Compare commits
3
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
3ded358f84 | ||
|
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08de4f5e87 | ||
|
|
3fe97ad740 |
+8
-14
@@ -31,7 +31,7 @@ install:
|
||||
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
|
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- cmake -H. -Bbuild
|
||||
# -DCMAKE_BUILD_TYPE=Release
|
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- cmake --build build --target metis -j 4
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- cmake --build build
|
||||
- set METIS_PATH=%cd%
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- cd ..
|
||||
|
||||
@@ -40,7 +40,7 @@ install:
|
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- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
|
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- cd hypre-2.19.0/src
|
||||
- cmake -H. -Bbuild
|
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- cmake --build build -j 4
|
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- cmake --build build
|
||||
- cmake --build build --target install
|
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- cd ../..
|
||||
|
||||
@@ -49,20 +49,14 @@ install:
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
|
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# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
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- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
|
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- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
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- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
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||||
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build_script:
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- cmake --build build_parallel --config Debug -j 4
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# - cmake --build build_serial --config Release -j 4
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# - cmake --build build_serial --target exec --config Release -j 4
|
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- cmake --build build_shared_serial --config Release -j 4
|
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- cmake --build build_shared_serial --target exec --config Release -j 4
|
||||
- cmake --build build_parallel --config Release -j 4
|
||||
- cmake --build build_serial --config Release -j 4
|
||||
- cmake --build build_serial --target exec --config Release -j 4
|
||||
|
||||
after_build:
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# - cd build_serial
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||||
# - ctest -C Release --output-on-failure
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# - cd ..
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- cd build_shared_serial
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- cd build_serial
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- ctest -C Release --output-on-failure
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||||
|
||||
@@ -1,4 +1,4 @@
|
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# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -74,19 +74,12 @@ jobs:
|
||||
codecov: YES
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- os: windows-latest
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codecov: NO
|
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- os: windows-latest
|
||||
target: opt
|
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mpi: par
|
||||
config-opts: '-DBUILD_SHARED_LIBS=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
# This option can be set to pass additional configuration options to
|
||||
# the MFEM configuration command.
|
||||
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
@@ -148,7 +141,7 @@ jobs:
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||||
|
||||
- name: get MPI (Windows)
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if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
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uses: mpi4py/setup-mpi@v1.1.4
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uses: mpi4py/setup-mpi@v1.1.2
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||||
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
@@ -162,7 +155,7 @@ jobs:
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||||
|
||||
- name: get hypre
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||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
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uses: mfem/github-actions/build-hypre@v2.4
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uses: mfem/github-actions/build-hypre@v2.2
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||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -171,7 +164,7 @@ jobs:
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -190,7 +183,7 @@ jobs:
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
@@ -217,7 +210,7 @@ jobs:
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -229,7 +222,7 @@ jobs:
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
|
||||
library-only: ${{ matrix.target == 'dbg' }}
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
@@ -263,15 +256,13 @@ jobs:
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && \
|
||||
ctest --output-on-failure -C ${CTEST_CONFIG} || \
|
||||
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
uses: mfem/github-actions/upload-coverage@v2.2
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -57,7 +57,7 @@ jobs:
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -72,14 +72,14 @@ jobs:
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Sanitizer"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
jobs:
|
||||
Serial:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: MFEM Checkout
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
mpi: seq
|
||||
hypre-dir: unused-hypre-dir
|
||||
metis-dir: unused-metis-dir
|
||||
mfem-dir: mfem
|
||||
build-system: make
|
||||
library-only: false
|
||||
config-options:
|
||||
CXX="clang++-14"
|
||||
CXXFLAGS="-g -O1 -std=c++11
|
||||
-fsanitize=address
|
||||
-fno-omit-frame-pointer
|
||||
-fsanitize-address-use-after-scope"
|
||||
|
||||
- name: MFEM Info
|
||||
working-directory: mfem
|
||||
run: make info
|
||||
|
||||
- name: MFEM Sanitize
|
||||
working-directory: mfem
|
||||
run:
|
||||
ASAN_OPTIONS="detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1"
|
||||
make test
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
+7
-44
@@ -21,15 +21,11 @@ CMakeFiles/
|
||||
# Default install location
|
||||
/mfem/
|
||||
|
||||
# Typical build directory
|
||||
/build/
|
||||
|
||||
# Generated files in main directory, config/ and docs/
|
||||
/deps.mk
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.cmake
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
@@ -113,12 +109,6 @@ examples/ex25p-*.*
|
||||
examples/ex28_*
|
||||
examples/ex28p_*
|
||||
examples/flux.*
|
||||
examples/dsol.*
|
||||
examples/cond.*
|
||||
examples/cond_j.*
|
||||
examples/cond_mesh.*
|
||||
examples/port_mesh.*
|
||||
examples/port_mode.*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
@@ -128,9 +118,11 @@ examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/ginkgo/ex1
|
||||
examples/ginkgo/refined.mesh
|
||||
examples/ginkgo/sol.gf
|
||||
examples/gingko/ex1
|
||||
examples/gingko/refined.mesh
|
||||
examples/gingko/sol.gf
|
||||
examples/gingko/mesh.*
|
||||
examples/gingko/sol.*
|
||||
|
||||
examples/hiop/ex9
|
||||
examples/hiop/ex9p
|
||||
@@ -156,8 +148,8 @@ examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex[12]
|
||||
examples/pumi/ex[16]p
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
@@ -202,9 +194,6 @@ miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
miniapps/gslib/findpts
|
||||
miniapps/gslib/pfindpts
|
||||
miniapps/gslib/schwarz_ex1
|
||||
miniapps/gslib/schwarz_ex1p
|
||||
miniapps/gslib/interpolated.gf
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
@@ -214,26 +203,20 @@ miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/reflector
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/pmesh-fitting
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
miniapps/meshing/mesh-quality
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/mesh-explorer-visit*
|
||||
miniapps/meshing/mesh-explorer-paraview/
|
||||
miniapps/meshing/shaper.mesh
|
||||
miniapps/meshing/extruder.mesh
|
||||
miniapps/meshing/trimmer.mesh
|
||||
miniapps/meshing/reflected.mesh
|
||||
miniapps/meshing/optimized*
|
||||
miniapps/meshing/perturbed*
|
||||
miniapps/meshing/polar-nc.mesh
|
||||
@@ -258,7 +241,6 @@ miniapps/navier/navier_tgv
|
||||
miniapps/navier/navier_shear
|
||||
miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/navier_turbchan
|
||||
miniapps/navier/navier_cht
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
|
||||
@@ -294,7 +276,6 @@ miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/get-values
|
||||
miniapps/tools/check-tmop-metric
|
||||
miniapps/tools/tmop-metric-magnitude
|
||||
|
||||
miniapps/toys/automata
|
||||
miniapps/toys/life
|
||||
@@ -324,28 +305,12 @@ miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/hdiv-linear-solver/darcy
|
||||
miniapps/hdiv-linear-solver/grad_div
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/hooke/hooke
|
||||
|
||||
miniapps/dpg/diffusion
|
||||
miniapps/dpg/pdiffusion
|
||||
miniapps/dpg/convection-diffusion
|
||||
miniapps/dpg/pconvection-diffusion
|
||||
miniapps/dpg/acoustics
|
||||
miniapps/dpg/pacoustics
|
||||
miniapps/dpg/maxwell
|
||||
miniapps/dpg/pmaxwell
|
||||
miniapps/dpg/ParaView
|
||||
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
@@ -358,8 +323,6 @@ tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
tests/unit/parallel_in_serial.mesh
|
||||
tests/unit/parallel_in_serial.gf
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,10 +22,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -55,10 +57,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -47,10 +47,12 @@ setup_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,11 +35,13 @@ setup:
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
|
||||
# try every 5 seconds; we may want to add a counter for the number of
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
@@ -67,10 +69,12 @@ setup:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,14 +14,14 @@ stages:
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
opt_mpi_cuda_xl_16_1_1_8:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
|
||||
+11
-13
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -51,8 +51,6 @@ cleanup:
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
|
||||
- make -C "${CI_PROJECT_DIR}" distclean
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
@@ -68,10 +66,12 @@ report_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -82,20 +82,18 @@ report_baseline:
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
|
||||
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
|
||||
fi
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -27,39 +27,44 @@ allocate_resource:
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_10:
|
||||
debug_ser_gcc_4_9_3:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug~mpi"
|
||||
SPEC: "%gcc@4.9.3 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_10:
|
||||
debug_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug+mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_10:
|
||||
debug_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 ~mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10:
|
||||
opt_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1"
|
||||
SPEC: "%gcc@6.1.0 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_sundials:
|
||||
opt_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +sundials"
|
||||
SPEC: "%gcc@6.1.0"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_petsc:
|
||||
opt_par_gcc_6_1_0_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
|
||||
SPEC: "%gcc@6.1.0 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_pumi:
|
||||
opt_par_gcc_6_1_0_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
|
||||
+29
-16
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -42,34 +42,47 @@ fi
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
status=0
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
if [[ -s ${glob_err} ]]; then
|
||||
echo "ERROR during ${BASELINE_TEST} execution"
|
||||
echo "Here is the ${glob_err} file content"
|
||||
if [[ -s ${glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${glob_err} file content";
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
status=1
|
||||
fi
|
||||
if [[ -f ${base_patch} ]]; then
|
||||
exit 1;
|
||||
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${base_patch} or ${base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]; then
|
||||
elif [[ -f ${base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]; then
|
||||
if [[ -f ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
status=1
|
||||
# We create a .err file, because that's how we signal that there was a diff.
|
||||
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
|
||||
fi
|
||||
if [[ $status -eq 0 ]]; then
|
||||
|
||||
if [[ ! -s ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
exit $status
|
||||
|
||||
@@ -1,41 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Try to push to the remote 5 times. If the push fails, and the local and remote
|
||||
# have diverged, then pull from the remote to merge changes, and try pushing
|
||||
# again. If some other failure happens
|
||||
for i in {1..5}; do
|
||||
git push origin master && exit 0
|
||||
# Wait for 20 seconds in case someone else is pushing to the remote
|
||||
# concurrently
|
||||
sleep 20
|
||||
# Fetch any updates from the remote
|
||||
git remote update
|
||||
# Get the latest commit on the local branch
|
||||
LOCAL=$(git rev-parse @)
|
||||
# Get the latest commit on the remote
|
||||
REMOTE=$(git rev-parse @{u})
|
||||
# Get the common ancestor
|
||||
BASE=$(git merge-base @ @{u})
|
||||
# Have the local and remote diverged?
|
||||
if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
|
||||
git pull
|
||||
if [[ $? == 0 ]]; then
|
||||
continue
|
||||
else
|
||||
exit 1 # Something else went wrong trying to pull
|
||||
fi
|
||||
fi
|
||||
done
|
||||
|
||||
exit 1 # Did not succeed in 5 attempts
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -32,7 +32,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -29,7 +29,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -8,131 +8,43 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.5.3 (development)
|
||||
|
||||
|
||||
Version 4.5.1 (development)
|
||||
===========================
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new example code, Example 36/36p, to demonstrate the solution of
|
||||
the obstacle problem with a new finite element method.
|
||||
|
||||
- Added a new miniapp, Mesh Quality, for evaluating mesh quality using size,
|
||||
skewness, and aspect-ratio computed from the Jacobian of the transformation.
|
||||
|
||||
- Added a new miniapp for interface and boundary fitting to implicit domains
|
||||
defined using level-set functions. See miniapps/meshing/pmesh-fitting.cpp
|
||||
|
||||
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
|
||||
and parallel examples for diffusion, convection-diffusion, acoustics and
|
||||
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
|
||||
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
|
||||
integrators are added in support of DPG systems: TraceIntegrator,
|
||||
NormalTraceIntegrator and TangentTraceIntegrator.
|
||||
|
||||
- Added new SubMesh examples demonstrating source terms and boundary conditions
|
||||
transferred from SubMesh objects.
|
||||
|
||||
- Added a new H(div) solvers miniapp in miniapps/hdiv-linear-solver,
|
||||
demonstrating the use of a matrix-free saddle-point solver methodology,
|
||||
suitable for high-order discretizations and for GPU acceleration. Examples
|
||||
illustrating the solution of Darcy and grad-div problems are included.
|
||||
|
||||
- Added a random refinement option to the mesh-explorer miniapp to assist users
|
||||
in experimenting with nonconforming meshes.
|
||||
|
||||
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added new methods in the Mesh class to set and get attributes on NURBS patches
|
||||
and patch boundaries.
|
||||
|
||||
- Added HIP support to the SUNDIALS interface.
|
||||
|
||||
- TMOP improvement: added asymptotically-balanced compound metrics 90, 94, 328,
|
||||
338. Added the tmop-metric-magnitude tool for tracking how metrics change
|
||||
under geometric perturbations.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Face restriction operators for Nedelec and Raviart-Thomas finite element
|
||||
spaces are now supported through the ConformingFaceRestriction class.
|
||||
|
||||
- SubMesh and ParSubMesh have been extended to support the transfer of
|
||||
Nedelec and Raviart-Thomas finite element spaces.
|
||||
|
||||
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
|
||||
|
||||
- Added support for p-refined meshes in FindPointsGSLIB.
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Updated interface to MUMPS direct solver to support multiple right-hand
|
||||
sides, block low-rank compression, builds using 64-bit integers, and other
|
||||
improvements.
|
||||
|
||||
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
|
||||
This interface provides a serial (OpenMP shared memory) version of Pardiso for
|
||||
use with SparseMatrix. This complements the existing parallel (MPI distributed
|
||||
memory) version already available through the CPardiso MFEM integration.
|
||||
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
|
||||
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Improved lambda body debugging with the addition of mfem::forall functions.
|
||||
These functions can take the place of the MFEM_FORALL macros, which have been
|
||||
preserved for backwards compatibility.
|
||||
|
||||
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
|
||||
in the fem/integ/ subdirectory.
|
||||
|
||||
|
||||
Version 4.5.2, released on March 23, 2023
|
||||
=========================================
|
||||
|
||||
- Added support for pyramids in non-conforming meshes. Currently only isotropic
|
||||
refinement is supported in this case.
|
||||
|
||||
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
|
||||
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- TBD
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Added a fast normalization-based distance solver, see the Distance miniapp
|
||||
in the miniapps/shifted/ directory.
|
||||
|
||||
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
|
||||
hexahedral mesh about a plane.
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- TBD
|
||||
|
||||
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
|
||||
domain boundary.
