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1194 changed files with 43222 additions and 188017 deletions
+8 -14
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@@ -31,7 +31,7 @@ install:
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
- cmake -H. -Bbuild
# -DCMAKE_BUILD_TYPE=Release
- cmake --build build --target metis -j 4
- cmake --build build
- set METIS_PATH=%cd%
- cd ..
@@ -40,7 +40,7 @@ install:
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild
- cmake --build build -j 4
- cmake --build build
- cmake --build build --target install
- cd ../..
@@ -49,20 +49,14 @@ install:
# MFEM
before_build:
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
build_script:
- cmake --build build_parallel --config Debug -j 4
# - cmake --build build_serial --config Release -j 4
# - cmake --build build_serial --target exec --config Release -j 4
- cmake --build build_shared_serial --config Release -j 4
- cmake --build build_shared_serial --target exec --config Release -j 4
- cmake --build build_parallel --config Release -j 4
- cmake --build build_serial --config Release -j 4
- cmake --build build_serial --target exec --config Release -j 4
after_build:
# - cd build_serial
# - ctest -C Release --output-on-failure
# - cd ..
- cd build_shared_serial
- cd build_serial
- ctest -C Release --output-on-failure
@@ -1,6 +1,7 @@
name: "Docker"
on:
# Always have a base image ready to go - this is a nightly build
schedule:
- cron: 0 3 * * *
@@ -25,6 +26,7 @@ jobs:
strategy:
fail-fast: false
matrix:
# Dockerfiles to build, a matrix supports future expanded builds
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
@@ -32,20 +34,15 @@ jobs:
runs-on: ubuntu-latest
name: Build
steps:
- name: Run Actions Cleaner
uses: easimon/maximize-build-space@v8
with:
overprovision-lvm: 'true'
remove-dotnet: 'true'
remove-android: 'true'
remove-haskell: 'true'
remove-codeql: 'true'
remove-docker-images: 'true'
- name: Checkout
uses: actions/checkout@v4
uses: actions/checkout@v3
# It's easier to reference named variables than indexes of the matrix
- name: Make Space For Build
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf /opt/ghc
# It's easier to reference named variables than indexes of the matrix
- name: Set Environment
env:
dockerfile: ${{ matrix.container[0] }}
@@ -65,7 +62,7 @@ jobs:
- name: GHCR Login
if: (github.event_name != 'pull_request')
uses: docker/login-action@v3
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ github.actor }}
+157 -204
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -33,7 +33,6 @@ env:
HYPRE_ARCHIVE: v2.19.0.tar.gz
HYPRE_TOP_DIR: hypre-2.19.0
METIS_ARCHIVE: metis-4.0.3.tar.gz
METIS_ARCHIVE_MAC: metis-4.0.3-mac.tgz
METIS_TOP_DIR: metis-4.0.3
MFEM_TOP_DIR: mfem
@@ -53,7 +52,6 @@ jobs:
mpi: [seq, par]
build-system: [make, cmake]
hypre-target: [int32]
precision: [fp64]
exclude:
- os: ubuntu-latest
build-system: cmake
@@ -67,250 +65,205 @@ jobs:
# - Add a new combination.
# 'build-system: cmake' and 'hypre-target: int64'
#
# Note: we will gather coverage info for any non-debug run except the
# note: we will gather coverage info for any non-debug run except the
# CMake build.
include:
- target: dbg
codecov: NO
- target: opt
codecov: YES
- os: ubuntu-latest
target: dbg
config-opts: 'CPPFLAGS+=-Og'
- os: macos-latest
codecov: NO
- os: windows-latest
codecov: NO
- os: windows-latest
target: opt
mpi: par
config-opts: '-DBUILD_SHARED_LIBS=ON'
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: cmake
hypre-target: int32
precision: fp64
# This option can be set to pass additional configuration options to
# the MFEM configuration command.
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: make
hypre-target: int64
precision: fp64
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: make
hypre-target: int32
precision: fp32
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
runs-on: ${{ matrix.os }}
steps:
# This external action allows to interrupt a workflow already running on
# the same branch to save resources.
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
# This external action allows to interrupt a workflow already running on
# the same branch to save resource
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
# Fix 'No space left on device' errors for Ubuntu builds.
- name: Run Actions Cleaner
if: matrix.os == 'ubuntu-latest'
uses: easimon/maximize-build-space@v8
with:
overprovision-lvm: 'true'
remove-android: 'true'
# Checkout MFEM in "mfem" subdirectory. Final path:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v3
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
fetch-depth: 0
# Checkout MFEM in "mfem" subdirectory. Final path:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v4
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
fetch-depth: 0
# Only get MPI if defined for the job.
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install mpich libmpich-dev
- name: Xcode version setup (MacOS)
if: matrix.os == 'macos-latest'
run: |
XCODE_PATH="/Applications/Xcode_15.3.app"
echo "> sudo xcode-select -s ${XCODE_PATH}"
sudo xcode-select -s ${XCODE_PATH}
echo "> g++ -v"
g++ -v
echo "> clang++ -v"
clang++ -v
- name: get lcov (Linux)
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install lcov
# Only get MPI if defined for the job.
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install mpich libmpich-dev
# Keep the following section in case we need it again in the future,
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
# - name: Set up Homebrew
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
# uses: Homebrew/actions/setup-homebrew@master
- name: get lcov (Linux)
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install lcov
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
# Keep the following section in case we need it again in the future,
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
# - name: Set up Homebrew
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
# uses: Homebrew/actions/setup-homebrew@master
- name: get lcov (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install lcov
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.1.2
- name: get lcov (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install lcov
# Get Hypre through cache, or build it.
# Install will only run on cache miss.
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v3
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.1.4
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: make
# Get Hypre through cache, or build it.
# Install will only run on cache miss.
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v4
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: cmake
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: make
precision: ${{ matrix.precision }}
# Get Metis through cache, or build it.
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v3
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: cmake
precision: ${{ matrix.precision }}
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# Get Metis through cache, or build it.
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v4
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v3
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
dir: ${{ env.METIS_TOP_DIR }}
- name: prepare vcpkg binary cache location (Windows)
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
run: |
mkdir -p vcpkg_cache
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v4
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
- name: install metis (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
- name: prepare vcpkg binary cache location (Windows)
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
run: |
mkdir -p vcpkg_cache
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.2
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
os: ${{ matrix.os }}
target: ${{ matrix.target }}
codecov: ${{ matrix.codecov }}
mpi: ${{ matrix.mpi }}
build-system: ${{ matrix.build-system }}
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
library-only: ${{ matrix.target == 'dbg' }}
- name: install metis (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
# Run checks (and only checks) on debug targets
- name: checks
if: matrix.build-system == 'make' && matrix.target == 'dbg'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make check
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.5
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
os: ${{ matrix.os }}
target: ${{ matrix.target }}
codecov: ${{ matrix.codecov }}
mpi: ${{ matrix.mpi }}
build-system: ${{ matrix.build-system }}
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
precision: ${{ matrix.precision }}
config-options: ${{ matrix.config-opts }}
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
# Note: 'tests' include the unit tests
- name: tests
if: matrix.build-system == 'make' && matrix.target == 'opt'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
# Run checks (and only checks) on debug targets
- name: checks
if: matrix.build-system == 'make' && matrix.target == 'dbg'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make check
- name: cmake checks
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
run: |
CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
shell: bash
# Note: 'tests' include the unit tests
- name: tests
if: matrix.build-system == 'make' && (matrix.target == 'opt' || matrix.os == 'ubuntu-latest')
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
- name: cmake unit tests (Ubuntu)
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake checks
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
run: |
CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
shell: bash
- name: cmake tests
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake unit tests (Ubuntu)
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake tests
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && \
ctest --output-on-failure -C ${CTEST_CONFIG} || \
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
shell: bash
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.5
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.2
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
+28 -27
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@@ -13,10 +13,10 @@ name: "Static Analysis"
on:
push:
branches: ["master", "next"]
branches: [ "master", "next"]
pull_request:
# The branches below must be a subset of the branches above
branches: ["master"]
branches: [ "master" ]
jobs:
analyze:
@@ -35,35 +35,36 @@ jobs:
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Checkout repository
uses: actions/checkout@v3
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
# If the Autobuild fails above, remove it and uncomment the following three lines.
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
# - run: |
# echo "Run, Build Application using script"
# ./location_of_script_within_repo/buildscript.sh
# If the Autobuild fails above, remove it and uncomment the following three lines.
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
# - run: |
# echo "Run, Build Application using script"
# ./location_of_script_within_repo/buildscript.sh
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
+56 -56
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -34,67 +34,67 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
- name: checkout MFEM
uses: actions/checkout@v4
with:
path: mfem
- name: checkout MFEM
uses: actions/checkout@v3
with:
path: mfem
- name: Get MPI (Linux)
run: |
sudo apt-get install mpich libmpich-dev
- name: Get MPI (Linux)
run: |
sudo apt-get install mpich libmpich-dev
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v4
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.5
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v3
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v4
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v3
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.5
with:
os: ${{ runner.os }}
target: opt
codecov: NO
mpi: par
build-system: make
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: mfem
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.2
with:
os: ${{ runner.os }}
target: opt
codecov: NO
mpi: par
build-system: make
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: mfem
- name: test (no clean)
run: |
cd mfem && make test-noclean
- name: test (no clean)
run: |
cd mfem && make test-noclean
- name: gitignore
run: |
cd mfem/tests/scripts
./runtest gitignore
- name: gitignore
run: |
cd mfem/tests/scripts
./runtest gitignore
-76
View File
@@ -1,76 +0,0 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Sanitizer"
permissions:
actions: write
on:
push:
branches:
- master
- next
pull_request:
workflow_dispatch:
jobs:
Serial:
runs-on: ubuntu-latest
steps:
- name: Temporary workaround for sanitizer crashes
# See https://github.com/actions/runner-images/issues/9491
# The issue should be fixed in the next runner image for Ubuntu 22.04,
# see https://github.com/actions/runner-images/pull/9513
run: sudo sysctl vm.mmap_rnd_bits=28
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
- name: MFEM Checkout
uses: actions/checkout@v4
with:
path: mfem
- name: MFEM Build
uses: mfem/github-actions/build-mfem@v2.5
with:
os: ${{ runner.os }}
target: opt
mpi: seq
hypre-dir: unused-hypre-dir
metis-dir: unused-metis-dir
mfem-dir: mfem
build-system: make
library-only: false
config-options:
CXX="clang++-14"
CXXFLAGS="-g -O1 -std=c++11
-fsanitize=address
-fno-omit-frame-pointer
-fsanitize-address-use-after-scope"
- name: MFEM Info
working-directory: mfem
run: make info
- name: MFEM Sanitize
working-directory: mfem
run:
ASAN_OPTIONS="detect_leaks=1,
strict_init_order=1,
strict_string_checks=1,
check_initialization_order=1,
detect_stack_use_after_return=1"
make test
+71 -81
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -33,59 +33,49 @@ jobs:
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ github.token }}
- name: checkout mfem
uses: actions/checkout@v4
- name: checkout mfem
uses: actions/checkout@v3
- name: copyright check
id: copyright
run: |
./config/githooks/pre-push --copyright
- name: copyright check
id: copyright
run: |
./config/githooks/pre-push --copyright
continue-on-error: true
continue-on-error: true
- name: license check
id: license
run: |
./config/githooks/pre-push --license
continue-on-error: true
- name: license check
id: license
run: |
./config/githooks/pre-push --license
continue-on-error: true
- name: release check
id: release
run: |
./config/githooks/pre-push --release
continue-on-error: true
- name: release check
id: release
run: |
./config/githooks/pre-push --release
continue-on-error: true
- name: math check
id: math
run: |
./config/githooks/pre-push --math
continue-on-error: true
- name: wrap-up
if: |
steps.copyright.outcome != 'success' ||
steps.license.outcome != 'success' ||
steps.release.outcome != 'success' ||
steps.math.outcome != 'success'
run: |
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
echo "copyright check failed, unroll log for details"
fi
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
echo "license check failed, unroll log for details"
fi
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
echo "release check failed, unroll log for details"
fi
if [[ "${{ steps.math.outcome }}" != "success" ]]; then
echo "math check failed, unroll log for details"
fi
exit 1
- name: wrap-up
if: |
steps.copyright.outcome != 'success' ||
steps.license.outcome != 'success' ||
steps.release.outcome != 'success'
run: |
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
echo "copyright check failed, unroll log for details"
fi
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
echo "license check failed, unroll log for details"
fi
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
echo "release check failed, unroll log for details"
fi
exit 1
code-style:
runs-on: ubuntu-latest
@@ -93,16 +83,16 @@ jobs:
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
- name: checkout mfem
uses: actions/checkout@v3
- name: get astyle
run: |
sudo apt-get install astyle
- name: get astyle
run: |
sudo apt-get install astyle
- name: style check
run: |
./config/githooks/pre-push --style
- name: style check
run: |
./config/githooks/pre-push --style
documentation:
runs-on: ubuntu-latest
@@ -110,22 +100,22 @@ jobs:
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
- name: checkout mfem
uses: actions/checkout@v3
- name: get doxygen and graphviz
run: |
sudo apt-get install doxygen graphviz
- name: get doxygen and graphviz
run: |
sudo apt-get install doxygen graphviz
- name: update doxygen config file
run: |
cd doc
doxygen -u CodeDocumentation.conf.in
- name: update doxygen config file
run: |
cd doc
doxygen -u CodeDocumentation.conf.in
- name: build documentation
run: |
cd tests/scripts
./runtest documentation
- name: build documentation
run: |
cd tests/scripts
./runtest documentation
branch-history:
if: |
@@ -135,16 +125,16 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-latest
steps:
