functionality based on the PETSc library
// #define MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
// Enable functionality based on the SLEPc library
// #define MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
// #define MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
// Enable MFEM functionality based on the PUMI library
// #define MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
@@ -144,7 +141,7 @@
// Enable MFEM functionality based on the HIOP library.
// #define MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the GSLIB library
// #define MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
@@ -186,13 +183,10 @@
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
// #define MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
// #define MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
// #define MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
+1 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -57,7 +57,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
+12 -13
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
endif()
# MFEM options. Set to mimic the default "defaults.mk" file.
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
@@ -60,7 +59,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
@@ -135,18 +133,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
"Additional packages required by ParMETIS.")
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
"Path to the SuperLU_DIST library.")
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
"LAPACK" "BLAS" CACHE STRING
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
"Additional packages required by SuperLU_DIST.")
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
"Path to the MUMPS library.")
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
# Packages required by MUMPS, depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
"Additional packages required by MUMPS.")
# If the MPI package does not find all required Fortran libraries:
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -229,16 +225,19 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
# If RAJA is built with external CAMP:
# set(RAJA_REQUIRED_PACKAGES "camp"
# CACHE STRING "Packages that RAJA depends on.")
# set(camp_DIR "${MFEM_DIR}/../camp/lib/cmake/camp"
# CACHE PATH "Path to CAMP CMake files.")
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
set(ALGOIM_REQUIRED_PACKAGES "BLITZ" CACHE STRING
"Packages that ALGOIM depends on.")
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
+8 -28
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
# gfx900, gfx1010, etc.
HIP_ARCH = gfx900
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
HIP_XCOMPILER =
HIP_XLINKER = -Wl,
@@ -160,7 +160,6 @@ MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_MKL_PARDISO = NO
MFEM_USE_MOONOLITH = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
@@ -267,9 +266,6 @@ endif
ifeq ($(MFEM_USE_CUDA),YES)
SUNDIALS_LIB += -lsundials_nveccuda
endif
ifeq ($(MFEM_USE_HIP),YES)
SUNDIALS_LIB += -lsundials_nvechip
endif
# If SUNDIALS was built with KLU:
# MFEM_USE_SUITESPARSE = YES
@@ -288,10 +284,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
-lsuperlu_dist_5.1.0
else
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
-lsuperlu_dist $(LAPACK_LIB)
-lsuperlu_dist -lblas
endif
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
@@ -315,7 +311,7 @@ MPI_FORTRAN_LIB = -lmpifort
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
MUMPS_OPT = -I$(MUMPS_DIR)/include
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
@@ -488,6 +484,7 @@ ifdef GOTCHA_DIR
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
endif
# BLITZ library configuration
BLITZ_DIR = @MFEM_DIR@/../blitz
BLITZ_OPT = -I$(BLITZ_DIR)/include
@@ -509,29 +506,20 @@ CEED_OPT = -I$(CEED_DIR)/include
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
# RAJA library configuration
ifeq ($(MFEM_USE_RAJA),YES)
BASE_FLAGS = -std=c++14
endif
RAJA_DIR = @MFEM_DIR@/../raja
RAJA_OPT = -I$(RAJA_DIR)/include
ifdef CUB_DIR
RAJA_OPT += -I$(CUB_DIR)
endif
CAMP_LIB = -lcamp
ifdef CAMP_DIR
RAJA_OPT += -I$(CAMP_DIR)/include
CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
endif
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
# UMPIRE library configuration
ifeq ($(MFEM_USE_UMPIRE),YES)
BASE_FLAGS = -std=c++14
endif
UMPIRE_DIR = @MFEM_DIR@/../umpire
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
# MKL CPardiso library configuration
MKL_CPARDISO_DIR ?=
@@ -542,14 +530,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# MKL Pardiso library configuration
MKL_PARDISO_DIR ?=
MKL_LIBRARY_SUBDIR ?= lib
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# PARELAG library configuration
PARELAG_DIR = @MFEM_DIR@/../parelag
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
+2
View File
@@ -19,7 +19,9 @@ RUN apt-get update && \
apt-get install -y libcurl4-openssl-dev libssl-dev
ENV PATH=$PATH:/opt/mfem-view/bin
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
ENV DEBIAN_FRONTEND=noninteractive
# The user will see the view on shell into the container
WORKDIR /opt/mfem-view
ENTRYPOINT ["/bin/bash"]
+6 -6
View File
@@ -34,14 +34,14 @@ RUN cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack develop --path /code mfem@master+examples+miniapps && \
spack add mfem@master+examples+miniapps && \
spack install
spack add mfem@master+examples+miniapps # && \
# spack install
# ensure mfem always on various paths
RUN cd /opt/mfem-env && \
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
#RUN cd /opt/mfem-env && \
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Present the software install when we shell in
# The view is at /opt/mfem-env/.spack-env/view
WORKDIR /opt/software
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
#WORKDIR /opt/software
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
+46 -108
View File
@@ -7,31 +7,21 @@ You can use this image for a demo of using mfem! 🎉️
Updated containers are built and deployed on merges to the main branch and releases.