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
|
||||
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
|
||||
|
||||
- Added an option to auto-balance compound TMOP metrics.
|
||||
|
||||
- Fixed a bug in TMOP metric 301.
|
||||
|
||||
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
|
||||
as the coarsening operator for non-conforming AMR meshes.
|
||||
|
||||
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
|
||||
face-neighbor elements.
|
||||
|
||||
- Added support for pyramids in Gmsh meshes.
|
||||
|
||||
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
|
||||
formats using the corresponding DataCollection. See option 'D' in the menu.
|
||||
|
||||
- VisItDataCollection now correctly handles data collection names containing
|
||||
Miscellaneous
|
||||
-------------
|
||||
- VisItDataCollection now correctly handles collection names containing
|
||||
underscores.
|
||||
|
||||
- Added support for shared Windows builds with MSVC through CMake.
|
||||
Developers note: this enhancement is facilitated by the addition of the macro
|
||||
MFEM_EXPORT, see config.hpp for more details on its usage.
|
||||
|
||||
- The following integrations have updated minimum version requirements:
|
||||
* RAJA >= 2022.10.3
|
||||
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
|
||||
used to represent the MPI rank because VisIt seems to require 6 digits.
|
||||
This parameter can still be explicitly overridden with
|
||||
VisItDataCollection::SetPadDigitsRank().
|
||||
|
||||
API changes
|
||||
-----------
|
||||
@@ -140,14 +52,6 @@ API changes
|
||||
have been deprecated and generate deprecation warnings if used. They will be
|
||||
removed in a future release.
|
||||
|
||||
- The methods Mesh::GetFaceBaseGeometry and Mesh::GetFaceGeometryType have been
|
||||
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
|
||||
should be used instead.
|
||||
|
||||
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
|
||||
used to represent the MPI rank because VisIt seems to require 6 digits.
|
||||
This parameter can still be explicitly overridden with SetPadDigitsRank().
|
||||
|
||||
|
||||
Version 4.5, released on October 22, 2022
|
||||
=========================================
|
||||
|
||||
+21
-68
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -13,7 +13,6 @@
|
||||
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
|
||||
# Version 3.8 or newer is required for direct CUDA support.
|
||||
cmake_minimum_required(VERSION 3.8)
|
||||
message(STATUS "CMake version: ${CMAKE_VERSION}")
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
@@ -25,11 +24,8 @@ set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
# Load user settings before the defaults - this way the defaults will not
|
||||
# overwrite the user set options. If the user has not set all options, we still
|
||||
# have the defaults.
|
||||
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
|
||||
if (USER_CONFIG_LOADED)
|
||||
set(USER_CONFIG_LOADED "LOADED")
|
||||
endif()
|
||||
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
|
||||
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
|
||||
include("${USER_CONFIG}" OPTIONAL)
|
||||
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
|
||||
|
||||
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
|
||||
@@ -57,7 +53,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.5.3)
|
||||
set(${PROJECT_NAME}_VERSION 4.5.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -82,16 +78,12 @@ if (MFEM_USE_CONDUIT OR
|
||||
# * find_package(PETSc REQUIRED)
|
||||
set(XSDK_ENABLE_C ON)
|
||||
endif()
|
||||
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
|
||||
if ((MFEM_USE_SUNDIALS OR
|
||||
MFEM_USE_STRUMPACK OR
|
||||
MFEM_USE_GINKGO OR
|
||||
MFEM_USE_RAJA OR
|
||||
MFEM_USE_UMPIRE) AND
|
||||
# SUNDIALS, STRUMPACK, and Ginkgo require C++14:
|
||||
if ((MFEM_USE_SUNDIALS OR MFEM_USE_STRUMPACK OR MFEM_USE_GINKGO) AND
|
||||
("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
set(CMAKE_CXX_STANDARD 14)
|
||||
endif()
|
||||
@@ -115,7 +107,10 @@ if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
enable_language(CUDA)
|
||||
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
if (MFEM_USE_GINKGO)
|
||||
set(CMAKE_CUDA_STANDARD 14)
|
||||
endif()
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CUDA_FLAGS "--expt-extended-lambda")
|
||||
@@ -138,7 +133,8 @@ if (MFEM_USE_CUDA)
|
||||
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(CMAKE_CUDA_FLAGS ${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS})
|
||||
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
|
||||
"CUDA flags set for MFEM" FORCE)
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
set(CUBLAS_FOUND TRUE)
|
||||
@@ -187,23 +183,6 @@ else()
|
||||
set(MFEM_DEBUG OFF)
|
||||
endif()
|
||||
|
||||
# Shared build on Windows
|
||||
if (WIN32 AND BUILD_SHARED_LIBS)
|
||||
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
|
||||
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
|
||||
"Automatically export symbols for shared Windows DLL build")
|
||||
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
|
||||
# the build directory, so that the .exe files can find the .dll files at
|
||||
# runtime:
|
||||
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
|
||||
# Note: CMake tests are run from the build-tree sub-directory where the test
|
||||
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
|
||||
# work fine.
|
||||
# Not strictly necessary:
|
||||
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
endif()
|
||||
|
||||
# AMD HIP
|
||||
if (MFEM_USE_HIP)
|
||||
if (HIP_ARCH)
|
||||
@@ -317,9 +296,6 @@ if (MFEM_USE_SUNDIALS)
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
if (MFEM_USE_HIP)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
@@ -336,7 +312,6 @@ endif()
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
@@ -470,18 +445,12 @@ if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
# MKL CPardiso
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MKL Pardiso
|
||||
if (MFEM_USE_MKL_PARDISO)
|
||||
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
@@ -531,8 +500,8 @@ find_package(Threads REQUIRED)
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
|
||||
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
@@ -550,7 +519,6 @@ list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
|
||||
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
|
||||
|
||||
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
|
||||
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
|
||||
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
@@ -606,19 +574,7 @@ target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
|
||||
# The INSTALL_INTERFACE is handled below
|
||||
${TPL_INCLUDE_DIRS})
|
||||
if (MFEM_USE_MPI)
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
@@ -630,7 +586,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
|
||||
"${PROJECT_BINARY_DIR}/config/_config.hpp")
|
||||
@@ -742,15 +697,13 @@ add_subdirectory(doc)
|
||||
message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
|
||||
set(INSTALL_INCLUDE_DIR include
|
||||
CACHE PATH "Relative path for installing header files.")
|
||||
set(INSTALL_BIN_DIR bin
|
||||
CACHE PATH "Relative path for installing the binaries.")
|
||||
set(INSTALL_LIB_DIR lib
|
||||
CACHE PATH "Relative path for installing the library.")
|
||||
# other options: "share/mfem/cmake", "lib/mfem/cmake"
|
||||
set(INSTALL_CMAKE_DIR lib/cmake/mfem
|
||||
CACHE PATH "Relative path for installing cmake config files.")
|
||||
|
||||
target_include_directories(mfem BEFORE
|
||||
target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
|
||||
|
||||
@@ -762,9 +715,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
|
||||
# Install the library
|
||||
install(TARGETS ${PROJECT_NAME}
|
||||
EXPORT ${PROJECT_NAME_UC}Targets
|
||||
RUNTIME DESTINATION ${INSTALL_BIN_DIR}
|
||||
LIBRARY DESTINATION ${INSTALL_LIB_DIR}
|
||||
ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
|
||||
DESTINATION ${INSTALL_LIB_DIR})
|
||||
|
||||
# Install the master headers
|
||||
foreach(Header mfem.hpp mfem-performance.hpp)
|
||||
@@ -802,8 +753,10 @@ endif()
|
||||
|
||||
# Install the configuration header files
|
||||
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
|
||||
RENAME config.hpp)
|
||||
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
|
||||
|
||||
# Package the whole thing up nicely
|
||||
|
||||
+1
-3
@@ -121,7 +121,6 @@ The MFEM source code has the following structure:
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── integ
|
||||
│ ├── lor
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
@@ -137,7 +136,6 @@ The MFEM source code has the following structure:
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
@@ -211,7 +209,7 @@ device/host memory manager.
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
|
||||
@@ -628,13 +628,9 @@ The specific libraries and their options are:
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
|
||||
for HIP.
|
||||
URL: http://computing.llnl.gov/projects/sundials/sundials-software
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0,
|
||||
SUNDIALS >= 5.4.0 for CUDA support, and
|
||||
SUNDIALS >= 5.7.0 for HIP support.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
@@ -797,10 +793,10 @@ The specific libraries and their options are:
|
||||
Versions: libCEED >= 0.10.
|
||||
|
||||
- RAJA (optional), used when MFEM_USE_RAJA = YES.
|
||||
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
|
||||
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
|
||||
URL: https://github.com/LLNL/RAJA
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 2022.10.3.
|
||||
Versions: RAJA >= 0.14.0.
|
||||
|
||||
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
|
||||
URL: https://bitbucket.org/zulianp/par_moonolith
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
BSD 3-Clause License
|
||||
|
||||
Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
|
||||
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
|
||||
All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -55,8 +55,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
|
||||
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
|
||||
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
|
||||
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
|
||||
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
|
||||
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
|
||||
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
|
||||
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
|
||||
+59
-70
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -39,9 +39,6 @@
|
||||
// Description of the git commit used to build MFEM.
|
||||
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
#cmakedefine MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
#cmakedefine MFEM_USE_MPI
|
||||
@@ -80,102 +77,97 @@
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
#cmakedefine MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
#cmakedefine MFEM_USE_SUPERLU
|
||||
#cmakedefine MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
#cmakedefine MFEM_USE_MUMPS
|
||||
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
// Enable functionality based on the Ginkgo library
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// Enable MFEM functionality based on the AmgX library
|
||||
#cmakedefine MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable MFEM functionality based on the GnuTLS library
|
||||
#cmakedefine MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
#cmakedefine MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
#cmakedefine MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Enable MFEM functionality based on the NetCDF library
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable MFEM functionality based on the FMS library
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the Moonolith library
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HiOp library
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Build the HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
#cmakedefine MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable functionality based on the libCEED library.
|
||||
// Enable MFEM functionality based on the libCEED library
|
||||
#cmakedefine MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Algoim library.
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// Enable MFEM functionality based on the Umpire library
|
||||
#cmakedefine MFEM_USE_UMPIRE
|
||||
|
||||
// Enable IO functionality based on the ADIOS2 library.
|
||||
// Enable MFEM functionality based on the ADIOS2 library
|
||||
#cmakedefine MFEM_USE_ADIOS2
|
||||
|
||||
// Enable MFEM functionality based on the Caliper library
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable MFEM functionality based on the Algoim library
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
@@ -186,16 +178,13 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
#cmakedefine MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
#cmakedefine MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// Enable MFEM functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable Enzyme for AD
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -16,7 +16,7 @@
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Algoim ALGOIM ALGOIM_DIR
|
||||
"include;src" "algoim_quad.hpp"
|
||||
"include" "algoim_quad.hpp"
|
||||
"" ""
|
||||
"Paths to headers required by Algoim."
|
||||
"Libraries required by Algoim.")
|
||||
"Paths to headers required by Algoim."
|
||||
"Libraries required by Algoim.")
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
|
||||
# we only need HDF5 if Conduit was built with HDF5 support
|
||||
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
|
||||
"Additional packages required by Conduit.")
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
|
||||
# MFEM's FindHDF5.cmake is not used.
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
|
||||
ADD_COMPONENT relay
|
||||
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,27 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MKL_PARDISO_FOUND
|
||||
# - MKL_PARDISO_LIBRARIES
|
||||
# - MKL_PARDISO_INCLUDE_DIRS
|
||||
|
||||
if(NOT MKL_LIBRARY_DIR)
|
||||
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
|
||||
set(MKL_LIBRARY_DIR "lib/intel64")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MKL_PARDISO MKL_PARDISO
|
||||
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
|
||||
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
|
||||
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
|
||||
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -11,9 +11,8 @@
|
||||
|
||||
# Sets the following variables:
|
||||
# - MUMPS_FOUND
|
||||
# - MUMPS_LIBRARIES
|
||||
# - MUMPS_INCLUDE_DIRS
|
||||
# - MUMPS_VERSION
|
||||
# - MUMPS_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
${CMAKE_CURRENT_BINARY_DIR}/config
|
||||
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
|
||||
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
|
||||
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
|
||||
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
|
||||
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
|
||||
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
|
||||
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unable to determine MUMPS version.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,17 +14,11 @@
|
||||
# - NETCDF_LIBRARIES
|
||||
# - NETCDF_INCLUDE_DIRS
|
||||
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
|
||||
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
|
||||
# We need to guard against the case where HDF5 was already found but without
|
||||
# the HL extensions (in which case mfem_find_package will treat the package
|
||||
@@ -41,11 +35,6 @@ mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
|
||||
# The netcdf library will always be the first element of NETCDF_LIBRARIES
|
||||
# and we need to insert after that library but before the hdf5 library, so
|
||||
# position 1 is used
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
if (HDF5_C_LIBRARY_hdf5_hl)
|
||||
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
if (NOT NetCDF_FIND_QUIETLY)
|
||||
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
|
||||
endif()
|
||||
endif()
|
||||
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
|
||||
# is already added to NETCDF_LIBRARIES)
|
||||
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,27 +14,17 @@
|
||||
# - RAJA_LIBRARIES
|
||||
# - RAJA_INCLUDE_DIRS
|
||||
|
||||
if (RAJA_FOUND)
|
||||
return()
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
|
||||
"Paths to headers required by RAJA." "Libraries required by RAJA.")
|
||||
|
||||
if (NOT RAJA_CONFIG_CMAKE)
|
||||
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
|
||||
endif()
|
||||
message(STATUS "Looking for RAJA ...")