- name: checkout mfem
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: checkout mfem
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: branch-history
run: |
# We override origin to make sure we point to the main repo.
# This is to have consistent test results on PRs from forks.
git remote remove origin
git remote add origin https://github.com/mfem/mfem.git
git checkout -b gh-actions-branch-history
./config/githooks/pre-push --history
- name: branch-history
run: |
# We override origin to make sure we point to the main repo.
# This is to have consistent test results on PRs from forks.
git remote remove origin
git remote add origin https://github.com/mfem/mfem.git
git checkout -b gh-actions-branch-history
./config/githooks/pre-push --history
+13 -77
View File
@@ -21,15 +21,11 @@ CMakeFiles/
# Default install location
/mfem/
# Typical build directory
/build/
# Generated files in main directory, config/ and docs/
/deps.mk
config/_config.hpp
config/config.mk
config/sample-runs-build.log
config/user.cmake
config/user.mk
doc/CodeDocumentation.conf
doc/CodeDocumentation.html
@@ -57,8 +53,6 @@ examples/ex2[0-9]
examples/ex2[0-9]p
examples/ex3[0-9]
examples/ex3[0-9]p
examples/ex4[0-9]
examples/ex4[0-9]p
examples/refined.mesh
examples/displaced.mesh
@@ -93,6 +87,10 @@ examples/ex16.mesh
examples/ex16-mesh.*
examples/ex16-init.*
examples/ex16-final.*
examples/vortex-mesh.*
examples/vortex.mesh
examples/vortex-?-init.*
examples/vortex-?-final.*
examples/deformation.*
examples/pressure.*
examples/ex20.dat
@@ -111,14 +109,6 @@ examples/ex25p-*.*
examples/ex28_*
examples/ex28p_*
examples/flux.*
examples/dsol.*
examples/cond.*
examples/cond_j.*
examples/cond_mesh.*
examples/port_mesh.*
examples/port_mode.*
examples/euler-*
examples/amgx/ex1
examples/amgx/ex1p
@@ -128,16 +118,11 @@ examples/amgx/sol.gf
examples/amgx/mesh.*
examples/amgx/sol.*
examples/caliper/ex1
examples/caliper/ex1p
examples/caliper/refined.mesh
examples/caliper/sol.gf
examples/caliper/mesh.*
examples/caliper/sol.*
examples/ginkgo/ex1
examples/ginkgo/refined.mesh
examples/ginkgo/sol.gf
examples/gingko/ex1
examples/gingko/refined.mesh
examples/gingko/sol.gf
examples/gingko/mesh.*
examples/gingko/sol.*
examples/hiop/ex9
examples/hiop/ex9p
@@ -163,8 +148,8 @@ examples/petsc/velocity.*
examples/petsc/elastic_energy.*
examples/petsc/mode_*
examples/pumi/ex[12]
examples/pumi/ex[16]p
examples/pumi/ex1
examples/pumi/ex[126]p
examples/pumi/refined.mesh
examples/pumi/sol.gf
examples/pumi/mesh.*
@@ -209,9 +194,6 @@ miniapps/gslib/field-diff
miniapps/gslib/field-interp
miniapps/gslib/findpts
miniapps/gslib/pfindpts
miniapps/gslib/schwarz_ex1
miniapps/gslib/schwarz_ex1p
miniapps/gslib/interpolated.gf
miniapps/meshing/mobius-strip
miniapps/meshing/klein-bottle
@@ -220,28 +202,21 @@ miniapps/meshing/twist
miniapps/meshing/mesh-explorer
miniapps/meshing/shaper
miniapps/meshing/extruder
miniapps/meshing/fit-node-position
miniapps/meshing/trimmer
miniapps/meshing/reflector
miniapps/meshing/mesh-optimizer
miniapps/meshing/pmesh-optimizer
miniapps/meshing/pmesh-fitting
miniapps/meshing/minimal-surface
miniapps/meshing/pminimal-surface
miniapps/meshing/polar-nc
miniapps/meshing/mesh-quality
miniapps/meshing/mobius-strip.mesh
miniapps/meshing/klein-bottle.mesh
miniapps/meshing/toroid-*.mesh
miniapps/meshing/twist-*.mesh
miniapps/meshing/mesh-explorer.mesh*
miniapps/meshing/mesh-explorer.mesh
miniapps/meshing/partitioning.txt
miniapps/meshing/mesh-explorer-visit*
miniapps/meshing/mesh-explorer-paraview/
miniapps/meshing/shaper.mesh
miniapps/meshing/extruder.mesh
miniapps/meshing/trimmer.mesh
miniapps/meshing/reflected.mesh
miniapps/meshing/optimized*
miniapps/meshing/perturbed*
miniapps/meshing/polar-nc.mesh
@@ -266,27 +241,17 @@ miniapps/navier/navier_tgv
miniapps/navier/navier_shear
miniapps/navier/navier_3dfoc
miniapps/navier/navier_turbchan
miniapps/navier/navier_cht
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_printfunc
miniapps/nurbs/nurbs_patch_ex1
miniapps/nurbs/nurbs_curveint
miniapps/nurbs/refined.mesh
miniapps/nurbs/mesh.*
miniapps/nurbs/sol.*
miniapps/nurbs/mode_*
miniapps/nurbs/Example1*
miniapps/nurbs/sin-fit.mesh
miniapps/nurbs/CurveInt
miniapps/nurbs/nurbs_naca_cmesh
miniapps/nurbs/naca-cmesh.mesh
miniapps/nurbs/glvis_naca-cmesh.mesh
miniapps/nurbs/Naca_cmesh
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -309,14 +274,8 @@ miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
miniapps/tools/get-values
miniapps/tools/tmop-check-metric
miniapps/tools/tmop-metric-magnitude
miniapps/tools/nodal-transfer
miniapps/tools/ParaView
miniapps/tools/gridfunc_*
miniapps/tools/mesh_*
miniapps/tools/check-tmop-metric
miniapps/toys/automata
miniapps/toys/life
@@ -342,37 +301,16 @@ miniapps/toys/mondrian.mesh
miniapps/solvers/block-solvers
miniapps/solvers/lor_solvers
miniapps/solvers/plor_solvers
miniapps/solvers/lor_elast
miniapps/solvers/ParaView
miniapps/solvers/mesh.*
miniapps/solvers/sol.*
miniapps/hdiv-linear-solver/darcy
miniapps/hdiv-linear-solver/grad_div
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/multidomain/multidomain
miniapps/multidomain/multidomain_nd
miniapps/multidomain/multidomain_rt
miniapps/hooke/hooke
miniapps/dpg/diffusion
miniapps/dpg/pdiffusion
miniapps/dpg/convection-diffusion
miniapps/dpg/pconvection-diffusion
miniapps/dpg/acoustics
miniapps/dpg/pacoustics
miniapps/dpg/maxwell
miniapps/dpg/pmaxwell
miniapps/dpg/ParaView
miniapps/spde/generate_random_field
miniapps/spde/ParaView
miniapps/tribol/contact-patch-test
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
@@ -385,8 +323,6 @@ tests/unit/tmop_pa_tests_*
tests/unit/ptmop_pa_tests_*
tests/unit/ceed_tests
tests/unit/debug_device_tests
tests/unit/parallel_in_serial.mesh
tests/unit/parallel_in_serial.gf
# Benchmark binaries
tests/benchmarks/bench_ceed
+1 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -13,9 +13,6 @@
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
# LLNL-specific!
include:
- project: 'lc-templates/id_tokens'
file: 'id_tokens.yml'
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
# the preceding stages to complete before to start. However, we sometimes use
+1 -5
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -9,10 +9,6 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
include:
- project: 'lc-templates/id_tokens'
file: 'id_tokens.yml'
# We define the following GitLab pipeline variables:
variables:
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+5 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,8 +35,9 @@ variables:
- when: on_success
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
# pre-allocation the same way slurm does. We use the pci queue on lassen
# to speed-up the allocation.
# pre-allocation the same way slurm does. We use pdebug queue on lassen
# to speed-up the allocation. However this would not be scalable to
# multiple builds.
.build_and_test_on_lassen:
extends: [.on_lassen]
stage: build_and_test
@@ -44,5 +45,5 @@ variables:
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
- lalloc 1 -W 45 -q pci --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
- lalloc 1 -W 45 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
needs: [setup]
+2 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -52,4 +52,4 @@ variables:
- echo ${JOBID}
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+11 -7
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,10 +22,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -55,10 +57,12 @@
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+6 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -47,10 +47,12 @@ setup_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+12 -8
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,11 +35,13 @@ setup:
(
date
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
# try every 5 seconds; we may want to add a counter for the number of
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/mfem-data.lock'"
date
@@ -67,10 +69,12 @@ setup:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+5 -5
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,14 +14,14 @@ stages:
- build_and_test
- report
opt_mpi_cuda_gcc:
opt_mpi_cuda_xl_16_1_1_8:
variables:
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
extends: .build_and_test_on_lassen
opt_mpi_cuda_hypre_cuda_gcc:
opt_mpi_cuda_hypre_cuda_xl:
variables:
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
extends: .build_and_test_on_lassen
# Jobs report
+11 -13
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -51,8 +51,6 @@ cleanup:
script:
- echo "BUILD_ROOT=${BUILD_ROOT}"
- rm -rf "${BUILD_ROOT}" || true
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
- make -C "${CI_PROJECT_DIR}" distclean
report_baseline:
extends: [.on_quartz]
@@ -68,10 +66,12 @@ report_baseline:
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
@@ -82,20 +82,18 @@ report_baseline:
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
fi
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
>> ${rundir}/pipeline.txt
# We create an autotest-email.html file, because that's how we signal
# that there was an error / diff (temporary).
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
[[ -f ${rundir}/${BASELINE_TEST}-${MACHINE_NAME}.diff ]]; then
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
fi
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
+21 -16
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -23,43 +23,48 @@ allocate_resource:
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=pdebug --time=45 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
# GitLab jobs for the Quartz machine at LLNL
debug_ser_gcc_10:
debug_ser_gcc_4_9_3:
variables:
SPEC: "%gcc@10.3.1 +debug~mpi"
SPEC: "%gcc@4.9.3 +debug~mpi"
extends: .build_and_test_on_quartz
debug_par_gcc_10:
debug_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +debug+mpi"
SPEC: "%gcc@6.1.0 +debug~mpi"
extends: .build_and_test_on_quartz
opt_ser_gcc_10:
debug_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 ~mpi"
SPEC: "%gcc@6.1.0 +debug+mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10:
opt_ser_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1"
SPEC: "%gcc@6.1.0 ~mpi"
extends: .build_and_test_on_quartz
opt_par_gcc_10_sundials:
opt_par_gcc_6_1_0:
variables:
SPEC: "%gcc@10.3.1 +sundials"
SPEC: "%gcc@6.1.0"
extends: .build_and_test_on_quartz
opt_par_gcc_10_petsc:
opt_par_gcc_6_1_0_sundials:
variables:
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
SPEC: "%gcc@6.1.0 +sundials"
extends: .build_and_test_on_quartz
opt_par_gcc_10_pumi:
opt_par_gcc_6_1_0_petsc:
variables:
SPEC: "%gcc@10.3.1 +pumi"
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
extends: .build_and_test_on_quartz
opt_par_gcc_6_1_0_pumi:
variables:
SPEC: "%gcc@6.1.0 +pumi"
extends: .build_and_test_on_quartz
# Release
+31 -21
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,9 +14,6 @@
# locals
glob_err=${BASELINE_TEST}.err
base=${BASELINE_TEST}-${SYS_TYPE}
if [[ "${MACHINE_NAME}" == "quartz" ]]; then
base="${BASELINE_TEST}-${MACHINE_NAME}"
fi
base_diff=${base}.diff
base_patch=${base}.patch
base_out=${base}.out
@@ -32,11 +29,11 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
# run
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
salloc --nodes=1 --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
salloc --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "corona" ]]; then
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
lalloc 1 -q pci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
else
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
exit 1
@@ -45,34 +42,47 @@ fi
# post
mkdir ${artifacts_path}
status=0
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
if [[ -s ${glob_err} ]]; then
echo "ERROR during ${BASELINE_TEST} execution"
echo "Here is the ${glob_err} file content"
if [[ -s ${glob_err} ]]
then
echo "ERROR during ${BASELINE_TEST} execution";
echo "Here is the ${glob_err} file content";
cat ${glob_err}
cp ${glob_err} ${artifacts_path}/${glob_err}
status=1
fi
if [[ -f ${base_patch} ]]; then
exit 1;
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
then
echo "Something went WRONG in ${BASELINE_TEST}:";
echo "Either ${base_patch} or ${base_out} should exists";
exit 1;
elif [[ -f ${base_patch} ]]
then
echo "${BASELINE_TEST}: Differences found, patch generated"
cp ${base_patch} ${artifacts_path}/${base_patch}
elif [[ -f ${base_out} ]]; then
elif [[ -f ${base_out} ]]
then
echo "${BASELINE_TEST}: Differences found, replacement file generated"
cp ${base_out} ${artifacts_path}/${base_out}
fi
if [[ -f ${BASELINE_TEST}.out ]]; then
cp ${BASELINE_TEST}.out ${artifacts_path}
fi
# base_diff won't even exist if there is no difference.
if [[ -f ${base_diff} ]]; then
if [[ -f ${base_diff} ]]