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
## Usage
### Usage
We provide two containers, which you can either build or use directly from
[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
- `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
- `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
In the above, "ghcr.io" means "GitHub Container Registry" and
Here is how to build the container. Note that we build so it belongs to the same
namespace as the repository here. "ghcr.io" means "GitHub Container Registry" and
is the [GitHub packages](https://github.com/features/packages) registry that supports
Docker images and other OCI artifacts.
### Ubuntu
> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
so you don't need to build it. However, if you want to, you can do the following:
Docker images and other OCI artifacts. From the root of the repository:
```bash
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
below. Once you have built (or prefer to pull) you can shell into the container as follows:
### Shell Ubuntu
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu
@@ -47,13 +37,39 @@ bin etc include lib libexec sbin share var
- Examples are in share/mfem/examples
- Examples are in share/mfem/miniapps
Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
You can read more about interaction with these examples and miniapps below.
### Shell Ubuntu Base
To shell into the container:
```bash
$ ls include/ | grep mfem
mfem
mfem-performance.hpp
mfem.hpp
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Off the bat, you can see mfem libraries are in your path so you can jump into development:
```bash
env | grep mfem
```
```bash
PKG_CONFIG_PATH=/opt/mfem-env/.spack-env/view/lib/pkgconfig:/opt/mfem-env/.spack-env/view/share/pkgconfig:/opt/mfem-env/.spack-env/view/lib64/pkgconfig
PWD=/opt/mfem-env
MANPATH=/opt/mfem-env/.spack-env/view/share/man:/opt/mfem-env/.spack-env/view/man:
CMAKE_PREFIX_PATH=/opt/mfem-env/.spack-env/view
SPACK_ENV=/opt/mfem-env
ACLOCAL_PATH=/opt/mfem-env/.spack-env/view/share/aclocal
LD_LIBRARY_PATH=/opt/mfem-env/.spack-env/view/lib:/opt/mfem-env/.spack-env/view/lib64
PATH=/opt/mfem-env/.spack-env/view/bin:/opt/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
```
#### Examples and MiniApps
If you want to develop a tool that _uses_ mfem, you can find the built libraries in:
```
$ ls /opt/mfem-env/.spack-env/view/
bin etc include lib libexec sbin share var
```
And yes, this is the working directory when you shell into the container!
@@ -63,16 +79,6 @@ You can find the examples here:
```bash
cd share/mfem/examples
```
Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
we need:
```bash
export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
```
And then run:
```bash
$ ./ex0
Options used:
@@ -91,6 +97,7 @@ Number of unknowns: 101
Average reduction factor = 0.140201
```
Try running a few, and look at the associated .cpp file for the source code!
You can also explore the "mini apps," also in share/mfem, but under miniapps.
```bash
@@ -123,87 +130,18 @@ Rule:
Applying rule...done.
```
Have fun! As a reminder, this container is ideal for developing your own
applications that might use mfem, or having a nice environment to test out
examples.
Have fun!
### Ubuntu Base
> Use this build for a development environment with spack and mfem
This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
however you can build it locally too:
#### Your own App
If you want to develop with your own code base
(and mfem as is in the container) you can bind to somewhere else in the container (e.g., src)
```bash
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Change directory to the mfem environment, setup spack, and activate the environment:
```bash
source /opt/spack/share/spack/setup-env.sh
cd /opt/mfem-env/
spack env activate .