|
||||
if (RAJA_DIR)
|
||||
message(STATUS " in RAJA_DIR = ${RAJA_DIR}")
|
||||
find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
|
||||
endif()
|
||||
if (NOT RAJA_FOUND)
|
||||
message(STATUS " in standard CMake locations")
|
||||
find_package(RAJA CONFIG)
|
||||
endif()
|
||||
if (RAJA_FOUND)
|
||||
set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
|
||||
set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
|
||||
message(STATUS
|
||||
"Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (RAJA_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
if (EXISTS "${RAJA_CONFIG_CMAKE}")
|
||||
include("${RAJA_CONFIG_CMAKE}")
|
||||
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
|
||||
message(FATAL_ERROR
|
||||
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
|
||||
endif()
|
||||
message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
|
||||
ADD_COMPONENT NVector_Cuda
|
||||
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
|
||||
ADD_COMPONENT NVector_Hip
|
||||
"include" nvector/nvector_hip.h "lib" sundials_nvechip
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT NVector_Parallel
|
||||
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
|
||||
ADD_COMPONENT NVector_MPIPlusX
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,23 +14,6 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
find_package(umpire CONFIG)
|
||||
find_package(umpire REQUIRED CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
if (UMPIRE_FOUND)
|
||||
message(STATUS
|
||||
"Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (UMPIRE_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
endif()
|
||||
message(${msg}
|
||||
"UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -103,6 +103,25 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
|
||||
|
||||
target_link_libraries(${EXE_NAME} mfem)
|
||||
if (MFEM_USE_MPI)
|
||||
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
|
||||
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
|
||||
|
||||
# Language-specific include directories:
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endforeach(SRC_FILE)
|
||||
endmacro()
|
||||
|
||||
@@ -153,6 +172,26 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
if (EXTRA_DEFINES_LIST)
|
||||
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
|
||||
endif()
|
||||
|
||||
# Handle the MPI separately
|
||||
if (MFEM_USE_MPI)
|
||||
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
|
||||
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
|
||||
@@ -397,9 +436,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
break()
|
||||
endif()
|
||||
endforeach()
|
||||
if (Required AND NOT ${ReqPack}_FOUND)
|
||||
if (${Required} AND NOT ${ReqPack}_FOUND)
|
||||
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
|
||||
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
@@ -465,18 +504,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
endif()
|
||||
get_target_property(IsImported ${TargetName} IMPORTED)
|
||||
if (IsImported)
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
|
||||
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
|
||||
if (NOT ImportConfig)
|
||||
set(ImportConfig RELEASE)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if (_Index EQUAL -1)
|
||||
list(GET ImpConfigs 0 ImportConfig)
|
||||
endif()
|
||||
endif()
|
||||
set(ImportConfigSuffix "_${ImportConfig}")
|
||||
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
set(ImportConfig "NO_CONFIG")
|
||||
set(ImportConfigSuffix "")
|
||||
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
|
||||
@@ -494,8 +529,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
else()
|
||||
# Set _Pack_LIBS from the target properties for ImportConfig
|
||||
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
|
||||
INTERFACE_LINK_LIBRARIES)
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
|
||||
get_target_property(_value ${TargetName} ${_prop})
|
||||
if (_value)
|
||||
list(APPEND _Pack_LIBS ${_value})
|
||||
@@ -746,7 +780,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
|
||||
endforeach()
|
||||
endif()
|
||||
set(AddInterfaceLinkLibs TRUE)
|
||||
if ("${type}" STREQUAL "STATIC_LIBRARY")
|
||||
get_target_property(Location ${tgt} LOCATION)
|
||||
if (Location)
|
||||
@@ -768,27 +801,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
|
||||
endif()
|
||||
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
|
||||
# The INTERFACE_LINK_LIBRARIES property is handled below.
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
set(AddInterfaceLinkLibs FALSE)
|
||||
endif()
|
||||
if (AddInterfaceLinkLibs)
|
||||
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
|
||||
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
|
||||
if (Libs)
|
||||
foreach(Lib ${Libs})
|
||||
if (NOT (TARGET ${Lib}))
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
endif()
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
list(APPEND CompileOpts ${COpts})
|
||||
@@ -796,6 +813,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
endif()
|
||||
endforeach()
|
||||
endif()
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
endif()
|
||||
|
||||
# Other potentially relevant properties:
|
||||
@@ -819,9 +843,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
|
||||
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
|
||||
|
||||
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
|
||||
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
|
||||
|
||||
endfunction(mfem_get_target_options)
|
||||
|
||||
|
||||
@@ -873,7 +894,7 @@ function(mfem_export_mk_files)
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
endforeach()
|
||||
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
|
||||
|
||||
+3
-22
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,30 +30,11 @@
|
||||
#endif
|
||||
|
||||
// Windows specific options
|
||||
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
|
||||
#ifdef _WIN32
|
||||
#ifndef _USE_MATH_DEFINES
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
// Macro MFEM_EXPORT: this macro is used when declaring exported global
|
||||
// variables and static class variables in public header files, e.g.:
|
||||
// extern MFEM_EXPORT Geometry Geometries;
|
||||
// static MFEM_EXPORT Device device_singleton;
|
||||
// In cases where a class contains multiple static variables, instead of marking
|
||||
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
|
||||
// e.g.:
|
||||
// class MFEM_EXPORT MemoryManager ...
|
||||
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
|
||||
// variable that needs MFEM_EXPORT does not have it. However, builds with
|
||||
// optional external libraries are not tested and may require separate checks to
|
||||
// determine the necessity of MFEM_EXPORT.
|
||||
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
|
||||
#ifdef mfem_EXPORTS
|
||||
#define MFEM_EXPORT __declspec(dllexport)
|
||||
#else
|
||||
#define MFEM_EXPORT __declspec(dllimport)
|
||||
#endif
|
||||
#else
|
||||
#define MFEM_EXPORT
|
||||
#endif
|
||||
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
|
||||
// the following macro allows us to get M_PI and some needed functions, e.g.
|
||||
|
||||
+17
-23
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,18 +30,15 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// The absolute path of the MFEM source prefix.
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix.
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
// #define MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
@@ -91,7 +88,7 @@
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
// #define MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
// Enable MFEM functionality based on the SuperLU library.
|
||||
// #define MFEM_USE_SUPERLU
|
||||
// #define MFEM_USE_SUPERLU5
|
||||
|
||||
@@ -102,40 +99,40 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// Enable MFEM features based on the Ginkgo library
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// #define MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable secure socket streams based on the GNUTLS library
|
||||
// #define MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
// Enable Sidre support
|
||||
// #define MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
// #define MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
// Enable FMS support
|
||||
// #define MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
// Enable Conduit support
|
||||
// #define MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files)
|
||||
// #define MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
@@ -144,7 +141,7 @@
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
// #define MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
// #define MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
@@ -186,13 +183,10 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
// #define MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
// #define MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
// #define MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
// #define MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
|
||||
+1
-2
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -57,7 +57,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
|
||||
MFEM_USE_SIMD = @MFEM_USE_SIMD@
|
||||
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
|
||||
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
|
||||
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
|
||||
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
|
||||
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
|
||||
+12
-13
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
|
||||
endif()
|
||||
|
||||
# MFEM options. Set to mimic the default "defaults.mk" file.
|
||||
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
|
||||
@@ -60,7 +59,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
|
||||
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
|
||||
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
|
||||
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
|
||||
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
|
||||
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
@@ -135,18 +133,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
|
||||
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
|
||||
"Additional packages required by ParMETIS.")
|
||||
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
|
||||
"Path to the SuperLU_DIST library.")
|
||||
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
|
||||
"LAPACK" "BLAS" CACHE STRING
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
"Additional packages required by SuperLU_DIST.")
|
||||
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
|
||||
"Path to the MUMPS library.")
|
||||
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
|
||||
# Packages required by MUMPS, depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
|
||||
"Additional packages required by MUMPS.")
|
||||
# If the MPI package does not find all required Fortran libraries:
|
||||
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
@@ -229,16 +225,19 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
|
||||
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
|
||||
|
||||
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
# If RAJA is built with external CAMP:
|
||||
# set(RAJA_REQUIRED_PACKAGES "camp"
|
||||
# CACHE STRING "Packages that RAJA depends on.")
|
||||
# set(camp_DIR "${MFEM_DIR}/../camp/lib/cmake/camp"
|
||||
# CACHE PATH "Path to CAMP CMake files.")
|
||||
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
|
||||
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
|
||||
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
|
||||
set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
|
||||
set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
|
||||
set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
|
||||
set(ALGOIM_REQUIRED_PACKAGES "BLITZ" CACHE STRING
|
||||
"Packages that ALGOIM depends on.")
|
||||
|
||||
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
|
||||
|
||||
+8
-28
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
|
||||
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
|
||||
# gfx900, gfx1010, etc.
|
||||
HIP_ARCH = gfx900
|
||||
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
|
||||
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
|
||||
HIP_XCOMPILER =
|
||||
HIP_XLINKER = -Wl,
|
||||
|
||||
@@ -160,7 +160,6 @@ MFEM_USE_UMPIRE = NO
|
||||
MFEM_USE_SIMD = NO
|
||||
MFEM_USE_ADIOS2 = NO
|
||||
MFEM_USE_MKL_CPARDISO = NO
|
||||
MFEM_USE_MKL_PARDISO = NO
|
||||
MFEM_USE_MOONOLITH = NO
|
||||
MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
@@ -267,9 +266,6 @@ endif
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
SUNDIALS_LIB += -lsundials_nveccuda
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvechip
|
||||
endif
|
||||
# If SUNDIALS was built with KLU:
|
||||
# MFEM_USE_SUITESPARSE = YES
|
||||
|
||||
@@ -288,10 +284,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
|
||||
-lsuperlu_dist_5.1.0
|
||||
else
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
|
||||
-lsuperlu_dist $(LAPACK_LIB)
|
||||
-lsuperlu_dist -lblas
|
||||
endif
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
@@ -315,7 +311,7 @@ MPI_FORTRAN_LIB = -lmpifort
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
@@ -488,6 +484,7 @@ ifdef GOTCHA_DIR
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
|
||||
endif
|
||||
|
||||
|
||||
# BLITZ library configuration
|
||||
BLITZ_DIR = @MFEM_DIR@/../blitz
|
||||
BLITZ_OPT = -I$(BLITZ_DIR)/include
|
||||
@@ -509,29 +506,20 @@ CEED_OPT = -I$(CEED_DIR)/include
|
||||
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
|
||||
|
||||
# RAJA library configuration
|
||||
ifeq ($(MFEM_USE_RAJA),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
RAJA_DIR = @MFEM_DIR@/../raja
|
||||
RAJA_OPT = -I$(RAJA_DIR)/include
|
||||
ifdef CUB_DIR
|
||||
RAJA_OPT += -I$(CUB_DIR)
|
||||
endif
|
||||
|
||||
CAMP_LIB = -lcamp
|
||||
ifdef CAMP_DIR
|
||||
RAJA_OPT += -I$(CAMP_DIR)/include
|
||||
CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
|
||||
endif
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
|
||||
|
||||
# UMPIRE library configuration
|
||||
ifeq ($(MFEM_USE_UMPIRE),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
UMPIRE_DIR = @MFEM_DIR@/../umpire
|
||||
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
|
||||
|
||||
# MKL CPardiso library configuration
|
||||
MKL_CPARDISO_DIR ?=
|
||||
@@ -542,14 +530,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# MKL Pardiso library configuration
|
||||
MKL_PARDISO_DIR ?=
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
|
||||
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# PARELAG library configuration
|
||||
PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
|
||||
# copyright check
|
||||
copyright=true
|
||||
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
|
||||
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^3]\|[^2].\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2023:"
|
||||
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2022:"
|
||||
cat matches.txt
|
||||
copyright=false
|
||||
fi