then
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
cat ${base_diff}
cp ${base_diff} ${artifacts_path}/${base_diff}
status=1
# We create a .err file, because that's how we signal that there was a diff.
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
fi
if [[ $status -eq 0 ]]; then
if [[ ! -s ${base_diff} ]]
then
echo "${BASELINE_TEST}: PASSED"
true
else
echo "${BASELINE_TEST}: FAILED"
false
fi
exit $status
-41
View File
@@ -1,41 +0,0 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Try to push to the remote 5 times. If the push fails, and the local and remote
# have diverged, then pull from the remote to merge changes, and try pushing
# again. If some other failure happens
for i in {1..5}; do
git push origin master && exit 0
# Wait for 20 seconds in case someone else is pushing to the remote
# concurrently
sleep 20
# Fetch any updates from the remote
git remote update
# Get the latest commit on the local branch
LOCAL=$(git rev-parse @)
# Get the latest commit on the remote
REMOTE=$(git rev-parse @{u})
# Get the common ancestor
BASE=$(git merge-base @ @{u})
# Have the local and remote diverged?
if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
git pull
if [[ $? == 0 ]]; then
continue
else
exit 1 # Something else went wrong trying to pull
fi
fi
done
exit 1 # Did not succeed in 5 attempts
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -32,7 +32,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -29,7 +29,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+22 -269
View File
@@ -8,282 +8,43 @@
https://mfem.org
Version 4.7.1 (development)
Version 4.5.1 (development)
===========================
- Added an MFEM example for the eikonal equation. This new solver is based on
the proximal Galerkin method introduced by Keith and Surowiec.
Version 4.7, released on May 7, 2024
====================================
- Added support for single precision (with corresponding hypre build). The MFEM
floating point type was generalized from `double` to `real_t`. For details see
https://github.com/orgs/mfem/discussions/4207.
Meshing improvements
--------------------
- Added the capability to partition (big) serial meshes in serial code, see the
new classes MeshPartitioner and MeshPart. This capability is also exposed as a
menu option in the mesh-explorer miniapp in miniapps/meshing.
- Added named attribute sets and basic supporting methods to the Mesh class as a
convenient means of referring to sets of domain or boundary attribute numbers.
See the new Example 39/39p and data/compass.mesh.
- Introduced formulas for refinement of patches in NURBS meshes. Refinement by
arbitrary integer factors is also enabled, e.g. in the mesh-explorer miniapp.
NURBS coarsening and knot removal are also introduced.
- Added support for internal boundary elements in nonconforming meshes.
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
Discretization improvements
---------------------------
- Added a new nonlinear integrator, `HyperbolicFormIntegrator` that implements
both element-wise weak divergence and face-wise numerical flux for a general
system of hyperbolic conservation laws. To use the integrator for a specific
flux function, users can define a derived class of `FluxFunction`. Currently,
advection, Burgers, shallow-water and Euler equations (see Example 18/18p) are
available.
- Added a capability to construct cut-surface and cut-volume IntegrationRules
through a moment-fitting approach. The cut is specified by the zero level set
of a Coefficient. See fem/intrules_cut.hpp and the new Example 38.
- Introduced support for high-order nonconforming Nedelec elements on simplices.
GPU computing
-------------
- Added partial assembly and GPU support for the DG diffusion integrator.
- Efficient GPU-accelerated LOR assembly is now supported on surface meshes.
- Added functionality to automatically configure hypre's compute policy to match
MFEM's compute policy when hypre is built with GPU support. Requires version
hypre-2.31.0 or later.
- Added support for full assembly on simplices.
- Added partial assembly for linear elasticity (no sum factorization for now).
- Added functionality for BilinearFormIntegrators to use kernels that work for
both tensor and unstructured elements.
- The RAJA backend will use `seq_exec` for serial loop execution when RAJA
v2023.06.00 and beyond is detected as `loop_exec` is deprecated.
- API change: The macro MFEM_HYPRE_FORALL (from hypre.hpp) which was intended
for internal use, has been removed and replaced by the function template
mfem::hypre_forall in general/forall.hpp.
New and updated examples and miniapps
-------------------------------------
- Added a new miniapp illustrating elastic contact based on the Tribol library,
(https://github.com/LLNL/Tribol). See miniapps/tribol.
- Added a miniapp to demonstrate low order refined (LOR) block preconditioning
for linear elasticity on GPUs. See miniapps/solvers/lor_elast.
- Added a new block solver in miniapp/solvers for the Darcy problem. The new
solver is based on a Bramble-Pasciak preconditioning. User can use and
implement their own preconditioner for the mass matrix.
- Added a small miniapp for printing the shape functions of a KnotVector. See
miniapps/nurbs/nurbs_printfunc.cpp.
- Added two new example codes: 38 and 39/39p described above. Substantially
updated Example 18/18p.
Miscellaneous
-------------
- Updated the Doxygen documentation style, which now requires Doxygen version
1.9.8 or later. See the doc/ directory.
- Improved thread safety for global variables in the library, e.g. for IntRules,
RefinedIntRules, GlobGeometryRefiner, and FiniteElement::dof2quad_array.
- PETSc integration now generally requires PETSc version 3.21 or later, though
depending on the functionality older versions may still work.
- Various other simplifications, extensions, and bugfixes in the code.
- Added GSLIB-based gather-scatter operator.
Version 4.6, released on September 27, 2023
===========================================
- MFEM is now available in Homebrew and can be installed on a Mac with just
"brew install mfem". See https://formulae.brew.sh/formula/mfem.
Meshing improvements
--------------------
- Added asymptotically-balanced TMOP compound metrics 90, 94, 328, 338. A new
tool, tmop-metric-magnitude, can be used to track how metrics change under
geometric perturbations. See miniapps/tools.
- Several NURBS meshing improvements:
* Support for free connectivity of NURBS patches allowing for more complex
patch configurations such as C-meshes.
* New methods to set and get attributes on NURBS patches and patch boundaries.
* The edge to knot map for NURBS meshes can be determined automatically. It is
no longer needed to specify this in the NURBS mesh.
* Added curve interpolation method for NURBS.
* See miniapps/nurbs for example meshes and miniapps.
Discretization improvements
---------------------------
- SubMesh and ParSubMesh have been extended to support the transfer of
Nedelec and Raviart-Thomas finite element spaces.
- Added support for partial assembly on NURBS patches, and NURBS-patch sparse
matrix assembly. Patch matrix assembly includes the option to use reduced
approximate integration rules, computed by the newly implemented non-negative
least-squares (NNLS) solver.
- Support for parallel transfer of H1 fields using the low-order refined (LOR)
transfer operators in L2ProjectionGridTransfer
- Added KDTree class for 2D/3D set of points, which is then utilized in the new
KDTreeNodalProjection class to project a function defined on an arbitrary set
of points onto an MFEM grid function. This functionality is demonstrated in
the nodal-transfer miniapp. The current implementation is serial only. Further
extensions can include search in arbitrary dimensional spaces.
- Added support for p-refined meshes in GSLIB-FindPoints.
- Device kernels can now access device-specific DOF and quadrature limits using
the DofQuadLimits structure, allowing increased limits when executing on CPU.
The limits for the runtime selected device can be accessed in host code using
DeviceDofQuadLimits::Get(). The global constants MAX_D1D and MAX_Q1D are no
longer available.
- Face restriction operators for Nedelec and Raviart-Thomas finite element
spaces are now supported through the ConformingFaceRestriction class.
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
Linear and nonlinear solvers
----------------------------
- Updated the MUMPS interface to support multiple right-hand sides, block
low-rank compression, builds using 64-bit integers, and other improvements.
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
The interface provides a serial (OpenMP shared memory) version of Pardiso for
use with SparseMatrix. This complements the existing parallel (MPI distributed
memory) version already available through the CPardiso MFEM integration.
- Added HIP support to the PETSc and SUNDIALS interfaces.
New and updated examples and miniapps
-------------------------------------
- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
saddle-point solver methodology, suitable for high-order discretizations and
for GPU acceleration. Examples illustrating the solution of Darcy and grad-div
problems are included. See miniapps/hdiv-linear-solver.
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
and parallel examples for diffusion, convection-diffusion, acoustics and
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
integrators are added in support of DPG systems: TraceIntegrator,
NormalTraceIntegrator and TangentTraceIntegrator. See miniapps/dpg.
- Added a new miniapp that implements the SPDE method for generating Gaussian
random fields of Matern covariance. The resulting random field can be used,
e.g., to model material uncertainties. See miniapps/spde.
- Added a new parallel LOR transfer miniapp, plor-transfer, which mirrors the
functionality of the serial LOR transfer miniapp. See miniapps/tools.
- New serial miniapp, nodal-transfer, demonstrating the use of KDTree to map a
parallel grid function to a different parallel partitioning of the same mesh.
- Added 3 additional TMOP miniapps in miniapps/meshing:
* Mesh-Quality evaluates quality using size, skewness, and aspect-ratio
computed from the Jacobian of the transformation.
* Mesh-Fitting can be used for interface and boundary fitting to implicit
domains defined using level-set functions.
* Fit-Node-Position fits selected mesh nodes to specified positions, while
maintaining overall mesh quality.
- Added 4 new example codes:
* Example 34/34p solves a simple magnetostatic problem where source terms and
boundary conditions are transferred with SubMesh objects.
* Example 35p implements H1, H(curl) and H(div) variants of a damped harmonic
oscillator with field transfer using SubMesh objects.
* Example 36/36p demonstrates the solution of the obstacle problem with a new
finite element method (proximal Galerkin).
* Example 37/37p demonstrates topology optimization with MFEM.
- Added a random refinement option to the mesh-explorer miniapp to assist users
in experimenting with nonconforming meshes.
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
Miscellaneous
-------------
- Improved lambda body debugging with the addition of mfem::forall functions.
These functions can take the place of the MFEM_FORALL macros, which have been
preserved for backwards compatibility.
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
in the fem/integ/ subdirectory.
- FiniteElementSpace::GetFE has been updated to abort instead of returning NULL for
an empty partition.
- Various other simplifications, extensions, and bugfixes in the code.
Version 4.5.2, released on March 23, 2023
=========================================
- Added support for pyramids in non-conforming meshes. Currently only isotropic
refinement is supported in this case.
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
Discretization improvements
---------------------------
- TBD
Linear and nonlinear solvers
----------------------------
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
New and updated examples and miniapps
-------------------------------------
- TBD
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
domain boundary.
Integrations, testing and documentation
---------------------------------------
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- Added an option to auto-balance compound TMOP metrics.
- Fixed a bug in TMOP metric 301.
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
face-neighbor elements.
- Added support for pyramids in Gmsh meshes.
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection. See option 'D' in the menu.
- VisItDataCollection now correctly handles data collection names containing
Miscellaneous
-------------
- VisItDataCollection now correctly handles collection names containing
underscores.
- Added support for shared Windows builds with MSVC through CMake.
Developers note: this enhancement is facilitated by the addition of the macro
MFEM_EXPORT, see config.hpp for more details on its usage.
- The following integrations have updated minimum version requirements:
* RAJA >= 2022.10.3
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with
VisItDataCollection::SetPadDigitsRank().
API changes
-----------
@@ -291,14 +52,6 @@ API changes
have been deprecated and generate deprecation warnings if used. They will be
removed in a future release.
- The methods Mesh::GetFaceBaseGeometry and Mesh::GetFaceGeometryType have been
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
should be used instead.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with SetPadDigitsRank().
Version 4.5, released on October 22, 2022
=========================================
+33 -124
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -13,24 +13,19 @@
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
# Version 3.8 or newer is required for direct CUDA support.
cmake_minimum_required(VERSION 3.8)
message(STATUS "CMake version: ${CMAKE_VERSION}")
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
"Path to optional user configuration file.")
# Require C++11 and disable compiler-specific extensions
set(CMAKE_CXX_STANDARD 11 CACHE STRING "C++ standard to use.")
set(CMAKE_CXX_STANDARD_REQUIRED ON CACHE BOOL
"Force the use of the chosen C++ standard.")
set(CMAKE_CXX_EXTENSIONS OFF CACHE BOOL "Enable C++ standard extensions.")