```
Note that this environment is installing to the view at `/opt/view`. Since the environment
knows to install mfem from `/code` this means that you could make changes in the container (or bind
`/code` to your container) and then update spack:
```bash
# Note that concretization takes a hot minute!
$ spack install
```
And if you want to load mfem:
```bash
$ spack load mfem
$ env | grep mfem
```
In this development container, you can find the examples and miniapps alongside
mfem under `/code`:
```bash
cd /code/examples
```
```bash
$ ./ex0
```
```console
Options used:
--mesh ../data/star.mesh
--order 1
Number of unknowns: 101
Iteration : 0 (B r, r) = 0.184259
Iteration : 1 (B r, r) = 0.102754
Iteration : 2 (B r, r) = 0.00558141
Iteration : 3 (B r, r) = 1.5247e-05
Iteration : 4 (B r, r) = 1.13807e-07
Iteration : 5 (B r, r) = 6.27231e-09
Iteration : 6 (B r, r) = 3.76268e-11
Iteration : 7 (B r, r) = 6.07423e-13
Iteration : 8 (B r, r) = 4.10615e-15
Average reduction factor = 0.140201
```
This container is likely ideal for someone that wants to develop mfem itself.
For other use cases, we recommend using the slimmer image. As an example,
if you want to develop with your own code base (and mfem as is in the container)
you can bind to somewhere else in the container (e.g., src)
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
```
In the above, we can pretend your project is in the present working directory (PWD) and we are
binding to source. You can then use the mfem in the container for development, and if you
want to distribute your library or app in a container, you can use the mfem container as the base.
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+3 -3
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
# copyright check
copyright=true
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^3]\|[^2].\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2023:"
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2022:"
cat matches.txt
copyright=false
fi
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -3
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -138,7 +138,7 @@ groups_parallel=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
"pmesh-optimizer.cpp pminimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
@@ -227,7 +227,7 @@ groups_all=(
"Meshing miniapps:"
"miniapps/meshing"
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
-48
View File
@@ -1,48 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
6
1 3 0 1 4 3
1 3 2 3 6 5
1 2 3 4 8
1 2 4 7 8
1 2 7 6 8
1 2 6 3 8
boundary
8
1 1 0 1
2 1 1 4
3 1 4 7
4 1 7 6
5 1 6 5
6 1 5 2
7 1 2 3
8 1 3 0
vertices
9
2
0.5 0
1 0
0 0.5
0.5 0.5
1 0.5
0 1
0.5 1
1 1
0.75 0.75
-44
View File
@@ -1,44 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
3
1 3 0 1 4 3
1 3 2 3 6 5
1 3 3 4 7 6
boundary
8
1 1 0 1
2 1 1 4
3 1 4 7
4 1 7 6
5 1 6 5
6 1 5 2
7 1 2 3
8 1 3 0
vertices
8
2
0.5 0
1 0
0 0.5
0.5 0.5
1 0.5
0 1
0.5 1
1 1
-322
View File
@@ -1,322 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
# PYRAMID = 7
#
dimension
2
elements
26
1 2 1 18 0
1 3 1 3 19 18
2 3 3 6 20 19
1 3 6 9 21 20
2 3 9 12 22 21
1 3 12 15 23 22
2 2 23 15 24
1 2 1 4 3
2 3 4 7 6 3
1 3 7 10 9 6
2 3 10 13 12 9
1 3 13 16 15 12
2 3 16 25 24 15
1 3 2 5 4 1
1 3 5 8 7 4
1 3 8 11 10 7
1 3 11 14 13 10
1 3 14 17 16 13
1 2 25 16 17
1 3 18 19 27 26
2 3 19 20 28 27
1 3 20 21 29 28
2 3 21 22 30 29
1 3 22 23 31 30
2 3 23 24 32 31
1 3 24 25 33 32
boundary
18
1 1 28 27
2 1 30 29
3 1 32 31
4 1 0 1
4 1 1 2
4 1 2 5
4 1 5 8
4 1 8 11
4 1 11 14
4 1 14 17
4 1 17 25
4 1 25 33
4 1 33 32
4 1 31 30
4 1 29 28
4 1 27 26
4 1 26 18
4 1 18 0
vertices
34
nodes
FiniteElementSpace
FiniteElementCollection: H1_2D_P3
VDim: 2