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -138,7 +138,7 @@ groups_parallel=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp pminimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
@@ -227,7 +227,7 @@ groups_all=(
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
|
||||
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,48 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
6
|
||||
1 3 0 1 4 3
|
||||
1 3 2 3 6 5
|
||||
1 2 3 4 8
|
||||
1 2 4 7 8
|
||||
1 2 7 6 8
|
||||
1 2 6 3 8
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 0 1
|
||||
2 1 1 4
|
||||
3 1 4 7
|
||||
4 1 7 6
|
||||
5 1 6 5
|
||||
6 1 5 2
|
||||
7 1 2 3
|
||||
8 1 3 0
|
||||
|
||||
vertices
|
||||
9
|
||||
2
|
||||
0.5 0
|
||||
1 0
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
1 0.5
|
||||
0 1
|
||||
0.5 1
|
||||
1 1
|
||||
0.75 0.75
|
||||
@@ -1,44 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
3
|
||||
1 3 0 1 4 3
|
||||
1 3 2 3 6 5
|
||||
1 3 3 4 7 6
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 0 1
|
||||
2 1 1 4
|
||||
3 1 4 7
|
||||
4 1 7 6
|
||||
5 1 6 5
|
||||
6 1 5 2
|
||||
7 1 2 3
|
||||
8 1 3 0
|
||||
|
||||
vertices
|
||||
8
|
||||
2
|
||||
0.5 0
|
||||
1 0
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
1 0.5
|
||||
0 1
|
||||
0.5 1
|
||||
1 1
|
||||
@@ -1,322 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
# PYRAMID = 7
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
26
|
||||
1 2 1 18 0
|
||||
1 3 1 3 19 18
|
||||
2 3 3 6 20 19
|
||||
1 3 6 9 21 20
|
||||
2 3 9 12 22 21
|
||||
1 3 12 15 23 22
|
||||
2 2 23 15 24
|
||||
1 2 1 4 3
|
||||
2 3 4 7 6 3
|
||||
1 3 7 10 9 6
|
||||
2 3 10 13 12 9
|
||||
1 3 13 16 15 12
|
||||
2 3 16 25 24 15
|
||||
1 3 2 5 4 1
|
||||
1 3 5 8 7 4
|
||||
1 3 8 11 10 7
|
||||
1 3 11 14 13 10
|
||||
1 3 14 17 16 13
|
||||
1 2 25 16 17
|
||||
1 3 18 19 27 26
|
||||
2 3 19 20 28 27
|
||||
1 3 20 21 29 28
|
||||
2 3 21 22 30 29
|
||||
1 3 22 23 31 30
|
||||
2 3 23 24 32 31
|
||||
1 3 24 25 33 32
|
||||
|
||||
boundary
|
||||
18
|
||||
1 1 28 27
|
||||
2 1 30 29
|
||||
3 1 32 31
|
||||
4 1 0 1
|
||||
4 1 1 2
|
||||
4 1 2 5
|
||||
4 1 5 8
|
||||
4 1 8 11
|
||||
4 1 11 14
|
||||
4 1 14 17
|
||||
4 1 17 25
|
||||
4 1 25 33
|
||||
4 1 33 32
|
||||
4 1 31 30
|
||||
4 1 29 28
|
||||
4 1 27 26
|
||||
4 1 26 18
|
||||
4 1 18 0
|
||||
|
||||
vertices
|
||||
34
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: H1_2D_P3
|
||||
VDim: 2
|
||||
Ordering: 1
|
||||
|
||||
0 0
|
||||
0.53125 0
|
||||
1 0
|
||||
0.53125 0.09375
|
||||
0.5625 0.09375
|
||||
1 0.09375
|
||||
0.53125 0.21875
|
||||
0.6875 0.21875
|
||||
1 0.1875
|
||||
0.53125 0.25
|
||||
0.71875 0.25
|
||||
1 0.25
|
||||
0.53125 0.375
|
||||
0.84375 0.375
|
||||
1 0.34375
|
||||
0.53125 0.40625
|
||||
0.875 0.40625
|
||||
1 0.40625
|
||||
0 0.53125
|
||||
0.09375 0.53125
|
||||
0.21875 0.53125
|
||||
0.25 0.53125
|
||||
0.375 0.53125
|
||||
0.40625 0.53125
|
||||
0.53125 0.53125
|
||||
1 0.53125
|
||||
0 1
|
||||
0.09375 1
|
||||
0.21875 1
|
||||
0.25 1
|
||||
0.375 1
|
||||
0.40625 1
|
||||
0.53125 1
|
||||
1 1
|
||||
|
||||
0.33175106835972 0.094168845750364
|
||||
0.094168845750364 0.33175106835972
|
||||
-5.1759634627347e-17 0.14683388869532
|
||||
6.5255471622478e-17 0.38441611130468
|
||||
0.14683388869532 6.0713766400335e-17
|
||||
0.38441611130468 8.2458945395444e-19
|
||||
0.53125 0.025911862710939
|
||||
0.53125 0.067838137289061
|
||||
0.34721731046049 0.13433915461926
|
||||
0.13433915461926 0.34721731046049
|
||||
0.025911862710939 0.53125
|
||||
0.067838137289061 0.53125
|
||||
0.53125 0.12829915028125
|
||||
0.53125 0.18420084971875
|
||||
0.39979807890035 0.24774225329947
|
||||
0.24774225329947 0.39979807890035
|
||||
0.12829915028125 0.53125
|
||||
0.18420084971875 0.53125
|
||||
0.53125 0.22738728757031
|
||||
0.53125 0.24136271242969
|
||||
0.41294327101031 0.27609302796952
|
||||
0.27609302796952 0.41294327101031
|
||||
0.22738728757031 0.53125
|
||||
0.24136271242969 0.53125
|
||||
0.53125 0.28454915028125
|
||||
0.53125 0.34045084971875
|
||||
0.46552403945017 0.38949612664974
|
||||
0.38949612664974 0.46552403945017
|
||||
0.28454915028125 0.53125
|
||||
0.34045084971875 0.53125
|
||||
0.53125 0.38363728757031
|
||||
0.53125 0.39761271242969
|
||||
0.47866923156014 0.41784690131979
|
||||
0.41784690131979 0.47866923156014
|
||||
0.38363728757031 0.53125
|
||||
0.39761271242969 0.53125
|
||||
0.53125 0.44079915028125
|
||||
0.53125 0.49670084971875
|
||||
0.44079915028125 0.53125
|
||||
0.49670084971875 0.53125
|
||||
0.53988728757031 0.025911862710939
|
||||
0.55386271242969 0.067838137289061
|
||||
0.53988728757031 0.09375
|
||||
0.55386271242969 0.09375
|
||||
0.59704915028125 0.12829915028125
|
||||
0.65295084971875 0.18420084971875
|
||||
0.57443643785157 0.21875
|
||||
0.64431356214843 0.21875
|
||||
0.69613728757031 0.22738728757031
|
||||
0.71011271242969 0.24136271242969
|
||||
0.58307372542188 0.25
|
||||
0.66692627457812 0.25
|
||||
0.75329915028125 0.28454915028125
|
||||
0.80920084971875 0.34045084971875
|
||||
0.61762287570313 0.375
|
||||
0.75737712429687 0.375
|
||||
0.85238728757031 0.38363728757031
|
||||
0.86636271242969 0.39761271242969
|
||||
0.62626016327344 0.40625
|
||||
0.77998983672656 0.40625
|
||||
0.90954915028125 0.44079915028125
|
||||
0.96545084971875 0.49670084971875
|
||||
0.6608093135547 0.53125
|
||||
0.8704406864453 0.53125
|
||||
1 0.025911862710939
|
||||
1 0.067838137289061
|
||||
0.68342202598438 0.09375
|
||||
0.87907797401562 0.09375
|
||||
0.6608093135547 0
|
||||
0.8704406864453 0
|
||||
1 0.11966186271094
|
||||
1 0.16158813728906
|
||||
0.77387287570313 0.21011271242969
|
||||
0.91362712429687 0.19613728757031
|
||||
1 0.20477457514063
|
||||
1 0.23272542485937
|
||||
0.79648558813282 0.25
|
||||
0.92226441186718 0.25
|
||||
1 0.27591186271094
|
||||
1 0.31783813728906
|
||||
0.88693643785157 0.36636271242969
|
||||
0.95681356214843 0.35238728757031
|
||||
1 0.36102457514063
|
||||
1 0.38897542485937
|
||||
0.90954915028125 0.40625
|
||||
0.96545084971875 0.40625
|
||||
1 0.44079915028125
|
||||
1 0.49670084971875
|
||||
0.09375 0.6608093135547
|
||||
0.09375 0.8704406864453
|
||||
0.025911862710939 1
|
||||
0.067838137289061 1
|
||||
0 0.6608093135547
|
||||
0 0.8704406864453
|
||||
0.21875 0.6608093135547
|
||||
0.21875 0.8704406864453
|
||||
0.12829915028125 1
|
||||
0.18420084971875 1
|
||||
0.25 0.6608093135547
|
||||
0.25 0.8704406864453
|
||||
0.22738728757031 1
|
||||
0.24136271242969 1
|
||||
0.375 0.6608093135547
|
||||
0.375 0.8704406864453
|
||||
0.28454915028125 1
|
||||
0.34045084971875 1
|
||||
0.40625 0.6608093135547
|
||||
0.40625 0.8704406864453
|
||||
0.38363728757031 1
|
||||
0.39761271242969 1
|
||||
0.53125 0.6608093135547
|
||||
0.53125 0.8704406864453
|
||||
0.44079915028125 1
|
||||
0.49670084971875 1
|
||||
1 0.6608093135547
|
||||
1 0.8704406864453
|
||||
0.6608093135547 1
|
||||
0.8704406864453 1
|
||||
0.14782497614169 0.14782497614169
|
||||
0.3364183509774 0.10629113008478
|
||||
0.3439701728879 0.12590539815918
|
||||
0.10629113008478 0.3364183509774
|
||||
0.12590539815918 0.3439701728879
|
||||
0.36175027742635 0.16568300020856
|
||||
0.38526511193449 0.21639840771017
|
||||
0.16568300020856 0.36175027742635
|
||||
0.21639840771017 0.38526511193449
|
||||
0.40343132064181 0.2555782146968
|
||||
0.40931002926885 0.2682570665722
|
||||
0.2555782146968 0.40343132064181
|
||||
0.2682570665722 0.40931002926885
|
||||
0.42747623797617 0.30743687355882
|
||||
0.45099107248431 0.35815228106044
|
||||
0.30743687355882 0.42747623797617
|
||||
0.35815228106044 0.45099107248431
|
||||
0.46915728119164 0.39733208804706
|
||||
0.47503598981867 0.41001093992246
|
||||
0.39733208804706 0.46915728119164
|
||||
0.41001093992246 0.47503598981867
|
||||
0.47232443490112 0.47232443490112
|
||||
0.54166666666667 0.0625
|
||||
0.57886271242969 0.12829915028125
|
||||
0.61931356214843 0.18420084971875
|
||||
0.54943643785157 0.12829915028125
|
||||
0.56488728757031 0.18420084971875
|
||||
0.65056356214843 0.22738728757031
|
||||
0.66067627457812 0.24136271242969
|
||||
0.57682372542188 0.22738728757031
|
||||
0.58068643785157 0.24136271242969
|
||||
0.69192627457812 0.28454915028125
|
||||
0.73237712429687 0.34045084971875
|
||||
0.59262287570313 0.28454915028125
|
||||
0.60807372542188 0.34045084971875
|
||||
0.76362712429687 0.38363728757031
|
||||
0.77373983672656 0.39761271242969
|
||||
0.62001016327344 0.38363728757031
|
||||
0.62387287570313 0.39761271242969
|
||||
0.80498983672656 0.44079915028125
|
||||
0.8454406864453 0.49670084971875
|
||||
0.6358093135547 0.44079915028125
|
||||
0.65126016327344 0.49670084971875
|
||||
0.87282797401562 0.025911862710939
|
||||
0.8766906864453 0.067838137289061
|
||||
0.6670593135547 0.025911862710939
|
||||
0.67717202598438 0.067838137289061
|
||||
0.88862712429687 0.12204915028125
|
||||
0.90407797401562 0.16783813728906
|
||||
0.70842202598438 0.12591186271094
|
||||
0.74887287570313 0.17795084971875
|
||||
0.91601441186718 0.21102457514063
|
||||
0.91987712429687 0.23511271242969
|
||||
0.78012287570313 0.22113728757031
|
||||
0.79023558813282 0.23897542485937
|
||||
0.93181356214843 0.27829915028125
|
||||
0.94726441186718 0.32408813728906
|
||||
0.82148558813282 0.28216186271094
|
||||
0.86193643785157 0.33420084971875
|
||||
0.95920084971875 0.36727457514063
|
||||
0.96306356214843 0.39136271242969
|
||||
0.89318643785157 0.37738728757031
|
||||
0.90329915028125 0.39522542485937
|
||||
0.95833333333333 0.44791666666667
|
||||
0.025911862710939 0.6608093135547
|
||||
0.067838137289061 0.6608093135547
|
||||
0.025911862710939 0.8704406864453
|
||||
0.067838137289061 0.8704406864453
|
||||
0.12829915028125 0.6608093135547
|
||||
0.18420084971875 0.6608093135547
|
||||
0.12829915028125 0.8704406864453
|
||||
0.18420084971875 0.8704406864453
|
||||
0.22738728757031 0.6608093135547
|
||||
0.24136271242969 0.6608093135547
|
||||
0.22738728757031 0.8704406864453
|
||||
0.24136271242969 0.8704406864453
|
||||
0.28454915028125 0.6608093135547
|
||||
0.34045084971875 0.6608093135547
|
||||
0.28454915028125 0.8704406864453
|
||||
0.34045084971875 0.8704406864453
|
||||
0.38363728757031 0.6608093135547
|
||||
0.39761271242969 0.6608093135547
|
||||
0.38363728757031 0.8704406864453
|
||||
0.39761271242969 0.8704406864453
|
||||
0.44079915028125 0.6608093135547
|
||||
0.49670084971875 0.6608093135547
|
||||
0.44079915028125 0.8704406864453
|
||||
0.49670084971875 0.8704406864453
|
||||
0.6608093135547 0.6608093135547
|
||||
0.8704406864453 0.6608093135547
|
||||
0.6608093135547 0.8704406864453
|
||||
0.8704406864453 0.8704406864453
|
||||
@@ -1,46 +0,0 @@
|
||||
MFEM NURBS mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# SEGMENT = 1
|
||||
# SQUARE = 3
|
||||
# CUBE = 5
|
||||
#
|
||||
|
||||
dimension
|
||||
1
|
||||
|
||||
elements
|
||||
1
|
||||
1 1 0 1
|
||||
|
||||
boundary
|
||||
2
|
||||
1 0 0
|
||||
2 0 1
|
||||
|
||||
edges
|
||||
1
|
||||
0 0 1
|
||||
|
||||
vertices
|
||||
2
|
||||
|
||||
knotvectors
|
||||
1
|
||||
1 2 0 0 1 1
|
||||
|
||||
weights
|
||||
1
|
||||
1
|
||||
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: NURBS1
|
||||
VDim: 1
|
||||
Ordering: 1
|
||||
|
||||
0
|
||||
1
|
||||
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v4.5.3
|
||||
PROJECT_NUMBER = v4.5.1
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
@@ -795,7 +795,6 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/common \
|
||||
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
|
||||
@MFEM_SOURCE_DIR@/miniapps/gslib \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/kernels \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/materials \
|
||||
@@ -811,10 +810,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/shifted \
|
||||
@MFEM_SOURCE_DIR@/miniapps/solvers \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tools \
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys \
|
||||
@MFEM_SOURCE_DIR@/miniapps/spde \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg/util
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys
|
||||
|
||||
# This tag can be used to specify the character encoding of the source files
|
||||
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
|
||||
|
||||
@@ -39,7 +39,7 @@ namespace mfem {
|
||||
* - Device
|
||||
* - Memory
|
||||
* - MemoryManager
|
||||
* - mfem::forall functions in forall.hpp
|
||||
* - MFEM_FORALL macro in forall.hpp
|
||||
*
|
||||
* <H3>Example codes</H3>
|
||||
* - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
|
||||
@@ -105,8 +105,6 @@ namespace mfem {
|
||||
* - <a class="el" href="ex32p_8cpp_source.html">Example 32p</a>: parallel anisotropic Maxwell eigensolver
|
||||
* - <a class="el" href="ex33_8cpp_source.html">Example 33</a>: nodal H1 FEM for the fractional Laplacian problem
|
||||
* - <a class="el" href="ex33p_8cpp_source.html">Example 33p</a>: parallel nodal H1 FEM for the fractional Laplacian problem
|
||||
* - <a class="el" href="ex36_8cpp_source.html">Example 36</a>: Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex36p_8cpp_source.html">Example 36p</a>: parallel Proximal Galerkin FEM for the obstacle problem
|
||||
*
|
||||
* <H4>AmgX Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -188,7 +186,6 @@ namespace mfem {
|
||||
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
|
||||
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
|
||||
* - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
|
||||
* - <a class="el" href="mesh-quality_8cpp_source.html">Mesh Quality</a>: visualize and check mesh quality
|
||||
* - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
|
||||
* - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
|
||||
* - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
|
||||
@@ -201,15 +198,12 @@ namespace mfem {
|
||||
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
|
||||
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
|
||||
* - <a class="el" href="extrapolate_8cpp_source.html">Extrapolation</a>: PDE-based extrapolation of finite element functions
|
||||
* - <a class="el" href="block-solvers_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
|
||||
* - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
|
||||
* - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
*
|
||||
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
|
||||
*/
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
+3
-18
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -40,8 +40,6 @@ list(APPEND ALL_EXE_SRCS
|
||||
ex30.cpp
|
||||
ex31.cpp
|
||||
ex33.cpp
|
||||
ex34.cpp
|
||||
ex36.cpp
|
||||
)
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -79,9 +77,6 @@ if (MFEM_USE_MPI)
|
||||
ex31p.cpp
|
||||
ex32p.cpp
|
||||
ex33p.cpp
|
||||
ex34p.cpp
|
||||
ex35p.cpp
|
||||
ex36p.cpp
|
||||
)
|
||||
endif()
|
||||
|
||||
@@ -124,10 +119,9 @@ if (MFEM_ENABLE_TESTING)
|
||||
# Add CUDA/HIP tests.
|
||||
set(DEVICE_EXAMPLES
|
||||
# serial examples with device support:
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
|
||||
# parallel examples with device support:
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p
|
||||
ex34p ex35p)
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p)
|
||||
set(MFEM_TEST_DEVICE)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_TEST_DEVICE "cuda")
|
||||
@@ -167,15 +161,6 @@ if (MFEM_ENABLE_TESTING)
|
||||
$<TARGET_FILE:ex11p> "-no-vis" "--superlu"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