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
# Load user settings before the defaults - this way the defaults will not
# overwrite the user set options. If the user has not set all options, we still
# have the defaults.
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
if (USER_CONFIG_LOADED)
set(USER_CONFIG_LOADED "LOADED")
endif()
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
include("${USER_CONFIG}" OPTIONAL)
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
@@ -58,7 +53,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.7.1)
set(${PROJECT_NAME}_VERSION 4.5.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -83,19 +78,14 @@ if (MFEM_USE_CONDUIT OR
# * find_package(PETSc REQUIRED)
set(XSDK_ENABLE_C ON)
endif()
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
if (MFEM_USE_STRUMPACK)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
# SUNDIALS, STRUMPACK, Ginkgo, Tribol, RAJA and Umpire require C++14:
if ((MFEM_USE_SUNDIALS OR
MFEM_USE_STRUMPACK OR
MFEM_USE_GINKGO OR
MFEM_USE_TRIBOL OR
MFEM_USE_RAJA OR
MFEM_USE_UMPIRE) AND
# SUNDIALS, STRUMPACK, and Ginkgo require C++14:
if ((MFEM_USE_SUNDIALS OR MFEM_USE_STRUMPACK OR MFEM_USE_GINKGO) AND
("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14 CACHE STRING "C++ standard to use." FORCE)
set(CMAKE_CXX_STANDARD 14)
endif()
# Include xSDK default CMake file.
@@ -106,8 +96,7 @@ enable_language(CXX)
if (MINGW)
# MinGW GCC does not expose the functions jn/_jn, yn/_yn (used in Example
# 25/25p) unless we use '-std=gnu++11':
set(CMAKE_CXX_EXTENSIONS ON
CACHE BOOL "Enable C++ standard extensions." FORCE)
set(CMAKE_CXX_EXTENSIONS ON)
endif()
if (MFEM_USE_CUDA)
if (MFEM_USE_HIP)
@@ -118,11 +107,12 @@ if (MFEM_USE_CUDA)
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
endif()
enable_language(CUDA)
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
"CUDA standard to use.")
set(CMAKE_CUDA_STANDARD_REQUIRED ON CACHE BOOL
"Force the use of the chosen CUDA standard.")
set(CMAKE_CUDA_EXTENSIONS OFF CACHE BOOL "Enable CUDA standard extensions.")
set(CMAKE_CUDA_STANDARD 11)
if (MFEM_USE_GINKGO)
set(CMAKE_CUDA_STANDARD 14)
endif()
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CUDA_FLAGS "--expt-extended-lambda")
if (CMAKE_VERSION VERSION_LESS 3.18.0)
set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
@@ -143,10 +133,12 @@ if (MFEM_USE_CUDA)
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
endif()
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS}")
find_package(CUDAToolkit REQUIRED)
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
"CUDA flags set for MFEM" FORCE)
set(CUSPARSE_FOUND TRUE)
get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
set(CUSPARSE_LIBRARIES "cusparse")
set(CUBLAS_FOUND TRUE)
set(CUBLAS_LIBRARIES "cublas")
endif()
if (XSDK_ENABLE_C)
@@ -184,19 +176,6 @@ endif()
# Process configuration options
#-------------------------------------------------------------------------------
# MFEM_PRECISION -> MFEM_USE_SINGLE, MFEM_USE_DOUBLE
if (MFEM_PRECISION MATCHES "^(double|Double|DOUBLE)$")
set(MFEM_USE_SINGLE OFF)
set(MFEM_USE_DOUBLE ON)
elseif (MFEM_PRECISION MATCHES "^(single|Single|SINGLE)$")
set(MFEM_USE_SINGLE ON)
set(MFEM_USE_DOUBLE OFF)
else()
message(FATAL_ERROR " *** Invalid floating-point precision: "
"MFEM_PRECISION = ${MFEM_PRECISION}")
endif()
message(STATUS "Floating-point precision: MFEM_PRECISION = ${MFEM_PRECISION}")
# MFEM_DEBUG
if (CMAKE_BUILD_TYPE MATCHES "Debug|debug|DEBUG")
set(MFEM_DEBUG ON)
@@ -204,23 +183,6 @@ else()
set(MFEM_DEBUG OFF)
endif()
# Shared build on Windows
if (WIN32 AND BUILD_SHARED_LIBS)
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
"Automatically export symbols for shared Windows DLL build")
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
# the build directory, so that the .exe files can find the .dll files at
# runtime:
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
# Note: CMake tests are run from the build-tree sub-directory where the test
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
# work fine.
# Not strictly necessary:
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
endif()
# AMD HIP
if (MFEM_USE_HIP)
if (HIP_ARCH)
@@ -334,9 +296,6 @@ if (MFEM_USE_SUNDIALS)
if (MFEM_USE_CUDA)
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
endif()
if (MFEM_USE_HIP)
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
endif()
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
endif()
@@ -353,7 +312,6 @@ endif()
if (MFEM_USE_MUMPS)
if (MFEM_USE_MPI)
find_package(MUMPS REQUIRED mumps_common pord)
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
else()
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
endif()
@@ -487,32 +445,17 @@ if (MFEM_USE_ADIOS2)
find_package(ADIOS2 REQUIRED)
endif()
# MKL CPardiso
if (MFEM_USE_MKL_CPARDISO)
if (MFEM_USE_MPI)
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
endif()
endif()
# MKL Pardiso
if (MFEM_USE_MKL_PARDISO)
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
endif()
# PARELAG
if (MFEM_USE_PARELAG)
find_package(PARELAG REQUIRED)
endif()
# Tribol
if (MFEM_USE_TRIBOL)
if (MFEM_USE_MPI)
find_package(Tribol REQUIRED tribol redecomp)
else()
message(FATAL_ERROR " *** Tribol requires that MPI be enabled.")
endif()
endif()
# Enzyme
if (MFEM_USE_ENZYME)
find_package(ENZYME REQUIRED)
@@ -557,8 +500,8 @@ find_package(Threads REQUIRED)
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
@@ -576,7 +519,6 @@ list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
@@ -632,19 +574,7 @@ target_include_directories(mfem
PUBLIC
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
# The INSTALL_INTERFACE is handled below
${TPL_INCLUDE_DIRS})
if (MFEM_USE_MPI)
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
endif()
endif()
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
@@ -656,7 +586,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
endif()
# Generate configuration file in the build directory: config/_config.hpp.
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
configure_file(
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
"${PROJECT_BINARY_DIR}/config/_config.hpp")
@@ -667,34 +596,16 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
foreach(Header mfem.hpp mfem-performance.hpp)
message(STATUS
"Writing substitute header --> \"${Header}\"")
file(WRITE "${PROJECT_BINARY_DIR}/${Header}.tmp"
file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
"// Auto-generated file.
#define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
#include \"${PROJECT_SOURCE_DIR}/${Header}\"
")
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different
"${PROJECT_BINARY_DIR}/${Header}.tmp"
"${PROJECT_BINARY_DIR}/${Header}"
)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove
"${PROJECT_BINARY_DIR}/${Header}.tmp"
)
# This version will be installed in the top include directory:
file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
"// Auto-generated file.
#include \"mfem/${Header}\"
")
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
)
endforeach()
endif()
@@ -786,15 +697,13 @@ add_subdirectory(doc)
message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
set(INSTALL_INCLUDE_DIR include
CACHE PATH "Relative path for installing header files.")
set(INSTALL_BIN_DIR bin
CACHE PATH "Relative path for installing the binaries.")
set(INSTALL_LIB_DIR lib
CACHE PATH "Relative path for installing the library.")
# other options: "share/mfem/cmake", "lib/mfem/cmake"
set(INSTALL_CMAKE_DIR lib/cmake/mfem
CACHE PATH "Relative path for installing cmake config files.")
target_include_directories(mfem BEFORE
target_include_directories(mfem
PUBLIC
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
@@ -806,9 +715,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
# Install the library
install(TARGETS ${PROJECT_NAME}
EXPORT ${PROJECT_NAME_UC}Targets
RUNTIME DESTINATION ${INSTALL_BIN_DIR}
LIBRARY DESTINATION ${INSTALL_LIB_DIR}
ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
DESTINATION ${INSTALL_LIB_DIR})
# Install the master headers
foreach(Header mfem.hpp mfem-performance.hpp)
@@ -846,8 +753,10 @@ endif()
# Install the configuration header files
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
${PROJECT_SOURCE_DIR}/config/config.hpp
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
RENAME config.hpp)
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
# Package the whole thing up nicely
+2 -12
View File
@@ -121,7 +121,6 @@ The MFEM source code has the following structure:
├── fem
│ ├── ceed
│ ├── fe
│ ├── integ
│ ├── lor
│ ├── moonolith
│ ├── qinterp
@@ -135,10 +134,8 @@ The MFEM source code has the following structure:
│ ├── adjoint
│ ├── autodiff
│ ├── common
│ ├── dpg
│ ├── electromagnetics
│ ├── gslib
│ ├── hdiv-linear-solver
│ ├── hooke
│ ├── meshing
│ ├── mtop
@@ -149,10 +146,8 @@ The MFEM source code has the following structure:
│ ├── performance
│ ├── shifted
│ ├── solvers
│ ├── spde
│ ├── tools
── toys
│ └── tribol
── toys
└── tests
├── benchmarks
├── convergence
@@ -214,7 +209,7 @@ device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
#### Utilities, building and documentation
@@ -347,9 +342,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- Code specifics
- All new public, protected, and private classes, methods, data members, and
functions have Doxygen-style documentation in source comments.
- Math formulas can be included in the Doxygen comments either with standard
LaTeX (`$..$` and `$$..$$`) for portions that need detailed explanation, or with
[Unicode](https://www.unicodeit.net/) or plain text when short or readable description is preferable.
- In addition to arguments and functionality, documentation should include the
current limitations of the code, any background information that is
implicitly assumed in the implementation, and the ownership and lifetime
@@ -363,8 +355,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
conflicted files in the commit message.
- All significant new features and changes should be documented in CHANGELOG.
- New examples and miniapps should have documentation on the MFEM webpage.
- The general floating-point type `real_t` should be used, rather than
`float` or `double`, except in special cases where only one is possible.
### Pull Requests
+14 -47
View File
@@ -75,8 +75,6 @@ and miniapps. See https://glvis.org and https://mfem.org/building.
Quick start with GNU make
=========================
See also: https://mfem.org/building
Serial build:
make serial -j 4
@@ -85,7 +83,6 @@ Parallel build:
(build METIS 4 in ../metis-4.0 relative to mfem/)
(build hypre in ../hypre relative to mfem/)
make parallel -j 4
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
CUDA build:
make cuda -j 4
@@ -119,7 +116,6 @@ Parallel build:
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
make -j 4
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
CUDA build:
(this build requires CMake 3.8 or newer)
@@ -288,15 +284,6 @@ MFEM_USE_METIS = YES/NO
option in the library will be Cartesian partitioning with box meshes, and
thus most of the parallel examples and miniapps will fail.
MFEM_PRECISION = double/Double/DOUBLE/single/Single/SINGLE
Use single (float type) or double floating-point precision. In the
configuration header 'config/_config.hpp' this option is represented by
defining exactly one of the macros: MFEM_USE_DOUBLE, or MFEM_USE_SINGLE.
In the exported config files 'config.mk' and 'MFEMConfig.cmake', the option
is represented by the variables MFEM_USE_DOUBLE and MFEM_USE_SINGLE defined
as YES/NO (make) or ON/OFF (cmake). For more details see
https://github.com/orgs/mfem/discussions/4207
MFEM_DEBUG = YES/NO
Choose debug/optimized build. The debug build enables a number of messages
and consistency checks that may simplify bug-hunting.
@@ -575,11 +562,6 @@ MFEM_USE_PARELAG = YES/NO
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
currently only concerns the miniapps.
MFEM_USE_TRIBOL = YES/NO
Enables the miniapps that use the Tribol library. MFEM does not currently
use Tribol. In fact, Tribol is dependent on MFEM. Therefore, this option
currently only concerns the miniapps.
MFEM_USE_ENZYME = YES/NO
Enables automatic differentiation support through the LLVM plugin Enzyme.
This requires the compiler to be set to clang (>=14.0.0). We also advise to
@@ -616,13 +598,9 @@ The specific libraries and their options are:
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
HYPRE >= 2.22.1 (HYPRE built with CUDA)
HYPRE >= 2.23.0 (HYPRE built with HIP)
HYPRE >= 2.31.0 (runtime selectable HYPRE execution on CPU/GPU)
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
MFEM_USE_METIS_5 = YES (default is to use METIS 4). For building instructions,
see the following:
- METIS 4.0.3: https://mfem.org/building/#parallel-mpi-version-of-mfem
- METIS 5.1.0: https://mfem.org/building/#parallel-build-using-metis-5
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
Options: METIS_OPT, METIS_LIB.
Versions: METIS 4.0.3 or 5.1.0.
@@ -650,13 +628,9 @@ The specific libraries and their options are:
both MPI and hypre.
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
for CUDA.
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
for HIP.
URL: http://computing.llnl.gov/projects/sundials/sundials-software
URL: http://computation.llnl.gov/projects/sundials/sundials-software
Options: SUNDIALS_OPT, SUNDIALS_LIB.
Versions: SUNDIALS >= 5.0.0,
SUNDIALS >= 5.4.0 for CUDA support, and
SUNDIALS >= 5.7.0 for HIP support.
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
@@ -681,7 +655,8 @@ The specific libraries and their options are:
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
and PT-Scotch are optional dependencies.
The support for STRUMPACK was added in MFEM v3.3.2.
The support for STRUMPACK was added in MFEM v3.3.2 and it requires STRUMPACK
2.0.0 or later.
URL: http://portal.nersc.gov/project/sparse/strumpack
Options: STRUMPACK_OPT, STRUMPACK_LIB.
Versions: STRUMPACK >= 3.0.0.