Ordering: 1
0 0
0.53125 0
1 0
0.53125 0.09375
0.5625 0.09375
1 0.09375
0.53125 0.21875
0.6875 0.21875
1 0.1875
0.53125 0.25
0.71875 0.25
1 0.25
0.53125 0.375
0.84375 0.375
1 0.34375
0.53125 0.40625
0.875 0.40625
1 0.40625
0 0.53125
0.09375 0.53125
0.21875 0.53125
0.25 0.53125
0.375 0.53125
0.40625 0.53125
0.53125 0.53125
1 0.53125
0 1
0.09375 1
0.21875 1
0.25 1
0.375 1
0.40625 1
0.53125 1
1 1
0.33175106835972 0.094168845750364
0.094168845750364 0.33175106835972
-5.1759634627347e-17 0.14683388869532
6.5255471622478e-17 0.38441611130468
0.14683388869532 6.0713766400335e-17
0.38441611130468 8.2458945395444e-19
0.53125 0.025911862710939
0.53125 0.067838137289061
0.34721731046049 0.13433915461926
0.13433915461926 0.34721731046049
0.025911862710939 0.53125
0.067838137289061 0.53125
0.53125 0.12829915028125
0.53125 0.18420084971875
0.39979807890035 0.24774225329947
0.24774225329947 0.39979807890035
0.12829915028125 0.53125
0.18420084971875 0.53125
0.53125 0.22738728757031
0.53125 0.24136271242969
0.41294327101031 0.27609302796952
0.27609302796952 0.41294327101031
0.22738728757031 0.53125
0.24136271242969 0.53125
0.53125 0.28454915028125
0.53125 0.34045084971875
0.46552403945017 0.38949612664974
0.38949612664974 0.46552403945017
0.28454915028125 0.53125
0.34045084971875 0.53125
0.53125 0.38363728757031
0.53125 0.39761271242969
0.47866923156014 0.41784690131979
0.41784690131979 0.47866923156014
0.38363728757031 0.53125
0.39761271242969 0.53125
0.53125 0.44079915028125
0.53125 0.49670084971875
0.44079915028125 0.53125
0.49670084971875 0.53125
0.53988728757031 0.025911862710939
0.55386271242969 0.067838137289061
0.53988728757031 0.09375
0.55386271242969 0.09375
0.59704915028125 0.12829915028125
0.65295084971875 0.18420084971875
0.57443643785157 0.21875
0.64431356214843 0.21875
0.69613728757031 0.22738728757031
0.71011271242969 0.24136271242969
0.58307372542188 0.25
0.66692627457812 0.25
0.75329915028125 0.28454915028125
0.80920084971875 0.34045084971875
0.61762287570313 0.375
0.75737712429687 0.375
0.85238728757031 0.38363728757031
0.86636271242969 0.39761271242969
0.62626016327344 0.40625
0.77998983672656 0.40625
0.90954915028125 0.44079915028125
0.96545084971875 0.49670084971875
0.6608093135547 0.53125
0.8704406864453 0.53125
1 0.025911862710939
1 0.067838137289061
0.68342202598438 0.09375
0.87907797401562 0.09375
0.6608093135547 0
0.8704406864453 0
1 0.11966186271094
1 0.16158813728906
0.77387287570313 0.21011271242969
0.91362712429687 0.19613728757031
1 0.20477457514063
1 0.23272542485937
0.79648558813282 0.25
0.92226441186718 0.25
1 0.27591186271094
1 0.31783813728906
0.88693643785157 0.36636271242969
0.95681356214843 0.35238728757031
1 0.36102457514063
1 0.38897542485937
0.90954915028125 0.40625
0.96545084971875 0.40625
1 0.44079915028125
1 0.49670084971875
0.09375 0.6608093135547
0.09375 0.8704406864453
0.025911862710939 1
0.067838137289061 1
0 0.6608093135547
0 0.8704406864453
0.21875 0.6608093135547
0.21875 0.8704406864453
0.12829915028125 1
0.18420084971875 1
0.25 0.6608093135547
0.25 0.8704406864453
0.22738728757031 1
0.24136271242969 1
0.375 0.6608093135547
0.375 0.8704406864453
0.28454915028125 1
0.34045084971875 1
0.40625 0.6608093135547
0.40625 0.8704406864453
0.38363728757031 1
0.39761271242969 1
0.53125 0.6608093135547
0.53125 0.8704406864453
0.44079915028125 1
0.49670084971875 1
1 0.6608093135547
1 0.8704406864453
0.6608093135547 1
0.8704406864453 1
0.14782497614169 0.14782497614169
0.3364183509774 0.10629113008478
0.3439701728879 0.12590539815918
0.10629113008478 0.3364183509774
0.12590539815918 0.3439701728879
0.36175027742635 0.16568300020856
0.38526511193449 0.21639840771017
0.16568300020856 0.36175027742635