|
||||
# If MUMPS is enabled, add a test run that uses it.
|
||||
if (MFEM_USE_MUMPS)
|
||||
add_test(NAME ex25p_mumps_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Include the examples/amgx directory if AmgX is enabled
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,907 +0,0 @@
|
||||
#include "mfem.hpp"
|
||||
#include "IPsolver.hpp"
|
||||
#include "problems.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <cstdlib>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
|
||||
|
||||
InteriorPointSolver::InteriorPointSolver(OptProblem * Problem, ParFiniteElementSpace *Vhin)
|
||||
: problem(Problem), block_offsetsumlz(5), block_offsetsuml(4), block_offsetsx(3),
|
||||
saveLogBarrierIterates(false), Vh(Vhin)
|
||||
{
|
||||
tol = 1.e-2;
|
||||
max_iter = 20;
|
||||
mu_k = 1.0;
|
||||
|
||||
sMax = 1.e2;
|
||||
kSig = 1.e10; // control deviation from primal Hessian
|
||||
tauMin = 0.8; // control rate at which iterates can approach the boundary
|
||||
eta = 1.e-4; // backtracking constant
|
||||
thetaMin = 1.e-4; // allowed violation of the equality constraints
|
||||
|
||||
// constants in line-step A-5.4
|
||||
delta = 1.0;
|
||||
sTheta = 1.1;
|
||||
sPhi = 2.3;
|
||||
|
||||
// control the rate at which the penalty parameter is decreased
|
||||
kMu = 0.2;
|
||||
thetaMu = 1.5;
|
||||
|
||||
|
||||
thetaMax = 1.e6; // maximum constraint violation
|
||||
// data for the second order correction
|
||||
kSoc = 0.99;
|
||||
|
||||
// equation (18)
|
||||
gTheta = 1.e-5;
|
||||
gPhi = 1.e-5;
|
||||
|
||||
kEps = 1.e1;
|
||||
|
||||
dimU = problem->GetDimU();
|
||||
dimM = problem->GetDimM();
|
||||
dimC = problem->GetDimC();
|
||||
ckSoc.SetSize(dimC);
|
||||
|
||||
block_offsetsumlz[0] = 0;
|
||||
block_offsetsumlz[1] = dimU; // u
|
||||
block_offsetsumlz[2] = dimM; // m
|
||||
block_offsetsumlz[3] = dimC; // lambda
|
||||
block_offsetsumlz[4] = dimM; // zl
|
||||
block_offsetsumlz.PartialSum();
|
||||
|
||||
for(int i = 0; i < block_offsetsuml.Size(); i++) { block_offsetsuml[i] = block_offsetsumlz[i]; }
|
||||
for(int i = 0; i < block_offsetsx.Size(); i++) { block_offsetsx[i] = block_offsetsuml[i] ; }
|
||||
|
||||
// lower-bound for the inequality constraint m >= ml
|
||||
ml = problem->Getml();
|
||||
|
||||
lk.SetSize(dimC); lk = 0.0;
|
||||
zlk.SetSize(dimM); zlk = 0.0;
|
||||
mf.SetSize(dimM); mf = 0.0;
|
||||
|
||||
linSolver = 0;
|
||||
MyRank = 0;
|
||||
iAmRoot = MyRank == 0 ? true : false;
|
||||
}
|
||||
|
||||
double InteriorPointSolver::MaxStepSize(Vector &x, Vector &xl, Vector &xhat, double tau)
|
||||
{
|
||||
double alphaMaxloc = 1.0;
|
||||
double alphaTmp;
|
||||
for(int i = 0; i < x.Size(); i++)
|
||||
{
|
||||
if( xhat(i) < 0. )
|
||||
{
|
||||
alphaTmp = -1. * tau * (x(i) - xl(i)) / xhat(i);
|
||||
alphaMaxloc = min(alphaMaxloc, alphaTmp);
|
||||
}
|
||||
}
|
||||
|
||||
// alphaMaxloc is the local maximum step size which is
|
||||
// distinct on each MPI process. Need to compute
|
||||
// the global maximum step size
|
||||
double alphaMaxglb;
|
||||
alphaMaxglb = alphaMaxloc;
|
||||
return alphaMaxglb;
|
||||
}
|
||||
|
||||
double InteriorPointSolver::MaxStepSize(Vector &x, Vector &xhat, double tau)
|
||||
{
|
||||
Vector zero(x.Size()); zero = 0.0;
|
||||
return MaxStepSize(x, zero, xhat, tau);
|
||||
}
|
||||
|
||||
|
||||
void InteriorPointSolver::Mult(const Vector &x0, Vector &xf)
|
||||
{
|
||||
BlockVector x0block(block_offsetsx); x0block = 0.0;
|
||||
x0block.GetBlock(0).Set(1.0, x0);
|
||||
// hard coded initialization :(
|
||||
x0block.GetBlock(1) = 1.0;
|
||||
x0block.GetBlock(1).Add(1.0, ml);
|
||||
BlockVector xfblock(block_offsetsx); xfblock = 0.0;
|
||||
Mult(x0block, xfblock);
|
||||
xf.Set(1.0, xfblock.GetBlock(0));
|
||||
mf.Set(1.0, xfblock.GetBlock(1));
|
||||
}
|
||||
|
||||
void InteriorPointSolver::Mult(const BlockVector &x0, BlockVector &xf)
|
||||
{
|
||||
converged = false;
|
||||
IPNewtonKrylovIters.open("IPNewtonKrylovIters.dat", ios::out | ios::trunc);
|
||||
BlockVector xk(block_offsetsx), xhat(block_offsetsx); xk = 0; xhat = 0.0;
|
||||
BlockVector Xk(block_offsetsumlz), Xhat(block_offsetsumlz); Xk = 0.0; Xhat = 0.0;
|
||||
BlockVector Xhatuml(block_offsetsuml); Xhatuml = 0.0;
|
||||
Vector zlhat(dimM); zlhat = 0.0;
|
||||
|
||||
xk.GetBlock(0).Set(1.0, x0.GetBlock(0));
|
||||
xk.GetBlock(1).Set(1.0, x0.GetBlock(1));
|
||||
// running estimate of the final values of the Lagrange multipliers
|
||||
lk = 0.0;
|
||||
zlk = 0.0;
|
||||
|
||||
for(int i = 0; i < dimM; i++)
|
||||
{
|
||||
zlk(i) = 1.e1 * mu_k / (xk(i+dimU) - ml(i));
|
||||
}
|
||||
|
||||
Xk.GetBlock(0).Set(1.0, xk.GetBlock(0));
|
||||
Xk.GetBlock(1).Set(1.0, xk.GetBlock(1));
|
||||
Xk.GetBlock(2).Set(1.0, lk);
|
||||
Xk.GetBlock(3).Set(1.0, zlk);
|
||||
|
||||
/* set theta0 = theta(x0)
|
||||
* thetaMin
|
||||
* thetaMax
|
||||
* when theta(xk) < thetaMin and the switching condition holds
|
||||
* then we ask for the Armijo sufficient decrease of the barrier
|
||||
* objective to be satisfied, in order to accept the trial step length alphakl
|
||||
*
|
||||
* thetaMax controls how the filter is initialized for each log-barrier subproblem
|
||||
* F0 = {(th, phi) s.t. th > thetaMax}
|
||||
* that is the filter does not allow for iterates where the constraint violation
|
||||
* is larger than that of thetaMax
|
||||
*/
|
||||
double theta0 = theta(xk);
|
||||
thetaMin = 1.e-4 * max(1.0, theta0);
|
||||
thetaMax = 1.e8 * thetaMin;
|
||||
|
||||
double Eeval, maxBarrierSolves, Eevalmu0;
|
||||
bool printOptimalityError; // control optimality error print to console for log-barrier subproblems
|
||||
|
||||
maxBarrierSolves = 10;
|
||||
|
||||
for(jOpt = 0; jOpt < max_iter; jOpt++)
|
||||
{
|
||||
if(iAmRoot)
|
||||
{
|
||||
cout << "interior-point solve step " << jOpt << endl;
|
||||
}
|
||||
// A-2. Check convergence of overall optimization problem
|
||||
printOptimalityError = false;
|
||||
Eevalmu0 = E(xk, lk, zlk, printOptimalityError);
|
||||
if(Eevalmu0 < tol)
|
||||
{
|
||||
converged = true;
|
||||
if(iAmRoot)
|
||||
{
|
||||
IPNewtonKrylovIters.close();
|
||||
cout << "solved optimization problem :)\n";
|
||||
}
|
||||
break;
|
||||
}
|
||||
|
||||
if(jOpt > 0) { maxBarrierSolves = 1; }
|
||||
|
||||
for(int i = 0; i < maxBarrierSolves; i++)
|
||||
{
|
||||
// A-3. Check convergence of the barrier subproblem
|
||||
printOptimalityError = true;
|
||||
Eeval = E(xk, lk, zlk, mu_k, printOptimalityError);
|
||||
if(Eeval < kEps * mu_k)
|
||||
{
|
||||
if(iAmRoot)
|
||||
{
|
||||
cout << "solved barrier subproblem :), for mu = " << mu_k << endl;
|
||||
}
|
||||
// A-3.1. Recompute the barrier parameter
|
||||
mu_k = max(tol / 10., min(kMu * mu_k, pow(mu_k, thetaMu)));
|
||||
// A-3.2. Re-initialize the filter
|
||||
F1.DeleteAll();
|
||||
F2.DeleteAll();
|
||||
}
|
||||
else
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
// A-4. Compute the search direction
|
||||
// solve for (uhat, mhat, lhat)
|
||||
if(iAmRoot)
|
||||
{
|
||||
cout << "\n** A-4. IP-Newton solve **\n";
|
||||
}
|
||||
zlhat = 0.0; Xhatuml = 0.0;
|
||||
// why do we have Xhatuml ....???
|
||||
// TO DO: remove Xhatuml in favor of passing Xhat
|
||||
IPNewtonSolve(xk, lk, zlk, zlhat, Xhatuml, mu_k, false);
|
||||
|
||||
|
||||
// assign data stack, X = (u, m, l, zl)
|
||||
Xk = 0.0;
|
||||
Xk.GetBlock(0).Set(1.0, xk.GetBlock(0));
|
||||
Xk.GetBlock(1).Set(1.0, xk.GetBlock(1));
|
||||
Xk.GetBlock(2).Set(1.0, lk);
|
||||
Xk.GetBlock(3).Set(1.0, zlk);
|
||||
|
||||
// assign data stack, Xhat = (uhat, mhat, lhat, zlhat)
|
||||
Xhat = 0.0;
|
||||
for(int i = 0; i < 3; i++)
|
||||
{
|
||||
Xhat.GetBlock(i).Set(1.0, Xhatuml.GetBlock(i));
|
||||
}
|
||||
Xhat.GetBlock(3).Set(1.0, zlhat);
|
||||
|
||||
|
||||
// A-5. Backtracking line search.
|
||||
if(iAmRoot)
|
||||
{
|
||||
cout << "\n** A-5. Linesearch **\n";
|
||||
cout << "mu = " << mu_k << endl;
|
||||
}
|
||||
lineSearch(Xk, Xhat, mu_k);
|
||||
|
||||
if(lineSearchSuccess)
|
||||
{
|
||||
if(iAmRoot)
|
||||
{
|
||||
cout << "lineSearch successful :)\n";
|
||||
}
|
||||
if(!switchCondition || !sufficientDecrease)
|
||||
{
|
||||
F1.Append( (1. - gTheta) * thx0);
|
||||
F2.Append( phx0 - gPhi * thx0);
|
||||
}
|
||||
// ----- A-6: Accept the trial point
|
||||
// print info regarding zl...
|
||||
xk.GetBlock(0).Add(alpha, Xhat.GetBlock(0));
|
||||
xk.GetBlock(1).Add(alpha, Xhat.GetBlock(1));
|
||||
lk.Add(alpha, Xhat.GetBlock(2));
|
||||
zlk.Add(alphaz, Xhat.GetBlock(3));
|
||||
projectZ(xk, zlk, mu_k);
|
||||
}
|
||||
else
|
||||
{
|
||||
if(iAmRoot)
|
||||
{
|
||||
cout << "lineSearch not successful :(\n";
|
||||
cout << "attempting feasibility restoration with theta = " << thx0 << endl;
|
||||
cout << "no feasibility restoration implemented, exiting now \n";
|
||||
}
|
||||
break;
|
||||
//cout << "feasibility restoration!!! :( :( :(\n";
|
||||
//problem->feasibilityRestoration(x, 1.e-12);
|
||||
// break;
|
||||
}
|
||||
//
|
||||
if(jOpt + 1 == max_iter && iAmRoot)
|
||||
{
|
||||
cout << "maximum optimization iterations :(\n";
|
||||
IPNewtonKrylovIters.close();
|
||||
}
|
||||
}
|
||||
// done with optimization routine, just reassign data to xf reference so
|
||||
// that the application code has access to the optimal point
|
||||
xf = 0.0;
|
||||
xf.GetBlock(0).Set(1.0, xk.GetBlock(0));
|
||||
xf.GetBlock(1).Set(1.0, xk.GetBlock(1));
|
||||
}
|
||||
|
||||
void InteriorPointSolver::FormIPNewtonMat(BlockVector & x, Vector & l, Vector &zl, BlockOperator &Ak)
|
||||
{
|
||||
// WARNING: Huu, Hum, Hmu, Hmm should all be Hessian terms of the Lagrangian, currently we
|
||||
// them by Hessian terms of the objective function and neglect the Hessian of l^T c
|
||||
|
||||
Huu = problem->Duuf(x); Hum = problem->Dumf(x);
|
||||
Hmu = problem->Dmuf(x); Hmm = problem->Dmmf(x);
|
||||
|
||||
Vector DiagLogBar(dimM); DiagLogBar = 0.0;
|
||||
for(int ii = 0; ii < dimM; ii++)
|
||||
{
|
||||
DiagLogBar(ii) = zl(ii) / (x(ii+dimU) - ml(ii));
|
||||
}
|
||||
if(saveLogBarrierIterates)
|
||||
{
|
||||
std::ofstream diagStream;
|
||||
char diagString[100];
|
||||
snprintf(diagString, 100, "logBarrierHessiandata/D%d.dat", jOpt);
|
||||
diagStream.open(diagString, ios::out | ios::trunc);
|
||||
for(int ii = 0; ii < dimM; ii++)
|
||||
{
|
||||
diagStream << setprecision(30) << DiagLogBar(ii) << endl;
|
||||
}
|
||||
diagStream.close();
|
||||
}
|
||||
|
||||
delete Wmm;
|
||||
if(Hmm != nullptr)
|
||||
{
|
||||
SparseMatrix * D = new SparseMatrix(DiagLogBar);
|
||||
Wmm = Add(*Hmm, *D);
|
||||
delete D;
|
||||
}
|
||||
else
|
||||
{
|
||||
Wmm = new SparseMatrix(DiagLogBar);
|
||||
}
|
||||
|
||||
delete JuT;
|
||||
delete JmT;
|
||||
Ju = problem->Duc(x); JuT = Transpose(*Ju);
|
||||
Jm = problem->Dmc(x); JmT = Transpose(*Jm);
|
||||
|
||||
// IP-Newton system matrix
|
||||
// Ak = [[H_(u,u) H_(u,m) J_u^T]
|
||||
// [H_(m,u) W_(m,m) J_m^T]
|
||||
// [ J_u J_m 0 ]]
|
||||
|
||||
Ak.SetBlock(0, 0, Huu); Ak.SetBlock(0, 2, JuT);
|
||||
Ak.SetBlock(1, 1, Wmm); Ak.SetBlock(1, 2, JmT);
|
||||
Ak.SetBlock(2, 0, Ju); Ak.SetBlock(2, 1, Jm);
|
||||
|
||||
if(Hum != nullptr) { Ak.SetBlock(0, 1, Hum); Ak.SetBlock(1, 0, Hmu); }
|
||||
}
|
||||
|
||||
|
||||
// perturbed KKT system solve
|
||||
// determine the search direction
|
||||
void InteriorPointSolver::IPNewtonSolve(BlockVector &x, Vector &l, Vector &zl, Vector &zlhat, BlockVector &Xhat, double mu, bool socSolve)
|
||||
{
|
||||
// solve A x = b, where A is the IP-Newton matrix
|
||||