@@ -714,20 +689,18 @@ The specific libraries and their options are:
Options: NETCDF_OPT, NETCDF_LIB.
Versions: NetCDF >= 4.4.0.
- PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.21 or higher of
the PETSC dev branch is required, though depending on the functionality older
versions may work too. The MFEM and PETSc builds can share common libraries,
e.g., hypre and SUNDIALS. Here's an example configuration, assuming
- PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.8 or higher of
the PETSC dev branch is required. The MFEM and PETSc builds can share common
libraries, e.g., hypre and SUNDIALS. Here's an example configuration, assuming
PETSc has been cloned on the same level as mfem and hypre:
./configure --download-fblaslapack=yes --download-scalapack=yes \
--download-mumps=yes --download-suitesparse=yes \
--with-hypre-dir=../hypre/src/hypre \
--with-hypre-dir=../hypre-2.10.0b/src/hypre \
--with-shared-libraries=0
When building PETSc with HIP, one may need to add a flag like -std=c2x to
CFLAGS to allow proper parsing of the hipsparse header under C.
URL: https://www.mcs.anl.gov/petsc
Options: PETSC_OPT, PETSC_LIB.
Versions: PETSc >= 3.21.0, older versions may work too.
Versions: PETSc >= 3.8.0 (PETSc build without CUDA)
PETSc >= 3.15.0 (PETSc built with CUDA)
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
uses some of the PETSc options when compiled.
@@ -817,13 +790,13 @@ The specific libraries and their options are:
URL: https://github.com/CEED/libCEED
https://ceed.exascaleproject.org/libceed
Options: CEED_DIR, CEED_OPT, CEED_LIB.
Versions: libCEED >= 0.12.
Versions: libCEED >= 0.10.
- RAJA (optional), used when MFEM_USE_RAJA = YES.
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
URL: https://github.com/LLNL/RAJA
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
Versions: RAJA >= 2022.10.3.
Versions: RAJA >= 0.14.0.
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
URL: https://bitbucket.org/zulianp/par_moonolith
@@ -870,10 +843,6 @@ The specific libraries and their options are:
URL: https://github.com/LLNL/parelag
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
- Tribol, used when MFEM_USE_TRIBOL = YES.
URL: https://github.com/LLNL/Tribol
Options: TRIBOL_DIR, TRIBOL_OPT, TRIBOL_LIB.
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
URL: https://github.com/EnzymeAD/Enzyme
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
@@ -984,7 +953,6 @@ The following options are equivalent to the GNU make options with the same name:
MFEM_USE_MPI
MFEM_USE_METIS - Set to ${MFEM_USE_MPI}, can be overwritten.
MFEM_PRECISION
MFEM_USE_LIBUNWIND
MFEM_USE_LAPACK
MFEM_THREAD_SAFE
@@ -1018,7 +986,6 @@ MFEM_USE_CALIPER
MFEM_USE_FMS
MFEM_USE_BENCHMARK
MFEM_USE_PARELAG
MFEM_USE_TRIBOL
MFEM_USE_ENZYME
The following options are CMake specific:
+1 -1
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@@ -1,6 +1,6 @@
BSD 3-Clause License
Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
All rights reserved.
Redistribution and use in source and binary forms, with or without
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
-4
View File
@@ -287,7 +287,3 @@ ENDIF()
IF (DEFINED TPL_ENABLE_PARELAG)
SET(MFEM_USE_PARELAG ${TPL_ENABLE_PARELAG} CACHE BOOL "Enable ParELAG" FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_TRIBOL)
SET(MFEM_USE_TRIBOL ${TPL_ENABLE_TRIBOL} CACHE BOOL "Enable Tribol" FORCE)
ENDIF()
+1 -6
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -18,8 +18,6 @@ set(MFEM_GIT_STRING "@MFEM_GIT_STRING@")
set(MFEM_USE_MPI @MFEM_USE_MPI@)
set(MFEM_USE_METIS @MFEM_USE_METIS@)
set(MFEM_USE_METIS_5 @MFEM_USE_METIS_5@)
set(MFEM_USE_DOUBLE @MFEM_USE_DOUBLE@)
set(MFEM_USE_SINGLE @MFEM_USE_SINGLE@)
set(MFEM_DEBUG @MFEM_DEBUG@)
set(MFEM_USE_EXCEPTIONS @MFEM_USE_EXCEPTIONS@)
set(MFEM_USE_ZLIB @MFEM_USE_ZLIB@)
@@ -57,14 +55,11 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
set(MFEM_USE_TRIBOL @MFEM_USE_TRIBOL@)
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
+59 -76
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -39,19 +39,10 @@
// Description of the git commit used to build MFEM.
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
#cmakedefine MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
#cmakedefine MFEM_USE_MPI
// Use double-precision floating point type
#cmakedefine MFEM_USE_DOUBLE
// Use single-precision floating point type
#cmakedefine MFEM_USE_SINGLE
// Enable debug checks in MFEM.
#cmakedefine MFEM_DEBUG
@@ -86,102 +77,97 @@
// Internal MFEM option: enable group/batch allocation for some small objects.
#cmakedefine MFEM_USE_MEMALLOC
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Enable MFEM functionality based on the SuiteSparse library.
#cmakedefine MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
#cmakedefine MFEM_USE_SUPERLU
#cmakedefine MFEM_USE_SUPERLU5
// Enable MFEM functionality based on the MUMPS library.
#cmakedefine MFEM_USE_MUMPS
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
// Enable MFEM functionality based on the STRUMPACK library.
#cmakedefine MFEM_USE_STRUMPACK
// Enable functionality based on the Ginkgo library.
// Enable functionality based on the Ginkgo library
#cmakedefine MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// Enable MFEM functionality based on the AmgX library
#cmakedefine MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable MFEM functionality based on the GnuTLS library
#cmakedefine MFEM_USE_GNUTLS
// Enable Sidre support.
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
#cmakedefine MFEM_USE_SIMD
// Enable FMS support.
#cmakedefine MFEM_USE_FMS
// Enable Conduit support.
#cmakedefine MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
#cmakedefine MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
#cmakedefine MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
#cmakedefine MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
#cmakedefine MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
#cmakedefine MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HIOP library.
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the GSLIB library
#cmakedefine MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
// Enable MFEM functionality based on the NetCDF library
#cmakedefine MFEM_USE_NETCDF
// Enable MFEM functionality based on the PETSc library
#cmakedefine MFEM_USE_PETSC
// Enable MFEM functionality based on the SLEPc library
#cmakedefine MFEM_USE_SLEPC
// Enable MFEM functionality based on the Sidre library
#cmakedefine MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes
#cmakedefine MFEM_USE_SIMD
// Enable MFEM functionality based on the FMS library
#cmakedefine MFEM_USE_FMS
// Enable MFEM functionality based on Conduit
#cmakedefine MFEM_USE_CONDUIT
// Enable MFEM functionality based on the PUMI library
#cmakedefine MFEM_USE_PUMI
// Enable MFEM functionality based on the Moonolith library
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HiOp library
#cmakedefine MFEM_USE_HIOP
// Build the GPU/CUDA-enabled version of the MFEM library.
// Requires a CUDA compiler (nvcc).
#cmakedefine MFEM_USE_CUDA
// Build the AMD GPU/HIP-enabled version of the MFEM library.
// Build the HIP-enabled version of the MFEM library.
// Requires a HIP compiler (hipcc).
#cmakedefine MFEM_USE_HIP
// Enable functionality based on the RAJA library.
// Enable MFEM functionality based on the RAJA library
#cmakedefine MFEM_USE_RAJA
// Enable functionality based on the OCCA library.
// Enable MFEM functionality based on the OCCA library
#cmakedefine MFEM_USE_OCCA
// Enable functionality based on the libCEED library.
// Enable MFEM functionality based on the libCEED library
#cmakedefine MFEM_USE_CEED
// Enable functionality based on the Caliper library.
#cmakedefine MFEM_USE_CALIPER
// Enable functionality based on the Algoim library.
#cmakedefine MFEM_USE_ALGOIM
// Enable functionality based on the Umpire library.
// Enable MFEM functionality based on the Umpire library
#cmakedefine MFEM_USE_UMPIRE
// Enable IO functionality based on the ADIOS2 library.
// Enable MFEM functionality based on the ADIOS2 library
#cmakedefine MFEM_USE_ADIOS2
// Enable MFEM functionality based on the Caliper library
#cmakedefine MFEM_USE_CALIPER
// Enable MFEM functionality based on the Algoim library
#cmakedefine MFEM_USE_ALGOIM
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
// Enable MFEM functionality based on the SUNDIALS libraries.
#cmakedefine MFEM_USE_SUNDIALS
// Version of HYPRE used for building MFEM.
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
@@ -192,16 +178,13 @@
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
#cmakedefine MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
#cmakedefine MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
#cmakedefine MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
// Enable Enzyme for AD
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -16,7 +16,7 @@
include(MfemCmakeUtilities)
mfem_find_package(Algoim ALGOIM ALGOIM_DIR
"include;src" "algoim_quad.hpp"
"include" "algoim_quad.hpp"
"" ""
"Paths to headers required by Algoim."
"Libraries required by Algoim.")
"Paths to headers required by Algoim."
"Libraries required by Algoim.")
+2 -11
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -18,13 +18,4 @@ include(MfemCmakeUtilities)
# Note: components are enabled based on the find_package() parameters.
mfem_find_package(Axom AXOM AXOM_DIR "include" "" "lib" ""
"Paths to headers required by Axom." "Libraries required by Axom."
ADD_COMPONENT core "include" axom/core.hpp "lib" axom_core
ADD_COMPONENT inlet "include" axom/inlet.hpp "lib" axom_inlet
ADD_COMPONENT klee "include" axom/klee.hpp "lib" axom_klee
ADD_COMPONENT lumberjack "include" axom/lumberjack.hpp "lib" axom_lumberjack
ADD_COMPONENT mint "include" axom/mint.hpp "lib" axom_mint
ADD_COMPONENT multimat "include" axom/multimat.hpp "lib" axom_multimat
ADD_COMPONENT quest "include" axom/quest.hpp "lib" axom_quest
ADD_COMPONENT sidre "include" axom/sidre.hpp "lib" axom_sidre
ADD_COMPONENT slam "include" axom/slam.hpp "lib" axom_slam
ADD_COMPONENT slic "include" axom/slic.hpp "lib" axom_slic)
ADD_COMPONENT Axom "include" axom/config.hpp "lib" axom)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+5 -16
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -21,26 +21,15 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
# we only need HDF5 if Conduit was built with HDF5 support
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
"Additional packages required by Conduit.")
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
# MFEM's FindHDF5.cmake is not used.
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
else()
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
endif()
include(MfemCmakeUtilities)
mfem_find_package(Conduit CONDUIT CONDUIT_DIR
"include;include/conduit" conduit.hpp "lib" conduit
"Paths to headers required by Conduit." "Libraries required by Conduit."
ADD_COMPONENT blueprint
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint
ADD_COMPONENT blueprint_mpi
"include;include/conduit" conduit_blueprint_mpi.hpp "lib" conduit_blueprint_mpi
ADD_COMPONENT relay
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
ADD_COMPONENT relay_mpi
"include;include/conduit" conduit_relay_mpi.hpp "lib" conduit_relay_mpi)
ADD_COMPONENT blueprint
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -31
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,13 +14,9 @@
# - HYPRE_LIBRARIES
# - HYPRE_INCLUDE_DIRS
# - HYPRE_VERSION
# - HYPRE_USING_CUDA (internal)
# - HYPRE_USING_HIP (internal)
if (HYPRE_FOUND)
if (HYPRE_USING_CUDA)
find_package(CUDAToolkit REQUIRED)
endif()
if (HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
@@ -31,20 +27,6 @@ endif()
include(MfemCmakeUtilities)
mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
"Paths to headers required by HYPRE." "Libraries required by HYPRE."
CHECK_BUILD HYPRE_USING_CUDA FALSE
"
#undef HYPRE_USING_CUDA
#include <HYPRE_config.h>
#ifndef HYPRE_USING_CUDA
#error HYPRE is built without CUDA.
#endif
int main()
{
return 0;
}
"
CHECK_BUILD HYPRE_USING_HIP FALSE
"
#undef HYPRE_USING_HIP
@@ -75,18 +57,6 @@ if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
endif()
endif()
if (HYPRE_FOUND AND HYPRE_USING_CUDA)
find_package(CUDAToolkit REQUIRED)
get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
get_target_property(CURAND_LIBRARIES CUDA::curand LOCATION)
get_target_property(CUBLAS_LIBRARIES CUDA::cublas LOCATION)
list(APPEND HYPRE_LIBRARIES ${CUSPARSE_LIBRARIES} ${CURAND_LIBRARIES}
${CUBLAS_LIBRARIES})
set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
"HYPRE libraries + dependencies." FORCE)
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
endif()
if (HYPRE_FOUND AND HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,27 +0,0 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - MKL_PARDISO_FOUND
# - MKL_PARDISO_LIBRARIES
# - MKL_PARDISO_INCLUDE_DIRS
if(NOT MKL_LIBRARY_DIR)
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
set(MKL_LIBRARY_DIR "lib/intel64")
endif()
include(MfemCmakeUtilities)
mfem_find_package(MKL_PARDISO MKL_PARDISO
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+5 -31
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -11,39 +11,13 @@
# Sets the following variables:
# - MUMPS_FOUND
# - MUMPS_LIBRARIES
# - MUMPS_INCLUDE_DIRS
# - MUMPS_VERSION
# - MUMPS_LIBRARIES
include(MfemCmakeUtilities)
# Toggle which precision of MUMPS to use depending on the precision of MFEM.
if (MFEM_USE_DOUBLE)
set(_mumps_header dmumps_c.h)
set(_mumps_lib dmumps)
elseif(MFEM_USE_SINGLE)
set(_mumps_header smumps_c.h)
set(_mumps_lib smumps)
endif()
mfem_find_package(MUMPS MUMPS MUMPS_DIR
"include" ${_mumps_header} "lib" ${_mumps_lib}
"include" dmumps_c.h "lib" dmumps
"Paths to headers required by MUMPS."