0.21639840771017 0.38526511193449
0.40343132064181 0.2555782146968
0.40931002926885 0.2682570665722
0.2555782146968 0.40343132064181
0.2682570665722 0.40931002926885
0.42747623797617 0.30743687355882
0.45099107248431 0.35815228106044
0.30743687355882 0.42747623797617
0.35815228106044 0.45099107248431
0.46915728119164 0.39733208804706
0.47503598981867 0.41001093992246
0.39733208804706 0.46915728119164
0.41001093992246 0.47503598981867
0.47232443490112 0.47232443490112
0.54166666666667 0.0625
0.57886271242969 0.12829915028125
0.61931356214843 0.18420084971875
0.54943643785157 0.12829915028125
0.56488728757031 0.18420084971875
0.65056356214843 0.22738728757031
0.66067627457812 0.24136271242969
0.57682372542188 0.22738728757031
0.58068643785157 0.24136271242969
0.69192627457812 0.28454915028125
0.73237712429687 0.34045084971875
0.59262287570313 0.28454915028125
0.60807372542188 0.34045084971875
0.76362712429687 0.38363728757031
0.77373983672656 0.39761271242969
0.62001016327344 0.38363728757031
0.62387287570313 0.39761271242969
0.80498983672656 0.44079915028125
0.8454406864453 0.49670084971875
0.6358093135547 0.44079915028125
0.65126016327344 0.49670084971875
0.87282797401562 0.025911862710939
0.8766906864453 0.067838137289061
0.6670593135547 0.025911862710939
0.67717202598438 0.067838137289061
0.88862712429687 0.12204915028125
0.90407797401562 0.16783813728906
0.70842202598438 0.12591186271094
0.74887287570313 0.17795084971875
0.91601441186718 0.21102457514063
0.91987712429687 0.23511271242969
0.78012287570313 0.22113728757031
0.79023558813282 0.23897542485937
0.93181356214843 0.27829915028125
0.94726441186718 0.32408813728906
0.82148558813282 0.28216186271094
0.86193643785157 0.33420084971875
0.95920084971875 0.36727457514063
0.96306356214843 0.39136271242969
0.89318643785157 0.37738728757031
0.90329915028125 0.39522542485937
0.95833333333333 0.44791666666667
0.025911862710939 0.6608093135547
0.067838137289061 0.6608093135547
0.025911862710939 0.8704406864453
0.067838137289061 0.8704406864453
0.12829915028125 0.6608093135547
0.18420084971875 0.6608093135547
0.12829915028125 0.8704406864453
0.18420084971875 0.8704406864453
0.22738728757031 0.6608093135547
0.24136271242969 0.6608093135547
0.22738728757031 0.8704406864453
0.24136271242969 0.8704406864453
0.28454915028125 0.6608093135547
0.34045084971875 0.6608093135547
0.28454915028125 0.8704406864453
0.34045084971875 0.8704406864453
0.38363728757031 0.6608093135547
0.39761271242969 0.6608093135547
0.38363728757031 0.8704406864453
0.39761271242969 0.8704406864453
0.44079915028125 0.6608093135547
0.49670084971875 0.6608093135547
0.44079915028125 0.8704406864453
0.49670084971875 0.8704406864453
0.6608093135547 0.6608093135547
0.8704406864453 0.6608093135547
0.6608093135547 0.8704406864453
0.8704406864453 0.8704406864453
-46
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@@ -1,46 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
1
1 1 0 1
boundary
2
1 0 0
2 0 1
edges
1
0 0 1
vertices
2
knotvectors
1
1 2 0 0 1 1
weights
1
1
FiniteElementSpace
FiniteElementCollection: NURBS1
VDim: 1
Ordering: 1
0
1
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -6
View File
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = v4.5.3
PROJECT_NUMBER = v4.5.1
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
@@ -795,7 +795,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/common \
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
@MFEM_SOURCE_DIR@/miniapps/gslib \
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
@MFEM_SOURCE_DIR@/miniapps/hooke \
@MFEM_SOURCE_DIR@/miniapps/hooke/kernels \
@MFEM_SOURCE_DIR@/miniapps/hooke/materials \