BlockOperator A(block_offsetsuml, block_offsetsuml); BlockVector b(block_offsetsuml); b = 0.0;
|
||||
FormIPNewtonMat(x, l, zl, A);
|
||||
|
||||
// [grad_u phi + Ju^T l]
|
||||
// b = - [grad_m phi + Jm^T l]
|
||||
// [ c ]
|
||||
BlockVector gradphi(block_offsetsx); gradphi = 0.0;
|
||||
BlockVector JTl(block_offsetsx); JTl = 0.0;
|
||||
Dxphi(x, mu, gradphi);
|
||||
|
||||
(A.GetBlock(0,2)).Mult(l, JTl.GetBlock(0));
|
||||
(A.GetBlock(1,2)).Mult(l, JTl.GetBlock(1));
|
||||
|
||||
for(int ii = 0; ii < 2; ii++)
|
||||
{
|
||||
b.GetBlock(ii).Set(1.0, gradphi.GetBlock(ii));
|
||||
b.GetBlock(ii).Add(1.0, JTl.GetBlock(ii));
|
||||
}
|
||||
if(!socSolve)
|
||||
{
|
||||
problem->c(x, b.GetBlock(2));
|
||||
}
|
||||
else
|
||||
{
|
||||
b.GetBlock(2).Set(1.0, ckSoc);
|
||||
}
|
||||
b *= -1.0;
|
||||
Xhat = 0.0;
|
||||
|
||||
#ifdef MFEM_USE_SUITESPARSE
|
||||
// Direct solve for IP-Newton saddle-point system
|
||||
// A = [ [ Huu 0 Ju^T]
|
||||
// [ 0 D -I ]
|
||||
// [ Ju -I 0 ]]
|
||||
if(linSolver == 0)
|
||||
{
|
||||
BlockMatrix ABlockMatrix(block_offsetsuml, block_offsetsuml);
|
||||
for(int ii = 0; ii < 3; ii++)
|
||||
{
|
||||
for(int jj = 0; jj < 3; jj++)
|
||||
{
|
||||
if(!A.IsZeroBlock(ii, jj))
|
||||
{
|
||||
ABlockMatrix.SetBlock(ii, jj, dynamic_cast<SparseMatrix *>(&(A.GetBlock(ii, jj))));
|
||||
}
|
||||
}
|
||||
}
|
||||
/* direct solve of the 3x3 IP-Newton linear system */
|
||||
UMFPackSolver ASolver;
|
||||
SparseMatrix *ASparse = ABlockMatrix.CreateMonolithic();
|
||||
ASolver.SetOperator(*ASparse);
|
||||
ASolver.Mult(b, Xhat);
|
||||
|
||||
Vector residual(Xhat.Size());
|
||||
ASparse->Mult(Xhat, residual);
|
||||
residual.Add(-1.0, b);
|
||||
delete ASparse;
|
||||
}
|
||||
else if(linSolver == 1)
|
||||
{
|
||||
// Direct solve for 0,0 Schur complement of IP-Newton system, Huu + Ju^T Wmm Ju,
|
||||
// where Wmm = D for contact problems
|
||||
SparseMatrix * Huuloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(0, 0))));
|
||||
SparseMatrix * Wmmloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(1, 1))));
|
||||
SparseMatrix * Juloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(2, 0))));
|
||||
SparseMatrix * JuTloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(0, 2))));
|
||||
Vector Dvec(dimM); Dvec = 0.0;
|
||||
Vector one(dimM); one = 1.0;
|
||||
Wmmloc->Mult(one, Dvec);
|
||||
SparseMatrix *JuTDJu = Mult_AtDA(*Juloc, Dvec); // Ju^T D Ju
|
||||
SparseMatrix *Areduced = Add(*Huuloc, *JuTDJu); // Huu + Ju^T D Ju
|
||||
|
||||
|
||||
/* prepare the reduced rhs */
|
||||
// breduced = bu + Ju^T (bm + Wmm bl)
|
||||
Vector breduced(dimU); breduced = 0.0;
|
||||
Vector tempVec(dimM); tempVec = 0.0;
|
||||
Wmmloc->Mult(b.GetBlock(2), tempVec);
|
||||
tempVec.Add(1.0, b.GetBlock(1));
|
||||
JuTloc->Mult(tempVec, breduced);
|
||||
breduced.Add(1.0, b.GetBlock(0));
|
||||
|
||||
// solve the reduced linear system
|
||||
UMFPackSolver AreducedSolver;
|
||||
AreducedSolver.SetOperator(*Areduced);
|
||||
AreducedSolver.Mult(breduced, Xhat.GetBlock(0));
|
||||
|
||||
// now propagate solved uhat to obtain mhat and lhat
|
||||
// xm = Ju xu - bl
|
||||
Juloc->Mult(Xhat.GetBlock(0), Xhat.GetBlock(1));
|
||||
Xhat.GetBlock(1).Add(-1.0, b.GetBlock(2));
|
||||
|
||||
// xl = Wmm xm - bm
|
||||
Wmmloc->Mult(Xhat.GetBlock(1), Xhat.GetBlock(2));
|
||||
Xhat.GetBlock(2).Add(-1.0, b.GetBlock(1));
|
||||
|
||||
delete Wmmloc;
|
||||
delete Huuloc;
|
||||
delete JuTDJu;
|
||||
delete Juloc;
|
||||
delete Areduced;
|
||||
}
|
||||
#else
|
||||
MFEM_VERIFY(linSolver > 1, "linSolver = 0, 1 require MFEM_USE_SUITESPARSE=YES");
|
||||
#endif
|
||||
if (linSolver == 2 || linSolver == 3)
|
||||
{
|
||||
// Iterative solve for 0,0 Schur complement of IP-Newton system, Huu + Ju^T Wmm Ju,
|
||||
// where Wmm = D for contact problems
|
||||
// here the iterative solver is a Jacobi-preconditioned CG-solve
|
||||
SparseMatrix * Huuloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(0, 0))));
|
||||
SparseMatrix * Wmmloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(1, 1))));
|
||||
SparseMatrix * Juloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(2, 0))));
|
||||
SparseMatrix * JuTloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(0, 2))));
|
||||
// Vector Dvec(dimM); Dvec = 0.0;
|
||||
// Vector one(dimM); one = 1.0;
|
||||
// Wmmloc->Mult(one, Dvec);
|
||||
|
||||
// SparseMatrix *JuTDJu = Mult_AtDA(*Juloc, Dvec); // Ju^T D Ju
|
||||
SparseMatrix *JuTDJu = RAP(*Juloc,*Wmmloc,*Juloc); // Ju^T D Ju
|
||||
SparseMatrix *Areduced = Add(*Huuloc, *JuTDJu); // Huu + Ju^T D Ju
|
||||
/* prepare the reduced rhs */
|
||||
// breduced = bu + Ju^T (bm + Wmm bl)
|
||||
Vector breduced(dimU); breduced = 0.0;
|
||||
Vector tempVec(dimM); tempVec = 0.0;
|
||||
Wmmloc->Mult(b.GetBlock(2), tempVec);
|
||||
tempVec.Add(1.0, b.GetBlock(1));
|
||||
JuTloc->Mult(tempVec, breduced);
|
||||
breduced.Add(1.0, b.GetBlock(0));
|
||||
|
||||
/* set up an iterative solver */
|
||||
int globalNumRows = dimU;
|
||||
HYPRE_BigInt rowStarts[2];
|
||||
rowStarts[0] = 0;
|
||||
rowStarts[1] = dimU;
|
||||
HypreParMatrix * Ahypre = new HypreParMatrix(MPI_COMM_WORLD, globalNumRows, rowStarts, Areduced);
|
||||
// CGSolver Asolver(MPI_COMM_WORLD);
|
||||
HyprePCG Asolver(MPI_COMM_WORLD);
|
||||
HypreBoomerAMG * Aprec = new HypreBoomerAMG(*Ahypre);
|
||||
Aprec->SetPrintLevel(0);
|
||||
if(linSolver == 3)
|
||||
{
|
||||
Aprec->SetElasticityOptions(Vh);
|
||||
}
|
||||
Aprec->SetSystemsOptions(3,false);
|
||||
|
||||
Asolver.SetOperator(*Ahypre);
|
||||
Asolver.SetPrintLevel(2);
|
||||
Asolver.SetMaxIter(1000);
|
||||
// Asolver.SetResidualConvergenceOptions();
|
||||
Asolver.SetTol(1.e-6);
|
||||
Asolver.SetPreconditioner(*Aprec);
|
||||
// Asolver.SetResidualConvergenceOptions();
|
||||
|
||||
Asolver.Mult(breduced, Xhat.GetBlock(0));
|
||||
int num_iterations;
|
||||
Asolver.GetNumIterations(num_iterations);
|
||||
cgnum_iterations.Append(num_iterations);
|
||||
// int numNewtonKrylovIters = -1;
|
||||
// numNewtonKrylovIters = Asolver.GetNumIterations();
|
||||
// IPNewtonKrylovIters << numNewtonKrylovIters << endl;
|
||||
|
||||
delete Aprec;
|
||||
delete Ahypre;
|
||||
|
||||
// now propagate solved uhat to obtain mhat and lhat
|
||||
// xm = Ju xu - bl
|
||||
Juloc->Mult(Xhat.GetBlock(0), Xhat.GetBlock(1));
|
||||
Xhat.GetBlock(1).Add(-1.0, b.GetBlock(2));
|
||||
|
||||
// // xl = Wmm xm - bm
|
||||
Wmmloc->Mult(Xhat.GetBlock(1), Xhat.GetBlock(2));
|
||||
Xhat.GetBlock(2).Add(-1.0, b.GetBlock(1));
|
||||
|
||||
|
||||
delete Wmmloc;
|
||||
delete Huuloc;
|
||||
delete JuTDJu;
|
||||
delete Juloc;
|
||||
delete Areduced;
|
||||
}
|
||||
else if(linSolver > 2)
|
||||
{
|
||||
// Iterative solve for 0,0 Schur complement of IP-Newton system, Huu + Ju^T Wmm Ju,
|
||||
// where Wmm = D for contact problems
|
||||
// here the iterative solver is a Jacobi-preconditioned CG-solve
|
||||
SparseMatrix * Huuloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(0, 0))));
|
||||
SparseMatrix * Wmmloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(1, 1))));
|
||||
SparseMatrix * Juloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(2, 0))));
|
||||
SparseMatrix * JuTloc = new SparseMatrix(*dynamic_cast<SparseMatrix *>(&(A.GetBlock(0, 2))));
|
||||
Vector Dvec(dimM); Dvec = 0.0;
|
||||
Vector one(dimM); one = 1.0;
|
||||
Wmmloc->Mult(one, Dvec);
|
||||
SparseMatrix *JuTDJu = Mult_AtDA(*Juloc, Dvec); // Ju^T D Ju
|
||||
SparseMatrix *Areduced = Add(*Huuloc, *JuTDJu); // Huu + Ju^T D Ju
|
||||
|
||||
/* prepare the reduced rhs */
|
||||
// breduced = bu + Ju^T (bm + Wmm bl)
|
||||
Vector breduced(dimU); breduced = 0.0;
|
||||
Vector tempVec(dimM); tempVec = 0.0;
|
||||
Wmmloc->Mult(b.GetBlock(2), tempVec);
|
||||
tempVec.Add(1.0, b.GetBlock(1));
|
||||
JuTloc->Mult(tempVec, breduced);
|
||||
breduced.Add(1.0, b.GetBlock(0));
|
||||
|
||||
/* set up an iterative solver */
|
||||
GSSmoother AreducedPrec((SparseMatrix &)(*Areduced));
|
||||
GMRESSolver AreducedSolver;
|
||||
AreducedSolver.SetOperator(*Areduced);
|
||||
AreducedSolver.SetAbsTol(1.e-12);
|
||||
AreducedSolver.SetRelTol(1.e-8);
|
||||
AreducedSolver.SetMaxIter(500);
|
||||
AreducedSolver.SetPreconditioner(AreducedPrec);
|
||||
AreducedSolver.SetPrintLevel(1);
|
||||
AreducedSolver.Mult(breduced, Xhat.GetBlock(0));
|
||||
|
||||
// now propagate solved uhat to obtain mhat and lhat
|
||||
// xm = Ju xu - bl
|
||||
Juloc->Mult(Xhat.GetBlock(0), Xhat.GetBlock(1));
|
||||
Xhat.GetBlock(1).Add(-1.0, b.GetBlock(2));
|
||||
|
||||
// xl = Wmm xm - bm
|
||||
Wmmloc->Mult(Xhat.GetBlock(1), Xhat.GetBlock(2));
|
||||
Xhat.GetBlock(2).Add(-1.0, b.GetBlock(1));
|
||||
|
||||
delete Wmmloc;
|
||||
delete Huuloc;
|
||||
delete JuTDJu;
|
||||
delete Juloc;
|
||||
delete Areduced;
|
||||
}
|
||||
|
||||
|
||||
/* backsolve to determine zlhat */
|
||||
for(int ii = 0; ii < dimM; ii++)
|
||||
{
|
||||
zlhat(ii) = -1.*(zl(ii) + (zl(ii) * Xhat(ii + dimU) - mu) / (x(ii + dimU) - ml(ii)) );
|
||||
}
|
||||
}
|
||||
|
||||
// here Xhat, X will be BlockVectors w.r.t. the 4 partitioning X = (u, m, l, zl)
|
||||
|
||||
void InteriorPointSolver::lineSearch(BlockVector& X0, BlockVector& Xhat, double mu)
|
||||
{
|
||||
double tau = max(tauMin, 1.0 - mu);
|
||||
Vector u0 = X0.GetBlock(0);
|
||||
Vector m0 = X0.GetBlock(1);
|
||||
Vector l0 = X0.GetBlock(2);
|
||||
Vector z0 = X0.GetBlock(3);
|
||||
Vector uhat = Xhat.GetBlock(0);
|
||||
Vector mhat = Xhat.GetBlock(1);
|
||||
Vector lhat = Xhat.GetBlock(2);
|
||||
Vector zhat = Xhat.GetBlock(3);
|
||||
double alphaMax = MaxStepSize(m0, ml, mhat, tau);
|
||||
double alphaMaxz = MaxStepSize(z0, zhat, tau);
|
||||
alphaz = alphaMaxz;
|
||||
|
||||
|
||||
BlockVector x0(block_offsetsx); x0 = 0.0;
|
||||
x0.GetBlock(0).Set(1.0, u0);
|
||||
x0.GetBlock(1).Set(1.0, m0);
|
||||
|
||||
BlockVector xhat(block_offsetsx); xhat = 0.0;
|
||||
xhat.GetBlock(0).Set(1.0, uhat);
|
||||
xhat.GetBlock(1).Set(1.0, mhat);
|
||||
|
||||
BlockVector xtrial(block_offsetsx); xtrial = 0.0;
|
||||
BlockVector Dxphi0(block_offsetsx); Dxphi0 = 0.0;
|
||||
int maxBacktrack = 20;
|
||||
alpha = alphaMax;
|
||||
|
||||
|
||||
Vector ck0(dimC); ck0 = 0.0;
|
||||
Vector zhatsoc(dimM); zhatsoc = 0.0;
|
||||
BlockVector Xhatumlsoc(block_offsetsuml); Xhatumlsoc = 0.0;
|
||||
BlockVector xhatsoc(block_offsetsx); xhatsoc = 0.0;
|
||||
Vector uhatsoc(dimU); uhatsoc = 0.0;
|
||||
Vector mhatsoc(dimM); mhatsoc = 0.0;
|
||||
|
||||
Dxphi(x0, mu, Dxphi0);
|
||||
Dxphi0_xhat = InnerProduct(Dxphi0, xhat);
|
||||
double xhat_L2norm = sqrt(InnerProduct(xhat, xhat));
|
||||
double Dxphi_L2norm = sqrt(InnerProduct(Dxphi0, Dxphi0));
|
||||
descentDirection = Dxphi0_xhat < 0. ? true : false;
|
||||
if(descentDirection)
|
||||
{
|
||||
cout << "is a descent direction for the log-barrier objective\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << "is not a descent direction for the log-barrier objective\n";
|
||||
}
|
||||
cout << "Dxphi^T xhat / (|| Dxphi ||_2 * || xhat ||_2) = " << Dxphi0_xhat / (xhat_L2norm * Dxphi_L2norm) << endl;
|
||||
thx0 = theta(x0);
|
||||
phx0 = phi(x0, mu);
|
||||
|
||||
lineSearchSuccess = false;
|
||||
for(int i = 0; i < maxBacktrack; i++)
|
||||
{
|
||||
cout << "\n--------- alpha = " << alpha << " ---------\n";
|
||||
|
||||
// ----- A-5.2. Compute trial point: xtrial = x0 + alpha_i xhat
|
||||
xtrial.Set(1.0, x0);
|
||||
xtrial.Add(alpha, xhat);
|
||||
|
||||
// ------ A-5.3. if not in filter region go to A.5.4 otherwise go to A-5.5.