"Libraries required by MUMPS."
ADD_COMPONENT mumps_common "include" ${_mumps_header} "lib" mumps_common
ADD_COMPONENT pord "include" ${_mumps_header} "lib" pord)
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
${CMAKE_CURRENT_BINARY_DIR}/config
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
else()
message(FATAL_ERROR "Unable to determine MUMPS version.")
endif()
endif()
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
+6 -17
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,17 +14,11 @@
# - NETCDF_LIBRARIES
# - NETCDF_INCLUDE_DIRS
# Suppress warning about HDF5_ROOT being set
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
include(MfemCmakeUtilities)
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# We need to guard against the case where HDF5 was already found but without
# the HL extensions (in which case mfem_find_package will treat the package
@@ -41,11 +35,6 @@ mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
# The netcdf library will always be the first element of NETCDF_LIBRARIES
# and we need to insert after that library but before the hdf5 library, so
# position 1 is used
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
# FindHDF5.cmake is not used.)
if (HDF5_C_LIBRARY_hdf5_hl)
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
if (NOT NetCDF_FIND_QUIETLY)
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
endif()
endif()
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
# is already added to NETCDF_LIBRARIES)
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+12 -22
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,27 +14,17 @@
# - RAJA_LIBRARIES
# - RAJA_INCLUDE_DIRS
if (RAJA_FOUND)
return()
include(MfemCmakeUtilities)
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
"Paths to headers required by RAJA." "Libraries required by RAJA.")
if (NOT RAJA_CONFIG_CMAKE)
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
endif()
message(STATUS "Looking for RAJA ...")
if (RAJA_DIR)
message(STATUS " in RAJA_DIR = ${RAJA_DIR}")
find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
endif()
if (NOT RAJA_FOUND)
message(STATUS " in standard CMake locations")
find_package(RAJA CONFIG)
endif()
if (RAJA_FOUND)
set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
message(STATUS
"Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
else()
set(msg STATUS)
if (RAJA_FIND_REQUIRED)
set(msg FATAL_ERROR)
if (EXISTS "${RAJA_CONFIG_CMAKE}")
include("${RAJA_CONFIG_CMAKE}")
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
message(FATAL_ERROR
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
endif()
message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
endif()
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
ADD_COMPONENT NVector_Cuda
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
ADD_COMPONENT NVector_Hip
"include" nvector/nvector_hip.h "lib" sundials_nvechip
ADD_COMPONENT NVector_ParHyp
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
ADD_COMPONENT NVector_Parallel
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
ADD_COMPONENT NVector_MPIPlusX
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
-22
View File
@@ -1,22 +0,0 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - TRIBOL_FOUND
# - TRIBOL_LIBRARIES
# - TRIBOL_INCLUDE_DIRS
include(MfemCmakeUtilities)
# Note: components are enabled based on the find_package() parameters.
mfem_find_package(Tribol TRIBOL TRIBOL_DIR "include" tribol/config.hpp "lib" tribol
"Paths to headers required by Tribol." "Libraries required by Tribol."
ADD_COMPONENT redecomp
"include" redecomp/redecomp.hpp "lib" redecomp)
+2 -19
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,23 +14,6 @@
# - UMPIRE_LIBRARIES
# - UMPIRE_INCLUDE_DIRS
if (NOT umpire_DIR AND UMPIRE_DIR)
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
endif()
message(STATUS "Looking for UMPIRE ...")
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
message(STATUS " umpire_DIR = ${umpire_DIR}")
find_package(umpire CONFIG)
find_package(umpire REQUIRED CONFIG)
set(UMPIRE_FOUND ${umpire_FOUND})
set(UMPIRE_LIBRARIES "umpire")
if (UMPIRE_FOUND)
message(STATUS
"Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
else()
set(msg STATUS)
if (UMPIRE_FIND_REQUIRED)
set(msg FATAL_ERROR)
endif()
message(${msg}
"UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
endif()
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+65 -45
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -103,6 +103,25 @@ macro(add_mfem_examples EXE_SRCS)
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
target_link_libraries(${EXE_NAME} mfem)
if (MFEM_USE_MPI)
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
# Language-specific include directories:
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endforeach(SRC_FILE)
endmacro()
@@ -153,6 +172,26 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
if (EXTRA_DEFINES_LIST)
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
endif()
# Handle the MPI separately
if (MFEM_USE_MPI)
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
endif()
if (MPI_CXX_LINK_FLAGS)
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
endif()
endif()
endmacro()
@@ -397,9 +436,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
break()
endif()
endforeach()
if (Required AND NOT ${ReqPack}_FOUND)
if (${Required} AND NOT ${ReqPack}_FOUND)
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
endif()
endif()
endif()
@@ -465,18 +504,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
endif()
get_target_property(IsImported ${TargetName} IMPORTED)
if (IsImported)
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
if (NOT ImportConfig)
set(ImportConfig RELEASE)
list(FIND ImpConfigs ${ImportConfig} _Index)
if (_Index EQUAL -1)
list(GET ImpConfigs 0 ImportConfig)
endif()
endif()
set(ImportConfigSuffix "_${ImportConfig}")
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
list(FIND ImpConfigs ${ImportConfig} _Index)
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
set(ImportConfig "NO_CONFIG")
set(ImportConfigSuffix "")
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
@@ -494,8 +529,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
else()
# Set _Pack_LIBS from the target properties for ImportConfig
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
INTERFACE_LINK_LIBRARIES)
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
get_target_property(_value ${TargetName} ${_prop})
if (_value)
list(APPEND _Pack_LIBS ${_value})
@@ -746,7 +780,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
endforeach()
endif()
set(AddInterfaceLinkLibs TRUE)
if ("${type}" STREQUAL "STATIC_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
@@ -768,27 +801,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
# The INTERFACE_LINK_LIBRARIES property is handled below.
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
set(AddInterfaceLinkLibs FALSE)
endif()
if (AddInterfaceLinkLibs)
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
if (Libs)
foreach(Lib ${Libs})
if (NOT (TARGET ${Lib}))
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
endif()
list(APPEND LinkOpts "${Lib}")
else()
mfem_get_target_options(${Lib} COpts LOpts)
list(APPEND CompileOpts ${COpts})
@@ -796,6 +813,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
endif()
endforeach()
endif()
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
endif()
# Other potentially relevant properties:
@@ -819,9 +843,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
endfunction(mfem_get_target_options)
@@ -842,17 +863,16 @@ function(mfem_export_mk_files)
# Convert Boolean vars to YES/NO without writing the values to cache
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
MFEM_USE_SINGLE MFEM_USE_DOUBLE MFEM_DEBUG MFEM_USE_EXCEPTIONS
MFEM_USE_ZLIB MFEM_USE_LIBUNWIND MFEM_USE_LAPACK MFEM_THREAD_SAFE
MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS
MFEM_USE_SUITESPARSE MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS
MFEM_USE_STRUMPACK MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS
MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE
MFEM_USE_FMS MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB
MFEM_USE_CUDA MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED
MFEM_USE_CALIPER MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2
MFEM_USE_MKL_CPARDISO MFEM_USE_MKL_PARDISO MFEM_USE_ADFORWARD
MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG MFEM_USE_TRIBOL
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_SUITESPARSE
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
foreach(var ${CONFIG_MK_BOOL_VARS})
if (${var})
@@ -874,7 +894,7 @@ function(mfem_export_mk_files)
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
endforeach()
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
+3 -87
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -23,62 +23,6 @@
#include "_config.hpp"
#endif
namespace mfem
{
#if (defined(MFEM_USE_CUDA) && defined(__CUDACC__)) || \
(defined(MFEM_USE_HIP) && defined(__HIPCC__))
#define MFEM_HOST_DEVICE __host__ __device__
#else
#define MFEM_HOST_DEVICE
#endif
// MFEM precision configuration
#if defined MFEM_USE_SINGLE && defined MFEM_USE_DOUBLE
#error "DOUBLE and SINGLE precision cannot both be specified"
#endif
#ifdef MFEM_USE_SINGLE
typedef float real_t;
#elif defined MFEM_USE_DOUBLE
typedef double real_t;
#else
#error "Either DOUBLE or SINGLE precision must be specified"
#endif
MFEM_HOST_DEVICE
constexpr real_t operator""_r(long double v)
{
return static_cast<real_t>(v);
}
MFEM_HOST_DEVICE
constexpr real_t operator""_r(unsigned long long v)
{
return static_cast<real_t>(v);
}
} // namespace mfem
// Return value for main function in examples that should be skipped by testing
// in some case. This return value prevents failures in testing.
#define MFEM_SKIP_RETURN_VALUE 242
// Request a global object to be instantiated for each thread in its TLS.
#define MFEM_THREAD_LOCAL thread_local
// MFEM_DEPRECATED macro to mark obsolete functions and methods
// see https://stackoverflow.com/questions/295120/c-mark-as-deprecated
#if defined(__GNUC__) || defined(__clang__)
#define MFEM_DEPRECATED __attribute__((deprecated))
#elif defined(_MSC_VER)
#define MFEM_DEPRECATED __declspec(deprecated)
#else
#pragma message("WARNING: You need to implement MFEM_DEPRECATED for this compiler")
#define MFEM_DEPRECATED
#endif
// Common configuration macros
#if (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 7)) || defined(__clang__)
@@ -86,30 +30,11 @@ constexpr real_t operator""_r(unsigned long long v)
#endif
// Windows specific options
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
#ifdef _WIN32
#ifndef _USE_MATH_DEFINES
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
#define _USE_MATH_DEFINES
#endif
// Macro MFEM_EXPORT: this macro is used when declaring exported global
// variables and static class variables in public header files, e.g.:
// extern MFEM_EXPORT Geometry Geometries;
// static MFEM_EXPORT Device device_singleton;
// In cases where a class contains multiple static variables, instead of marking
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
// e.g.:
// class MFEM_EXPORT MemoryManager ...
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
// variable that needs MFEM_EXPORT does not have it. However, builds with
// optional external libraries are not tested and may require separate checks to
// determine the necessity of MFEM_EXPORT.
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
#ifdef mfem_EXPORTS
#define MFEM_EXPORT __declspec(dllexport)
#else
#define MFEM_EXPORT __declspec(dllimport)
#endif
#else
#define MFEM_EXPORT
#endif
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
// the following macro allows us to get M_PI and some needed functions, e.g.
@@ -120,15 +45,6 @@ constexpr real_t operator""_r(unsigned long long v)
// Check dependencies:
// Define MFEM_MPI_REAL_T to be the appropriate MPI real type
#ifdef MFEM_USE_MPI
#ifdef MFEM_USE_SINGLE
#define MFEM_MPI_REAL_T MPI_FLOAT
#elif defined MFEM_USE_DOUBLE
#define MFEM_MPI_REAL_T MPI_DOUBLE
#endif
#endif
// Options that require MPI
#ifndef MFEM_USE_MPI
#ifdef MFEM_USE_SUPERLU
+17 -29
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -30,28 +30,19 @@
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
// The absolute path of the MFEM source prefix.
// The absolute path of the MFEM source prefix
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
// The absolute path of the MFEM installation prefix.
// The absolute path of the MFEM installation prefix
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
// Description of the git commit used to build MFEM.
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
// Enable shared library build of MFEM.
// #define MFEM_SHARED_BUILD
// Build the parallel MFEM library.
// Requires an MPI compiler, and the libraries HYPRE and METIS.
// #define MFEM_USE_MPI
// Use double-precision floating point type
// #define MFEM_USE_DOUBLE
// Use single-precision floating point type
// #define MFEM_USE_SINGLE
// Enable debug checks in MFEM.
// #define MFEM_DEBUG
@@ -97,7 +88,7 @@
// Enable MFEM functionality based on the SuiteSparse library.
// #define MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the SuperLU_DIST library.
// Enable MFEM functionality based on the SuperLU library.
// #define MFEM_USE_SUPERLU
// #define MFEM_USE_SUPERLU5
@@ -108,40 +99,40 @@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
// Enable MFEM features based on the Ginkgo library.
// Enable MFEM features based on the Ginkgo library
// #define MFEM_USE_GINKGO
// Enable MFEM functionality based on the AmgX library.
// #define MFEM_USE_AMGX
// Enable secure socket streams based on the GNUTLS library.
// Enable secure socket streams based on the GNUTLS library
// #define MFEM_USE_GNUTLS
// Enable Sidre support.