@@ -811,10 +810,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/shifted \
@MFEM_SOURCE_DIR@/miniapps/solvers \
@MFEM_SOURCE_DIR@/miniapps/tools \
@MFEM_SOURCE_DIR@/miniapps/toys \
@MFEM_SOURCE_DIR@/miniapps/spde \
@MFEM_SOURCE_DIR@/miniapps/dpg \
@MFEM_SOURCE_DIR@/miniapps/dpg/util
@MFEM_SOURCE_DIR@/miniapps/toys
# This tag can be used to specify the character encoding of the source files
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
+2 -8
View File
@@ -39,7 +39,7 @@ namespace mfem {
* - Device
* - Memory
* - MemoryManager
* - mfem::forall functions in forall.hpp
* - MFEM_FORALL macro in forall.hpp
*
* <H3>Example codes</H3>
* - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
@@ -105,8 +105,6 @@ namespace mfem {
* - <a class="el" href="ex32p_8cpp_source.html">Example 32p</a>: parallel anisotropic Maxwell eigensolver
* - <a class="el" href="ex33_8cpp_source.html">Example 33</a>: nodal H1 FEM for the fractional Laplacian problem
* - <a class="el" href="ex33p_8cpp_source.html">Example 33p</a>: parallel nodal H1 FEM for the fractional Laplacian problem
* - <a class="el" href="ex36_8cpp_source.html">Example 36</a>: Proximal Galerkin FEM for the obstacle problem
* - <a class="el" href="ex36p_8cpp_source.html">Example 36p</a>: parallel Proximal Galerkin FEM for the obstacle problem
*
* <H4>AmgX Examples</H4>
* - Variants of Examples
@@ -188,7 +186,6 @@ namespace mfem {
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
* - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
* - <a class="el" href="mesh-quality_8cpp_source.html">Mesh Quality</a>: visualize and check mesh quality
* - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
* - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
* - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
@@ -201,15 +198,12 @@ namespace mfem {
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
* - <a class="el" href="extrapolate_8cpp_source.html">Extrapolation</a>: PDE-based extrapolation of finite element functions
* - <a class="el" href="block-solvers_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
* - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
* - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
*
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
*/
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -18
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -40,8 +40,6 @@ list(APPEND ALL_EXE_SRCS
ex30.cpp
ex31.cpp
ex33.cpp
ex34.cpp
ex36.cpp
)
if (MFEM_USE_MPI)
@@ -79,9 +77,6 @@ if (MFEM_USE_MPI)
ex31p.cpp
ex32p.cpp
ex33p.cpp
ex34p.cpp
ex35p.cpp
ex36p.cpp
)
endif()
@@ -124,10 +119,9 @@ if (MFEM_ENABLE_TESTING)
# Add CUDA/HIP tests.
set(DEVICE_EXAMPLES
# serial examples with device support:
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
# parallel examples with device support:
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p
ex34p ex35p)
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p)
set(MFEM_TEST_DEVICE)
if (MFEM_USE_CUDA)
set(MFEM_TEST_DEVICE "cuda")
@@ -167,15 +161,6 @@ if (MFEM_ENABLE_TESTING)
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
${MPIEXEC_POSTFLAGS})
endif()
# If MUMPS is enabled, add a test run that uses it.
if (MFEM_USE_MUMPS)
add_test(NAME ex25p_mumps_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
${MPIEXEC_POSTFLAGS})
endif()
endif()
# Include the examples/amgx directory if AmgX is enabled
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -22,7 +22,7 @@ using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Parse command line options.
string mesh_file = "../data/star.mesh";
const char *mesh_file = "../data/star.mesh";
int order = 1;
OptionsParser args(argc, argv);

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