|
||||
thxtrial = theta(xtrial);
|
||||
phxtrial = phi(xtrial, mu);
|
||||
filterCheck(thxtrial, phxtrial);
|
||||
if(!inFilterRegion)
|
||||
{
|
||||
cout << "not in filter region :)\n";
|
||||
// ------ A.5.4: Check sufficient decrease
|
||||
if(!descentDirection)
|
||||
{
|
||||
switchCondition = false;
|
||||
}
|
||||
else
|
||||
{
|
||||
switchCondition = (alpha * pow(abs(Dxphi0_xhat), sPhi) > delta * pow(thx0, sTheta)) ? true : false;
|
||||
}
|
||||
cout << "alpha |Dxphi(x0)^T xhat|^sPhi = " << alpha * pow(abs(Dxphi0_xhat), sPhi) << endl;
|
||||
cout << "delta * theta(x0)^sTheta = " << delta * pow(thx0, sTheta) << endl;
|
||||
cout << "theta(x0) = " << thx0 << ", thetaMin = " << thetaMin << endl;
|
||||
cout << "theta(xtrial) = " << thxtrial << ", (1-gTheta) *theta(x0) = " << (1. - gTheta) * thx0 << endl;
|
||||
cout << "phi(xtrial) = " << phxtrial << ", phi(x0) - gPhi *theta(x0) = " << phx0 - gPhi * thx0 << endl;
|
||||
|
||||
// Case I
|
||||
if(thx0 <= thetaMin && switchCondition)
|
||||
{
|
||||
sufficientDecrease = phxtrial <= phx0 + eta * alpha * Dxphi0_xhat ? true : false;
|
||||
if(sufficientDecrease)
|
||||
{
|
||||
if(iAmRoot) { cout << "A-5.4. Case I -- accepted step length.\n"; }
|
||||
// accept the trial step
|
||||
lineSearchSuccess = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if(thxtrial <= (1. - gTheta) * thx0 || phxtrial <= phx0 - gPhi * thx0)
|
||||
{
|
||||
if(iAmRoot) { cout << "A-5.4. Case II -- accepted step length.\n"; }
|
||||
// accept the trial step
|
||||
lineSearchSuccess = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
// A-5.5: Initialize the second-order correction
|
||||
if((!(thx0 < thxtrial)) && i == 0)
|
||||
{
|
||||
cout << "second order correction\n";
|
||||
problem->c(xtrial, ckSoc);
|
||||
problem->c(x0, ck0);
|
||||
ckSoc.Add(alphaMax, ck0);
|
||||
// A-5.6 Compute the second-order correction.
|
||||
IPNewtonSolve(x0, l0, z0, zhatsoc, Xhatumlsoc, mu, true);
|
||||
mhatsoc.Set(1.0, Xhatumlsoc.GetBlock(1));
|
||||
// alphasoc = MaxStepSize(m0, ml, mhatsoc, tau);
|
||||
//WARNING: not complete but currently solver isn't entering this region
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << "in filter region :(\n";
|
||||
}
|
||||
|
||||
// include more if needed
|
||||
alpha *= 0.5;
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
void InteriorPointSolver::projectZ(const Vector &x, Vector &z, double mu)
|
||||
{
|
||||
double zi;
|
||||
double mudivmml;
|
||||
for(int i = 0; i < dimM; i++)
|
||||
{
|
||||
zi = z(i);
|
||||
mudivmml = mu / (x(i + dimU) - ml(i));
|
||||
z(i) = max(min(zi, kSig * mudivmml), mudivmml / kSig);
|
||||
}
|
||||
}
|
||||
|
||||
void InteriorPointSolver::filterCheck(double th, double ph)
|
||||
{
|
||||
inFilterRegion = false;
|
||||
if(th > thetaMax)
|
||||
{
|
||||
inFilterRegion = true;
|
||||
}
|
||||
else
|
||||
{
|
||||
for(int i = 0; i < F1.Size(); i++)
|
||||
{
|
||||
if(th >= F1[i] && ph >= F2[i])
|
||||
{
|
||||
inFilterRegion = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
double InteriorPointSolver::E(const BlockVector &x, const Vector &l, const Vector &zl, double mu, bool print)
|
||||
{
|
||||
double E1, E2, E3;
|
||||
double sc, sd;
|
||||
BlockVector gradL(block_offsetsx); gradL = 0.0; // stationarity grad L = grad f + J^T l - z
|
||||
Vector cx(dimC); cx = 0.0; // feasibility c = c(x)
|
||||
Vector comp(dimM); comp = 0.0; // complementarity M Z - mu 1
|
||||
|
||||
DxL(x, l, zl, gradL);
|
||||
E1 = gradL.Normlinf();
|
||||
|
||||
problem->c(x, cx);
|
||||
E2 = cx.Normlinf();
|
||||
|
||||
for(int ii = 0; ii < dimM; ii++)
|
||||
{
|
||||
comp(ii) = x(dimU + ii) * zl(ii) - mu;
|
||||
}
|
||||
E3 = comp.Normlinf();
|
||||
|
||||
double ll1, zl1;
|
||||
zl1 = zl.Norml1() / double(dimC + dimM);
|
||||
ll1 = l.Norml1();
|
||||
sc = max(sMax, zl1 / (double(dimM)) ) / sMax;
|
||||
sd = max(sMax, (ll1 + zl1) / (double(dimC + dimM))) / sMax;
|
||||
if(iAmRoot && print)
|
||||
{
|
||||
cout << "evaluating optimality error for mu = " << mu << endl;
|
||||
cout << "stationarity measure = " << E1 / sd << endl;
|
||||
cout << "feasibility measure = " << E2 << endl;
|
||||
cout << "complimentarity measure = " << E3 / sc << endl;
|
||||
}
|
||||
return max(max(E1 / sd, E2), E3 / sc);
|
||||
}
|
||||
|
||||
double InteriorPointSolver::E(const BlockVector &x, const Vector &l, const Vector &zl, bool print)
|
||||
{
|
||||
return E(x, l, zl, 0.0, print);
|
||||
}
|
||||
|
||||
double InteriorPointSolver::theta(const BlockVector &x)
|
||||
{
|
||||
Vector cx(dimC); cx = 0.0;
|
||||
problem->c(x, cx);
|
||||
return sqrt(InnerProduct(cx, cx));
|
||||
}
|
||||
|
||||
// log-barrier objective
|
||||
double InteriorPointSolver::phi(const BlockVector &x, double mu)
|
||||
{
|
||||
double fx = problem->CalcObjective(x);
|
||||
double logBarrierLoc = 0.0;
|
||||
for(int i = 0; i < dimM; i++)
|
||||
{
|
||||
logBarrierLoc += log(x(dimU+i)-ml(i));
|
||||
}
|
||||
double logBarrierGlb = 0.0;
|
||||
logBarrierGlb = logBarrierLoc;
|
||||
return fx - mu * logBarrierGlb;
|
||||
}
|
||||
|
||||
|
||||
// gradient of log-barrier objective with respect to x = (u, m)
|
||||
void InteriorPointSolver::Dxphi(const BlockVector &x, double mu, BlockVector &y)
|
||||
{
|
||||
problem->CalcObjectiveGrad(x, y);
|
||||
for(int i = 0; i < dimM; i++)
|
||||
{
|
||||
y(dimU + i) -= mu / (x(dimU + i) - ml(i));
|
||||
}
|
||||
}
|
||||
|
||||
// Lagrangian function evaluation
|
||||
// L(x, l, zl) = f(x) + l^T c(x) - zl^T m
|
||||
double InteriorPointSolver::L(const BlockVector &x, const Vector &l, const Vector &zl)
|
||||
{
|
||||
double fx = problem->CalcObjective(x);
|
||||
Vector cx(dimC); problem->c(x, cx);
|
||||
return (fx + InnerProduct(cx, l) - InnerProduct(x.GetBlock(1), zl));
|
||||
}
|
||||
|
||||
void InteriorPointSolver::DxL(const BlockVector &x, const Vector &l, const Vector &zl, BlockVector &y)
|
||||
{
|
||||
// evaluate the gradient of the objective with respect to the primal variables x = (u, m)
|
||||
BlockVector gradxf(block_offsetsx); gradxf = 0.0;
|
||||
problem->CalcObjectiveGrad(x, gradxf);
|
||||
|
||||
SparseMatrix *Jacu, *Jacm, *JacuT, *JacmT;
|
||||
Jacu = problem->Duc(x); Jacm = problem->Dmc(x);
|
||||
JacuT = Transpose(*Jacu);
|
||||
JacmT = Transpose(*Jacm);
|
||||
JacuT->Mult(l, y.GetBlock(0));
|
||||
JacmT->Mult(l, y.GetBlock(1));
|
||||
delete Jacu; delete JacuT;
|
||||
delete Jacm; delete JacmT;
|
||||
y.Add(1.0, gradxf);
|
||||
(y.GetBlock(1)).Add(-1.0, zl);
|
||||
}
|
||||
|
||||
|
||||
bool InteriorPointSolver::GetConverged() const
|
||||
{
|
||||
return converged;
|
||||
}
|
||||
|
||||
void InteriorPointSolver::SetTol(double Tol)
|
||||
{
|
||||
tol = Tol;
|
||||
}
|
||||
|
||||
void InteriorPointSolver::SetMaxIter(int max_it)
|
||||
{
|
||||
max_iter = max_it;
|
||||
}
|
||||
|
||||
void InteriorPointSolver::SetBarrierParameter(double mu_0)
|
||||
{
|
||||
mu_k = mu_0;
|
||||
}
|
||||
|
||||
void InteriorPointSolver::SaveLogBarrierHessianIterates(bool save)
|
||||
{
|
||||
MFEM_ASSERT(MyRank == 0 || save == false, "currently can only save logbarrier hessian in serial codes");
|
||||
saveLogBarrierIterates = save;
|
||||
}
|
||||
|
||||
void InteriorPointSolver::SetLinearSolver(int LinSolver)
|
||||
{
|
||||
linSolver = LinSolver;
|
||||
}
|
||||
|
||||
|
||||
|
||||
InteriorPointSolver::~InteriorPointSolver()
|
||||
{
|
||||
delete Wmm;
|
||||
delete Huu;
|
||||
delete Hum;
|
||||
delete Hmu;
|
||||
delete Hmm;
|
||||
delete Hum;
|
||||
delete Ju;
|
||||
delete Jm;
|
||||
delete JuT;
|
||||
delete JmT;
|
||||
|
||||
F1.DeleteAll();
|
||||
F2.DeleteAll();
|
||||
block_offsetsx.DeleteAll();
|
||||
block_offsetsumlz.DeleteAll();
|
||||
block_offsetsuml.DeleteAll();
|
||||
ml.SetSize(0);
|
||||
}
|
||||
@@ -1,103 +0,0 @@
|
||||
#include "mfem.hpp"
|
||||
#include "problems.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
|
||||
#ifndef IPSOLVER
|
||||
#define IPSOLVER
|
||||
|
||||
class InteriorPointSolver
|
||||
{
|
||||
protected:
|
||||
OptProblem* problem;
|
||||
double tol;
|
||||
int max_iter;
|
||||
double mu_k; // \mu_k
|
||||
Vector lk, zlk, mf;
|
||||
|
||||
double sMax, kSig, tauMin, eta, thetaMin, delta, sTheta, sPhi, kMu, thetaMu;
|
||||
double thetaMax, kSoc, gTheta, gPhi, kEps;
|
||||
|
||||
// filter
|
||||
Array<double> F1, F2;
|
||||
|
||||
// quantities computed in lineSearch
|
||||
double alpha, alphaz;
|
||||
double thx0, thxtrial;
|
||||
double phx0, phxtrial;
|
||||
bool descentDirection, switchCondition, sufficientDecrease, lineSearchSuccess, inFilterRegion;
|
||||
double Dxphi0_xhat;
|
||||
|
||||
int dimU, dimM, dimC;
|
||||
Array<int> block_offsetsumlz, block_offsetsuml, block_offsetsx;
|
||||
Vector ml;
|
||||
|
||||
Vector ckSoc;
|
||||
SparseMatrix * Huu = nullptr;
|
||||
SparseMatrix * Hum = nullptr;
|
||||
SparseMatrix * Hmu = nullptr;
|
||||
SparseMatrix * Hmm = nullptr;
|
||||
SparseMatrix * Wmm = nullptr;
|
||||
SparseMatrix * Ju = nullptr;
|
||||
SparseMatrix * Jm = nullptr;
|
||||
SparseMatrix * JuT = nullptr;
|
||||
SparseMatrix * JmT = nullptr;;
|
||||
|
||||
int jOpt;
|
||||
bool converged;
|
||||
|
||||
int MyRank;
|
||||
bool iAmRoot;
|
||||
|
||||
bool saveLogBarrierIterates;
|
||||
|
||||
int linSolver;
|
||||
std::ofstream IPNewtonKrylovIters;
|
||||
|
||||
ParFiniteElementSpace *Vh;
|
||||
Array<int> cgnum_iterations;
|
||||
|
||||
|
||||
// not sure if this data is needed or if it can
|
||||
// all be accounted for in the problem class
|
||||
// which variables have equality constraints
|
||||
//Array<int> eqConstrainedVariables;
|
||||
//Array<double> eqConstrainedValues;
|
||||
|
||||
|
||||
|
||||
public:
|
||||
InteriorPointSolver(OptProblem*, ParFiniteElementSpace *);
|
||||
void Mult(const BlockVector& , BlockVector&); // used when the user wants to be aware of bound-constrained variable m >= ml
|
||||
void Mult(const Vector&, Vector &); // useful when the user doesn't need to know about bound-constrained variable m >= ml
|
||||
double MaxStepSize(Vector& , Vector& , Vector& , double);
|
||||
double MaxStepSize(Vector& , Vector& , double);
|
||||
void FormIPNewtonMat(BlockVector& , Vector& , Vector& , BlockOperator &);
|
||||
void IPNewtonSolve(BlockVector& , Vector& , Vector& , Vector&, BlockVector& , double, bool);
|
||||
void lineSearch(BlockVector& , BlockVector& , double);
|
||||
void projectZ(const Vector & , Vector &, double);
|
||||
void filterCheck(double, double);
|
||||
double E(const BlockVector &, const Vector &, const Vector &, double, bool);
|
||||
double E(const BlockVector &, const Vector &, const Vector &, bool);
|
||||
bool GetConverged() const;
|
||||
// TO DO: include Hessian of Lagrangian
|
||||
double theta(const BlockVector &);
|
||||
double phi(const BlockVector &, double);
|
||||
void Dxphi(const BlockVector &, double, BlockVector &);
|
||||
double L(const BlockVector &, const Vector &, const Vector &);
|
||||
void DxL(const BlockVector &, const Vector &, const Vector &, BlockVector &);
|
||||
void SetTol(double);
|
||||
void SetMaxIter(int);
|
||||
void SetBarrierParameter(double);
|
||||
void SaveLogBarrierHessianIterates(bool);
|
||||
void SetLinearSolver(int);
|
||||
Vector GetBoundConstrainedVariable() {return mf;}
|
||||
Array<int> & GetCGIterNumbers() {return cgnum_iterations;}
|
||||
virtual ~InteriorPointSolver();
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -1,17 +0,0 @@
|
||||
# OneProcessAMGContact
|
||||
|
||||
|
||||
|
||||
Be sure to edit the makefile so that it points to a parallel MFEM build
|
||||
|
||||
specifically the MFEM_BUILD_DIR
|
||||
|
||||
|
||||
after building exQPContactBlockTL one can
|
||||
|
||||
1. run the bash script scalingJobArray.bat via `source scalingJobArray.bat' which will populate the CG iterations required to solve
|
||||
various linear systems into the data/ subdirectory
|
||||
2. run the python script data/process.py in order to put the scaling information into the single files algorithmicScaling_Elasticity.dat and algorithmicScaling_noElasticity.dat
|
||||
in order to see the number of average AMG-CG iterations per optimization solve.