// Enable Sidre support
// #define MFEM_USE_SIDRE
// Enable the use of SIMD in the high performance templated classes.
// Enable the use of SIMD in the high performance templated classes
// #define MFEM_USE_SIMD
// Enable FMS support.
// Enable FMS support
// #define MFEM_USE_FMS
// Enable Conduit support.
// Enable Conduit support
// #define MFEM_USE_CONDUIT
// Enable functionality based on the NetCDF library (reading CUBIT files).
// Enable functionality based on the NetCDF library (reading CUBIT files)
// #define MFEM_USE_NETCDF
// Enable functionality based on the PETSc library.
// Enable functionality based on the PETSc library
// #define MFEM_USE_PETSC
// Enable functionality based on the SLEPc library.
// Enable functionality based on the SLEPc library
// #define MFEM_USE_SLEPC
// Enable functionality based on the MPFR library.
// #define MFEM_USE_MPFR
// Enable MFEM functionality based on the PUMI library.
// Enable MFEM functionality based on the PUMI library
// #define MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
@@ -150,7 +141,7 @@
// Enable MFEM functionality based on the HIOP library.
// #define MFEM_USE_HIOP
// Enable MFEM functionality based on the GSLIB library.
// Enable MFEM functionality based on the GSLIB library
// #define MFEM_USE_GSLIB
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
@@ -192,13 +183,10 @@
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
// Enable interface to the MKL Pardiso library.
// #define MFEM_USE_MKL_PARDISO
// Use forward mode for automatic differentiation.
// Use forward mode for automatic differentiation
// #define MFEM_USE_ADFORWARD
// Enable the use of the CoDiPack library for AD.
// Enable the use of the CoDiPack library for AD
// #define MFEM_USE_CODIPACK
// Enable functionality based on the Google Benchmark library.
+1 -5
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -18,8 +18,6 @@ MFEM_GIT_STRING = @MFEM_GIT_STRING@
MFEM_USE_MPI = @MFEM_USE_MPI@
MFEM_USE_METIS = @MFEM_USE_METIS@
MFEM_USE_METIS_5 = @MFEM_USE_METIS_5@
MFEM_USE_DOUBLE = @MFEM_USE_DOUBLE@
MFEM_USE_SINGLE = @MFEM_USE_SINGLE@
MFEM_DEBUG = @MFEM_DEBUG@
MFEM_USE_EXCEPTIONS = @MFEM_USE_EXCEPTIONS@
MFEM_USE_ZLIB = @MFEM_USE_ZLIB@
@@ -59,13 +57,11 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
MFEM_USE_TRIBOL = @MFEM_USE_TRIBOL@
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
# Compiler, compile options, and link options
+21 -32
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -19,11 +19,8 @@ if (NOT CMAKE_BUILD_TYPE)
endif()
# MFEM options. Set to mimic the default "defaults.mk" file.
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
set(MFEM_PRECISION "double" CACHE STRING
"Floating-point precision to use: single, or double")
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
option(MFEM_USE_ZLIB "Enable zlib for compressed data streams." OFF)
option(MFEM_USE_LIBUNWIND "Enable backtrace for errors." OFF)
@@ -62,12 +59,10 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
option(MFEM_USE_TRIBOL "Enable Tribol" OFF)
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
@@ -109,7 +104,12 @@ set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
# If hypre was compiled to depend on BLAS and LAPACK:
# set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
# "Packages that HYPRE depends on.")
# CUDA and HIP dependencies for HYPRE are handled in FindHYPRE.cmake.
if (MFEM_USE_CUDA)
# This is only necessary when hypre is built with cuda:
set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
"Libraries that HYPRE depends on.")
endif()
# HIP dependency for HYPRE is handled in FindHYPRE.cmake.
set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
@@ -133,18 +133,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
"Additional packages required by ParMETIS.")
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
"Path to the SuperLU_DIST library.")
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
"LAPACK" "BLAS" CACHE STRING
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
"Additional packages required by SuperLU_DIST.")
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
"Path to the MUMPS library.")
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
# Packages required by MUMPS, depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
"Additional packages required by MUMPS.")
# If the MPI package does not find all required Fortran libraries:
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -155,8 +153,7 @@ set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
# STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
# Starting with v2.2.0 of STRUMPACK, ParMETIS and Scotch are optional.
set(STRUMPACK_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"Scotch/ptscotch/ptscotcherr/scotch/scotcherr"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
"ScaLAPACK" "Scotch/ptscotch/ptscotcherr/scotch/scotcherr" CACHE STRING
"Additional packages required by STRUMPACK.")
# If the MPI package does not find all required Fortran libraries:
# set(STRUMPACK_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
@@ -213,15 +210,8 @@ set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
set(AXOM_DIR "${MFEM_DIR}/../axom" CACHE PATH "Path to the Axom library.")
# May need to add "Boost" as requirement.
if (MFEM_USE_SIDRE)
if (MFEM_USE_MPI)
set(Axom_REQUIRED_PACKAGES "Conduit/blueprint/blueprint_mpi/relay/relay_mpi" CACHE STRING
"Additional packages required by Axom.")
elseif()
set(Axom_REQUIRED_PACKAGES "Conduit/blueprint/relay" CACHE STRING
"Additional packages required by Axom.")
endif()
endif()
set(Axom_REQUIRED_PACKAGES "Conduit/relay/blueprint" CACHE STRING
"Additional packages required by Axom.")
set(PUMI_DIR "${MFEM_DIR}/../pumi-2.1.0" CACHE STRING
"Directory where PUMI is installed")
@@ -235,16 +225,19 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
# If RAJA is built with external CAMP:
# set(RAJA_REQUIRED_PACKAGES "camp"
# CACHE STRING "Packages that RAJA depends on.")
# set(camp_DIR "${MFEM_DIR}/../camp/lib/cmake/camp"
# CACHE PATH "Path to CAMP CMake files.")
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
set(ALGOIM_REQUIRED_PACKAGES "BLITZ" CACHE STRING
"Packages that ALGOIM depends on.")
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
@@ -258,10 +251,6 @@ set(PARELAG_INCLUDE_DIRS "${PARELAG_DIR}/src;${PARELAG_DIR}/build/src" CACHE
set(PARELAG_LIBRARIES "${PARELAG_DIR}/build/src/libParELAG.a" CACHE STRING
"The ParELAG library.")
set(TRIBOL_DIR "${MFEM_DIR}/../tribol" CACHE PATH "Path to Tribol")
set(Tribol_REQUIRED_PACKAGES "Axom/core/mint/slam/slic" CACHE STRING
"Additional packages required by Tribol")
set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
+16 -80
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
# gfx900, gfx1010, etc.
HIP_ARCH = gfx900
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
HIP_XCOMPILER =
HIP_XLINKER = -Wl,
@@ -120,7 +120,6 @@ MFEM_MPI_NP = 4
MFEM_USE_MPI = NO
MFEM_USE_METIS = $(MFEM_USE_MPI)
MFEM_USE_METIS_5 = NO
MFEM_PRECISION = double
MFEM_DEBUG = NO
MFEM_USE_EXCEPTIONS = NO
MFEM_USE_ZLIB = NO
@@ -161,27 +160,13 @@ MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_MKL_PARDISO = NO
MFEM_USE_MOONOLITH = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
MFEM_USE_BENCHMARK = NO
MFEM_USE_PARELAG = NO
MFEM_USE_TRIBOL = NO
MFEM_USE_ENZYME = NO
# Process MFEM_PRECISION -> MFEM_USE_SINGLE, MFEM_USE_DOUBLE
ifneq ($(filter double Double DOUBLE,$(MFEM_PRECISION)),)
MFEM_USE_DOUBLE = YES
MFEM_USE_SINGLE = NO
else ifneq ($(filter single Single SINGLE,$(MFEM_PRECISION)),)
MFEM_USE_DOUBLE = NO
MFEM_USE_SINGLE = YES
else ifeq ($(MAKECMDGOALS),config)
$(error Invalid floating-point precision: \
MFEM_PRECISION = $(MFEM_PRECISION))
endif
# MPI library compile and link flags
# These settings are used only when building MFEM with MPI + HIP
ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
@@ -281,9 +266,6 @@ endif
ifeq ($(MFEM_USE_CUDA),YES)
SUNDIALS_LIB += -lsundials_nveccuda
endif
ifeq ($(MFEM_USE_HIP),YES)
SUNDIALS_LIB += -lsundials_nvechip
endif
# If SUNDIALS was built with KLU:
# MFEM_USE_SUITESPARSE = YES
@@ -302,10 +284,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
-lsuperlu_dist_5.1.0
else
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
-lsuperlu_dist $(LAPACK_LIB)
-lsuperlu_dist -lblas
endif
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
@@ -329,15 +311,10 @@ MPI_FORTRAN_LIB = -lmpifort
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
MUMPS_OPT = -I$(MUMPS_DIR)/include
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib
ifeq ($(MFEM_USE_SINGLE),YES)
MUMPS_LIB += -lsmumps
else
MUMPS_LIB += -ldmumps
endif
MUMPS_LIB += -lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
# STRUMPACK library configuration
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
@@ -350,30 +327,16 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
$(SCOTCH_LIB) $(SCALAPACK_LIB)
# Ginkgo library configuration
# Ginkgo library configuration (currently not needed)
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
GINKGO_BUILD_TYPE=Release
ifeq ($(MFEM_USE_GINKGO),YES)
BASE_FLAGS = -std=c++14
endif
GINKGO_OPT = -isystem $(GINKGO_DIR)/include
GINKGO_LIB_DIR = $(sort $(dir $(wildcard\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
GINKGO_LINK_LIB_DIR = $(GINKGO_DIR)$(subst $(GINKGO_SEARCH_DIR),,$(GINKGO_LIB_DIR))
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.a\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.so\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dylib\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*d.dll)))
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.a\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.so\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dylib\
$(GINKGO_SEARCH_DIR)/lib*/libginkgo*.dll)))
GINKGO_LIB_DIR = $(sort $(dir $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*d.a $(GINKGO_DIR)/lib*/libginkgo*d.so $(GINKGO_DIR)/lib*/libginkgo*d.dylib $(GINKGO_DIR)/lib*/libginkgo*d.dll)))
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
ifeq ($(GINKGO_BUILD_TYPE),Debug)
@@ -382,13 +345,12 @@ ifeq ($(GINKGO_BUILD_TYPE),Debug)
endif
else
endif
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
$(GINKGO_LINK)
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LIB_DIR) -L$(GINKGO_LIB_DIR) $(GINKGO_LINK)
# AmgX library configuration
AMGX_DIR = @MFEM_DIR@/../amgx
AMGX_OPT = -I$(AMGX_DIR)/include
AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
AMGX_LIB = -lcusparse -lcusolver -lcublas -lnvToolsExt -L$(AMGX_DIR)/lib -lamgx
# GnuTLS library configuration
GNUTLS_OPT =
@@ -522,6 +484,7 @@ ifdef GOTCHA_DIR
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
endif
# BLITZ library configuration
BLITZ_DIR = @MFEM_DIR@/../blitz
BLITZ_OPT = -I$(BLITZ_DIR)/include
@@ -543,29 +506,20 @@ CEED_OPT = -I$(CEED_DIR)/include
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
# RAJA library configuration
ifeq ($(MFEM_USE_RAJA),YES)
BASE_FLAGS = -std=c++14
endif
RAJA_DIR = @MFEM_DIR@/../raja
RAJA_OPT = -I$(RAJA_DIR)/include
ifdef CUB_DIR
RAJA_OPT += -I$(CUB_DIR)
endif
CAMP_LIB = -lcamp
ifdef CAMP_DIR
RAJA_OPT += -I$(CAMP_DIR)/include
CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
endif
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
# UMPIRE library configuration
ifeq ($(MFEM_USE_UMPIRE),YES)
BASE_FLAGS = -std=c++14
endif
UMPIRE_DIR = @MFEM_DIR@/../umpire
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
# MKL CPardiso library configuration
MKL_CPARDISO_DIR ?=
@@ -576,29 +530,11 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# MKL Pardiso library configuration
MKL_PARDISO_DIR ?=
MKL_LIBRARY_SUBDIR ?= lib
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
# PARELAG library configuration
PARELAG_DIR = @MFEM_DIR@/../parelag
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
# Tribol library configuration
ifeq ($(MFEM_USE_TRIBOL),YES)
BASE_FLAGS = -std=c++14
endif
AXOM_DIR = @MFEM_DIR@/../axom
TRIBOL_DIR = @MFEM_DIR@/../tribol
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
-laxom_slam -laxom_slic -laxom_core
# Enzyme configuration
# If you want to enable automatic differentiation at compile time, use the
+2
View File
@@ -19,7 +19,9 @@ RUN apt-get update && \
apt-get install -y libcurl4-openssl-dev libssl-dev
ENV PATH=$PATH:/opt/mfem-view/bin
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
ENV DEBIAN_FRONTEND=noninteractive
# The user will see the view on shell into the container
WORKDIR /opt/mfem-view
ENTRYPOINT ["/bin/bash"]
+6 -6
View File
@@ -34,14 +34,14 @@ RUN cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack develop --path /code mfem@master+examples+miniapps && \
spack add mfem@master+examples+miniapps && \
spack install
spack add mfem@master+examples+miniapps # && \
# spack install
# ensure mfem always on various paths
RUN cd /opt/mfem-env && \
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
#RUN cd /opt/mfem-env && \
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Present the software install when we shell in
# The view is at /opt/mfem-env/.spack-env/view
WORKDIR /opt/software
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
#WORKDIR /opt/software
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
+46 -108
View File
@@ -7,31 +7,21 @@ You can use this image for a demo of using mfem! 🎉️
Updated containers are built and deployed on merges to the main branch and releases.