|
||||
|
||||
|
||||
@@ -1,274 +0,0 @@
|
||||
// Contact example
|
||||
//
|
||||
// Compile with: make contact
|
||||
//
|
||||
// Sample runs: ./contact -m1 block1.mesh -m2 block2.mesh -at "5 6 7 8"
|
||||
// Sample runs: ./contact -m1 block1_d.mesh -m2 block2_d.mesh -at "5 6 7 8"
|
||||
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <array>
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include "problems.hpp"
|
||||
#include "IPsolver.hpp"
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
Mpi::Init(argc, argv);
|
||||
Hypre::Init();
|
||||
int linSolver = 2;
|
||||
int maxIPMiters = 30;
|
||||
bool iAmRoot = true;
|
||||
int ref_levels = 0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&linSolver, "-linSolver", "--linearSolver", \
|
||||
"IP-Newton linear system solution strategy.");
|
||||
args.AddOption(&maxIPMiters, "-IPMiters", "--IPMiters",\
|
||||
"Maximum number of IPM iterations");
|
||||
args.AddOption(&ref_levels, "-r", "--mesh_refinement", \
|
||||
"Mesh Refinement");
|
||||
|
||||
|
||||
args.Parse();
|
||||
if(!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
if( iAmRoot )
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
}
|
||||
|
||||
// Create an instance of the nlp
|
||||
ExContactBlockTL * contact = new ExContactBlockTL(ref_levels);
|
||||
int ndofs = contact->GetDimD();
|
||||
int nconstraints = contact->GetDimS();
|
||||
std::ofstream problemDimStream;
|
||||
problemDimStream.open("problemDim.dat", ios::out | ios::trunc);
|
||||
problemDimStream << ndofs << endl;
|
||||
problemDimStream.close();
|
||||
std::ofstream problemDimConstraintsStream;
|
||||
problemDimConstraintsStream.open("problemDimConstraints.dat", ios::out | ios::trunc);
|
||||
problemDimConstraintsStream << nconstraints << endl;
|
||||
problemDimConstraintsStream.close();
|
||||
|
||||
// set up a QP-problem
|
||||
// E(d) = 1 / 2 d^T K d + f^T d
|
||||
// g(d) = J d + g0
|
||||
// where K, J, f and g0 are evaluated at d0 (a valid configuration)
|
||||
|
||||
// to do: seems more appropriate to evaluate at a valid configuration...
|
||||
// that is one where the Dirichlet conditions hold... need to pull
|
||||
// this data from contactBlockTL...
|
||||
Vector d0(ndofs); d0 = 0.0;
|
||||
Array<int> DirichletDofs = contact->GetDirichletDofs();
|
||||
Array<double> DirichletVals = contact->GetDirichletVals();
|
||||
SparseMatrix *K;
|
||||
Vector f(ndofs); f = 0.0;
|
||||
contact->DdE(d0, f); K = contact->DddE(d0);
|
||||
for(int i = 0; i < DirichletDofs.Size(); i++)
|
||||
{
|
||||
d0(DirichletDofs[i]) = DirichletVals[i];
|
||||
}
|
||||
SparseMatrix *J;
|
||||
Vector g0(nconstraints); g0 = 0.0;
|
||||
J = contact->Ddg(d0); contact->g(d0, g0);
|
||||
Vector temp(nconstraints);
|
||||
J->Mult(d0, temp);
|
||||
g0.Add(-1.0, temp);
|
||||
|
||||
// check which rows of the Jacobian are zero!
|
||||
Vector ei(nconstraints); ei = 0.0;
|
||||
Vector JTei(ndofs); JTei = 0.0;
|
||||
|
||||
double normJTei;
|
||||
|
||||
int reduced_nconstraints = 0; // find actual number of constraints
|
||||
|
||||
|
||||
Array<int> nonZeroRows;
|
||||
for(int i = 0; i < nconstraints; i++)
|
||||
{
|
||||
ei(i) = 1.0;
|
||||
J->MultTranspose(ei, JTei);
|
||||
// nullify contributions from Dirichlet constrined dofs
|
||||
for(int j = 0; j < DirichletDofs.Size(); j++)
|
||||
{
|
||||
JTei(DirichletDofs[j]) = 0.0;
|
||||
}
|
||||
normJTei = sqrt(InnerProduct(JTei, JTei));
|
||||
if (normJTei > 1.e-12)
|
||||
{
|
||||
reduced_nconstraints += 1;
|
||||
nonZeroRows.Append(i);
|
||||
}
|
||||
ei(i) = 0.0;
|
||||
}
|
||||
cout << "number of linearized constraints = " << reduced_nconstraints << endl; // 9 constraints
|
||||
|
||||
// remove zero rows of the gap function Jacobian and corresponding gap function entries
|
||||
SparseMatrix * Jreduced = new SparseMatrix(reduced_nconstraints, ndofs);
|
||||
Vector g0reduced(reduced_nconstraints); g0reduced = 0.0;
|
||||
|
||||
|
||||
for(int i = 0; i < reduced_nconstraints; i++)
|
||||
{
|
||||
Array<int> col_tmp;
|
||||
Vector v_tmp; v_tmp = 0.0;
|
||||
J->GetRow(nonZeroRows[i], col_tmp, v_tmp);
|
||||
|
||||
/* obtain subset of columns of the given nonZero Jacobian row that are not Dirichlet constrained */
|
||||
bool freeDof;
|
||||
Array<int> loc_indicies;
|
||||
for(int j = 0; j < col_tmp.Size(); j++)
|
||||
{
|
||||
freeDof = true;
|
||||
for(int k = 0; k < DirichletDofs.Size(); k++)
|
||||
{
|
||||
if(col_tmp[j] == DirichletDofs[k])
|
||||
{
|
||||
freeDof = false;
|
||||
}
|
||||
}
|
||||
if(freeDof)
|
||||
{
|
||||
loc_indicies.Append(j);
|
||||
}
|
||||
}
|
||||
|
||||
Array<int> col_tmp_reduced(loc_indicies.Size());
|
||||
Vector v_tmp_reduced(loc_indicies.Size());
|
||||
for(int j = 0; j < loc_indicies.Size(); j++)
|
||||
{
|
||||
col_tmp_reduced[j] = col_tmp[loc_indicies[j]];
|
||||
v_tmp_reduced(j) = v_tmp(loc_indicies[j]);
|
||||
}
|
||||
|
||||
Jreduced->SetRow(i, col_tmp_reduced, v_tmp_reduced);
|
||||
g0reduced(i) = g0(nonZeroRows[i]);
|
||||
}
|
||||
|
||||
|
||||
QPContactProblem *QPContact = new QPContactProblem(*K, *Jreduced, f, g0reduced);
|
||||
|
||||
Mesh * mesh1 = new Mesh("meshes/block1.mesh", 1, 1);
|
||||
Mesh * mesh2 = new Mesh("meshes/rotatedblock2.mesh", 1, 1);
|
||||
for(int i = 0; i < ref_levels; i++)
|
||||
{
|
||||
mesh1->UniformRefinement();
|
||||
mesh2->UniformRefinement();
|
||||
}
|
||||
|
||||
int numMeshes = 2;
|
||||
Mesh *meshArray[numMeshes];
|
||||
meshArray[0] = mesh1;
|
||||
meshArray[1] = mesh2;
|
||||
Mesh mesh(meshArray, numMeshes);
|
||||
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
H1_FECollection fec(1, mesh.Dimension());
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec, mesh.Dimension(), Ordering::byVDIM);
|
||||
|
||||
InteriorPointSolver * QPContactOptimizer = new InteriorPointSolver(QPContact, &fespace);
|
||||
QPContactOptimizer->SetTol(1.e-6);
|
||||
QPContactOptimizer->SetLinearSolver(linSolver);
|
||||
QPContactOptimizer->SetMaxIter(50);
|
||||
Vector x0(ndofs); x0 = 0.0;
|
||||
for(int i = 0; i < DirichletDofs.Size(); i++)
|
||||
{
|
||||
x0(DirichletDofs[i]) = DirichletVals[i];
|
||||
}
|
||||
Vector xf(ndofs); xf = 0.0;
|
||||
QPContactOptimizer->Mult(x0, xf);
|
||||
|
||||
double Einitial = QPContact->E(x0);
|
||||
double Efinal = QPContact->E(xf);
|
||||
cout << "Energy objective at initial point = " << Einitial << endl;
|
||||
cout << "Energy objective at QP optimizer = " << Efinal << endl;
|
||||
QPContactOptimizer->GetCGIterNumbers().Print(mfem::out, 20);
|
||||
MFEM_VERIFY(QPContactOptimizer->GetConverged(), "Interior point solver did not converge.");
|
||||
|
||||
|
||||
//Mesh * mesh1 = new Mesh("meshes/block1.mesh", 1, 1);
|
||||
//Mesh * mesh2 = new Mesh("meshes/rotatedblock2.mesh", 1, 1);
|
||||
//for(int i = 0; i < ref_levels; i++)
|
||||
//{
|
||||
// mesh1->UniformRefinement();
|
||||
// mesh2->UniformRefinement();
|
||||
//}
|
||||
//int gdim = mesh1->Dimension();
|
||||
//FiniteElementCollection * fec = new H1_FECollection(1, gdim);
|
||||
//FiniteElementSpace * fespace1 = new FiniteElementSpace(mesh1, fec, gdim, Ordering::byVDIM);
|
||||
//FiniteElementSpace * fespace2 = new FiniteElementSpace(mesh2, fec, gdim, Ordering::byVDIM);
|
||||
//
|
||||
//GridFunction x1_gf(fespace1);
|
||||
//GridFunction x2_gf(fespace2);
|
||||
|
||||
//int ndof1 = fespace1->GetTrueVSize();
|
||||
//int ndof2 = fespace2->GetTrueVSize();
|
||||
//int ndof = ndof1 + ndof2;
|
||||
//for(int i = 0; i < ndof1; i++)
|
||||
//{
|
||||
// x1_gf(i) = xf(i);
|
||||
//}
|
||||
//for(int i = ndof1; i < ndof; i++)
|
||||
//{
|
||||
// x2_gf(i - ndof1) = xf(i);
|
||||
//}
|
||||
|
||||
//mesh1->SetNodalFESpace(fespace1);
|
||||
//mesh2->SetNodalFESpace(fespace2);
|
||||
//GridFunction *nodes1 = mesh1->GetNodes();
|
||||
//GridFunction *nodes2 = mesh2->GetNodes();
|
||||
|
||||
//{
|
||||
// *nodes1 += x1_gf;
|
||||
// *nodes2 += x2_gf;
|
||||
//}
|
||||
//
|
||||
|
||||
//ParaViewDataCollection paraview_dc1("QPContactBody1", mesh1);
|
||||
//paraview_dc1.SetPrefixPath("ParaView");
|
||||
//paraview_dc1.SetLevelsOfDetail(1);
|
||||
//paraview_dc1.SetDataFormat(VTKFormat::BINARY);
|
||||
//paraview_dc1.SetHighOrderOutput(true);
|
||||
//paraview_dc1.SetCycle(0);
|
||||
//paraview_dc1.SetTime(0.0);
|
||||
//paraview_dc1.RegisterField("Body1", &x1_gf);
|
||||
//paraview_dc1.Save();
|
||||
//
|
||||
//ParaViewDataCollection paraview_dc2("QPContactBody2", mesh2);
|
||||
//paraview_dc2.SetPrefixPath("ParaView");
|
||||
//paraview_dc2.SetLevelsOfDetail(1);
|
||||
//paraview_dc2.SetDataFormat(VTKFormat::BINARY);
|
||||
//paraview_dc2.SetHighOrderOutput(true);
|
||||
//paraview_dc2.SetCycle(0);
|
||||
//paraview_dc2.SetTime(0.0);
|
||||
//paraview_dc2.RegisterField("Body2", &x2_gf);
|
||||
//paraview_dc2.Save();
|
||||
|
||||
//delete fespace1;
|
||||
//delete fespace2;
|
||||
//delete fec;
|
||||
//delete mesh1;
|
||||
//delete mesh2;
|
||||
|
||||
delete QPContact;
|
||||
delete QPContactOptimizer;
|
||||
|
||||
delete K;
|
||||
delete J;
|
||||
delete Jreduced;
|
||||
delete contact;
|
||||
return 0;
|
||||
}
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user