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
## Usage
### Usage
We provide two containers, which you can either build or use directly from
[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
- `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
- `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
In the above, "ghcr.io" means "GitHub Container Registry" and
Here is how to build the container. Note that we build so it belongs to the same
namespace as the repository here. "ghcr.io" means "GitHub Container Registry" and
is the [GitHub packages](https://github.com/features/packages) registry that supports
Docker images and other OCI artifacts.
### Ubuntu
> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
so you don't need to build it. However, if you want to, you can do the following:
Docker images and other OCI artifacts. From the root of the repository:
```bash
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
below. Once you have built (or prefer to pull) you can shell into the container as follows:
### Shell Ubuntu
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu
@@ -47,13 +37,39 @@ bin etc include lib libexec sbin share var
- Examples are in share/mfem/examples
- Examples are in share/mfem/miniapps
Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
You can read more about interaction with these examples and miniapps below.
### Shell Ubuntu Base
To shell into the container:
```bash
$ ls include/ | grep mfem
mfem
mfem-performance.hpp
mfem.hpp
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Off the bat, you can see mfem libraries are in your path so you can jump into development:
```bash
env | grep mfem
```
```bash
PKG_CONFIG_PATH=/opt/mfem-env/.spack-env/view/lib/pkgconfig:/opt/mfem-env/.spack-env/view/share/pkgconfig:/opt/mfem-env/.spack-env/view/lib64/pkgconfig
PWD=/opt/mfem-env
MANPATH=/opt/mfem-env/.spack-env/view/share/man:/opt/mfem-env/.spack-env/view/man:
CMAKE_PREFIX_PATH=/opt/mfem-env/.spack-env/view
SPACK_ENV=/opt/mfem-env
ACLOCAL_PATH=/opt/mfem-env/.spack-env/view/share/aclocal
LD_LIBRARY_PATH=/opt/mfem-env/.spack-env/view/lib:/opt/mfem-env/.spack-env/view/lib64
PATH=/opt/mfem-env/.spack-env/view/bin:/opt/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
```
#### Examples and MiniApps
If you want to develop a tool that _uses_ mfem, you can find the built libraries in:
```
$ ls /opt/mfem-env/.spack-env/view/
bin etc include lib libexec sbin share var
```
And yes, this is the working directory when you shell into the container!
@@ -63,16 +79,6 @@ You can find the examples here:
```bash
cd share/mfem/examples
```
Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
we need:
```bash
export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
```
And then run:
```bash
$ ./ex0
Options used:
@@ -91,6 +97,7 @@ Number of unknowns: 101
Average reduction factor = 0.140201
```
Try running a few, and look at the associated .cpp file for the source code!
You can also explore the "mini apps," also in share/mfem, but under miniapps.
```bash
@@ -123,87 +130,18 @@ Rule:
Applying rule...done.
```
Have fun! As a reminder, this container is ideal for developing your own
applications that might use mfem, or having a nice environment to test out
examples.
Have fun!
### Ubuntu Base
> Use this build for a development environment with spack and mfem
This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
however you can build it locally too:
#### Your own App
If you want to develop with your own code base
(and mfem as is in the container) you can bind to somewhere else in the container (e.g., src)
```bash
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Change directory to the mfem environment, setup spack, and activate the environment:
```bash
source /opt/spack/share/spack/setup-env.sh
cd /opt/mfem-env/
spack env activate .
```
Note that this environment is installing to the view at `/opt/view`. Since the environment
knows to install mfem from `/code` this means that you could make changes in the container (or bind
`/code` to your container) and then update spack:
```bash
# Note that concretization takes a hot minute!
$ spack install
```
And if you want to load mfem:
```bash
$ spack load mfem
$ env | grep mfem
```
In this development container, you can find the examples and miniapps alongside
mfem under `/code`:
```bash
cd /code/examples
```
```bash
$ ./ex0
```
```console
Options used:
--mesh ../data/star.mesh
--order 1
Number of unknowns: 101
Iteration : 0 (B r, r) = 0.184259
Iteration : 1 (B r, r) = 0.102754
Iteration : 2 (B r, r) = 0.00558141
Iteration : 3 (B r, r) = 1.5247e-05
Iteration : 4 (B r, r) = 1.13807e-07
Iteration : 5 (B r, r) = 6.27231e-09
Iteration : 6 (B r, r) = 3.76268e-11
Iteration : 7 (B r, r) = 6.07423e-13
Iteration : 8 (B r, r) = 4.10615e-15
Average reduction factor = 0.140201
```
This container is likely ideal for someone that wants to develop mfem itself.
For other use cases, we recommend using the slimmer image. As an example,
if you want to develop with your own code base (and mfem as is in the container)
you can bind to somewhere else in the container (e.g., src)
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
```
In the above, we can pretend your project is in the present working directory (PWD) and we are
binding to source. You can then use the mfem in the container for development, and if you
want to distribute your library or app in a container, you can use the mfem container as the base.
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -5
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -9,11 +9,7 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifdef MFEM_USE_SINGLE
#include "smumps_c.h"
#else
#include "dmumps_c.h"
#endif
#include <string>
#include <iostream>
#include <algorithm>
+3 -20
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -21,7 +21,6 @@ if [[ "${option}" == "--help" ]]; then
echo " --copyright"
echo " --license"
echo " --release"
echo " --math"
echo " --style"
echo " --history"
echo ""
@@ -36,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
# copyright check
copyright=true
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^4]\|[^2].\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2024:"
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2022:"
cat matches.txt
copyright=false
fi
@@ -64,18 +63,6 @@ if [[ "${option}" == "--release" || "${option}" == "" ]]; then
fi
fi
# math in doxygen check
math=true
if [[ "${option}" == "--math" || "${option}" == "" ]]; then
if grep '\\f' -R doc/CodeDocumentation.dox mfem.hpp config general linalg mesh fem examples miniapps | grep -v '\\frac' | grep -v fem/picojson.h | grep -v config/githooks/pre-push > matches.txt
then
echo "Please use $..$ and \$\$..\$\$ for LaTeX formulas in the following"
echo "comments instead of the Doxygen style \f$..\f$, \f[..\f], etc."
cat matches.txt
math=false
fi
fi
# wrap-up
code=0
if ! $copyright ; then
@@ -90,10 +77,6 @@ if ! $release ; then
echo "release check failed, unroll log for details"
code=1
fi
if ! $math ; then
echo "math in doxygen check failed, unroll log for details"
code=1
fi
# `code-style` is not just a check, it will actually reformat the code if
# necessary. This means that if one pushes while the repo is in dirty state
+3 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -38,14 +38,14 @@ all: header config-mk
MPI = $(MFEM_USE_MPI:NO=)
GHV_CXX ?= $(MFEM_CXX)
GHV = get_hypre_version
GHV_FLAGS = $(MFEM_CXXFLAGS) $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
MUMPS = $(MFEM_USE_MUMPS:NO=)
GMV_CXX ?= $(MFEM_CXX)
GMV = get_mumps_version
GMV_FLAGS = $(MFEM_CXXFLAGS) $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
GMV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))
$(GHV): $(SRC)$(GHV).cpp
$(call mfem-info, Determining HYPRE version ...)
@@ -110,4 +110,3 @@ config-mk:
clean:
rm -f $(CONFIG_HPP) $(CONFIG_MK) sample-runs-build.log
rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out *.dSYM
+4 -4
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -138,7 +138,7 @@ groups_parallel=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
"pmesh-optimizer.cpp pminimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
@@ -227,7 +227,7 @@ groups_all=(
"Meshing miniapps:"
"miniapps/meshing"
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
@@ -315,7 +315,7 @@ function extract_sample_runs()
sruns=`grep -v "^//.* mpirun .* ${app}" "${src}" |
grep "^//.* ${app}" |
sed -e "s/.* ${app}/${vg_app}/g"`
runs="${sruns}"$'\n'"${pruns}"
runs="${sruns}${pruns}"
if [ "$skip_gen_meshes" == "yes" ]; then
runs=`printf "%s" "$runs" | grep -v ".* -m .*\.gen"`
fi
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
-95
View File
@@ -1,95 +0,0 @@
MFEM NURBS mesh v1.1
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
2
elements
2
1 3 0 1 4 5
2 3 1 2 3 4
boundary
6
3 1 0 1
3 1 4 5
3 1 1 2
3 1 3 4
1 1 5 0
2 1 2 3
edges
7
0 0 1
0 5 4
1 1 2
1 4 3
2 0 5
2 1 4
2 2 3
vertices
6
knotvectors
3
1 5 0 0 1 2 3 4 4
1 5 0 0 1 2 3 4 4
1 2 0 0 1 1
spacing
3
0 5 3 1 4 0 0 10.0
1 4 3 2 4 0 1 0.15 0.15
2 2 3 1 1 0 1 0.4
weights
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
FiniteElementSpace
FiniteElementCollection: NURBS1
VDim: 2
Ordering: 1
0 0
4 0
8 0
8 1
4 1
0 1
1 0
2 0
3 0
3 1
2 1
1 1
5 0
6 0
7 0
7 1
6 1
5 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
-118
View File
@@ -1,118 +0,0 @@
SetFactory("OpenCASCADE");
order = 1;
R = 1;
r = 0.2;
Point(1) = {0,0,0};
Point(2) = {r/Sqrt(2),r/Sqrt(2),0};
Point(3) = {-r/Sqrt(2),r/Sqrt(2),0};
Point(4) = {-r/Sqrt(2),-r/Sqrt(2),0};
Point(5) = {r/Sqrt(2),-r/Sqrt(2),0};
Point(6) = {R,0,0};
Point(7) = {R/Sqrt(2),R/Sqrt(2),0};
Point(8) = {0,R,0};
Point(9) = {-R/Sqrt(2),R/Sqrt(2),0};
Point(10) = {-R,0,0};
Point(11) = {-R/Sqrt(2),-R/Sqrt(2),0};
Point(12) = {0,-R,0};
Point(13) = {R/Sqrt(2),-R/Sqrt(2),0};
Line(1) = {1,2};
Line(2) = {1,3};
Line(3) = {1,4};
Line(4) = {1,5};
Line(5) = {1,6};
Line(6) = {1,8};
Line(7) = {1,10};
Line(8) = {1,12};
Line(9) = {2,6};
Line(10) = {2,8};
Line(11) = {3,8};
Line(12) = {3,10};
Line(13) = {4,10};
Line(14) = {4,12};
Line(15) = {5,12};
Line(16) = {5,6};
Line(17) = {6,7};
Line(18) = {7,8};
Line(19) = {8,9};
Line(20) = {9,10};
Line(21) = {10,11};
Line(22) = {11,12};
Line(23) = {12,13};
Line(24) = {13,6};
Transfinite Curve{1:24} = 2;
Physical Curve("ENE") = {17};
Physical Curve("NNE") = {18};
Physical Curve("NNW") = {19};
Physical Curve("WNW") = {20};
Physical Curve("WSW") = {21};
Physical Curve("SSW") = {22};
Physical Curve("SSE") = {23};
Physical Curve("ESE") = {24};
Curve Loop(1) = {9,17,18,-10};
Curve Loop(2) = {11,19,20,-12};
Curve Loop(3) = {13,21,22,-14};
Curve Loop(4) = {15,23,24,-16};
Plane Surface(1) = {1};
Plane Surface(2) = {2};
Plane Surface(3) = {3};
Plane Surface(4) = {4};
Transfinite Surface{1} = {2,6,7,8};
Transfinite Surface{2} = {3,8,9,10};
Transfinite Surface{3} = {4,10,11,12};
Transfinite Surface{4} = {5,12,13,6};
Recombine Surface{1:4};
Physical Surface("Base") = {1,2,3,4};
Curve Loop(5) = {1,10,-6};
Plane Surface(5) = {5};
Physical Surface("N Even") = {5};
Curve Loop(6) = {6,-11,-2};
Plane Surface(6) = {6};
Physical Surface("N Odd") = {6};
Curve Loop(7) = {2,12,-7};
Plane Surface(7) = {7};
Physical Surface("W Even") = {7};
Curve Loop(8) = {7,-13,-3};
Plane Surface(8) = {8};
Physical Surface("W Odd") = {8};
Curve Loop(9) = {3,14,-8};
Plane Surface(9) = {9};
Physical Surface("S Even") = {9};
Curve Loop(10) = {8,-15,-4};
Plane Surface(10) = {10};
Physical Surface("S Odd") = {10};
Curve Loop(11) = {4,16,-5};
Plane Surface(11) = {11};
Physical Surface("E Even") = {11};
Curve Loop(12) = {5,-9,-1};
Plane Surface(12) = {12};
Physical Surface("E Odd") = {12};
// Generate 2D mesh
Mesh 2;
SetOrder order;
Mesh.MshFileVersion = 2.2;
Save "compass.msh";

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